Running as unit: rb-build-i386_16-49636.service ==================================================================================== Mon Nov 25 18:53:33 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_16) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Mon Nov 25 18:53:33 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-K4CAyCsc" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 18:53:34 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 18:53:34 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-YvQw2c' Mon Nov 25 18:53:34 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 18:53:34 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-lhpib6' ok, let's check if r-cran-multidimbio is building anywhere yet… ok, r-cran-multidimbio is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-cran-multidimbio in unstable on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Mon Nov 25 18:53:56 UTC 2024 I: starting to build r-cran-multidimbio/unstable/i386 on jenkins on '2024-11-25 18:53' Mon Nov 25 18:53:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/49636/console.log 1732560836 i386 unstable r-cran-multidimbio Mon Nov 25 18:53:56 UTC 2024 I: Downloading source for unstable/r-cran-multidimbio=1.2.2-2 --2024-11-25 18:53:57-- http://deb.debian.org/debian/pool/main/r/r-cran-multidimbio/r-cran-multidimbio_1.2.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘r-cran-multidimbio_1.2.2-2.dsc’ 0K .. 100% 224M=0s 2024-11-25 18:53:57 (224 MB/s) - ‘r-cran-multidimbio_1.2.2-2.dsc’ saved [2250/2250] --2024-11-25 18:53:57-- http://deb.debian.org/debian/pool/main/r/r-cran-multidimbio/r-cran-multidimbio_1.2.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘r-cran-multidimbio_1.2.2-2.dsc’ 0K .. 100% 224M=0s 2024-11-25 18:53:57 (224 MB/s) - ‘r-cran-multidimbio_1.2.2-2.dsc’ saved [2250/2250] Mon Nov 25 18:53:57 UTC 2024 I: r-cran-multidimbio_1.2.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-cran-multidimbio Binary: r-cran-multidimbio Architecture: all Version: 1.2.2-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://cran.r-project.org/package=multiDimBio Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-multidimbio Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-multidimbio.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-ggplot2 (>= 3.2.0), r-cran-lme4, r-bioc-pcamethods (>= 1.76.0), r-cran-misc3d, r-cran-mass, r-cran-rcolorbrewer (>= 1.1-2), r-cran-gridgraphics Package-List: r-cran-multidimbio deb gnu-r optional arch=all Checksums-Sha1: 12b185fa20d064b5763550e223fddc056c6ec778 46932 r-cran-multidimbio_1.2.2.orig.tar.gz afa0d5ad3ba80f7b10fa3a562a245c6d69afcac0 2360 r-cran-multidimbio_1.2.2-2.debian.tar.xz Checksums-Sha256: 3d97194a5c7e07fbd0231d985e591c55875436c72edc17b080f8c2e7edbe4d75 46932 r-cran-multidimbio_1.2.2.orig.tar.gz 3480301c3cc9f4eeb25380e90972ee88a52e89918ff7a4e38ee54dbb0d59bf2e 2360 r-cran-multidimbio_1.2.2-2.debian.tar.xz Files: 98d45f2375ddc2acde6dc905e5a8ce9f 46932 r-cran-multidimbio_1.2.2.orig.tar.gz 583f9094f94696f3963dd078a42a6837 2360 r-cran-multidimbio_1.2.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7FDxwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGKng//RsvkhIIVOSM6qsRc46qOmNZhKY6OAYYX KAdg4mvqp+9E2gz8TtGcPpclPaIwveutuoN509T7mfh3e/RsHXTxlIWx0l+X8aox sz0ey6QAcC7IoXDFkkkNsvWxPqzHj9XYTDeGAA2w9DNIR/g6dArxCbmtuW6n5Nha XdbdZUsdAsvjJBtOkRk9vUarD15ws0oF2R2AtSQ1DRjadphsvmrph+TD3u+KHdiP xYiWmTDTcgoUzlAp6gVWGEmWTV+rnd33be0BwAJ1yY/Mkfyq6hlFnxAg+3qYzfGC OK21yW+Bd+1/rHzbkFvo642ZOSY4czyaIhAqejuife833Gd9fQtrXFLXT+QqfDOh 1ojIfp1gObjoshM3nGvDKtdxMBuv3Zl4fQ0XOL0EZ4F/+OUFjNYnU3myS62WRifh TGTyhl5VQ8FOy2NdJt+eIBMO8r75Udci6SG8zEKeyQMMyD8QgWScUAeVjrcWxbUG Rf37eVBkUCM1aNDU+c3vcmynXve+nCDNR5qHgvbS//imlN5SP+RikcJBkuY9Iyqp B1Mv+AH9Qmn00YNKg/xJAnIDtzXemEyVH0yrfE1kR0fOM96LJ1+FsVr4Cn1Zouoj fvstFWm97HGPj/yTViy9EpJeooWrHVzFbBilXFpAgEwMzb2NTCl+AS11i6RiVn5n ZP0ZZdbCaxo= =Hbke -----END PGP SIGNATURE----- Mon Nov 25 18:53:57 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 18:53:57 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Nov 25 18:53:57 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Nov 25 18:53:57 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 18:53:57 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-IO0D7q' ==================================================================================== Mon Dec 29 01:16:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-cran-multidimbio unstable /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9 1.2.2-2" as arguments. Mon Dec 29 01:16:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-SZbeDzCO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Dec 29 01:16:58 UTC 2025 I: Downloading source for unstable/r-cran-multidimbio=1.2.2-2 Reading package lists... NOTICE: 'r-cran-multidimbio' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-multidimbio.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-multidimbio.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 51.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (tar) [46.9 kB] Get:3 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (diff) [2360 B] Fetched 51.5 kB in 0s (782 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-cran-multidimbio' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-multidimbio.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-multidimbio.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 51.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (tar) [46.9 kB] Get:3 http://deb.debian.org/debian unstable/main r-cran-multidimbio 1.2.2-2 (diff) [2360 B] Fetched 51.5 kB in 0s (782 kB/s) Download complete and in download only mode ============================================================================= Building r-cran-multidimbio in unstable on i386 on infom08-i386 now. Date: Mon Dec 29 01:16:58 UTC 2025 Date UTC: Mon Dec 29 01:16:58 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 13:16:59 -12 2025 I: pbuilder-time-stamp: 1766971019 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-cran-multidimbio_1.2.2-2.dsc] I: copying [./r-cran-multidimbio_1.2.2.orig.tar.gz] I: copying [./r-cran-multidimbio_1.2.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 20 11:06:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-multidimbio_1.2.2-2.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-multidimbio in r-cran-multidimbio-1.2.2 dpkg-source: info: unpacking r-cran-multidimbio_1.2.2.orig.tar.gz dpkg-source: info: unpacking r-cran-multidimbio_1.2.2-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9779/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bc91ed2b8cb74c409f7b202b774abe8a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9779' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/pbuilderrc_hLM6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/b1 --logfile b1/build.log r-cran-multidimbio_1.2.2-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9779/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-ggplot2 (>= 3.2.0), r-cran-lme4, r-bioc-pcamethods (>= 1.76.0), r-cran-misc3d, r-cran-mass, r-cran-rcolorbrewer (>= 1.1-2), r-cran-gridgraphics dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2 (>= 3.2.0); however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lme4; however: Package r-cran-lme4 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pcamethods (>= 1.76.0); however: Package r-bioc-pcamethods is not installed. pbuilder-satisfydepends-dummy depends on r-cran-misc3d; however: Package r-cran-misc3d is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer (>= 1.1-2); however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridgraphics; however: Package r-cran-gridgraphics is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnuma1{a} libopengl0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} littler{a} m4{a} man-db{a} mesa-libgallium{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-base64enc{a} r-cran-boot{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridgraphics{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-lme4{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-minqa{a} r-cran-misc3d{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rgl{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx mesa-vulkan-drivers node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-formattable r-cran-future r-cran-generics r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pdftools r-cran-pkgdown r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 323 newly installed, 0 to remove and 0 not upgraded. Need to get 266 MB of archives. After unpacking 1021 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-pcamethods (>= 1.76.0) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnuma1{a} libopengl0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} littler{a} m4{a} man-db{a} mesa-libgallium{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-base64enc{a} r-cran-boot{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridgraphics{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-lme4{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-minqa{a} r-cran-misc3d{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rgl{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx mesa-vulkan-drivers node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-formattable r-cran-future r-cran-generics r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pdftools r-cran-pkgdown r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 323 newly installed, 0 to remove and 0 not upgraded. Need to get 266 MB of archives. After unpacking 1021 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9779 and its subdirectories Starting cleanup. All cleanup done. Mon Dec 29 01:17:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-SZbeDzCO, removing. /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 18:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 18:53 b2 -rw-r--r-- 1 jenkins jenkins 2250 May 20 2020 r-cran-multidimbio_1.2.2-2.dsc -rw------- 1 jenkins jenkins 3425 Nov 25 18:53 rbuildlog.rF7d9vb /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/b1: total 24 -rw-r--r-- 1 jenkins jenkins 21579 Nov 25 18:54 build.log /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/b2: total 0 Mon Nov 25 18:54:13 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 13:16:59 -12 2025 I: pbuilder-time-stamp: 1766971019 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-cran-multidimbio_1.2.2-2.dsc] I: copying [./r-cran-multidimbio_1.2.2.orig.tar.gz] I: copying [./r-cran-multidimbio_1.2.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 20 11:06:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-multidimbio_1.2.2-2.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-multidimbio in r-cran-multidimbio-1.2.2 dpkg-source: info: unpacking r-cran-multidimbio_1.2.2.orig.tar.gz dpkg-source: info: unpacking r-cran-multidimbio_1.2.2-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9779/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bc91ed2b8cb74c409f7b202b774abe8a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9779' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/pbuilderrc_hLM6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JfEoeIG9/b1 --logfile b1/build.log r-cran-multidimbio_1.2.2-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9779/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-ggplot2 (>= 3.2.0), r-cran-lme4, r-bioc-pcamethods (>= 1.76.0), r-cran-misc3d, r-cran-mass, r-cran-rcolorbrewer (>= 1.1-2), r-cran-gridgraphics dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2 (>= 3.2.0); however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lme4; however: Package r-cran-lme4 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pcamethods (>= 1.76.0); however: Package r-bioc-pcamethods is not installed. pbuilder-satisfydepends-dummy depends on r-cran-misc3d; however: Package r-cran-misc3d is not installed. pbuilder-satisfydepends-dummy depends on r-cran-mass; however: Package r-cran-mass is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer (>= 1.1-2); however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridgraphics; however: Package r-cran-gridgraphics is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnuma1{a} libopengl0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} littler{a} m4{a} man-db{a} mesa-libgallium{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-base64enc{a} r-cran-boot{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridgraphics{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-lme4{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-minqa{a} r-cran-misc3d{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rgl{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx mesa-vulkan-drivers node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-formattable r-cran-future r-cran-generics r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pdftools r-cran-pkgdown r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 323 newly installed, 0 to remove and 0 not upgraded. Need to get 266 MB of archives. After unpacking 1021 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-pcamethods (>= 1.76.0) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnuma1{a} libopengl0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} littler{a} m4{a} man-db{a} mesa-libgallium{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-base64enc{a} r-cran-boot{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridgraphics{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-lme4{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-minqa{a} r-cran-misc3d{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rgl{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx mesa-vulkan-drivers node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-formattable r-cran-future r-cran-generics r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pdftools r-cran-pkgdown r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 323 newly installed, 0 to remove and 0 not upgraded. Need to get 266 MB of archives. After unpacking 1021 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9779 and its subdirectories r-cran-multidimbio failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-multidimbio_1.2.2-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-multidimbio_1.2.2-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-cran-multidimbio_1.2.2-2.build1.log.gz' Mon Nov 25 18:54:14 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 76.4% -- replaced with stdout Mon Nov 25 18:54:14 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 18:54:14 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 18:54:14 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 18:54:15] INFO: Starting at 2024-11-25 18:54:15.216647 [2024-11-25 18:54:15] INFO: Generating the pages of 1 package(s) [2024-11-25 18:54:15] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/r-cran-multidimbio didn't produce a buildlog, even though it has been built. [2024-11-25 18:54:15] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-cran-multidimbio_1.2.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-cran-multidimbio_1.2.2-2.diff.gz is missing [2024-11-25 18:54:15] INFO: Finished at 2024-11-25 18:54:15.576948, took: 0:00:00.360309 Mon Nov 25 18:54:15 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/r-cran-multidimbio.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-multidimbio_1.2.2-2.rbuild.log: 73.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-multidimbio_1.2.2-2.rbuild.log.gz [2024-11-25 18:54:15] INFO: Starting at 2024-11-25 18:54:15.944414 [2024-11-25 18:54:16] INFO: Generating the pages of 1 package(s) [2024-11-25 18:54:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-cran-multidimbio_1.2.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-cran-multidimbio_1.2.2-2.diff.gz is missing [2024-11-25 18:54:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-cran-multidimbio_1.2.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-cran-multidimbio_1.2.2-2.diff.gz is missing [2024-11-25 18:54:16] INFO: Finished at 2024-11-25 18:54:16.345119, took: 0:00:00.400713 All cleanup done. Mon Nov 25 18:54:16 UTC 2024 - total duration: 0h 0m 40s. Mon Nov 25 18:54:16 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-K4CAyCsc, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 42.675s CPU time consumed: 5.004s