Running as unit: rb-build-i386_16-49570.service ==================================================================================== Mon Nov 25 17:08:29 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_16) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Mon Nov 25 17:08:29 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-T7nEnT0y" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:08:29 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 17:08:29 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-8kRgj9' Mon Nov 25 17:08:29 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 17:08:29 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-YIgKbS' ok, let's check if macromoleculebuilder is building anywhere yet… ok, macromoleculebuilder is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of macromoleculebuilder in bookworm on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Mon Nov 25 17:08:41 UTC 2024 I: starting to build macromoleculebuilder/bookworm/i386 on jenkins on '2024-11-25 17:08' Mon Nov 25 17:08:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/49570/console.log 1732554521 i386 bookworm macromoleculebuilder Mon Nov 25 17:08:41 UTC 2024 I: Downloading source for bookworm/macromoleculebuilder=4.0.0+dfsg-2 --2024-11-25 17:08:42-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macromoleculebuilder/macromoleculebuilder_4.0.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2434 (2.4K) [text/prs.lines.tag] Saving to: ‘macromoleculebuilder_4.0.0+dfsg-2.dsc’ 0K .. 100% 333M=0s 2024-11-25 17:08:42 (333 MB/s) - ‘macromoleculebuilder_4.0.0+dfsg-2.dsc’ saved [2434/2434] --2024-11-25 17:08:42-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macromoleculebuilder/macromoleculebuilder_4.0.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2434 (2.4K) [text/prs.lines.tag] Saving to: ‘macromoleculebuilder_4.0.0+dfsg-2.dsc’ 0K .. 100% 333M=0s 2024-11-25 17:08:42 (333 MB/s) - ‘macromoleculebuilder_4.0.0+dfsg-2.dsc’ saved [2434/2434] Mon Nov 25 17:08:42 UTC 2024 I: macromoleculebuilder_4.0.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macromoleculebuilder Binary: libmmb-dev, libmmb4.0, mmb, mmb-common Architecture: any all Version: 4.0.0+dfsg-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/rnatoolbox Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Build-Depends: asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, gemmi-dev (>= 0.5.3), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev Package-List: libmmb-dev deb libdevel optional arch=any libmmb4.0 deb libs optional arch=any mmb deb science optional arch=any mmb-common deb science optional arch=all Checksums-Sha1: c37eccceb961f3e78d5b7145faf79ce425cf104e 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz b50806d1a7f0dcf9c2987b1419b63757365a490d 4240 macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz Checksums-Sha256: 2f50d11c886c36fd18476f942d7521536ded599584e0d83462a63ba5f9ccc449 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz ba82afa6469b21a3668baab8b8fa19e7354fadddde38b601e8977aab43512430 4240 macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz Files: 951370d06adf03fb858edccdee43c075 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz 173b7de595d3165989f43175a22a73f5 4240 macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmOW7zISHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHfTwP/jJTXmAoUwIHrjUxPTfgMk8K/q8xIYtv quZPN/OmA/Hur/9Px4W/XBW5Ra8e5rfse7KT4nqHg4wT+d5oN0PZq/s+0xVhvGL0 2MwLay63LrwsZxXtpak8YNiczuewHt2CdJf9E4MhgKeIIVSRVr+euBxIj7YupxAb 1maEqm67DjcbhNJHmnxQgEi5GkTNb85OOJakQGPuX6zw6dJit1MLOZ+88wKnYZSz CyM7T5fELyk9FVXrV9NYaVfcWccx0l6uvSfABobPGQWq93G1md1G9yI+KEVrxnAR y4/XQ4zOiSC9wRiB85tVxR7WO7+5K0o8/YKUeBl7avcaB9rEKLU3s8vJHxsSc/Dd E/hbMlExycJNzNcJ6GGbTocsagp7TfQ8jdMoN/BKdfFHdivc9gXhVtGl1WKiGKyp ZqT73cfsEHYbo2C4tlYuOEwtgZSYsHwhmB7cOf03QTvIqr1a2OkUPlPywtsjNEAl gQBGjkjgDK46io9Ew2M3otAsKRstMgXSJX8ZPQtma82YUZB8D7ip+LTDDeaXwGMb uYdjLyxvRO4oqmLh2svNrGxbmiz7Jl4kqaNcggSJIjgsoDJorz/MypUiHyLEXjal 4/H4rOiYeixHlaeJk9a4x5YHn+qM+3zZV9lbBa7Q2VaOoHspU76JnPV6Q/hkH+q8 fhH2wJrD0rgL =0Rl3 -----END PGP SIGNATURE----- Mon Nov 25 17:08:42 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:08:42 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Nov 25 17:08:42 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Nov 25 17:08:42 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 17:08:42 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-5Um0F4' ==================================================================================== Sun Dec 28 23:31:43 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 macromoleculebuilder bookworm /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy 4.0.0+dfsg-2" as arguments. Sun Dec 28 23:31:43 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Xg3t0Ooc" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 23:31:43 UTC 2025 I: Downloading source for bookworm/macromoleculebuilder=4.0.0+dfsg-2 Reading package lists... NOTICE: 'macromoleculebuilder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Please use: git clone https://salsa.debian.org/debichem-team/macromoleculebuilder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2574 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (dsc) [2434 B] Get:2 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (tar) [2567 kB] Get:3 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (diff) [4240 B] Fetched 2574 kB in 0s (18.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'macromoleculebuilder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Please use: git clone https://salsa.debian.org/debichem-team/macromoleculebuilder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2574 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (dsc) [2434 B] Get:2 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (tar) [2567 kB] Get:3 http://deb.debian.org/debian bookworm/main macromoleculebuilder 4.0.0+dfsg-2 (diff) [4240 B] Fetched 2574 kB in 0s (18.5 MB/s) Download complete and in download only mode ============================================================================= Building macromoleculebuilder in bookworm on i386 on infom08-i386 now. Date: Sun Dec 28 23:31:43 UTC 2025 Date UTC: Sun Dec 28 23:31:43 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 11:31:43 -12 2025 I: pbuilder-time-stamp: 1766964703 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [macromoleculebuilder_4.0.0+dfsg-2.dsc] I: copying [./macromoleculebuilder_4.0.0+dfsg.orig.tar.xz] I: copying [./macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 11 21:06:58 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.0.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting macromoleculebuilder in macromoleculebuilder-4.0.0+dfsg dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24175/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5a156131a9d442ee9417be8350266f13' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24175' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/pbuilderrc_bOC0 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/b1 --logfile b1/build.log macromoleculebuilder_4.0.0+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 2024 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 2024 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 2024 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 2024 more -rwsr-xr-x 1 root root 58912 Oct 18 2024 mount -rwxr-xr-x 1 root root 13856 Oct 18 2024 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 2024 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 2024 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 2024 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/24175/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, gemmi-dev (>= 0.5.3), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on asciidoc-base; however: Package asciidoc-base is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on docbook-xml; however: Package docbook-xml is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev (>= 0.5.3); however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-dev (>= 3.1.0); however: Package libsimtkmolmodel-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-plugins; however: Package libsimtkmolmodel-plugins is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xmlto 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 451 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libopenmm-dev which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-dev (>= 3.1.0) which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-plugins which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xmlto 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 451 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24175 and its subdirectories Starting cleanup. All cleanup done. Sun Dec 28 23:31:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Xg3t0Ooc, removing. /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:08 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:08 b2 -rw-r--r-- 1 jenkins jenkins 2434 Dec 12 2022 macromoleculebuilder_4.0.0+dfsg-2.dsc -rw------- 1 jenkins jenkins 3661 Nov 25 17:08 rbuildlog.VT2acA5 /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/b1: total 20 -rw-r--r-- 1 jenkins jenkins 17439 Nov 25 17:08 build.log /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/b2: total 0 Mon Nov 25 17:08:56 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 11:31:43 -12 2025 I: pbuilder-time-stamp: 1766964703 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [macromoleculebuilder_4.0.0+dfsg-2.dsc] I: copying [./macromoleculebuilder_4.0.0+dfsg.orig.tar.xz] I: copying [./macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 11 21:06:58 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.0.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting macromoleculebuilder in macromoleculebuilder-4.0.0+dfsg dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24175/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5a156131a9d442ee9417be8350266f13' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24175' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/pbuilderrc_bOC0 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bpZWvyFy/b1 --logfile b1/build.log macromoleculebuilder_4.0.0+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 2024 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 2024 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 2024 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 2024 more -rwsr-xr-x 1 root root 58912 Oct 18 2024 mount -rwxr-xr-x 1 root root 13856 Oct 18 2024 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 2024 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 2024 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 2024 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/24175/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, gemmi-dev (>= 0.5.3), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on asciidoc-base; however: Package asciidoc-base is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on docbook-xml; however: Package docbook-xml is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev (>= 0.5.3); however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-dev (>= 3.1.0); however: Package libsimtkmolmodel-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-plugins; however: Package libsimtkmolmodel-plugins is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xmlto 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 451 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libopenmm-dev which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-dev (>= 3.1.0) which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-plugins which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xmlto 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 451 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24175 and its subdirectories macromoleculebuilder failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.build1.log.gz' Mon Nov 25 17:08:57 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 74.7% -- replaced with stdout Mon Nov 25 17:08:57 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 17:08:57 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 17:08:57 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:08:58] INFO: Starting at 2024-11-25 17:08:58.285799 [2024-11-25 17:08:58] INFO: Generating the pages of 1 package(s) [2024-11-25 17:08:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/macromoleculebuilder_4.0.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/macromoleculebuilder_4.0.0+dfsg-2.diff.gz is missing [2024-11-25 17:08:59] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/i386/macromoleculebuilder didn't produce a buildlog, even though it has been built. [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/macromoleculebuilder_3.2+dfsg-2+deb11u1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/macromoleculebuilder_3.2+dfsg-2+deb11u1.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/macromoleculebuilder_3.2+dfsg-2+deb11u1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/macromoleculebuilder_3.2+dfsg-2+deb11u1.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/armhf/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/armhf/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:08:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:08:59] INFO: Finished at 2024-11-25 17:08:59.407319, took: 0:00:01.121528 Mon Nov 25 17:08:59 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/i386/macromoleculebuilder.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.rbuild.log: 71.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.rbuild.log.gz [2024-11-25 17:08:59] INFO: Starting at 2024-11-25 17:08:59.949159 [2024-11-25 17:09:00] INFO: Generating the pages of 1 package(s) [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/macromoleculebuilder_4.0.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/macromoleculebuilder_4.0.0+dfsg-4.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/macromoleculebuilder_4.0.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/macromoleculebuilder_4.0.0+dfsg-2.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/macromoleculebuilder_4.0.0+dfsg-2.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/macromoleculebuilder_3.2+dfsg-2+deb11u1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/macromoleculebuilder_3.2+dfsg-2+deb11u1.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/macromoleculebuilder_3.2+dfsg-2+deb11u1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/macromoleculebuilder_3.2+dfsg-2+deb11u1.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/armhf/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/armhf/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:09:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/macromoleculebuilder_4.0.0+dfsg-3.1~exp1.diff.gz is missing [2024-11-25 17:09:01] INFO: Finished at 2024-11-25 17:09:01.337868, took: 0:00:01.388720 All cleanup done. Mon Nov 25 17:09:01 UTC 2024 - total duration: 0h 0m 28s. Mon Nov 25 17:09:01 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-T7nEnT0y, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 32.473s CPU time consumed: 6.791s