Running as unit: rb-build-i386_20-33055.service ==================================================================================== Fri Nov 22 07:51:04 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_20) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Fri Nov 22 07:51:04 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Y9Nokhsw" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:51:04 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:51:04 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-Tj4vCQ' Fri Nov 22 07:51:04 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:51:04 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-5YPvPC' ok, let's check if r-bioc-mofa is building anywhere yet… ok, r-bioc-mofa is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-mofa in trixie on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Fri Nov 22 07:51:27 UTC 2024 I: starting to build r-bioc-mofa/trixie/i386 on jenkins on '2024-11-22 07:51' Fri Nov 22 07:51:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_20/33055/console.log 1732261887 i386 trixie r-bioc-mofa Fri Nov 22 07:51:27 UTC 2024 I: Downloading source for trixie/r-bioc-mofa=1.6.1+dfsg-13 --2024-11-22 07:51:27-- http://deb.debian.org/debian/pool/main/r/r-bioc-mofa/r-bioc-mofa_1.6.1%2bdfsg-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ 0K .. 100% 382M=0s 2024-11-22 07:51:27 (382 MB/s) - ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ saved [2529/2529] --2024-11-22 07:51:27-- http://deb.debian.org/debian/pool/main/r/r-bioc-mofa/r-bioc-mofa_1.6.1%2bdfsg-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ 0K .. 100% 382M=0s 2024-11-22 07:51:27 (382 MB/s) - ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ saved [2529/2529] Fri Nov 22 07:51:27 UTC 2024 I: r-bioc-mofa_1.6.1+dfsg-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-mofa Binary: r-bioc-mofa, python3-mofapy Architecture: all Version: 1.6.1+dfsg-13 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/MOFA/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-mofa Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py Package-List: python3-mofapy deb python optional arch=all r-bioc-mofa deb gnu-r optional arch=all Checksums-Sha1: 8ee4c92b87fcf39b8534aef972b6b52e01f042a9 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 4c9e5be172578e3b7c4efa2e006e29bbcbd02e5f 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz Checksums-Sha256: 5ac4a90a4e759c2789cb16c0cf740b52780f935863d1c832b438518d6eedea84 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 3f268cfe9f578762ea9ff33573a9fa5509e03494c5c21f2b0942933bd0997457 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz Files: 8e3302a2f6bd914b73984b7e4e55aa18 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 37cd8a14c7f29ca399ceb0ce77d0b866 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbBwigACgkQPCZ2P2xn 5uI44Q//a0iv/A7b9rUxo5GSf00engO1/Pj5cj7O8jCv9BwtFF0ihsQS69p/sGPu 6w7fsSlpt1f201m3V0eYU0sKEnoinDAxMi7kWWKpdcor6i6yNEbR+XV8r8KNYNZv YXdbL4+uSQjF2ynNREqCe03Ft3FXe46JmitYzYbje7RQ7BmIW3fgER9uc0uWbo7S YjfwcO3Edc2ESqVVb9K+4Wv9FN8oiNL3oRx/6TufPtvzDP6vdS+PFVgvzKGXdPFm 3j45Whqd8FWrD8f2sl23V7b2KaXIZOE2kO7QTx6Z1ZGTu122Y5J2tEcQhgxzMc8J LF+6/Ryhf67YZOF1a+vl/+i+QAwqO8tNZrq72ua0yccX9ehl9psiAoNy/XSJ4t/7 J+s4JXo6dB6NZsWmrqklVlMtP1G3TNeS0H5QB1ZEUlwD+mt+t6u+9vga0iBOoGEJ 5amhDQqFowEl5oVRWKTjIDNqzV59WVSeG37RvQnOLjxbsic7tUoWfqNyhMwTGO8u 5Am3v4WUnCOGYac2Fd8kKPQjm6m3z+eHVad2Y9IVmL0FMco3WoY0v/Xu00SS1ij0 QzBQcbi5aptE5zevYknssmQw0KXAELvoby/nwHv6Wj05vZirVpPGIZjf4vPObpZN 3kjq+SX3jfsAW55ntTMtY2qWvYoI4GD4li5QcWaxKAr6dwfJFVs= =gDKM -----END PGP SIGNATURE----- Fri Nov 22 07:51:27 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 07:51:27 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Fri Nov 22 07:51:27 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Fri Nov 22 07:51:27 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:51:27 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-EgFUrM' ==================================================================================== Thu Dec 25 14:14:28 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-bioc-mofa trixie /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU 1.6.1+dfsg-13" as arguments. Thu Dec 25 14:14:28 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-qsB3bxog" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 14:14:28 UTC 2025 I: Downloading source for trixie/r-bioc-mofa=1.6.1+dfsg-13 Reading package lists... NOTICE: 'r-bioc-mofa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 922 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (dsc) [2529 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (tar) [915 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (diff) [4272 B] Fetched 922 kB in 0s (4358 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-mofa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 922 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (dsc) [2529 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (tar) [915 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-mofa 1.6.1+dfsg-13 (diff) [4272 B] Fetched 922 kB in 0s (4358 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-mofa in trixie on i386 on infom08-i386 now. Date: Thu Dec 25 14:14:29 UTC 2025 Date UTC: Thu Dec 25 14:14:29 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 02:14:29 -12 2025 I: pbuilder-time-stamp: 1766672069 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-mofa_1.6.1+dfsg-13.dsc] I: copying [./r-bioc-mofa_1.6.1+dfsg.orig.tar.xz] I: copying [./r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 09:43:04 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-13.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-mofa in r-bioc-mofa-1.6.1+dfsg dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying r-api-bioc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23765/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='70ef24c742b24871ad0c5aa4f2fe19c5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23765' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/pbuilderrc_PrNw --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/b1 --logfile b1/build.log r-bioc-mofa_1.6.1+dfsg-13.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/23765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-multiassayexperiment; however: Package r-bioc-multiassayexperiment is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-beeswarm{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-abind r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-caret r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-emmeans r-cran-formattable r-cran-fs r-cran-geosphere r-cran-ggforce r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-seriation r-cran-shiny r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-vioplot r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 343 newly installed, 0 to remove and 0 not upgraded. Need to get 275 MB of archives. After unpacking 989 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-rhdf5 which is a virtual package and is not provided by any available package Depends: r-bioc-multiassayexperiment but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-beeswarm{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-abind r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-caret r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-emmeans r-cran-formattable r-cran-fs r-cran-geosphere r-cran-ggforce r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-seriation r-cran-shiny r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-vioplot r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 343 newly installed, 0 to remove and 0 not upgraded. Need to get 275 MB of archives. After unpacking 989 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23765 and its subdirectories Starting cleanup. All cleanup done. Thu Dec 25 14:14:41 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qsB3bxog, removing. /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:51 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:51 b2 -rw-r--r-- 1 jenkins jenkins 2529 Aug 18 09:50 r-bioc-mofa_1.6.1+dfsg-13.dsc -rw------- 1 jenkins jenkins 3683 Nov 22 07:51 rbuildlog.1EQbX1o /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/b1: total 28 -rw-r--r-- 1 jenkins jenkins 25664 Nov 22 07:51 build.log /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/b2: total 0 Fri Nov 22 07:51:42 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 02:14:29 -12 2025 I: pbuilder-time-stamp: 1766672069 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-mofa_1.6.1+dfsg-13.dsc] I: copying [./r-bioc-mofa_1.6.1+dfsg.orig.tar.xz] I: copying [./r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 09:43:04 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-13.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-mofa in r-bioc-mofa-1.6.1+dfsg dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying r-api-bioc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23765/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='70ef24c742b24871ad0c5aa4f2fe19c5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23765' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/pbuilderrc_PrNw --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NJgSSbWU/b1 --logfile b1/build.log r-bioc-mofa_1.6.1+dfsg-13.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/23765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-multiassayexperiment; however: Package r-bioc-multiassayexperiment is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-beeswarm{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-abind r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-caret r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-emmeans r-cran-formattable r-cran-fs r-cran-geosphere r-cran-ggforce r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-seriation r-cran-shiny r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-vioplot r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 343 newly installed, 0 to remove and 0 not upgraded. Need to get 275 MB of archives. After unpacking 989 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-rhdf5 which is a virtual package and is not provided by any available package Depends: r-bioc-multiassayexperiment but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran-14-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-beeswarm{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-abind r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-caret r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-emmeans r-cran-formattable r-cran-fs r-cran-geosphere r-cran-ggforce r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labelled r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-seriation r-cran-shiny r-cran-shinyjs r-cran-sna r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-vioplot r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 343 newly installed, 0 to remove and 0 not upgraded. Need to get 275 MB of archives. After unpacking 989 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23765 and its subdirectories r-bioc-mofa failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.build1.log.gz' Fri Nov 22 07:51:43 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 78.0% -- replaced with stdout Fri Nov 22 07:51:43 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 07:51:43 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 07:51:43 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 07:51:43] INFO: Starting at 2024-11-22 07:51:43.992908 [2024-11-22 07:51:44] INFO: Generating the pages of 1 package(s) [2024-11-22 07:51:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:44] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-mofa didn't produce a buildlog, even though it has been built. [2024-11-22 07:51:44] INFO: Finished at 2024-11-22 07:51:44.391220, took: 0:00:00.398320 Fri Nov 22 07:51:44 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-mofa.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.rbuild.log: 75.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.rbuild.log.gz [2024-11-22 07:51:44] INFO: Starting at 2024-11-22 07:51:44.799766 [2024-11-22 07:51:44] INFO: Generating the pages of 1 package(s) [2024-11-22 07:51:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-mofa_1.6.1+dfsg-13.diff.gz is missing [2024-11-22 07:51:45] INFO: Finished at 2024-11-22 07:51:45.232433, took: 0:00:00.432675 All cleanup done. Fri Nov 22 07:51:45 UTC 2024 - total duration: 0h 0m 39s. Fri Nov 22 07:51:45 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Y9Nokhsw, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 41.122s CPU time consumed: 5.001s