Running as unit: rb-build-i386_19-31267.service ==================================================================================== Fri Nov 22 17:57:01 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_19) on jenkins, called using "infom07-i386 infom08-i386" as arguments. Fri Nov 22 17:57:01 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Wrejm1dV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 17:57:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 17:57:01 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-C7LXaL' Fri Nov 22 17:57:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 17:57:02 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-aoRU3N' ok, let's check if libbio-db-seqfeature-perl is building anywhere yet… ok, libbio-db-seqfeature-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbio-db-seqfeature-perl in trixie on i386 on jenkins now. 1st build will be done on infom07-i386.debian.net. 2nd build will be done on infom08-i386.debian.net. ============================================================================= Fri Nov 22 17:57:11 UTC 2024 I: starting to build libbio-db-seqfeature-perl/trixie/i386 on jenkins on '2024-11-22 17:57' Fri Nov 22 17:57:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_19/31267/console.log 1732298231 i386 trixie libbio-db-seqfeature-perl Fri Nov 22 17:57:11 UTC 2024 I: Downloading source for trixie/libbio-db-seqfeature-perl=1.7.5-1 --2024-11-22 17:57:12-- http://deb.debian.org/debian/pool/main/libb/libbio-db-seqfeature-perl/libbio-db-seqfeature-perl_1.7.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2477 (2.4K) [text/prs.lines.tag] Saving to: ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’ 0K .. 100% 274M=0s 2024-11-22 17:57:12 (274 MB/s) - ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’ saved [2477/2477] --2024-11-22 17:57:12-- http://deb.debian.org/debian/pool/main/libb/libbio-db-seqfeature-perl/libbio-db-seqfeature-perl_1.7.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2477 (2.4K) [text/prs.lines.tag] Saving to: ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’ 0K .. 100% 274M=0s 2024-11-22 17:57:12 (274 MB/s) - ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’ saved [2477/2477] Fri Nov 22 17:57:12 UTC 2024 I: libbio-db-seqfeature-perl_1.7.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-db-seqfeature-perl Binary: libbio-db-seqfeature-perl Architecture: all Version: 1.7.5-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Étienne Mollier Homepage: https://metacpan.org/release/Bio-DB-SeqFeature Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl Package-List: libbio-db-seqfeature-perl deb perl optional arch=all Checksums-Sha1: fa9683859235e2e08868e5fd131cdb2f64138e33 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz 2703b137885dfc7da21eecef8cf416e2ee723b43 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz Checksums-Sha256: 384b3b416f43df2bf4272abeeac5671310b21e75951be1ddc52daa41794dd2d1 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz 1fcc1e0f369893bf4e21f11fd71a450d810c11a6fbd4c0a91285cd83d1241ab4 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz Files: 521c760af1b2e8f095c7a9c5ff0f8381 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz 0a08aeec7efdc74d4dafe427e30b2cd6 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz Dgit: 9b039b3477b2e15c05db508282f3604dbec7d9dc debian archive/debian/1.7.5-1 https://git.dgit.debian.org/libbio-db-seqfeature-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcJBGUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdod6w/+MU7UDT+cFeRzsf+4QDcI4BQWZgwN MDt46hKSU8fsrVE9SHz2s8DWQrzkg8thkpiGOP4tDnIo7nPvua1zfzG7EacjMcBn OGg3lzWcAY6y5YjTqOhTvh4nSqaOPxRLxEZ9BG+mEAaKAtE4JITSSjCRzWNbxhmq TSVWx605HtT1ndA6S9E7QnLbcuFgYQI4CQ2IB7fziUstarE1XK6lhHxhNdRERamp tR8TNZH2EF2ZvmZe9kVj7kX20jd4meRhK3aU2nkNL22JG+Qg8kAQc6aESRinuJ27 Hpn1yXqU7D6u9f1da8V1PRICQObCTfA/T4D+TQQa3sQyrxsVAikQqnZZNepDqKlY pZ25CDmQeBZS3P7m/KdlSTNL0bvVD8RxnR+LDuyUbwBL0371vk1pyC1T8rCdw7Xd k3OnnDguxi7n8SmZ8QnBP6AwjzxPH5bFNqBd7WIFeCkBY7YJC0UvDd777DPTrQoB 7HVVR+HsgFl+zapQ+0fui6jfcieDtiLMMxwJ/SnztfqNU7Dh1Fv1KCABfwP161j2 6U3WSFLJPr7BlblLmMapL0AmQtazqy2WBNzTS+yOUEMPFhC6eerB52/QJ4QxcVYy 0uFVzeFTZ5LwzNfqvfn66nIv2bEt1svU5gTZnyURRprxHZfdrgTIXzq5Khp5/frO nzmXOknHMnH/1ds= =DCKp -----END PGP SIGNATURE----- Fri Nov 22 17:57:12 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 17:57:12 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Fri Nov 22 17:57:12 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Fri Nov 22 17:57:12 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 17:57:12 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-wpQ8fq' ==================================================================================== Fri Nov 22 17:57:13 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom07-i386, called using "1 libbio-db-seqfeature-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H 1.7.5-1" as arguments. Fri Nov 22 17:57:13 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-8vOodGGV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 17:57:13 UTC 2024 I: Downloading source for trixie/libbio-db-seqfeature-perl=1.7.5-1 Reading package lists... NOTICE: 'libbio-db-seqfeature-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 279 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (tar) [274 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (diff) [2312 B] Fetched 279 kB in 0s (1077 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-db-seqfeature-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 279 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (tar) [274 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (diff) [2312 B] Fetched 279 kB in 0s (1077 kB/s) Download complete and in download only mode ============================================================================= Building libbio-db-seqfeature-perl in trixie on i386 on infom07-i386 now. Date: Fri Nov 22 17:57:13 UTC 2024 Date UTC: Fri Nov 22 17:57:13 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 05:57:14 -12 2024 I: pbuilder-time-stamp: 1732298234 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-db-seqfeature-perl_1.7.5-1.dsc] I: copying [./libbio-db-seqfeature-perl_1.7.5.orig.tar.gz] I: copying [./libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 11 10:56:37 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-seqfeature-perl_1.7.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-seqfeature-perl in libbio-db-seqfeature-perl-1.7.5 dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5.orig.tar.gz dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='cb16da670e5d4940be663e7abc143172' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3963' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_9b39 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1 --logfile b1/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-gff-perl; however: Package libbio-db-gff-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however: Package libdbd-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however: Package libdbd-sqlite3-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-db-gff-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpipeline1{a} libpq5{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libapr1t64 i386 1.7.5-1 [114 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libaprutil1t64 i386 1.6.3-3 [95.8 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libaprutil1-dbd-sqlite3 i386 1.6.3-3 [14.2 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libaprutil1-ldap i386 1.6.3-3 [12.2 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.0-1 [392 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 liblua5.4-0 i386 5.4.6-3+b2 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 apache2-bin i386 2.4.62-3 [1462 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.30-1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 72 http://deb.debian.org/debian trixie/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libwww-perl all 6.77-1 [183 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libapache2-mod-perl2 i386 2.0.13-2+b1 [823 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libdbi-perl i386 1.645-1+b1 [865 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libapache-dbi-perl all 1.12-3 [48.5 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libcgi-pm-perl all 4.66-1 [217 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 90 http://deb.debian.org/debian trixie/main i386 libpq5 i386 17.0-1+b2 [229 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libdbd-pg-perl i386 3.18.0-1+b3 [215 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libdbd-sqlite3-perl i386 1.76-1 [179 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libexception-class-perl all 1.45-1 [34.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libtest-most-perl all 0.38-1 [25.1 kB] Fetched 33.5 MB in 0s (83.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_i386.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libapr1t64:i386. Preparing to unpack .../013-libapr1t64_1.7.5-1_i386.deb ... Unpacking libapr1t64:i386 (1.7.5-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../014-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package libaprutil1t64:i386. Preparing to unpack .../015-libaprutil1t64_1.6.3-3_i386.deb ... Unpacking libaprutil1t64:i386 (1.6.3-3) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:i386. Preparing to unpack .../016-libaprutil1-dbd-sqlite3_1.6.3-3_i386.deb ... Unpacking libaprutil1-dbd-sqlite3:i386 (1.6.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../017-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../018-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../019-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libaprutil1-ldap:i386. Preparing to unpack .../020-libaprutil1-ldap_1.6.3-3_i386.deb ... Unpacking libaprutil1-ldap:i386 (1.6.3-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../021-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../022-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../023-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../024-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../025-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../026-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../027-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../028-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../029-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../030-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../031-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../032-libcurl4t64_8.11.0-1_i386.deb ... Unpacking libcurl4t64:i386 (8.11.0-1) ... Selecting previously unselected package liblua5.4-0:i386. Preparing to unpack .../033-liblua5.4-0_5.4.6-3+b2_i386.deb ... Unpacking liblua5.4-0:i386 (5.4.6-3+b2) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../034-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../035-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../036-apache2-bin_2.4.62-3_i386.deb ... Unpacking apache2-bin (2.4.62-3) ... Selecting previously unselected package m4. Preparing to unpack .../037-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../045-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../048-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../049-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../054-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../055-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../056-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes dpkg-buildpackage: info: source package libbio-db-seqfeature-perl dpkg-buildpackage: info: source version 1.7.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::SeqFeature Writing MYMETA.yml and MYMETA.json dh_auto_build make -j6 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3 cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_delete "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_gff3 "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_load Manifying 1 pod document Manifying 20 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_auto_test make -j6 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..21 ok 1 - Bio/DB/SeqFeature.pm loaded ok ok 2 - Bio/DB/SeqFeature/NormalizedFeature.pm loaded ok ok 3 - Bio/DB/SeqFeature/NormalizedFeatureI.pm loaded ok ok 4 - Bio/DB/SeqFeature/NormalizedTableFeatureI.pm loaded ok ok 5 - Bio/DB/SeqFeature/Segment.pm loaded ok ok 6 - Bio/DB/SeqFeature/Store.pm loaded ok ok 7 - Bio/DB/SeqFeature/Store/DBI/Iterator.pm loaded ok ok 8 - Bio/DB/SeqFeature/Store/DBI/MariaDB.pm loaded ok ok 9 - Bio/DB/SeqFeature/Store/DBI/mysql.pm loaded ok ok 10 - Bio/DB/SeqFeature/Store/FeatureFileLoader.pm loaded ok ok 11 - Bio/DB/SeqFeature/Store/GFF2Loader.pm loaded ok ok 12 - Bio/DB/SeqFeature/Store/GFF3Loader.pm loaded ok ok 13 - Bio/DB/SeqFeature/Store/LoadHelper.pm loaded ok ok 14 - Bio/DB/SeqFeature/Store/Loader.pm loaded ok ok 15 - Bio/DB/SeqFeature/Store/bdb.pm loaded ok ok 16 - Bio/DB/SeqFeature/Store/berkeleydb.pm loaded ok ok 17 - Bio/DB/SeqFeature/Store/berkeleydb3.pm loaded ok ok 18 - Bio/DB/SeqFeature/Store/memory.pm loaded ok ok 19 - bin/bp_seqfeature_delete compiled ok ok 20 - bin/bp_seqfeature_gff3 compiled ok ok 21 - bin/bp_seqfeature_load compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/SeqFeature.t ......... 1..116 ok 1 - use Bio::SeqFeature::Generic; ok 2 - use Bio::DB::SeqFeature::Store; ok 3 - use Bio::DB::SeqFeature::Store::GFF3Loader; ok 4 - use Bio::Root::IO; ok 5 - use Bio::DB::Fasta; ok 6 - use File::Copy; ok 7 ok 8 ok 9 ok 10 - adding a feature ok 11 ok 12 ok 13 ok 14 - adding a feature with no primary_id ok 15 ok 16 - searching for a feature that shouldnt exist ok 17 - simple type ok 18 - base type with colon ok 19 - base type alone ok 20 - queried types are not interpolated ok 21 ok 22 ok 23 - An object of class 'Bio::DB::GFF::Typename' isa 'Bio::DB::GFF::Typename' ok 24 - feature deletion ok 25 ok 26 ok 27 - adding subfeatures ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 - feature names should be case insensitive ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 - base type ok 65 - base:source type ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 - An object of class 'Bio::Location::Split' isa 'Bio::Location::Split' ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 - keyword search; 1 term ok 103 - keyword search; 2 terms ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 112 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 113 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 114 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 115 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok All tests successful. Files=4, Tests=137, 4 wallclock secs ( 0.02 usr 0.02 sys + 1.86 cusr 0.24 csys = 2.14 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/ make -j6 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' Manifying 1 pod document Manifying 20 pod documents Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3 make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-seqfeature-perl' in '../libbio-db-seqfeature-perl_1.7.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3963 and its subdirectories I: Current time: Fri Nov 22 05:57:43 -12 2024 I: pbuilder-time-stamp: 1732298263 Fri Nov 22 17:57:43 UTC 2024 I: Signing ./b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo as libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc Fri Nov 22 17:57:43 UTC 2024 I: Signed ./b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo as ./b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc Fri Nov 22 17:57:43 UTC 2024 - build #1 for libbio-db-seqfeature-perl/trixie/i386 on infom07-i386 done. Starting cleanup. All cleanup done. Fri Nov 22 17:57:43 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-8vOodGGV, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 17:57 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 17:57 b2 -rw-r--r-- 1 jenkins jenkins 2477 Oct 11 11:06 libbio-db-seqfeature-perl_1.7.5-1.dsc -rw------- 1 jenkins jenkins 3700 Nov 22 17:57 rbuildlog.3rrKz1I /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1: total 524 -rw-r--r-- 1 jenkins jenkins 57240 Nov 22 17:57 build.log -rw-r--r-- 1 jenkins jenkins 2312 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1.dsc -rw-r--r-- 1 jenkins jenkins 166068 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_all.deb -rw-r--r-- 1 jenkins jenkins 7249 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8131 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1351 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1825 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 274481 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2: total 0 Fri Nov 22 17:57:44 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 05:57:14 -12 2024 I: pbuilder-time-stamp: 1732298234 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-db-seqfeature-perl_1.7.5-1.dsc] I: copying [./libbio-db-seqfeature-perl_1.7.5.orig.tar.gz] I: copying [./libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 11 10:56:37 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-seqfeature-perl_1.7.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-seqfeature-perl in libbio-db-seqfeature-perl-1.7.5 dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5.orig.tar.gz dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='cb16da670e5d4940be663e7abc143172' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3963' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_9b39 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1 --logfile b1/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-gff-perl; however: Package libbio-db-gff-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however: Package libdbd-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however: Package libdbd-sqlite3-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-db-gff-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpipeline1{a} libpq5{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libapr1t64 i386 1.7.5-1 [114 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libaprutil1t64 i386 1.6.3-3 [95.8 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libaprutil1-dbd-sqlite3 i386 1.6.3-3 [14.2 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libaprutil1-ldap i386 1.6.3-3 [12.2 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.0-1 [392 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 liblua5.4-0 i386 5.4.6-3+b2 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 apache2-bin i386 2.4.62-3 [1462 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.30-1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 72 http://deb.debian.org/debian trixie/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libwww-perl all 6.77-1 [183 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libapache2-mod-perl2 i386 2.0.13-2+b1 [823 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libdbi-perl i386 1.645-1+b1 [865 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libapache-dbi-perl all 1.12-3 [48.5 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libcgi-pm-perl all 4.66-1 [217 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 90 http://deb.debian.org/debian trixie/main i386 libpq5 i386 17.0-1+b2 [229 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libdbd-pg-perl i386 3.18.0-1+b3 [215 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libdbd-sqlite3-perl i386 1.76-1 [179 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libexception-class-perl all 1.45-1 [34.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libtest-most-perl all 0.38-1 [25.1 kB] Fetched 33.5 MB in 0s (83.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_i386.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libapr1t64:i386. Preparing to unpack .../013-libapr1t64_1.7.5-1_i386.deb ... Unpacking libapr1t64:i386 (1.7.5-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../014-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package libaprutil1t64:i386. Preparing to unpack .../015-libaprutil1t64_1.6.3-3_i386.deb ... Unpacking libaprutil1t64:i386 (1.6.3-3) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:i386. Preparing to unpack .../016-libaprutil1-dbd-sqlite3_1.6.3-3_i386.deb ... Unpacking libaprutil1-dbd-sqlite3:i386 (1.6.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../017-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../018-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../019-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libaprutil1-ldap:i386. Preparing to unpack .../020-libaprutil1-ldap_1.6.3-3_i386.deb ... Unpacking libaprutil1-ldap:i386 (1.6.3-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../021-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../022-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../023-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../024-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../025-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../026-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../027-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../028-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../029-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../030-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../031-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../032-libcurl4t64_8.11.0-1_i386.deb ... Unpacking libcurl4t64:i386 (8.11.0-1) ... Selecting previously unselected package liblua5.4-0:i386. Preparing to unpack .../033-liblua5.4-0_5.4.6-3+b2_i386.deb ... Unpacking liblua5.4-0:i386 (5.4.6-3+b2) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../034-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../035-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../036-apache2-bin_2.4.62-3_i386.deb ... Unpacking apache2-bin (2.4.62-3) ... Selecting previously unselected package m4. Preparing to unpack .../037-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../038-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../039-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../040-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../041-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../042-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../043-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../044-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../045-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../048-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../049-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes dpkg-buildpackage: info: source package libbio-db-seqfeature-perl dpkg-buildpackage: info: source version 1.7.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::SeqFeature Writing MYMETA.yml and MYMETA.json dh_auto_build make -j6 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3 cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_delete "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_gff3 "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_load Manifying 1 pod document Manifying 20 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_auto_test make -j6 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..21 ok 1 - Bio/DB/SeqFeature.pm loaded ok ok 2 - Bio/DB/SeqFeature/NormalizedFeature.pm loaded ok ok 3 - Bio/DB/SeqFeature/NormalizedFeatureI.pm loaded ok ok 4 - Bio/DB/SeqFeature/NormalizedTableFeatureI.pm loaded ok ok 5 - Bio/DB/SeqFeature/Segment.pm loaded ok ok 6 - Bio/DB/SeqFeature/Store.pm loaded ok ok 7 - Bio/DB/SeqFeature/Store/DBI/Iterator.pm loaded ok ok 8 - Bio/DB/SeqFeature/Store/DBI/MariaDB.pm loaded ok ok 9 - Bio/DB/SeqFeature/Store/DBI/mysql.pm loaded ok ok 10 - Bio/DB/SeqFeature/Store/FeatureFileLoader.pm loaded ok ok 11 - Bio/DB/SeqFeature/Store/GFF2Loader.pm loaded ok ok 12 - Bio/DB/SeqFeature/Store/GFF3Loader.pm loaded ok ok 13 - Bio/DB/SeqFeature/Store/LoadHelper.pm loaded ok ok 14 - Bio/DB/SeqFeature/Store/Loader.pm loaded ok ok 15 - Bio/DB/SeqFeature/Store/bdb.pm loaded ok ok 16 - Bio/DB/SeqFeature/Store/berkeleydb.pm loaded ok ok 17 - Bio/DB/SeqFeature/Store/berkeleydb3.pm loaded ok ok 18 - Bio/DB/SeqFeature/Store/memory.pm loaded ok ok 19 - bin/bp_seqfeature_delete compiled ok ok 20 - bin/bp_seqfeature_gff3 compiled ok ok 21 - bin/bp_seqfeature_load compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/SeqFeature.t ......... 1..116 ok 1 - use Bio::SeqFeature::Generic; ok 2 - use Bio::DB::SeqFeature::Store; ok 3 - use Bio::DB::SeqFeature::Store::GFF3Loader; ok 4 - use Bio::Root::IO; ok 5 - use Bio::DB::Fasta; ok 6 - use File::Copy; ok 7 ok 8 ok 9 ok 10 - adding a feature ok 11 ok 12 ok 13 ok 14 - adding a feature with no primary_id ok 15 ok 16 - searching for a feature that shouldnt exist ok 17 - simple type ok 18 - base type with colon ok 19 - base type alone ok 20 - queried types are not interpolated ok 21 ok 22 ok 23 - An object of class 'Bio::DB::GFF::Typename' isa 'Bio::DB::GFF::Typename' ok 24 - feature deletion ok 25 ok 26 ok 27 - adding subfeatures ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 - feature names should be case insensitive ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 - base type ok 65 - base:source type ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 - An object of class 'Bio::Location::Split' isa 'Bio::Location::Split' ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 - keyword search; 1 term ok 103 - keyword search; 2 terms ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 112 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 113 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 114 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 115 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok All tests successful. Files=4, Tests=137, 4 wallclock secs ( 0.02 usr 0.02 sys + 1.86 cusr 0.24 csys = 2.14 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/ make -j6 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' Manifying 1 pod document Manifying 20 pod documents Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3 make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-seqfeature-perl' in '../libbio-db-seqfeature-perl_1.7.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3963 and its subdirectories I: Current time: Fri Nov 22 05:57:43 -12 2024 I: pbuilder-time-stamp: 1732298263 Fri Nov 22 17:57:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom08-i386.debian.net. Fri Nov 22 17:57:45 UTC 2024 I: Preparing to do remote build '2' on infom08-i386.debian.net. Fri Nov 22 17:57:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 17:57:45 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-KZyBi9' ==================================================================================== Fri Dec 26 00:20:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "2 libbio-db-seqfeature-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H 1.7.5-1" as arguments. Fri Dec 26 00:20:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-57ec21HK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 26 00:20:46 UTC 2025 I: Downloading source for trixie/libbio-db-seqfeature-perl=1.7.5-1 Reading package lists... NOTICE: 'libbio-db-seqfeature-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 279 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (tar) [274 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (diff) [2312 B] Fetched 279 kB in 0s (2616 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-db-seqfeature-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 279 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (tar) [274 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-db-seqfeature-perl 1.7.5-1 (diff) [2312 B] Fetched 279 kB in 0s (2616 kB/s) Download complete and in download only mode ============================================================================= Re-Building libbio-db-seqfeature-perl in trixie on i386 on infom08-i386 now. Date: Fri Dec 26 00:20:46 UTC 2025 Date UTC: Fri Dec 26 00:20:46 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_bftd + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbio-db-seqfeature-perl = debian-installer -o libbio-db-seqfeature-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbio-db-seqfeature-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_bftd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2 --logfile b2/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 26 14:20:46 +14 2025 I: pbuilder-time-stamp: 1766708446 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-db-seqfeature-perl_1.7.5-1.dsc] I: copying [./libbio-db-seqfeature-perl_1.7.5.orig.tar.gz] I: copying [./libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 11 10:56:37 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-seqfeature-perl_1.7.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-seqfeature-perl in libbio-db-seqfeature-perl-1.7.5 dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5.orig.tar.gz dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D01_modify_environment starting debug: Running on infom08-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 26 00:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=bca931f98a024f86b2596fc7d0b79800 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10757 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_bftd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2 --logfile b2/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc' SUDO_GID=111 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-gff-perl; however: Package libbio-db-gff-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however: Package libdbd-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however: Package libdbd-sqlite3-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-db-gff-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpipeline1{a} libpq5{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libapr1t64 i386 1.7.5-1 [114 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libaprutil1t64 i386 1.6.3-3 [95.8 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libaprutil1-dbd-sqlite3 i386 1.6.3-3 [14.2 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libaprutil1-ldap i386 1.6.3-3 [12.2 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.0-1 [392 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 liblua5.4-0 i386 5.4.6-3+b2 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 apache2-bin i386 2.4.62-3 [1462 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.30-1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 72 http://deb.debian.org/debian trixie/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libwww-perl all 6.77-1 [183 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libapache2-mod-perl2 i386 2.0.13-2+b1 [823 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libdbi-perl i386 1.645-1+b1 [865 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libapache-dbi-perl all 1.12-3 [48.5 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libcgi-pm-perl all 4.66-1 [217 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 90 http://deb.debian.org/debian trixie/main i386 libpq5 i386 17.0-1+b2 [229 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libdbd-pg-perl i386 3.18.0-1+b3 [215 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libdbd-sqlite3-perl i386 1.76-1 [179 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libexception-class-perl all 1.45-1 [34.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libtest-most-perl all 0.38-1 [25.1 kB] Fetched 33.5 MB in 2s (19.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_i386.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libapr1t64:i386. Preparing to unpack .../013-libapr1t64_1.7.5-1_i386.deb ... Unpacking libapr1t64:i386 (1.7.5-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../014-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package libaprutil1t64:i386. Preparing to unpack .../015-libaprutil1t64_1.6.3-3_i386.deb ... Unpacking libaprutil1t64:i386 (1.6.3-3) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:i386. Preparing to unpack .../016-libaprutil1-dbd-sqlite3_1.6.3-3_i386.deb ... Unpacking libaprutil1-dbd-sqlite3:i386 (1.6.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../017-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../018-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../019-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libaprutil1-ldap:i386. Preparing to unpack .../020-libaprutil1-ldap_1.6.3-3_i386.deb ... Unpacking libaprutil1-ldap:i386 (1.6.3-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../021-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../022-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../023-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../024-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../025-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../026-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../027-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../028-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../029-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../030-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../031-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:i386. 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Setting up bsdextrautils (2.40.2-11) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:i386 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up perl-openssl-defaults:i386 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libapr1t64:i386 (1.7.5-1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up liblua5.4-0:i386 (5.4.6-3+b2) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:i386 (1.645-1+b1) ... Setting up libnet-ssleay-perl:i386 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libaprutil1t64:i386 (1.6.3-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libaprutil1-dbd-sqlite3:i386 (1.6.3-3) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:i386 (3.83-1+b1) ... Setting up libdbd-sqlite3-perl:i386 (1.76-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libcurl4t64:i386 (8.11.0-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libpq5:i386 (17.0-1+b2) ... Setting up libdbd-pg-perl (3.18.0-1+b3) ... Setting up libaprutil1-ldap:i386 (1.6.3-3) ... Setting up apache2-bin (2.4.62-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libapache2-mod-perl2 (2.0.13-2+b1) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/10757/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/10757/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes dpkg-buildpackage: info: source package libbio-db-seqfeature-perl dpkg-buildpackage: info: source version 1.7.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::SeqFeature Writing MYMETA.yml and MYMETA.json dh_auto_build make -j5 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm cp lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3 cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_delete "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_gff3 "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_load Manifying 1 pod document Manifying 20 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_auto_test make -j5 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..21 ok 1 - Bio/DB/SeqFeature.pm loaded ok ok 2 - Bio/DB/SeqFeature/NormalizedFeature.pm loaded ok ok 3 - Bio/DB/SeqFeature/NormalizedFeatureI.pm loaded ok ok 4 - Bio/DB/SeqFeature/NormalizedTableFeatureI.pm loaded ok ok 5 - Bio/DB/SeqFeature/Segment.pm loaded ok ok 6 - Bio/DB/SeqFeature/Store.pm loaded ok ok 7 - Bio/DB/SeqFeature/Store/DBI/Iterator.pm loaded ok ok 8 - Bio/DB/SeqFeature/Store/DBI/MariaDB.pm loaded ok ok 9 - Bio/DB/SeqFeature/Store/DBI/mysql.pm loaded ok ok 10 - Bio/DB/SeqFeature/Store/FeatureFileLoader.pm loaded ok ok 11 - Bio/DB/SeqFeature/Store/GFF2Loader.pm loaded ok ok 12 - Bio/DB/SeqFeature/Store/GFF3Loader.pm loaded ok ok 13 - Bio/DB/SeqFeature/Store/LoadHelper.pm loaded ok ok 14 - Bio/DB/SeqFeature/Store/Loader.pm loaded ok ok 15 - Bio/DB/SeqFeature/Store/bdb.pm loaded ok ok 16 - Bio/DB/SeqFeature/Store/berkeleydb.pm loaded ok ok 17 - Bio/DB/SeqFeature/Store/berkeleydb3.pm loaded ok ok 18 - Bio/DB/SeqFeature/Store/memory.pm loaded ok ok 19 - bin/bp_seqfeature_delete compiled ok ok 20 - bin/bp_seqfeature_gff3 compiled ok ok 21 - bin/bp_seqfeature_load compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/SeqFeature.t ......... 1..116 ok 1 - use Bio::SeqFeature::Generic; ok 2 - use Bio::DB::SeqFeature::Store; ok 3 - use Bio::DB::SeqFeature::Store::GFF3Loader; ok 4 - use Bio::Root::IO; ok 5 - use Bio::DB::Fasta; ok 6 - use File::Copy; ok 7 ok 8 ok 9 ok 10 - adding a feature ok 11 ok 12 ok 13 ok 14 - adding a feature with no primary_id ok 15 ok 16 - searching for a feature that shouldnt exist ok 17 - simple type ok 18 - base type with colon ok 19 - base type alone ok 20 - queried types are not interpolated ok 21 ok 22 ok 23 - An object of class 'Bio::DB::GFF::Typename' isa 'Bio::DB::GFF::Typename' ok 24 - feature deletion ok 25 ok 26 ok 27 - adding subfeatures ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 - feature names should be case insensitive ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 - base type ok 65 - base:source type ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 - An object of class 'Bio::Location::Split' isa 'Bio::Location::Split' ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 - keyword search; 1 term ok 103 - keyword search; 2 terms ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 112 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 113 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 114 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 115 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok All tests successful. Files=4, Tests=137, 4 wallclock secs ( 0.02 usr 0.00 sys + 1.18 cusr 0.20 csys = 1.40 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/ make -j5 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' Manifying 1 pod document Manifying 20 pod documents Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3 Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-seqfeature-perl' in '../libbio-db-seqfeature-perl_1.7.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/10757/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10757/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10757 and its subdirectories I: Current time: Fri Dec 26 14:21:34 +14 2025 I: pbuilder-time-stamp: 1766708494 + false + set +x Fri Dec 26 00:21:34 UTC 2025 I: Signing ./b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo as libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc Fri Dec 26 00:21:34 UTC 2025 I: Signed ./b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo as ./b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc Fri Dec 26 00:21:34 UTC 2025 - build #2 for libbio-db-seqfeature-perl/trixie/i386 on infom08-i386 done. Starting cleanup. All cleanup done. Fri Dec 26 00:21:34 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-57ec21HK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H: total 76 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 17:57 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 17:58 b2 -rw-r--r-- 1 jenkins jenkins 2477 Oct 11 11:06 libbio-db-seqfeature-perl_1.7.5-1.dsc -rw------- 1 jenkins jenkins 61226 Nov 22 17:57 rbuildlog.3rrKz1I /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1: total 536 -rw-r--r-- 1 jenkins jenkins 57240 Nov 22 17:57 build.log -rw-r--r-- 1 jenkins jenkins 2312 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1.dsc -rw-r--r-- 1 jenkins jenkins 166068 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_all.deb -rw-r--r-- 1 jenkins jenkins 7249 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8131 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1351 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1825 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 274481 Nov 22 17:57 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2: total 528 -rw-r--r-- 1 jenkins jenkins 59163 Nov 22 17:58 build.log -rw-r--r-- 1 jenkins jenkins 2312 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1.dsc -rw-r--r-- 1 jenkins jenkins 166068 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1_all.deb -rw-r--r-- 1 jenkins jenkins 7258 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8140 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1351 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1825 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 274481 Nov 22 17:58 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz Fri Nov 22 17:58:35 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. Fri Nov 22 17:58:36 UTC 2024 I: libbio-db-seqfeature-perl_1.7.5-1_i386.changes: Format: 1.8 Date: Fri, 11 Oct 2024 12:41:29 +0200 Source: libbio-db-seqfeature-perl Binary: libbio-db-seqfeature-perl Architecture: all Version: 1.7.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-db-seqfeature-perl - Normalized feature for use with Bio::DB::SeqFeature::Store Changes: libbio-db-seqfeature-perl (1.7.5-1) unstable; urgency=medium . * New upstream version 1.7.5 * d/control: declare compliance to standards version 4.7.0. * d/copyright: update upstream copyright year. * d/control: add myself to uploaders. Checksums-Sha1: f8e449cb6ffa379170e614495cfe8e8733277ba6 166068 libbio-db-seqfeature-perl_1.7.5-1_all.deb 3610ccb74947d7140dcded9b85cc1498fad127cb 7249 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo Checksums-Sha256: 01f386cc6ed1f869e7e400daea4f5bd12156946b0a8b6cc7513526629c5b4a9a 166068 libbio-db-seqfeature-perl_1.7.5-1_all.deb b73c9ed01895c3b2c0a2d41a7c78f08e15305592e6e6b81361681ff5c9521187 7249 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo Files: 6268e32aa8f7c8ed028c3468fed2082b 166068 perl optional libbio-db-seqfeature-perl_1.7.5-1_all.deb 85a5f3fcb69541890e17bff40db59c89 7249 perl optional libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 17:57:44.488760845 +0000 +++ b2/build.log 2024-11-22 17:58:35.286451043 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 05:57:14 -12 2024 -I: pbuilder-time-stamp: 1732298234 +I: Current time: Fri Dec 26 14:20:46 +14 2025 +I: pbuilder-time-stamp: 1766708446 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 26 00:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='cb16da670e5d4940be663e7abc143172' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3963' - PS1='# ' - PS2='> ' + INVOCATION_ID=bca931f98a024f86b2596fc7d0b79800 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10757 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_9b39 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1 --logfile b1/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/pbuilderrc_bftd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2 --logfile b2/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3963/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -222,7 +254,7 @@ Get: 99 http://deb.debian.org/debian trixie/main i386 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libtest-most-perl all 0.38-1 [25.1 kB] -Fetched 33.5 MB in 0s (83.2 MB/s) +Fetched 33.5 MB in 2s (19.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -648,7 +680,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes dpkg-buildpackage: info: source package libbio-db-seqfeature-perl dpkg-buildpackage: info: source version 1.7.5-1 dpkg-buildpackage: info: source distribution unstable @@ -670,28 +706,28 @@ Writing Makefile for Bio::DB::SeqFeature Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j6 + make -j5 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' -cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm -cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm -cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm -cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm +cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm -cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm -cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm -cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm -cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm -cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm -cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm -cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm -cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm +cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm -cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm +cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm +cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm +cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm +cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm +cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm +cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm +cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm +cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm +cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm +cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm +cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3 cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load @@ -702,7 +738,7 @@ Manifying 20 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_auto_test - make -j6 test TEST_VERBOSE=1 + make -j5 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... @@ -851,60 +887,60 @@ ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok All tests successful. -Files=4, Tests=137, 4 wallclock secs ( 0.02 usr 0.02 sys + 1.86 cusr 0.24 csys = 2.14 CPU) +Files=4, Tests=137, 4 wallclock secs ( 0.02 usr 0.00 sys + 1.18 cusr 0.20 csys = 1.40 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/ - make -j6 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j5 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' Manifying 1 pod document Manifying 20 pod documents Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm -Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3 +Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5' dh_installdocs dh_installchangelogs @@ -927,12 +963,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10757/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3963 and its subdirectories -I: Current time: Fri Nov 22 05:57:43 -12 2024 -I: pbuilder-time-stamp: 1732298263 +I: removing directory /srv/workspace/pbuilder/10757 and its subdirectories +I: Current time: Fri Dec 26 14:21:34 +14 2025 +I: pbuilder-time-stamp: 1766708494 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.diff: 82.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.diff.gz b2/build.log: 80.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.1% -- replaced with stdout Fri Nov 22 17:58:37 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbio-db-seqfeature-perl_trixie_i386_1732298317 + touch /var/log/reproducible-builds/diffoscope_stamp_libbio-db-seqfeature-perl_trixie_i386_1732298317 + RESULT=0 + systemd-run '--description=diffoscope on libbio-db-seqfeature-perl/1.7.5-1 in trixie/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_19-31267 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H --run-session -c jenkins-reproducible-trixie-diffoscope-4cf79644-d42c-43fe-8766-f20df19dcc97 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/dbd-tmp-1ODxtxo ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1/libbio-db-seqfeature-perl_1.7.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2/libbio-db-seqfeature-perl_1.7.5-1_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_19-31267.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b1/libbio-db-seqfeature-perl_1.7.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gt8T7p3H/b2/libbio-db-seqfeature-perl_1.7.5-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.329s) 0.329s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 624ms CPU time consumed: 622ms _ _ _ _ _ _ _ __ | (_) |__ | |__ (_) ___ __| | |__ ___ ___ __ _ / _| ___ __ _ | | | '_ \| '_ \| |/ _ \ _____ / _` | '_ \ _____/ __|/ _ \/ _` | |_ / _ \/ _` | | | | |_) | |_) | | (_) |_____| (_| | |_) |_____\__ \ __/ (_| | _| __/ (_| | |_|_|_.__/|_.__/|_|\___/ \__,_|_.__/ |___/\___|\__, |_| \___|\__,_| |_| _ _ | |_ _ _ _ __ ___ _ __ ___ _ __| | | __| | | | '__/ _ \_____| '_ \ / _ \ '__| | | |_| |_| | | | __/_____| |_) | __/ | | | \__|\__,_|_| \___| | .__/ \___|_| |_| |_| Fri Nov 22 17:58:37 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 17:58:37 UTC 2024 I: libbio-db-seqfeature-perl from trixie built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 17:58:38] INFO: Starting at 2024-11-22 17:58:38.560604 [2024-11-22 17:58:38] INFO: Generating the pages of 1 package(s) [2024-11-22 17:58:38] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/libbio-db-seqfeature-perl didn't produce a buildlog, even though it has been built. [2024-11-22 17:58:38] INFO: Finished at 2024-11-22 17:58:38.916537, took: 0:00:00.355939 Fri Nov 22 17:58:38 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/libbio-db-seqfeature-perl.html Fri Nov 22 17:58:39 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 17:58:39 UTC 2024 I: Submitting 8.0K b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc https://buildinfo.debian.net/3610ccb74947d7140dcded9b85cc1498fad127cb/libbio-db-seqfeature-perl_1.7.5-1_all Fri Nov 22 17:58:39 UTC 2024 I: Submitting 8.0K b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc https://buildinfo.debian.net/33fb23dcd63e56f2f666a9544d5d9aa7cb9e56c3/libbio-db-seqfeature-perl_1.7.5-1_all Fri Nov 22 17:58:40 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 17:58:40 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 17:58:40 UTC 2024 I: Removing signed libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc files: removed './b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc' removed './b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc' 1732298320 i386 trixie libbio-db-seqfeature-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.rbuild.log: 78.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/libbio-db-seqfeature-perl_1.7.5-1.rbuild.log.gz [2024-11-22 17:58:40] INFO: Starting at 2024-11-22 17:58:40.853521 [2024-11-22 17:58:40] INFO: Generating the pages of 1 package(s) [2024-11-22 17:58:41] INFO: Finished at 2024-11-22 17:58:41.207167, took: 0:00:00.353653 All cleanup done. Fri Nov 22 17:58:41 UTC 2024 - total duration: 0h 1m 36s. Fri Nov 22 17:58:41 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Wrejm1dV, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 39.890s CPU time consumed: 6.824s