Running as unit: rb-build-i386_2-47026.service ==================================================================================== Fri Nov 29 18:46:24 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_2) on jenkins, called using "ionos6-i386 ionos2-i386" as arguments. Fri Nov 29 18:46:24 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Ye5t8dz4" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 29 18:46:24 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Fri Nov 29 18:46:24 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-F2Qq2k' Fri Nov 29 18:46:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Fri Nov 29 18:46:25 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-laAzqU' ok, let's check if jalview is building anywhere yet… ok, jalview is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of jalview in unstable on i386 on jenkins now. 1st build will be done on ionos6-i386.debian.net. 2nd build will be done on ionos2-i386.debian.net. ============================================================================= Fri Nov 29 18:46:27 UTC 2024 I: starting to build jalview/unstable/i386 on jenkins on '2024-11-29 18:46' Fri Nov 29 18:46:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/47026/console.log 1732905987 i386 unstable jalview Fri Nov 29 18:46:27 UTC 2024 I: Downloading source for unstable/jalview=2.11.4.0+dfsg-3 --2024-11-29 18:46:27-- http://deb.debian.org/debian/pool/main/j/jalview/jalview_2.11.4.0%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2735 (2.7K) [text/prs.lines.tag] Saving to: ‘jalview_2.11.4.0+dfsg-3.dsc’ 0K .. 100% 343M=0s 2024-11-29 18:46:27 (343 MB/s) - ‘jalview_2.11.4.0+dfsg-3.dsc’ saved [2735/2735] --2024-11-29 18:46:27-- http://deb.debian.org/debian/pool/main/j/jalview/jalview_2.11.4.0%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2735 (2.7K) [text/prs.lines.tag] Saving to: ‘jalview_2.11.4.0+dfsg-3.dsc’ 0K .. 100% 343M=0s 2024-11-29 18:46:27 (343 MB/s) - ‘jalview_2.11.4.0+dfsg-3.dsc’ saved [2735/2735] Fri Nov 29 18:46:27 UTC 2024 I: jalview_2.11.4.0+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: jalview Binary: jalview Architecture: all Version: 2.11.4.0+dfsg-3 Maintainer: Debian Java Maintainers Uploaders: Pierre Gruet Homepage: https://www.jalview.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/java-team/jalview Vcs-Git: https://salsa.debian.org/java-team/jalview.git Testsuite: autopkgtest Testsuite-Triggers: xauth, xvfb Build-Depends: debhelper-compat (= 13), po-debconf, default-jdk, javahelper, gradle-debian-helper, maven-repo-helper Build-Depends-Indep: groovy, javahelp2, libapache-mime4j-java, libaxis-java, libbiojava6-java, libcommons-math3-java, libguava-java , libhtsjdk-java, libhttpclient-java, libhttpcore-java, libhttpmime-java, libintervalstorej-java, libjaba-client-java, libjaxb-java, libjaxb-api-java, libjaxrs-api-java, libjersey1-client-java, libjersey1-core-java, libjetty9-java, libjfreesvg-java, libjmol-java (>= 14.30.2+dfsg-1~), libjson-simple-java, libjsoup-java, libjswingreader-java, liblog4j2-java, libmiglayout-java, libmockito-java , libslf4j-java, libvamsas-client-java, varna, libandroid-json-org-java , testng Package-List: jalview deb science optional arch=all Checksums-Sha1: 7f981f8e8cbd8ca9467b5996e24a570d6076bd8d 343464264 jalview_2.11.4.0+dfsg.orig.tar.xz 8ab9ef3a9fd0dc972fde8519db34bf4f1fc73fba 62740 jalview_2.11.4.0+dfsg-3.debian.tar.xz Checksums-Sha256: a780a7307633b22378b4845f088a648cec6e9da8bbd414092e7156e4da28ea47 343464264 jalview_2.11.4.0+dfsg.orig.tar.xz 8149ab8274cec7ee352b2c2d3a627e60ee7eb04769770d298395bffc997b1cc3 62740 jalview_2.11.4.0+dfsg-3.debian.tar.xz Files: eaae49f42f395443d59e1d6052f5a5fa 343464264 jalview_2.11.4.0+dfsg.orig.tar.xz b49066c39e3dfafbd388eb08c687b4c5 62740 jalview_2.11.4.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmcCP2AACgkQYAMWptwn dHZu0xAApsRTtLqJH45H1kPKOQd1HMITRMIMsAds4MPgRsCqxsxrK0taICd4mMxL PCsox0bePwVca80za+9yPBZW75oMqUzHPYS2pZq5ow/GmOAX+o8NSnoEjtfpw2nr PRH+J9jS6D20xCvqL9jKUwhMqsX4fRGE9kbQxuZRqOKcObiqm0KqDGAkut9L6A5g 2P5cYD13onFNOZYaJErmh+5FREZ88nczbwyrOz0lzK6MV9mnNOa7ldRycTC4R+0R nt14+yGN3ffU9CltgeJRL/TOFTsQ5Jrf7mC6NYvm0+HPKtMzdP8pqEDEKbALlw/j yplvbnolDxzBZ+qars/4DY33lfXgWzWvApgcfJIDG+YLTh/hUtR3in78e4jdg5zF cR7pwOCv1egt6CBLEseLmLx1hADtlygkUseaZPu03AV8LaOKl6rbAmYxkIf1TPyD ZQGGl5CTRFWqRPM6xookDbYuBVS+uZTQIvp0U9wnZo7LLDgho2z5/tzFVRgYO31F 4vtCcXGMGt2+qlt7SDlcrWW3tHY2KMDt5rIO5dFp2kQUj1l5mgPqKtVcMgY777Gk 14Eiuv5c3M1C+8QBMI8J1Y+UHX/S74g9klq1xvI8tuJ1w5/mJBwSO9D4Rm1LdsSB q/Ydy4RxmqwyFQaBjjmjklOdP52t+ARDWUURSbMaksh49yoY3yQ= =YOp/ -----END PGP SIGNATURE----- Fri Nov 29 18:46:27 UTC 2024 I: Checking whether the package is not for us Fri Nov 29 18:46:27 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Nov 29 18:46:27 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Nov 29 18:46:27 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Fri Nov 29 18:46:27 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-BuPvPO' ==================================================================================== Fri Jan 2 01:09:28 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos6-i386, called using "1 jalview unstable /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt 2.11.4.0+dfsg-3" as arguments. Fri Jan 2 01:09:28 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-BzP6Nwcv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Jan 2 01:09:28 UTC 2026 I: Downloading source for unstable/jalview=2.11.4.0+dfsg-3 Reading package lists... NOTICE: 'jalview' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/jalview.git Please use: git clone https://salsa.debian.org/java-team/jalview.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 344 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (dsc) [2735 B] Get:2 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (tar) [343 MB] Get:3 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (diff) [62.7 kB] Fetched 344 MB in 5s (65.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'jalview' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/jalview.git Please use: git clone https://salsa.debian.org/java-team/jalview.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 344 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (dsc) [2735 B] Get:2 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (tar) [343 MB] Get:3 http://deb.debian.org/debian unstable/main jalview 2.11.4.0+dfsg-3 (diff) [62.7 kB] Fetched 344 MB in 5s (65.1 MB/s) Download complete and in download only mode ============================================================================= Building jalview in unstable on i386 on ionos6-i386 now. Date: Fri Jan 2 02:09:34 CET 2026 Date UTC: Fri Jan 2 01:09:34 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 1 13:09:36 -12 2026 I: pbuilder-time-stamp: 1767316176 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [jalview_2.11.4.0+dfsg-3.dsc] I: copying [./jalview_2.11.4.0+dfsg.orig.tar.xz] I: copying [./jalview_2.11.4.0+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 6 07:42:24 2024 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./jalview_2.11.4.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting jalview in jalview-2.11.4.0+dfsg dpkg-source: info: unpacking jalview_2.11.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking jalview_2.11.4.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_gradle.patch dpkg-source: info: applying newer-mime4j-api.diff dpkg-source: info: applying change_package_jfree.patch dpkg-source: info: applying get_rid_of_quaqua.patch dpkg-source: info: applying using_right_json_simple_package.patch dpkg-source: info: applying deactivate_getdown.patch dpkg-source: info: applying deactivate_classgraph.patch dpkg-source: info: applying deactivate_google_analytics.patch dpkg-source: info: applying selecting_tests_in_build_gradle.patch dpkg-source: info: applying write_build_properties.patch dpkg-source: info: applying no_applet.patch dpkg-source: info: applying timestamp_from_changelog.patch dpkg-source: info: applying groovy_syntax.patch dpkg-source: info: applying deactivate_flatlaf.patch dpkg-source: info: applying unneeded_checks_when_launching.patch dpkg-source: info: applying waiting_launcher.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/107090/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c6f4703b9ec746e898029b0800d8a69e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='107090' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/pbuilderrc_9LIP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/b1 --logfile b1/build.log jalview_2.11.4.0+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/107090/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), po-debconf, default-jdk, javahelper, gradle-debian-helper, maven-repo-helper, groovy, javahelp2, libapache-mime4j-java, libaxis-java, libbiojava6-java, libcommons-math3-java, libguava-java, libhtsjdk-java, libhttpclient-java, libhttpcore-java, libhttpmime-java, libintervalstorej-java, libjaba-client-java, libjaxb-java, libjaxb-api-java, libjaxrs-api-java, libjersey1-client-java, libjersey1-core-java, libjetty9-java, libjfreesvg-java, libjmol-java (>= 14.30.2+dfsg-1~), libjson-simple-java, libjsoup-java, libjswingreader-java, liblog4j2-java, libmiglayout-java, libmockito-java, libslf4j-java, libvamsas-client-java, varna, libandroid-json-org-java, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on po-debconf; however: Package po-debconf is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on groovy; however: Package groovy is not installed. pbuilder-satisfydepends-dummy depends on javahelp2; however: Package javahelp2 is not installed. pbuilder-satisfydepends-dummy depends on libapache-mime4j-java; however: Package libapache-mime4j-java is not installed. pbuilder-satisfydepends-dummy depends on libaxis-java; however: Package libaxis-java is not installed. pbuilder-satisfydepends-dummy depends on libbiojava6-java; however: Package libbiojava6-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpclient-java; however: Package libhttpclient-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpcore-java; however: Package libhttpcore-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpmime-java; however: Package libhttpmime-java is not installed. pbuilder-satisfydepends-dummy depends on libintervalstorej-java; however: Package libintervalstorej-java is not installed. pbuilder-satisfydepends-dummy depends on libjaba-client-java; however: Package libjaba-client-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxb-java; however: Package libjaxb-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxb-api-java; however: Package libjaxb-api-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxrs-api-java; however: Package libjaxrs-api-java is not installed. pbuilder-satisfydepends-dummy depends on libjersey1-client-java; however: Package libjersey1-client-java is not installed. pbuilder-satisfydepends-dummy depends on libjersey1-core-java; however: Package libjersey1-core-java is not installed. pbuilder-satisfydepends-dummy depends on libjetty9-java; however: Package libjetty9-java is not installed. pbuilder-satisfydepends-dummy depends on libjfreesvg-java; however: Package libjfreesvg-java is not installed. pbuilder-satisfydepends-dummy depends on libjmol-java (>= 14.30.2+dfsg-1~); however: Package libjmol-java is not installed. pbuilder-satisfydepends-dummy depends on libjson-simple-java; however: Package libjson-simple-java is not installed. pbuilder-satisfydepends-dummy depends on libjsoup-java; however: Package libjsoup-java is not installed. pbuilder-satisfydepends-dummy depends on libjswingreader-java; however: Package libjswingreader-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j2-java; however: Package liblog4j2-java is not installed. pbuilder-satisfydepends-dummy depends on libmiglayout-java; however: Package libmiglayout-java is not installed. pbuilder-satisfydepends-dummy depends on libmockito-java; however: Package libmockito-java is not installed. pbuilder-satisfydepends-dummy depends on libslf4j-java; however: Package libslf4j-java is not installed. pbuilder-satisfydepends-dummy depends on libvamsas-client-java; however: Package libvamsas-client-java is not installed. pbuilder-satisfydepends-dummy depends on varna; however: Package varna is not installed. pbuilder-satisfydepends-dummy depends on libandroid-json-org-java; however: Package libandroid-json-org-java is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelp2{a} javahelper{a} junit4{a} libactivation-java{a} libandroid-json-org-java{a} libantlr-java{a} libantlr4-runtime-java{a} libaopalliance-java{a} libapache-mime4j-java{a} libapache-pom-java{a} libapfloat-java{a} libapparmor1{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libaxis-java{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbiojava6-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo-gobject2{a} libcairo2{a} libcastor-core-java{a} libcastor-xml-java{a} libcdi-api-java{a} libciftools-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcodemodel-java{a} libcolord2{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-discovery-java{a} libcommons-exec-java{a} libcommons-httpclient-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libexec-maven-plugin-java{a} libexpat1{a} 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libjs-jquery{a} libjsch-java{a} libjson-simple-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjsr311-api-java{a} libjswingreader-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjws-api-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm19{a} liblog4j1.2-java{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmail-java{a} libmaven-archiver-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-jar-plugin-java{a} libmaven-parent-java{a} libmaven-resolver-1.6-java{a} libmaven-resolver-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libmiglayout-java{a} libminlog-java{a} libmmtf-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmsgpack-java{a} libnaga-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox-java{a} libqdox2-java{a} libreadline8t64{a} libreflectasm-java{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsaaj-java{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libstax-ex-java{a} libstreambuffer-java{a} libsub-quote-perl{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libvamsas-client-java{a} libvecmath-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwebsocket-api-java{a} libwsdl4j-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} varna{a} wdiff{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnss-systemd liboro-java libreflectasm-java-doc libregexp-java librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 454 newly installed, 0 to remove and 0 not upgraded. Need to get 407 MB of archives. After unpacking 1006 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libhtsjdk-java but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelp2{a} javahelper{a} junit4{a} libactivation-java{a} libandroid-json-org-java{a} libantlr-java{a} libantlr4-runtime-java{a} libaopalliance-java{a} libapache-mime4j-java{a} libapache-pom-java{a} libapfloat-java{a} libapparmor1{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libaxis-java{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbiojava6-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo-gobject2{a} libcairo2{a} libcastor-core-java{a} libcastor-xml-java{a} libcdi-api-java{a} libciftools-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcodemodel-java{a} libcolord2{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-discovery-java{a} libcommons-exec-java{a} libcommons-httpclient-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libexec-maven-plugin-java{a} libexpat1{a} libfastinfoset-java{a} libfastutil-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libhttpmime-java{a} libicu72{a} libimport-into-perl{a} libinchi1.07{a} libintervalstorej-java{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libitext5-java{a} libjaba-client-java{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjaxrs-api-java{a} libjaxws-api-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjersey1-client-java{a} libjersey1-core-java{a} libjetty9-java{a} libjformatstring-java{a} libjfreesvg-java{a} libjgit-java{a} libjgrapht-java{a} libjgraphx-java{a} libjheaps-java{a} libjline2-java{a} libjmol-java{a} libjna-java{a} libjna-jni{a} libjni-inchi-java{a} libjni-inchi-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjson-simple-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjsr311-api-java{a} libjswingreader-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} 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libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox-java{a} libqdox2-java{a} libreadline8t64{a} libreflectasm-java{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsaaj-java{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libstax-ex-java{a} libstreambuffer-java{a} libsub-quote-perl{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libvamsas-client-java{a} libvecmath-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwebsocket-api-java{a} libwsdl4j-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} varna{a} wdiff{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnss-systemd liboro-java libreflectasm-java-doc libregexp-java librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 454 newly installed, 0 to remove and 0 not upgraded. Need to get 407 MB of archives. After unpacking 1006 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/107090 and its subdirectories Starting cleanup. All cleanup done. Fri Jan 2 01:10:34 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-BzP6Nwcv, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 29 18:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 29 18:46 b2 -rw-r--r-- 1 jenkins jenkins 2735 Oct 6 07:52 jalview_2.11.4.0+dfsg-3.dsc -rw------- 1 jenkins jenkins 3872 Nov 29 18:46 rbuildlog.SfqDQgq /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/b1: total 32 -rw-r--r-- 1 jenkins jenkins 31122 Nov 29 18:47 build.log /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/b2: total 0 Fri Nov 29 18:47:36 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 1 13:09:36 -12 2026 I: pbuilder-time-stamp: 1767316176 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [jalview_2.11.4.0+dfsg-3.dsc] I: copying [./jalview_2.11.4.0+dfsg.orig.tar.xz] I: copying [./jalview_2.11.4.0+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 6 07:42:24 2024 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./jalview_2.11.4.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting jalview in jalview-2.11.4.0+dfsg dpkg-source: info: unpacking jalview_2.11.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking jalview_2.11.4.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_gradle.patch dpkg-source: info: applying newer-mime4j-api.diff dpkg-source: info: applying change_package_jfree.patch dpkg-source: info: applying get_rid_of_quaqua.patch dpkg-source: info: applying using_right_json_simple_package.patch dpkg-source: info: applying deactivate_getdown.patch dpkg-source: info: applying deactivate_classgraph.patch dpkg-source: info: applying deactivate_google_analytics.patch dpkg-source: info: applying selecting_tests_in_build_gradle.patch dpkg-source: info: applying write_build_properties.patch dpkg-source: info: applying no_applet.patch dpkg-source: info: applying timestamp_from_changelog.patch dpkg-source: info: applying groovy_syntax.patch dpkg-source: info: applying deactivate_flatlaf.patch dpkg-source: info: applying unneeded_checks_when_launching.patch dpkg-source: info: applying waiting_launcher.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/107090/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c6f4703b9ec746e898029b0800d8a69e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='107090' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/pbuilderrc_9LIP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wFL3ODbt/b1 --logfile b1/build.log jalview_2.11.4.0+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/107090/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), po-debconf, default-jdk, javahelper, gradle-debian-helper, maven-repo-helper, groovy, javahelp2, libapache-mime4j-java, libaxis-java, libbiojava6-java, libcommons-math3-java, libguava-java, libhtsjdk-java, libhttpclient-java, libhttpcore-java, libhttpmime-java, libintervalstorej-java, libjaba-client-java, libjaxb-java, libjaxb-api-java, libjaxrs-api-java, libjersey1-client-java, libjersey1-core-java, libjetty9-java, libjfreesvg-java, libjmol-java (>= 14.30.2+dfsg-1~), libjson-simple-java, libjsoup-java, libjswingreader-java, liblog4j2-java, libmiglayout-java, libmockito-java, libslf4j-java, libvamsas-client-java, varna, libandroid-json-org-java, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on po-debconf; however: Package po-debconf is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on groovy; however: Package groovy is not installed. pbuilder-satisfydepends-dummy depends on javahelp2; however: Package javahelp2 is not installed. pbuilder-satisfydepends-dummy depends on libapache-mime4j-java; however: Package libapache-mime4j-java is not installed. pbuilder-satisfydepends-dummy depends on libaxis-java; however: Package libaxis-java is not installed. pbuilder-satisfydepends-dummy depends on libbiojava6-java; however: Package libbiojava6-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpclient-java; however: Package libhttpclient-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpcore-java; however: Package libhttpcore-java is not installed. pbuilder-satisfydepends-dummy depends on libhttpmime-java; however: Package libhttpmime-java is not installed. pbuilder-satisfydepends-dummy depends on libintervalstorej-java; however: Package libintervalstorej-java is not installed. pbuilder-satisfydepends-dummy depends on libjaba-client-java; however: Package libjaba-client-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxb-java; however: Package libjaxb-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxb-api-java; however: Package libjaxb-api-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxrs-api-java; however: Package libjaxrs-api-java is not installed. pbuilder-satisfydepends-dummy depends on libjersey1-client-java; however: Package libjersey1-client-java is not installed. pbuilder-satisfydepends-dummy depends on libjersey1-core-java; however: Package libjersey1-core-java is not installed. pbuilder-satisfydepends-dummy depends on libjetty9-java; however: Package libjetty9-java is not installed. pbuilder-satisfydepends-dummy depends on libjfreesvg-java; however: Package libjfreesvg-java is not installed. pbuilder-satisfydepends-dummy depends on libjmol-java (>= 14.30.2+dfsg-1~); however: Package libjmol-java is not installed. pbuilder-satisfydepends-dummy depends on libjson-simple-java; however: Package libjson-simple-java is not installed. pbuilder-satisfydepends-dummy depends on libjsoup-java; however: Package libjsoup-java is not installed. pbuilder-satisfydepends-dummy depends on libjswingreader-java; however: Package libjswingreader-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j2-java; however: Package liblog4j2-java is not installed. pbuilder-satisfydepends-dummy depends on libmiglayout-java; however: Package libmiglayout-java is not installed. pbuilder-satisfydepends-dummy depends on libmockito-java; however: Package libmockito-java is not installed. pbuilder-satisfydepends-dummy depends on libslf4j-java; however: Package libslf4j-java is not installed. pbuilder-satisfydepends-dummy depends on libvamsas-client-java; however: Package libvamsas-client-java is not installed. pbuilder-satisfydepends-dummy depends on varna; however: Package varna is not installed. pbuilder-satisfydepends-dummy depends on libandroid-json-org-java; however: Package libandroid-json-org-java is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelp2{a} javahelper{a} junit4{a} libactivation-java{a} libandroid-json-org-java{a} libantlr-java{a} libantlr4-runtime-java{a} libaopalliance-java{a} libapache-mime4j-java{a} libapache-pom-java{a} libapfloat-java{a} libapparmor1{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libaxis-java{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbiojava6-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo-gobject2{a} libcairo2{a} libcastor-core-java{a} libcastor-xml-java{a} libcdi-api-java{a} libciftools-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcodemodel-java{a} libcolord2{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-discovery-java{a} libcommons-exec-java{a} libcommons-httpclient-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libexec-maven-plugin-java{a} libexpat1{a} libfastinfoset-java{a} libfastutil-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libhttpmime-java{a} libicu72{a} libimport-into-perl{a} libinchi1.07{a} libintervalstorej-java{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libitext5-java{a} libjaba-client-java{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjaxrs-api-java{a} libjaxws-api-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjersey1-client-java{a} libjersey1-core-java{a} libjetty9-java{a} libjformatstring-java{a} libjfreesvg-java{a} libjgit-java{a} libjgrapht-java{a} libjgraphx-java{a} libjheaps-java{a} libjline2-java{a} libjmol-java{a} libjna-java{a} libjna-jni{a} libjni-inchi-java{a} libjni-inchi-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjson-simple-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjsr311-api-java{a} libjswingreader-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjws-api-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm19{a} liblog4j1.2-java{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmail-java{a} libmaven-archiver-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-jar-plugin-java{a} libmaven-parent-java{a} libmaven-resolver-1.6-java{a} libmaven-resolver-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libmiglayout-java{a} libminlog-java{a} libmmtf-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmsgpack-java{a} libnaga-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox-java{a} libqdox2-java{a} libreadline8t64{a} libreflectasm-java{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsaaj-java{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libstax-ex-java{a} libstreambuffer-java{a} libsub-quote-perl{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libvamsas-client-java{a} libvecmath-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwebsocket-api-java{a} libwsdl4j-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} varna{a} wdiff{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnss-systemd liboro-java libreflectasm-java-doc libregexp-java librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 454 newly installed, 0 to remove and 0 not upgraded. Need to get 407 MB of archives. After unpacking 1006 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libhtsjdk-java but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelp2{a} javahelper{a} junit4{a} libactivation-java{a} libandroid-json-org-java{a} libantlr-java{a} libantlr4-runtime-java{a} libaopalliance-java{a} libapache-mime4j-java{a} libapache-pom-java{a} libapfloat-java{a} libapparmor1{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libaxis-java{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbiojava6-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo-gobject2{a} libcairo2{a} libcastor-core-java{a} libcastor-xml-java{a} libcdi-api-java{a} libciftools-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcodemodel-java{a} libcolord2{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-discovery-java{a} libcommons-exec-java{a} libcommons-httpclient-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libexec-maven-plugin-java{a} libexpat1{a} libfastinfoset-java{a} libfastutil-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libhttpmime-java{a} libicu72{a} libimport-into-perl{a} libinchi1.07{a} libintervalstorej-java{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libitext5-java{a} libjaba-client-java{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjaxrs-api-java{a} libjaxws-api-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjersey1-client-java{a} libjersey1-core-java{a} libjetty9-java{a} libjformatstring-java{a} libjfreesvg-java{a} libjgit-java{a} libjgrapht-java{a} libjgraphx-java{a} libjheaps-java{a} libjline2-java{a} libjmol-java{a} libjna-java{a} libjna-jni{a} libjni-inchi-java{a} libjni-inchi-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjson-simple-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjsr311-api-java{a} libjswingreader-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjws-api-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm19{a} liblog4j1.2-java{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmail-java{a} libmaven-archiver-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-jar-plugin-java{a} libmaven-parent-java{a} libmaven-resolver-1.6-java{a} libmaven-resolver-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libmiglayout-java{a} libminlog-java{a} libmmtf-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmsgpack-java{a} libnaga-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox-java{a} libqdox2-java{a} libreadline8t64{a} libreflectasm-java{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsaaj-java{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libstax-ex-java{a} libstreambuffer-java{a} libsub-quote-perl{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libvamsas-client-java{a} libvecmath-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwebsocket-api-java{a} libwsdl4j-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} varna{a} wdiff{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnss-systemd liboro-java libreflectasm-java-doc libregexp-java librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 454 newly installed, 0 to remove and 0 not upgraded. Need to get 407 MB of archives. After unpacking 1006 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/107090 and its subdirectories jalview failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/jalview_2.11.4.0+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/jalview_2.11.4.0+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/jalview_2.11.4.0+dfsg-3.build1.log.gz' Fri Nov 29 18:47:37 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 79.5% -- replaced with stdout Fri Nov 29 18:47:37 UTC 2024 W: Downloading the build dependencies failed Fri Nov 29 18:47:37 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 29 18:47:37 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-29 18:47:38] INFO: Starting at 2024-11-29 18:47:38.534320 [2024-11-29 18:47:38] INFO: Generating the pages of 1 package(s) [2024-11-29 18:47:38] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:38] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/jalview didn't produce a buildlog, even though it has been built. [2024-11-29 18:47:38] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:38] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/jalview_2.11.2.5+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/jalview_2.11.2.5+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/jalview_2.11.2.5+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/jalview_2.11.2.5+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] INFO: Finished at 2024-11-29 18:47:39.070392, took: 0:00:00.536077 Fri Nov 29 18:47:39 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/jalview.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/jalview_2.11.4.0+dfsg-3.rbuild.log: 76.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/jalview_2.11.4.0+dfsg-3.rbuild.log.gz [2024-11-29 18:47:39] INFO: Starting at 2024-11-29 18:47:39.445114 [2024-11-29 18:47:39] INFO: Generating the pages of 1 package(s) [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/jalview_2.11.4.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/jalview_2.11.4.0+dfsg-3.diff.gz is missing [2024-11-29 18:47:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/jalview_2.11.2.5+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/jalview_2.11.2.5+dfsg-3.diff.gz is missing [2024-11-29 18:47:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/jalview_2.11.2.5+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/jalview_2.11.2.5+dfsg-3.diff.gz is missing [2024-11-29 18:47:40] INFO: Finished at 2024-11-29 18:47:40.080200, took: 0:00:00.635094 All cleanup done. Fri Nov 29 18:47:40 UTC 2024 - total duration: 0h 1m 13s. Fri Nov 29 18:47:40 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Ye5t8dz4, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 15.719s CPU time consumed: 5.270s