Running as unit: rb-build-i386_20-32833.service
====================================================================================
Thu Nov 21 09:31:28 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_20) on jenkins, called using "infom08-i386 infom07-i386" as arguments.
Thu Nov 21 09:31:28 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-PKDeoEdW"

$ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING

Thu Nov 21 09:31:28 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down.
Thu Nov 21 09:31:28 UTC 2024 - checking via ssh if infom08-i386.debian.net is up.
removed '/tmp/read-only-fs-test-qZtuaY'
Thu Nov 21 09:31:29 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down.
Thu Nov 21 09:31:29 UTC 2024 - checking via ssh if infom07-i386.debian.net is up.
removed '/tmp/read-only-fs-test-8d0Q14'
ok, let's check if r-bioc-decoupler is building anywhere yet…
ok, r-bioc-decoupler is not building anywhere…
UPDATE 1
=============================================================================
Initialising reproducibly build of r-bioc-decoupler in trixie on i386 on jenkins now. 
1st build will be done on infom08-i386.debian.net.
2nd build will be done on infom07-i386.debian.net.
=============================================================================
Thu Nov 21 09:31:47 UTC 2024  I: starting to build r-bioc-decoupler/trixie/i386 on jenkins on '2024-11-21 09:31'
Thu Nov 21 09:31:47 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_20/32833/console.log
1732181507 i386 trixie r-bioc-decoupler
Thu Nov 21 09:31:47 UTC 2024  I: Downloading source for trixie/r-bioc-decoupler=2.10.0+dfsg-1
--2024-11-21 09:31:47--  http://deb.debian.org/debian/pool/main/r/r-bioc-decoupler/r-bioc-decoupler_2.10.0%2bdfsg-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2315 (2.3K) [text/prs.lines.tag]
Saving to: ‘r-bioc-decoupler_2.10.0+dfsg-1.dsc’

     0K ..                                                    100%  325M=0s

2024-11-21 09:31:47 (325 MB/s) - ‘r-bioc-decoupler_2.10.0+dfsg-1.dsc’ saved [2315/2315]

--2024-11-21 09:31:47--  http://deb.debian.org/debian/pool/main/r/r-bioc-decoupler/r-bioc-decoupler_2.10.0%2bdfsg-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2315 (2.3K) [text/prs.lines.tag]
Saving to: ‘r-bioc-decoupler_2.10.0+dfsg-1.dsc’

     0K ..                                                    100%  325M=0s

2024-11-21 09:31:47 (325 MB/s) - ‘r-bioc-decoupler_2.10.0+dfsg-1.dsc’ saved [2315/2315]

Thu Nov 21 09:31:47 UTC 2024  I: r-bioc-decoupler_2.10.0+dfsg-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-decoupler
Binary: r-bioc-decoupler
Architecture: all
Version: 2.10.0+dfsg-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/decoupleR/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-decoupler
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-decoupler.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocparallel (>= 1.38.0), r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
Package-List:
 r-bioc-decoupler deb gnu-r optional arch=all
Checksums-Sha1:
 8c09c2c2dcd422a119ee2787159afb8d97534cc2 1962308 r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz
 8e2f85b41814853c99f68cff8e4c486d23c97bd5 3508 r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz
Checksums-Sha256:
 dd23a4bbf59b4bd0bf009ef8a8e368d94e2bb796f4533f3404e03d1066f12cde 1962308 r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz
 cbc0767105c08e4665ecd0ecf9bf4fa5dc248f2f62597551c08cb9985f57621a 3508 r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz
Files:
 6f283c8a4c637cb7f69042015c671386 1962308 r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz
 a813abed1e555bd4c82e64e46f0de099 3508 r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz

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Thu Nov 21 09:31:47 UTC 2024  I: Checking whether the package is not for us
Thu Nov 21 09:31:47 UTC 2024  I: Starting 1st build on remote node infom08-i386.debian.net.
Thu Nov 21 09:31:47 UTC 2024  I: Preparing to do remote build '1' on infom08-i386.debian.net.
Thu Nov 21 09:31:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down.
Thu Nov 21 09:31:47 UTC 2024 - checking via ssh if infom08-i386.debian.net is up.
removed '/tmp/read-only-fs-test-s1WfmG'
====================================================================================
Wed Dec 24 15:54:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-bioc-decoupler trixie /srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE 2.10.0+dfsg-1" as arguments.
Wed Dec 24 15:54:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-GzryPW4F"

$ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING

Wed Dec 24 15:54:49 UTC 2025  I: Downloading source for trixie/r-bioc-decoupler=2.10.0+dfsg-1
Reading package lists...
NOTICE: 'r-bioc-decoupler' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-decoupler.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-decoupler.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1968 kB of source archives.
Get:1 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (dsc) [2315 B]
Get:2 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (tar) [1962 kB]
Get:3 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (diff) [3508 B]
Fetched 1968 kB in 0s (6013 kB/s)
Download complete and in download only mode
Reading package lists...
NOTICE: 'r-bioc-decoupler' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-decoupler.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-decoupler.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1968 kB of source archives.
Get:1 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (dsc) [2315 B]
Get:2 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (tar) [1962 kB]
Get:3 http://deb.debian.org/debian trixie/main r-bioc-decoupler 2.10.0+dfsg-1 (diff) [3508 B]
Fetched 1968 kB in 0s (6013 kB/s)
Download complete and in download only mode
=============================================================================
Building r-bioc-decoupler in trixie on i386 on infom08-i386 now.
Date:     Wed Dec 24 15:54:50 UTC 2025
Date UTC: Wed Dec 24 15:54:50 UTC 2025
=============================================================================
W: /root/.pbuilderrc does not exist
I: Logging to b1/build.log
I: pbuilder: network access will be disabled during build
I: Current time: Wed Dec 24 03:54:50 -12 2025
I: pbuilder-time-stamp: 1766591690
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-decoupler_2.10.0+dfsg-1.dsc]
I: copying [./r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz]
I: copying [./r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Aug 16 11:28:43 2024 
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-decoupler_2.10.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-decoupler in r-bioc-decoupler-2.10.0+dfsg
dpkg-source: info: unpacking r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19518/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='05acc93edd24461c8000d2a9e4856483'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='19518'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/pbuilderrc_9rHW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/b1 --logfile b1/build.log r-bioc-decoupler_2.10.0+dfsg-1.dsc'
  SUDO_GID='111'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Aug  4  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/19518/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocparallel (>= 1.38.0), r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel (>= 1.38.0); however:
  Package r-bioc-biocparallel is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-broom; however:
  Package r-cran-broom is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however:
  Package r-cran-dplyr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however:
  Package r-cran-magrittr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-matrix; however:
  Package r-cran-matrix is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-parallelly; however:
  Package r-cran-parallelly is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-purrr; however:
  Package r-cran-purrr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-rlang; however:
  Package r-cran-rlang is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-stringr; however:
  Package r-cran-stringr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tibble; however:
  Package r-cran-tibble is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however:
  Package r-cran-tidyr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tidyselect; however:
  Package r-cran-tidyselect is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-withr; however:
  Package r-cran-withr is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-backports{a} r-cran-broom{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-generics{a} r-cran-glue{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-parallelly{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rlang{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-aer r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-digest r-cran-e1071 r-cran-emmeans r-cran-formattable r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggplot2 r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-knitr r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-maps r-cran-mass r-cran-mclust r-cran-metafor r-cran-mgcv r-cran-mockery r-cran-modeldata r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-progress r-cran-ps r-cran-psych r-cran-quantreg r-cran-rcpp r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-sandwich r-cran-scales r-cran-spelling r-cran-survey r-cran-survival r-cran-systemfit r-cran-testthat r-cran-tidyverse r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 211 newly installed, 0 to remove and 0 not upgraded.
Need to get 124 MB of archives. After unpacking 354 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: r-bioc-biocparallel (>= 1.38.0) which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-backports{a} r-cran-broom{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-generics{a} r-cran-glue{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-parallelly{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rlang{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-aer r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-digest r-cran-e1071 r-cran-emmeans r-cran-formattable r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggplot2 r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-knitr r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-maps r-cran-mass r-cran-mclust r-cran-metafor r-cran-mgcv r-cran-mockery r-cran-modeldata r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-progress r-cran-ps r-cran-psych r-cran-quantreg r-cran-rcpp r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-sandwich r-cran-scales r-cran-spelling r-cran-survey r-cran-survival r-cran-systemfit r-cran-testthat r-cran-tidyverse r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 211 newly installed, 0 to remove and 0 not upgraded.
Need to get 124 MB of archives. After unpacking 354 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/19518 and its subdirectories
Starting cleanup.
All cleanup done.
Wed Dec 24 15:55:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-GzryPW4F, removing.
/srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE:
total 16
drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 09:32 b1
drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 09:31 b2
-rw-r--r-- 1 jenkins jenkins 2315 Aug 16 11:31 r-bioc-decoupler_2.10.0+dfsg-1.dsc
-rw------- 1 jenkins jenkins 3504 Nov 21 09:31 rbuildlog.rJqFp0X

/srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/b1:
total 20
-rw-r--r-- 1 jenkins jenkins 18686 Nov 21 09:32 build.log

/srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/b2:
total 0
Thu Nov 21 09:32:12 UTC 2024  I: Deleting $TMPDIR on infom08-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Dec 24 03:54:50 -12 2025
I: pbuilder-time-stamp: 1766591690
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-decoupler_2.10.0+dfsg-1.dsc]
I: copying [./r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz]
I: copying [./r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Aug 16 11:28:43 2024 
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-decoupler_2.10.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-decoupler in r-bioc-decoupler-2.10.0+dfsg
dpkg-source: info: unpacking r-bioc-decoupler_2.10.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-decoupler_2.10.0+dfsg-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19518/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='05acc93edd24461c8000d2a9e4856483'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='19518'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/pbuilderrc_9rHW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B283EjlE/b1 --logfile b1/build.log r-bioc-decoupler_2.10.0+dfsg-1.dsc'
  SUDO_GID='111'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Aug  4  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/19518/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocparallel (>= 1.38.0), r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel (>= 1.38.0); however:
  Package r-bioc-biocparallel is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-broom; however:
  Package r-cran-broom is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however:
  Package r-cran-dplyr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however:
  Package r-cran-magrittr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-matrix; however:
  Package r-cran-matrix is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-parallelly; however:
  Package r-cran-parallelly is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-purrr; however:
  Package r-cran-purrr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-rlang; however:
  Package r-cran-rlang is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-stringr; however:
  Package r-cran-stringr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tibble; however:
  Package r-cran-tibble is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however:
  Package r-cran-tidyr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-tidyselect; however:
  Package r-cran-tidyselect is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-withr; however:
  Package r-cran-withr is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-backports{a} r-cran-broom{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-generics{a} r-cran-glue{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-parallelly{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rlang{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-aer r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-digest r-cran-e1071 r-cran-emmeans r-cran-formattable r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggplot2 r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-knitr r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-maps r-cran-mass r-cran-mclust r-cran-metafor r-cran-mgcv r-cran-mockery r-cran-modeldata r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-progress r-cran-ps r-cran-psych r-cran-quantreg r-cran-rcpp r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-sandwich r-cran-scales r-cran-spelling r-cran-survey r-cran-survival r-cran-systemfit r-cran-testthat r-cran-tidyverse r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 211 newly installed, 0 to remove and 0 not upgraded.
Need to get 124 MB of archives. After unpacking 354 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: r-bioc-biocparallel (>= 1.38.0) which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-backports{a} r-cran-broom{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-generics{a} r-cran-glue{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-parallelly{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rlang{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-aer r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-digest r-cran-e1071 r-cran-emmeans r-cran-formattable r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggplot2 r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-knitr r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-maps r-cran-mass r-cran-mclust r-cran-metafor r-cran-mgcv r-cran-mockery r-cran-modeldata r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-progress r-cran-ps r-cran-psych r-cran-quantreg r-cran-rcpp r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-sandwich r-cran-scales r-cran-spelling r-cran-survey r-cran-survival r-cran-systemfit r-cran-testthat r-cran-tidyverse r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 211 newly installed, 0 to remove and 0 not upgraded.
Need to get 124 MB of archives. After unpacking 354 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/19518 and its subdirectories
r-bioc-decoupler failed to build from source.
removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.rbuild.log'
removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.rbuild.log.gz'
removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.build1.log.gz'
Thu Nov 21 09:32:13 UTC 2024  W: No second build log, what happened?
Compressing the 1st log...
b1/build.log:	 75.8% -- replaced with stdout
Thu Nov 21 09:32:13 UTC 2024  W: Downloading the build dependencies failed
Thu Nov 21 09:32:13 UTC 2024  W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Thu Nov 21 09:32:13 UTC 2024  W: Network problems are automatically rescheduled after some hours.
INSERT 0 1
INSERT 0 1
DELETE 1
[2024-11-21 09:32:13] INFO: Starting at 2024-11-21 09:32:13.696083
[2024-11-21 09:32:13] INFO: Generating the pages of 1 package(s)
[2024-11-21 09:32:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:13] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-decoupler didn't produce a buildlog, even though it has been built.
[2024-11-21 09:32:13] INFO: Finished at 2024-11-21 09:32:13.945640, took: 0:00:00.249561

Thu Nov 21 09:32:14 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-decoupler.html

Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.rbuild.log:	 72.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.rbuild.log.gz
[2024-11-21 09:32:14] INFO: Starting at 2024-11-21 09:32:14.303274
[2024-11-21 09:32:14] INFO: Generating the pages of 1 package(s)
[2024-11-21 09:32:14] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:14] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:14] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:14] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-decoupler_2.10.0+dfsg-1.diff.gz is missing
[2024-11-21 09:32:14] INFO: Finished at 2024-11-21 09:32:14.562339, took: 0:00:00.259071
All cleanup done.
Thu Nov 21 09:32:14 UTC 2024 - total duration: 0h 0m 45s.
Thu Nov 21 09:32:14 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-PKDeoEdW, removing.
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 46.117s
CPU time consumed: 4.396s