Running as unit: rb-build-i386_2-38101.service ==================================================================================== Mon Sep 30 00:13:17 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_2) on jenkins, called using "ionos6-i386 ionos2-i386" as arguments. Mon Sep 30 00:13:17 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-OF0GIJW0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 30 00:13:17 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Mon Sep 30 00:13:17 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-Qz0Wlz' Mon Sep 30 00:13:17 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Mon Sep 30 00:13:17 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-aq2X2V' ok, let's check if probalign is building anywhere yet… ok, probalign is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of probalign in trixie on i386 on jenkins now. 1st build will be done on ionos6-i386.debian.net. 2nd build will be done on ionos2-i386.debian.net. ============================================================================= Mon Sep 30 00:13:25 UTC 2024 I: starting to build probalign/trixie/i386 on jenkins on '2024-09-30 00:13' Mon Sep 30 00:13:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/38101/console.log 1727655205 i386 trixie probalign Mon Sep 30 00:13:25 UTC 2024 I: Downloading source for trixie/probalign=1.4-10 --2024-09-30 00:13:25-- http://deb.debian.org/debian/pool/main/p/probalign/probalign_1.4-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1971 (1.9K) [text/prs.lines.tag] Saving to: ‘probalign_1.4-10.dsc’ 0K . 100% 197M=0s 2024-09-30 00:13:25 (197 MB/s) - ‘probalign_1.4-10.dsc’ saved [1971/1971] --2024-09-30 00:13:25-- http://deb.debian.org/debian/pool/main/p/probalign/probalign_1.4-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1971 (1.9K) [text/prs.lines.tag] Saving to: ‘probalign_1.4-10.dsc’ 0K . 100% 197M=0s 2024-09-30 00:13:25 (197 MB/s) - ‘probalign_1.4-10.dsc’ saved [1971/1971] Mon Sep 30 00:13:25 UTC 2024 I: probalign_1.4-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: probalign Binary: probalign Architecture: any Version: 1.4-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://web.njit.edu/~usman/probalign/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/probalign Vcs-Git: https://salsa.debian.org/med-team/probalign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: probalign deb science optional arch=any Checksums-Sha1: b03b52e084da024780dfe051213c11e664592aeb 30060 probalign_1.4.orig.tar.gz a9bf04ea52818bfd737645c96f4235b813e15fad 4916 probalign_1.4-10.debian.tar.xz Checksums-Sha256: b221a27c5cbc3e5c707b0514c71301806074a2bf54047b57bd2d40497b663c29 30060 probalign_1.4.orig.tar.gz c28a26c9c36682e17dfd5da67b29058ba750b6d1dcb694003ee8cf52f141cfc3 4916 probalign_1.4-10.debian.tar.xz Files: 255d6ab775867a54d3727764b8dff561 30060 probalign_1.4.orig.tar.gz 37ad63fb22faa20345333dd9a2e6c6e6 4916 probalign_1.4-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPJQxERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGh/w//d9nUAzZDMLKfSmVCj0MGGKCxs7AJiBYa 1r219oAiSyFT0vO+NlRu1bgMRdkrJ5K31KZP0riZQLhmwtdJCqet0ucvfaftaAzD SHeeigdFCijW7HMY7CjdVt8VW0jsV7TgonbGB9BPZjYr9gu/zZlmLnV6rL6IKGl/ QhXgVPP3akG11afV+yG+n4vb0hMd31sh/I1ZJz242DNhqYUHXsr2i1BBptTrji9i RMw/wMdrIBq2bU1Wilctum7Jk/FpxaqOWO93GhRQFyOaduO7ZS5zb6YSyQfUwIsy YIgW92NLd0+qGLzRyp8N8974a5wewydiMVQiyE5HFkT2OkOcf/pKeS0PML8F09p3 811Of+Pc/3YaVnn2EV8ypBJbKygyG94M9Oei9Msj9Wgr8c3OkagqEDCde27HCQAB DgUs8DktA9Zh9x3jysRLLMdFqM0cZu+BLNeDS8iCyD4KI9QqG39GbzEk1UfTF1z+ 50z40fIuPdLY+P+h+7Dl/kpvf0ynoFQYcpRSmerlk0U9tbUaRfeEYyvJ0AkId0dA sRa6RUUC3ElgqYnWCcbCUd+ukcSzhsEXIPAm+4PAZl4vGAaxbA812oAUrTuBSeNa /RbpPyho9Ly9Fe7LNheD54Mz0FUE1X4Nmxdwv+cDNL0dxN3LkxARneXO+CdnifvP lui2mPieYXA= =8del -----END PGP SIGNATURE----- Mon Sep 30 00:13:25 UTC 2024 I: Checking whether the package is not for us Mon Sep 30 00:13:25 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Mon Sep 30 00:13:25 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Mon Sep 30 00:13:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Mon Sep 30 00:13:25 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-C6Glam' ==================================================================================== Sun Nov 2 06:36:26 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos6-i386, called using "1 probalign trixie /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W 1.4-10" as arguments. Sun Nov 2 06:36:26 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-YC7fE2ny" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 2 06:36:26 UTC 2025 I: Downloading source for trixie/probalign=1.4-10 Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian trixie/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian trixie/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (3421 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian trixie/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian trixie/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (3421 kB/s) Download complete and in download only mode ============================================================================= Building probalign in trixie on i386 on ionos6-i386 now. Date: Sun Nov 2 07:36:27 CET 2025 Date UTC: Sun Nov 2 06:36:27 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 1 18:36:27 -12 2025 I: pbuilder-time-stamp: 1762065387 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 19 13:18:09 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0d1a790b8fed474badb4d373a6c52683' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='123426' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_Kvqk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1 --logfile b1/build.log probalign_1.4-10.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 76.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Fetched 20.3 MB in 0s (89.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-8_i386.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j22 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_i386.deb'. dpkg-deb: building package 'probalign' in '../probalign_1.4-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_i386.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/123426 and its subdirectories I: Current time: Sat Nov 1 18:37:02 -12 2025 I: pbuilder-time-stamp: 1762065422 Sun Nov 2 06:37:02 UTC 2025 I: Signing ./b1/probalign_1.4-10_i386.buildinfo as probalign_1.4-10_i386.buildinfo.asc Sun Nov 2 06:37:02 UTC 2025 I: Signed ./b1/probalign_1.4-10_i386.buildinfo as ./b1/probalign_1.4-10_i386.buildinfo.asc Sun Nov 2 06:37:02 UTC 2025 - build #1 for probalign/trixie/i386 on ionos6-i386 done. Starting cleanup. All cleanup done. Sun Nov 2 06:37:02 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-YC7fE2ny, removing. /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 30 00:14 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 30 00:13 b2 -rw-r--r-- 1 jenkins jenkins 1971 Jan 19 2023 probalign_1.4-10.dsc -rw------- 1 jenkins jenkins 3071 Sep 30 00:13 rbuildlog.a8eoiYI /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1: total 680 -rw-r--r-- 1 jenkins jenkins 25421 Sep 30 00:14 build.log -rw-r--r-- 1 jenkins jenkins 555236 Sep 30 00:14 probalign-dbgsym_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 4916 Sep 30 00:14 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Sep 30 00:14 probalign_1.4-10.dsc -rw-r--r-- 1 jenkins jenkins 4896 Sep 30 00:14 probalign_1.4-10_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 5778 Sep 30 00:14 probalign_1.4-10_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Sep 30 00:14 probalign_1.4-10_i386.changes -rw-r--r-- 1 jenkins jenkins 64052 Sep 30 00:14 probalign_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 1233 Sep 30 00:14 probalign_1.4-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2: total 0 Mon Sep 30 00:14:03 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 1 18:36:27 -12 2025 I: pbuilder-time-stamp: 1762065387 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 19 13:18:09 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0d1a790b8fed474badb4d373a6c52683' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='123426' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_Kvqk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1 --logfile b1/build.log probalign_1.4-10.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 76.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Fetched 20.3 MB in 0s (89.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. 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Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j22 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_i386.deb'. dpkg-deb: building package 'probalign' in '../probalign_1.4-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_i386.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/123426 and its subdirectories I: Current time: Sat Nov 1 18:37:02 -12 2025 I: pbuilder-time-stamp: 1762065422 Mon Sep 30 00:14:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Mon Sep 30 00:14:04 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Mon Sep 30 00:14:04 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Mon Sep 30 00:14:04 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-vEBBIb' ==================================================================================== Mon Sep 30 00:14:05 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos2-i386, called using "2 probalign trixie /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W 1.4-10" as arguments. Mon Sep 30 00:14:05 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-UH1CIlIT" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 30 00:14:05 UTC 2024 I: Downloading source for trixie/probalign=1.4-10 Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian trixie/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian trixie/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (1159 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian trixie/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian trixie/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (1159 kB/s) Download complete and in download only mode ============================================================================= Re-Building probalign in trixie on i386 on ionos2-i386 now. Date: Mon Sep 30 02:14:05 CEST 2024 Date UTC: Mon Sep 30 00:14:05 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_7ceD + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' probalign = debian-installer -o probalign = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' probalign = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_7ceD --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2 --logfile b2/build.log probalign_1.4-10.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 30 14:14:06 +14 2024 I: pbuilder-time-stamp: 1727655246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 19 13:18:09 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 30 00:14 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=f035b55f28d947a4bba5b43a129fa53d LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=43472 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_7ceD --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2 --logfile b2/build.log probalign_1.4-10.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After unpacking 76.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Fetched 20.3 MB in 1s (38.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-8_i386.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/43472/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/43472/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_i386.deb'. dpkg-deb: building package 'probalign' in '../probalign_1.4-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_i386.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/43472/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/43472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/43472 and its subdirectories I: Current time: Mon Sep 30 14:15:05 +14 2024 I: pbuilder-time-stamp: 1727655305 + false + set +x Mon Sep 30 00:15:05 UTC 2024 I: Signing ./b2/probalign_1.4-10_i386.buildinfo as probalign_1.4-10_i386.buildinfo.asc Mon Sep 30 00:15:05 UTC 2024 I: Signed ./b2/probalign_1.4-10_i386.buildinfo as ./b2/probalign_1.4-10_i386.buildinfo.asc Mon Sep 30 00:15:05 UTC 2024 - build #2 for probalign/trixie/i386 on ionos2-i386 done. Starting cleanup. All cleanup done. Mon Sep 30 00:15:05 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-UH1CIlIT, removing. /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Sep 30 00:14 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 30 00:15 b2 -rw-r--r-- 1 jenkins jenkins 1971 Jan 19 2023 probalign_1.4-10.dsc -rw------- 1 jenkins jenkins 28775 Sep 30 00:14 rbuildlog.a8eoiYI /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1: total 680 -rw-r--r-- 1 jenkins jenkins 25421 Sep 30 00:14 build.log -rw-r--r-- 1 jenkins jenkins 555236 Sep 30 00:14 probalign-dbgsym_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 4916 Sep 30 00:14 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Sep 30 00:14 probalign_1.4-10.dsc -rw-r--r-- 1 jenkins jenkins 4896 Sep 30 00:14 probalign_1.4-10_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 5778 Sep 30 00:14 probalign_1.4-10_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Sep 30 00:14 probalign_1.4-10_i386.changes -rw-r--r-- 1 jenkins jenkins 64052 Sep 30 00:14 probalign_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 1233 Sep 30 00:14 probalign_1.4-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2: total 676 -rw-r--r-- 1 jenkins jenkins 27323 Sep 30 00:15 build.log -rw-r--r-- 1 jenkins jenkins 555236 Sep 30 00:15 probalign-dbgsym_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 4916 Sep 30 00:15 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Sep 30 00:15 probalign_1.4-10.dsc -rw-r--r-- 1 jenkins jenkins 4896 Sep 30 00:15 probalign_1.4-10_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 5778 Sep 30 00:15 probalign_1.4-10_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Sep 30 00:15 probalign_1.4-10_i386.changes -rw-r--r-- 1 jenkins jenkins 64052 Sep 30 00:15 probalign_1.4-10_i386.deb -rw-r--r-- 1 jenkins jenkins 1233 Sep 30 00:15 probalign_1.4-10_source.changes Mon Sep 30 00:15:06 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Mon Sep 30 00:15:07 UTC 2024 I: probalign_1.4-10_i386.changes: Format: 1.8 Date: Thu, 19 Jan 2023 14:15:16 +0100 Source: probalign Binary: probalign probalign-dbgsym Architecture: i386 Version: 1.4-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: probalign - multiple sequence alignment using partition function posterior pr Changes: probalign (1.4-10) unstable; urgency=medium . * Fix Homepage and download location * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 7420f48cc4848b1b6f75154603b911e559b16657 555236 probalign-dbgsym_1.4-10_i386.deb 9152ca282d62762b29c94f857007140e71b47043 4896 probalign_1.4-10_i386.buildinfo 23e8ba2e5b8ab21e421346e3f7ba13fafab73c52 64052 probalign_1.4-10_i386.deb Checksums-Sha256: bb3ce29de1a4dcc0668a8770408953f748c026a0518bd3767a0f3753078891f6 555236 probalign-dbgsym_1.4-10_i386.deb 79c967cf1da8ae033bf7f1ea0ebe4621e03159c262fc45b529308369a7bf0b47 4896 probalign_1.4-10_i386.buildinfo 5be6ab4e667aa6d5404ddab8d945d79efd1e8964200cf83b21de1858ded61c9d 64052 probalign_1.4-10_i386.deb Files: 41e60bfbebc7ecd1857ca37fdacd8869 555236 debug optional probalign-dbgsym_1.4-10_i386.deb f74ebc7cf846439591c0ad204d218fb3 4896 science optional probalign_1.4-10_i386.buildinfo 6d3807195f794e793da159e063de1304 64052 science optional probalign_1.4-10_i386.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/probalign_1.4-10.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/probalign_1.4-10.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/probalign_1.4-10.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/probalign_1.4-10.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/i386/probalign_1.4-10_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/probalign_1.4-10.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-09-30 00:14:03.458267989 +0000 +++ b2/build.log 2024-09-30 00:15:06.219602629 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 1 18:36:27 -12 2025 -I: pbuilder-time-stamp: 1762065387 +I: Current time: Mon Sep 30 14:14:06 +14 2024 +I: pbuilder-time-stamp: 1727655246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,54 +32,86 @@ dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 30 00:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='0d1a790b8fed474badb4d373a6c52683' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='123426' - PS1='# ' - PS2='> ' + INVOCATION_ID=f035b55f28d947a4bba5b43a129fa53d + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=43472 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_Kvqk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1 --logfile b1/build.log probalign_1.4-10.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/pbuilderrc_7ceD --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2 --logfile b2/build.log probalign_1.4-10.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/123426/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -92,7 +124,7 @@ Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19770 files and directories currently installed.) +(Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -148,10 +180,10 @@ Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] -Fetched 20.3 MB in 0s (89.6 MB/s) +Fetched 20.3 MB in 1s (38.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19770 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. @@ -287,7 +319,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable @@ -297,7 +333,7 @@ debian/rules clean dh clean dh_auto_clean - make -j22 clean + make -j10 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' @@ -308,7 +344,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j22 "INSTALL=install --strip-program=true" + make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, @@ -446,12 +482,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/43472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/123426 and its subdirectories -I: Current time: Sat Nov 1 18:37:02 -12 2025 -I: pbuilder-time-stamp: 1762065422 +I: removing directory /srv/workspace/pbuilder/43472 and its subdirectories +I: Current time: Mon Sep 30 14:15:05 +14 2024 +I: pbuilder-time-stamp: 1727655305 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/probalign_1.4-10.diff: 68.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/probalign_1.4-10.diff.gz b2/build.log: 75.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 76.0% -- replaced with stdout Mon Sep 30 00:15:08 UTC 2024 I: diffoscope 278 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_probalign_trixie_i386_1727655308 + touch /var/log/reproducible-builds/diffoscope_stamp_probalign_trixie_i386_1727655308 + RESULT=0 + systemd-run '--description=diffoscope on probalign/1.4-10 in trixie/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_2-38101 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W --run-session -c jenkins-reproducible-trixie-diffoscope-9cf77815-f405-415c-9801-c79a0c74c929 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/dbd-tmp-nwVh1x6 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1/probalign_1.4-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2/probalign_1.4-10_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_2-38101.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/probalign_1.4-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b1/probalign_1.4-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.oGn7uG8W/b2/probalign_1.4-10_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.478s) 0.478s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 890ms CPU time consumed: 885ms _ _ _ _ __ _ __ ___ | |__ __ _| (_) __ _ _ __ | '_ \| '__/ _ \| '_ \ / _` | | |/ _` | '_ \ | |_) | | | (_) | |_) | (_| | | | (_| | | | | | .__/|_| \___/|_.__/ \__,_|_|_|\__, |_| |_| |_| |___/ Mon Sep 30 00:53:47 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 30 00:53:47 UTC 2024 I: probalign from trixie built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-30 00:53:48] INFO: Starting at 2024-09-30 00:53:48.454716 [2024-09-30 00:53:48] INFO: Generating the pages of 1 package(s) [2024-09-30 00:53:49] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/probalign didn't produce a buildlog, even though it has been built. [2024-09-30 00:53:50] INFO: Finished at 2024-09-30 00:53:50.652016, took: 0:00:02.197307 Mon Sep 30 00:53:50 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/probalign.html Mon Sep 30 00:53:50 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Sep 30 00:53:51 UTC 2024 I: Submitting 8.0K b1/probalign_1.4-10_i386.buildinfo.asc https://buildinfo.debian.net/9152ca282d62762b29c94f857007140e71b47043/probalign_1.4-10_i386 Mon Sep 30 00:53:54 UTC 2024 I: Submitting 8.0K b2/probalign_1.4-10_i386.buildinfo.asc https://buildinfo.debian.net/0a965e83cce30b29d12fd6624242aca8c2fb26ad/probalign_1.4-10_i386 Mon Sep 30 00:54:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Sep 30 00:54:14 UTC 2024 I: Done submitting .buildinfo files. Mon Sep 30 00:54:14 UTC 2024 I: Removing signed probalign_1.4-10_i386.buildinfo.asc files: removed './b1/probalign_1.4-10_i386.buildinfo.asc' removed './b2/probalign_1.4-10_i386.buildinfo.asc' 1727657654 i386 trixie probalign Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/probalign_1.4-10.rbuild.log: 72.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/probalign_1.4-10.rbuild.log.gz [2024-09-30 00:54:14] INFO: Starting at 2024-09-30 00:54:14.667520 [2024-09-30 00:54:14] INFO: Generating the pages of 1 package(s) [2024-09-30 00:54:15] INFO: Finished at 2024-09-30 00:54:15.355217, took: 0:00:00.687707 All cleanup done. Mon Sep 30 00:54:15 UTC 2024 - total duration: 0h 40m 30s. Mon Sep 30 00:54:15 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-OF0GIJW0, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 40min 58.559s CPU time consumed: 10.430s