Running as unit: rb-build-i386_3-43863.service
====================================================================================
Fri Nov 22 07:28:45 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_3) on jenkins, called using "ionos2-i386 ionos16-i386" as arguments.
Fri Nov 22 07:28:45 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-I6FKvSo6"

$ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING

Fri Nov 22 07:28:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down.
Fri Nov 22 07:28:45 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up.
removed '/tmp/read-only-fs-test-PeF7Hc'
Fri Nov 22 07:28:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down.
Fri Nov 22 07:28:45 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up.
removed '/tmp/read-only-fs-test-LccBrX'
ok, let's check if psortb is building anywhere yet…
ok, psortb is not building anywhere…
UPDATE 1
=============================================================================
Initialising reproducibly build of psortb in bookworm on i386 on jenkins now. 
1st build will be done on ionos2-i386.debian.net.
2nd build will be done on ionos16-i386.debian.net.
=============================================================================
Fri Nov 22 07:29:00 UTC 2024  I: starting to build psortb/bookworm/i386 on jenkins on '2024-11-22 07:28'
Fri Nov 22 07:29:00 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/43863/console.log
1732260540 i386 bookworm psortb
Fri Nov 22 07:29:00 UTC 2024  I: Downloading source for bookworm/psortb=3.0.6+dfsg-3
--2024-11-22 07:29:00--  http://cdn-fastly.deb.debian.org/debian/pool/main/p/psortb/psortb_3.0.6%2bdfsg-3.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2217 (2.2K) [text/prs.lines.tag]
Saving to: ‘psortb_3.0.6+dfsg-3.dsc’

     0K ..                                                    100%  281M=0s

2024-11-22 07:29:00 (281 MB/s) - ‘psortb_3.0.6+dfsg-3.dsc’ saved [2217/2217]

--2024-11-22 07:29:00--  http://cdn-fastly.deb.debian.org/debian/pool/main/p/psortb/psortb_3.0.6%2bdfsg-3.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2217 (2.2K) [text/prs.lines.tag]
Saving to: ‘psortb_3.0.6+dfsg-3.dsc’

     0K ..                                                    100%  281M=0s

2024-11-22 07:29:00 (281 MB/s) - ‘psortb_3.0.6+dfsg-3.dsc’ saved [2217/2217]

Fri Nov 22 07:29:00 UTC 2024  I: psortb_3.0.6+dfsg-3.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: psortb
Binary: psortb
Architecture: any
Version: 3.0.6+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://www.psort.org/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/psortb
Vcs-Git: https://salsa.debian.org/med-team/psortb.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools
Package-List:
 psortb deb science optional arch=any
Checksums-Sha1:
 c47d0ec328df75f2151dd6d5b5840768006519f8 17036876 psortb_3.0.6+dfsg.orig.tar.xz
 3ff44e2646ae0b528bd81be76dee033d507bd6b2 6976 psortb_3.0.6+dfsg-3.debian.tar.xz
Checksums-Sha256:
 ed32aa0240bb03daed228b32614a53c146afba6ca66fd087702315d75e23f751 17036876 psortb_3.0.6+dfsg.orig.tar.xz
 f844813967c3b4bab7d979cf10a21c23428f28f6484859c0def1c7cc40fcc896 6976 psortb_3.0.6+dfsg-3.debian.tar.xz
Files:
 c4feab06d3031fecac1ab90258550209 17036876 psortb_3.0.6+dfsg.orig.tar.xz
 9594c13a92511a5179fa3159c56c810a 6976 psortb_3.0.6+dfsg-3.debian.tar.xz
Dgit: a9febf79c415bb81a3b745d1eb0c1b28da1388a4 debian archive/debian/3.0.6+dfsg-3 https://git.dgit.debian.org/psortb

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Fri Nov 22 07:29:00 UTC 2024  I: Checking whether the package is not for us
Fri Nov 22 07:29:00 UTC 2024  I: Starting 1st build on remote node ionos2-i386.debian.net.
Fri Nov 22 07:29:00 UTC 2024  I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Fri Nov 22 07:29:00 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down.
Fri Nov 22 07:29:00 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up.
removed '/tmp/read-only-fs-test-x2GpYT'
====================================================================================
Fri Nov 22 07:29:01 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos2-i386, called using "1 psortb bookworm /srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U 3.0.6+dfsg-3" as arguments.
Fri Nov 22 07:29:01 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-FdS15T55"

$ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING

Fri Nov 22 07:29:01 UTC 2024  I: Downloading source for bookworm/psortb=3.0.6+dfsg-3
Reading package lists...
NOTICE: 'psortb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/psortb.git
Please use:
git clone https://salsa.debian.org/med-team/psortb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 17.0 MB of source archives.
Get:1 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (dsc) [2217 B]
Get:2 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (tar) [17.0 MB]
Get:3 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (diff) [6976 B]
Fetched 17.0 MB in 0s (75.4 MB/s)
Download complete and in download only mode
Reading package lists...
NOTICE: 'psortb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/psortb.git
Please use:
git clone https://salsa.debian.org/med-team/psortb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 17.0 MB of source archives.
Get:1 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (dsc) [2217 B]
Get:2 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (tar) [17.0 MB]
Get:3 http://cdn-fastly.deb.debian.org/debian bookworm/main psortb 3.0.6+dfsg-3 (diff) [6976 B]
Fetched 17.0 MB in 0s (75.4 MB/s)
Download complete and in download only mode
=============================================================================
Building psortb in bookworm on i386 on ionos2-i386 now.
Date:     Fri Nov 22 08:29:02 CET 2024
Date UTC: Fri Nov 22 07:29:02 UTC 2024
=============================================================================
W: /root/.pbuilderrc does not exist
I: Logging to b1/build.log
I: pbuilder: network access will be disabled during build
I: Current time: Thu Nov 21 19:29:02 -12 2024
I: pbuilder-time-stamp: 1732260542
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [psortb_3.0.6+dfsg-3.dsc]
I: copying [./psortb_3.0.6+dfsg.orig.tar.xz]
I: copying [./psortb_3.0.6+dfsg-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Apr 24 08:35:50 2022 -12
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./psortb_3.0.6+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting psortb in psortb-3.0.6+dfsg
dpkg-source: info: unpacking psortb_3.0.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking psortb_3.0.6+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying biosquid_includes.patch
dpkg-source: info: applying fix_hmmer_interface.patch
dpkg-source: info: applying fix_build_Algorithm-SVM.patch
dpkg-source: info: applying remove-bundled-party-libsvm.patch
dpkg-source: info: applying path_to_conf.patch
dpkg-source: info: applying fix_module_path.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/31874/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='5e0a9736654840b286d1c8d62c88bda2'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='31874'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/pbuilderrc_mA3U --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/b1 --logfile b1/build.log psortb_3.0.6+dfsg-3.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Mar 29  2024 bash
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  5  2023 dash
  -rwxr-xr-x 1 root root  137160 Sep 20  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 20  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   87760 Oct 18 00:56 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root   84272 Oct 18 00:56 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 22  2023 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 24  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 19  2022 hostname
  -rwxr-xr-x 1 root root   75756 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 22  2023 login
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  214568 Oct 18 00:56 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Oct 18 00:56 more
  -rwsr-xr-x 1 root root   58912 Oct 18 00:56 mount
  -rwxr-xr-x 1 root root   13856 Oct 18 00:56 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Mar 29  2024 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Jul 28  2023 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  5  2023 sed
  lrwxrwxrwx 1 root root       4 Jan  5  2023 sh -> dash
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   83492 Oct 18 00:56 su
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  598456 Jan 19  2024 tar
  -rwxr-xr-x 1 root root   13860 Jul 28  2023 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 22  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Oct 18 00:56 umount
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   71216 Oct 18 00:56 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/31874/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19554 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libsvm-dev; however:
  Package libsvm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bioperl; however:
  Package bioperl is not installed.
 pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy; however:
  Package ncbi-blast+-legacy is not installed.
 pbuilder-satisfydepends-dummy depends on libsquid-dev; however:
  Package libsquid-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libhmmer2-dev; however:
  Package libhmmer2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsvmloc-dev; however:
  Package libsvmloc-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libmodhmm-dev; however:
  Package libmodhmm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on pkg-config; however:
  Package pkg-config is not installed.
 pbuilder-satisfydepends-dummy depends on pftools; however:
  Package pftools is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhmmer2-dev{a} libicu72{a} libio-string-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodhmm-dev{a} libmodhmm0{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsquid-dev{a} libsquid1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libsvm-dev{a} libsvm3{a} libsvmloc-dev{a} libsvmloc0{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bioperl-run ca-certificates curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 
0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 46.5 MB of archives. After unpacking 187 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: pftools which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhmmer2-dev{a} libicu72{a} libio-string-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodhmm-dev{a} libmodhmm0{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsquid-dev{a} libsquid1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libsvm-dev{a} libsvm3{a} libsvmloc-dev{a} libsvmloc0{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bioperl-run ca-certificates curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 
0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 46.5 MB of archives. After unpacking 187 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/31874 and its subdirectories
Starting cleanup.
All cleanup done.
Fri Nov 22 07:29:24 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-FdS15T55, removing.
/srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U:
total 16
drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:29 b1
drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:29 b2
-rw-r--r-- 1 jenkins jenkins 2217 Apr 24  2022 psortb_3.0.6+dfsg-3.dsc
-rw------- 1 jenkins jenkins 3343 Nov 22 07:29 rbuildlog.aEpmF1i

/srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/b1:
total 16
-rw-r--r-- 1 jenkins jenkins 16250 Nov 22 07:29 build.log

/srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/b2:
total 0
Fri Nov 22 07:29:25 UTC 2024  I: Deleting $TMPDIR on ionos2-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Nov 21 19:29:02 -12 2024
I: pbuilder-time-stamp: 1732260542
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [psortb_3.0.6+dfsg-3.dsc]
I: copying [./psortb_3.0.6+dfsg.orig.tar.xz]
I: copying [./psortb_3.0.6+dfsg-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Apr 24 08:35:50 2022 -12
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./psortb_3.0.6+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting psortb in psortb-3.0.6+dfsg
dpkg-source: info: unpacking psortb_3.0.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking psortb_3.0.6+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying biosquid_includes.patch
dpkg-source: info: applying fix_hmmer_interface.patch
dpkg-source: info: applying fix_build_Algorithm-SVM.patch
dpkg-source: info: applying remove-bundled-party-libsvm.patch
dpkg-source: info: applying path_to_conf.patch
dpkg-source: info: applying fix_module_path.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/31874/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='5e0a9736654840b286d1c8d62c88bda2'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='31874'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/pbuilderrc_mA3U --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zgokcG8U/b1 --logfile b1/build.log psortb_3.0.6+dfsg-3.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Mar 29  2024 bash
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  5  2023 dash
  -rwxr-xr-x 1 root root  137160 Sep 20  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 20  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   87760 Oct 18 00:56 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root   84272 Oct 18 00:56 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 22  2023 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 24  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 19  2022 hostname
  -rwxr-xr-x 1 root root   75756 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 22  2023 login
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  214568 Oct 18 00:56 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Oct 18 00:56 more
  -rwsr-xr-x 1 root root   58912 Oct 18 00:56 mount
  -rwxr-xr-x 1 root root   13856 Oct 18 00:56 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Mar 29  2024 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Jul 28  2023 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  5  2023 sed
  lrwxrwxrwx 1 root root       4 Jan  5  2023 sh -> dash
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   83492 Oct 18 00:56 su
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  598456 Jan 19  2024 tar
  -rwxr-xr-x 1 root root   13860 Jul 28  2023 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 22  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Oct 18 00:56 umount
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   71216 Oct 18 00:56 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/31874/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19554 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libsvm-dev; however:
  Package libsvm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bioperl; however:
  Package bioperl is not installed.
 pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy; however:
  Package ncbi-blast+-legacy is not installed.
 pbuilder-satisfydepends-dummy depends on libsquid-dev; however:
  Package libsquid-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libhmmer2-dev; however:
  Package libhmmer2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsvmloc-dev; however:
  Package libsvmloc-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libmodhmm-dev; however:
  Package libmodhmm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on pkg-config; however:
  Package pkg-config is not installed.
 pbuilder-satisfydepends-dummy depends on pftools; however:
  Package pftools is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhmmer2-dev{a} libicu72{a} libio-string-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodhmm-dev{a} libmodhmm0{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsquid-dev{a} libsquid1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libsvm-dev{a} libsvm3{a} libsvmloc-dev{a} libsvmloc0{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bioperl-run ca-certificates curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 
0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 46.5 MB of archives. After unpacking 187 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: pftools which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhmmer2-dev{a} libicu72{a} libio-string-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodhmm-dev{a} libmodhmm0{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsquid-dev{a} libsquid1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libsvm-dev{a} libsvm3{a} libsvmloc-dev{a} libsvmloc0{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bioperl-run ca-certificates curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 
0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 46.5 MB of archives. After unpacking 187 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/31874 and its subdirectories
psortb failed to build from source.
removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/psortb_3.0.6+dfsg-3.rbuild.log'
removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/psortb_3.0.6+dfsg-3.rbuild.log.gz'
removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/psortb_3.0.6+dfsg-3.build1.log.gz'
Fri Nov 22 07:29:25 UTC 2024  W: No second build log, what happened?
Compressing the 1st log...
b1/build.log:	 73.5% -- replaced with stdout
Fri Nov 22 07:29:25 UTC 2024  W: Downloading the build dependencies failed
Fri Nov 22 07:29:25 UTC 2024  W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Fri Nov 22 07:29:25 UTC 2024  W: Network problems are automatically rescheduled after some hours.
INSERT 0 1
INSERT 0 1
DELETE 1
[2024-11-22 07:29:26] INFO: Starting at 2024-11-22 07:29:26.541971
[2024-11-22 07:29:26] INFO: Generating the pages of 1 package(s)
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/psortb_3.0.6+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/psortb_3.0.6+dfsg-3.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/psortb_3.0.6+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/psortb_3.0.6+dfsg-3.diff.gz is missing
[2024-11-22 07:29:27] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/i386/psortb didn't produce a buildlog, even though it has been built.
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:27] INFO: Finished at 2024-11-22 07:29:27.881300, took: 0:00:01.339334

Fri Nov 22 07:29:27 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/i386/psortb.html

Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/psortb_3.0.6+dfsg-3.rbuild.log:	 69.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/psortb_3.0.6+dfsg-3.rbuild.log.gz
[2024-11-22 07:29:28] INFO: Starting at 2024-11-22 07:29:28.258110
[2024-11-22 07:29:28] INFO: Generating the pages of 1 package(s)
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/psortb_3.0.6+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/psortb_3.0.6+dfsg-4.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/psortb_3.0.6+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/psortb_3.0.6+dfsg-3.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/psortb_3.0.6+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/psortb_3.0.6+dfsg-3.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/psortb_3.0.6+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/psortb_3.0.6+dfsg-3.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:29] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/psortb_3.0.6+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/psortb_3.0.6+dfsg-2.diff.gz is missing
[2024-11-22 07:29:29] INFO: Finished at 2024-11-22 07:29:29.602474, took: 0:00:01.344370
All cleanup done.
Fri Nov 22 07:29:29 UTC 2024 - total duration: 0h 0m 40s.
Fri Nov 22 07:29:29 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-I6FKvSo6, removing.
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 44.620s
CPU time consumed: 6.576s