Running as unit: rb-build-i386_2-46999.service ==================================================================================== Fri Nov 29 18:27:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_2) on jenkins, called using "ionos6-i386 ionos2-i386" as arguments. Fri Nov 29 18:27:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Ir5f8KHy" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 29 18:27:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Fri Nov 29 18:27:09 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-3c3PoY' Fri Nov 29 18:27:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Fri Nov 29 18:27:09 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-HDVNEJ' ok, let's check if r-bioc-ioniser is building anywhere yet… ok, r-bioc-ioniser is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-ioniser in experimental on i386 on jenkins now. 1st build will be done on ionos6-i386.debian.net. 2nd build will be done on ionos2-i386.debian.net. ============================================================================= Fri Nov 29 18:27:16 UTC 2024 I: starting to build r-bioc-ioniser/experimental/i386 on jenkins on '2024-11-29 18:27' Fri Nov 29 18:27:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/46999/console.log 1732904836 i386 experimental r-bioc-ioniser Fri Nov 29 18:27:16 UTC 2024 I: Downloading source for experimental/r-bioc-ioniser=2.30.0+dfsg-1 --2024-11-29 18:27:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-ioniser/r-bioc-ioniser_2.30.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2361 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-ioniser_2.30.0+dfsg-1.dsc’ 0K .. 100% 341M=0s 2024-11-29 18:27:16 (341 MB/s) - ‘r-bioc-ioniser_2.30.0+dfsg-1.dsc’ saved [2361/2361] --2024-11-29 18:27:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-ioniser/r-bioc-ioniser_2.30.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2361 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-ioniser_2.30.0+dfsg-1.dsc’ 0K .. 100% 341M=0s 2024-11-29 18:27:16 (341 MB/s) - ‘r-bioc-ioniser_2.30.0+dfsg-1.dsc’ saved [2361/2361] Fri Nov 29 18:27:16 UTC 2024 I: r-bioc-ioniser_2.30.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-ioniser Binary: r-bioc-ioniser Architecture: all Version: 2.30.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/IONiseR/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle Package-List: r-bioc-ioniser deb gnu-r optional arch=all Checksums-Sha1: e43c86191a1c88e720661decaa2db02e435f69f2 1088188 r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz 027b2b4f3a11582bb3226725445c626d04b0d8a9 3556 r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz Checksums-Sha256: 517ed4aa0cfc685053b83ec1a35bcbf59152aee7195afd0b004f9d8e7afa12aa 1088188 r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz 583bee0a0e18385495afe3a149abc93d614216ec3ac68b1668c7cdba80e68117 3556 r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz Files: 804002d8ef2c0b254b3755748be61fd1 1088188 r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz 8b502cc3145dc127c14b633acfe5a10d 3556 r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdJvmwSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi2UIP/ijMPHnv7EHsv1aYqg4qtQGMR94fQ8Hi dsxjMiGYakOxK6Tvp4HMBBg8tZJnPtG8ArSSel/nZHYoi6mxkFLGRVInJykm2Auq sjuEx0WdLgju7gJjZ/96ZLCnhUZIiPylnwQ8IAaP9uz5b9uu/WZ9omIknG8rCHda HzBhVR6JIdGGVI8Q6POkzwMJN0dwndG6cWk8vB1BVpfrsz1h7UMrJIaCWorFJqQb 6pw+PtQ/GVtUsbdnqN9jIl+MGsqtmcBej/OAbZWSp+J58CSwk900Jl4i3elC1f1U qYffV5rzHxUz8ZDFF25JjEI87XbKgR+4WQLQys6O653+8pV0Js4336aSF4uU5QCS yaKaBSkpi/hrlRVcLUigDWM3YqJc3QKlZ9usqFn8UkIN3269eHT+uLpatTz4WxIB GQBXbOTZQkyOgPXowy9hK6NMDBxkrGB45yA70s+FlGVzW44dXVPUZo0FC83cN+16 sOBw5yTiZ4+GL6KGifnLtws1oHLVuJrD5RhSytcGme/M0l3knjpLzXmB7H/hcOgI 1KvsH8Y7t9o54hv5IwqSv9RUM5aLuzixSj8b+FR7ka+xU7H9QEhQfwUztr9VWcDt h8enoVEJocEqItNUP2tQWxjJz78+SNpHB58vpL9m+P3I7A1K55DbT74tqbjVYGws 1AadrbkIkJYq =YqlB -----END PGP SIGNATURE----- Fri Nov 29 18:27:16 UTC 2024 I: Checking whether the package is not for us Fri Nov 29 18:27:16 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Nov 29 18:27:16 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Nov 29 18:27:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Fri Nov 29 18:27:16 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-qrAHtb' ==================================================================================== Fri Jan 2 00:50:17 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos6-i386, called using "1 r-bioc-ioniser experimental /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5 2.30.0+dfsg-1" as arguments. Fri Jan 2 00:50:17 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-oFySMrOD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Jan 2 00:50:17 UTC 2026 I: Downloading source for experimental/r-bioc-ioniser=2.30.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-ioniser' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1094 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (dsc) [2361 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (tar) [1088 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (diff) [3556 B] Fetched 1094 kB in 0s (55.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-ioniser' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1094 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (dsc) [2361 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (tar) [1088 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main r-bioc-ioniser 2.30.0+dfsg-1 (diff) [3556 B] Fetched 1094 kB in 0s (55.5 MB/s) Download complete and in download only mode ============================================================================= Building r-bioc-ioniser in experimental on i386 on ionos6-i386 now. Date: Fri Jan 2 01:50:17 CET 2026 Date UTC: Fri Jan 2 00:50:17 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 1 12:50:17 -12 2026 I: pbuilder-time-stamp: 1767315017 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-ioniser_2.30.0+dfsg-1.dsc] I: copying [./r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz] I: copying [./r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 13:15:24 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ioniser_2.30.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ioniser in r-bioc-ioniser-2.30.0+dfsg dpkg-source: info: unpacking r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying IONiseR.Rmd-fix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/41744/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f12b5d8b9b15466ebc89bec156450834' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='41744' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/pbuilderrc_NuEY --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/b1 --logfile b1/build.log r-bioc-ioniser_2.30.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/41744/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however: Package r-cran-magrittr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however: Package r-cran-tidyr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-shortread; however: Package r-bioc-shortread is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tibble; however: Package r-cran-tibble is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bit64; however: Package r-cran-bit64 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocstyle; however: Package r-bioc-biocstyle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-cran-bit{a} r-cran-bit64{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-bslib r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-formatr r-cran-formattable r-cran-fs r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mime r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 239 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After unpacking 436 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-rhdf5 which is a virtual package and is not provided by any available package Depends: r-bioc-shortread which is a virtual package and is not provided by any available package Depends: r-bioc-biostrings which is a virtual package and is not provided by any available package Depends: r-bioc-xvector which is a virtual package and is not provided by any available package Depends: r-bioc-biocparallel which is a virtual package and is not provided by any available package Depends: r-bioc-biocstyle but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-cran-bit{a} r-cran-bit64{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-bslib r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-formatr r-cran-formattable r-cran-fs r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mime r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 239 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After unpacking 436 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/41744 and its subdirectories Starting cleanup. All cleanup done. Fri Jan 2 00:50:32 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-oFySMrOD, removing. /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 29 18:27 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 29 18:27 b2 -rw-r--r-- 1 jenkins jenkins 2361 Nov 29 13:16 r-bioc-ioniser_2.30.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 3556 Nov 29 18:27 rbuildlog.LIVUlRT /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/b1: total 24 -rw-r--r-- 1 jenkins jenkins 20788 Nov 29 18:27 build.log /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/b2: total 0 Fri Nov 29 18:27:33 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 1 12:50:17 -12 2026 I: pbuilder-time-stamp: 1767315017 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-ioniser_2.30.0+dfsg-1.dsc] I: copying [./r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz] I: copying [./r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 13:15:24 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ioniser_2.30.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ioniser in r-bioc-ioniser-2.30.0+dfsg dpkg-source: info: unpacking r-bioc-ioniser_2.30.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ioniser_2.30.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying IONiseR.Rmd-fix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/41744/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f12b5d8b9b15466ebc89bec156450834' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='41744' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/pbuilderrc_NuEY --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7jNO1gx5/b1 --logfile b1/build.log r-bioc-ioniser_2.30.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/41744/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however: Package r-cran-magrittr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however: Package r-cran-tidyr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-shortread; however: Package r-bioc-shortread is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tibble; however: Package r-cran-tibble is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bit64; however: Package r-cran-bit64 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocstyle; however: Package r-bioc-biocstyle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-cran-bit{a} r-cran-bit64{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-bslib r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-formatr r-cran-formattable r-cran-fs r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mime r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 239 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After unpacking 436 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-rhdf5 which is a virtual package and is not provided by any available package Depends: r-bioc-shortread which is a virtual package and is not provided by any available package Depends: r-bioc-biostrings which is a virtual package and is not provided by any available package Depends: r-bioc-xvector which is a virtual package and is not provided by any available package Depends: r-bioc-biocparallel which is a virtual package and is not provided by any available package Depends: r-bioc-biocstyle but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-cran-bit{a} r-cran-bit64{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-bslib r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-formatr r-cran-formattable r-cran-fs r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mime r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 239 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After unpacking 436 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/41744 and its subdirectories r-bioc-ioniser failed to build from source. Fri Nov 29 18:27:34 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 76.6% -- replaced with stdout Fri Nov 29 18:27:34 UTC 2024 W: Downloading the build dependencies failed Fri Nov 29 18:27:34 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 29 18:27:34 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-29 18:27:34] INFO: Starting at 2024-11-29 18:27:34.784412 [2024-11-29 18:27:34] INFO: Generating the pages of 1 package(s) [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:35] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/i386/r-bioc-ioniser didn't produce a buildlog, even though it has been built. [2024-11-29 18:27:35] INFO: Finished at 2024-11-29 18:27:35.231484, took: 0:00:00.447076 Fri Nov 29 18:27:35 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/i386/r-bioc-ioniser.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/r-bioc-ioniser_2.30.0+dfsg-1.rbuild.log: 73.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/r-bioc-ioniser_2.30.0+dfsg-1.rbuild.log.gz [2024-11-29 18:27:35] INFO: Starting at 2024-11-29 18:27:35.620501 [2024-11-29 18:27:35] INFO: Generating the pages of 1 package(s) [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-ioniser_2.28.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-ioniser_2.28.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/r-bioc-ioniser_2.30.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/r-bioc-ioniser_2.30.0+dfsg-1.diff.gz is missing [2024-11-29 18:27:36] INFO: Finished at 2024-11-29 18:27:36.266335, took: 0:00:00.645838 All cleanup done. Fri Nov 29 18:27:36 UTC 2024 - total duration: 0h 0m 25s. Fri Nov 29 18:27:36 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Ir5f8KHy, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 27.419s CPU time consumed: 4.908s