Running as unit: rb-build-i386_5-47121.service ==================================================================================== Wed Jan 22 01:40:22 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_5) on jenkins, called using "ionos12-i386 ionos6-i386" as arguments. Wed Jan 22 01:40:22 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hWDy5CXn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 01:40:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Wed Jan 22 01:40:22 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-gbVcoe' Wed Jan 22 01:40:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Wed Jan 22 01:40:22 UTC 2025 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-JuzmD8' ok, let's check if python-prodigy is building anywhere yet… ok, python-prodigy is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-prodigy in unstable on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos6-i386.debian.net. ============================================================================= Wed Jan 22 01:40:38 UTC 2025 I: starting to build python-prodigy/unstable/i386 on jenkins on '2025-01-22 01:40' Wed Jan 22 01:40:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/47121/console.log 1737510038 i386 unstable python-prodigy Wed Jan 22 01:40:38 UTC 2025 I: Downloading source for unstable/python-prodigy=2.2.5-1 --2025-01-22 01:40:38-- http://deb.debian.org/debian/pool/main/p/python-prodigy/python-prodigy_2.2.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2228 (2.2K) [text/prs.lines.tag] Saving to: ‘python-prodigy_2.2.5-1.dsc’ 0K .. 100% 349M=0s 2025-01-22 01:40:38 (349 MB/s) - ‘python-prodigy_2.2.5-1.dsc’ saved [2228/2228] --2025-01-22 01:40:38-- http://deb.debian.org/debian/pool/main/p/python-prodigy/python-prodigy_2.2.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2228 (2.2K) [text/prs.lines.tag] Saving to: ‘python-prodigy_2.2.5-1.dsc’ 0K .. 100% 349M=0s 2025-01-22 01:40:38 (349 MB/s) - ‘python-prodigy_2.2.5-1.dsc’ saved [2228/2228] Wed Jan 22 01:40:38 UTC 2025 I: python-prodigy_2.2.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-prodigy Binary: python3-prodigy Architecture: all Version: 2.2.5-1 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/haddocking/prodigy Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-prodigy Vcs-Git: https://salsa.debian.org/python-team/packages/python-prodigy.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python3-all, python3-biopython , python3-freesasa , python3-numpy , python3-poetry-core Package-List: python3-prodigy deb science optional arch=all Checksums-Sha1: 77d082c52d515fbb4d9fe8c3a0aed721545aa7e5 5709417 python-prodigy_2.2.5.orig.tar.gz 7663c4108ef5f358fd6c7642139fc1e97238ee1c 1972 python-prodigy_2.2.5-1.debian.tar.xz Checksums-Sha256: 029f6d50ab8c83f5b74b05b8509f5421e74fea1557a956993a4db8c279863762 5709417 python-prodigy_2.2.5.orig.tar.gz a27302ffaab247d2df441d7d73f835192a600bb7a09fa0467f9485918f854fa7 1972 python-prodigy_2.2.5-1.debian.tar.xz Files: 5ec2e314029ba64f73c220722f30800a 5709417 python-prodigy_2.2.5.orig.tar.gz 1aca24602656ea3ffbc815f812f93d9e 1972 python-prodigy_2.2.5-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmc/CFYSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHbFAP9iKvbJlbmOJ8Cc6N3oAnsjwsP9kBCJCT uP91AQUHDDck86Und3lZyngrMF43T99B8RFLmPAr2mA2d/2WcK0vPeRlIp8V2TUT 9gybjeRVko4CnH3nv3PwhfuBEVnAXWeEQTGDcaRm1nSJgT1aKMlKYFOgzzpfyVaG lFS8ajkUswKZpOolNyqIG60NAzgHswOW8L+NKNCY0yDu8e4a0VGaxPhSVZx0piM8 cj+x9vq6mLo0MncgC8d+aHclJrr+wcgScsHrQU8Dji06q+/6uBwpmPtGgh+c5UIJ 9ZRqWG8an54gxp6fJmhPSwYPBvXkivHUrUD7BqkU0nGB0t7SCTpiQPeOTxybW3FS ACbTBOw7Q7r93+2mlfwrX26P75AZy/0Q8tqLeeDiA53GKIpIK99R+VQsT7c2BY8O E5+UvJFIKZpBwZVWwLie329CDGe9jKTvYK2gUGtg3lEY2WNM6IFqlUf7/CXFrwGw vZTq6rk2bN6y6Kp9EzQof66ByJZLHFGk20UqbK2GQwGtoFNHirHkFdYz6roCUvX9 XPVnd54B71k7pTMlqOYjTmwlJj2yRG3hXzAhhavcaT1GmEqPEM0uOUA2NiwVNg5W l+1oKIsdVUybF2DwdqZLzeDxlObTR3PVRovZLG9BDyuVgcS+hFV/cH0kj5c7/WyY MxPqlu3tNTU= =yTq+ -----END PGP SIGNATURE----- Wed Jan 22 01:40:38 UTC 2025 I: Checking whether the package is not for us Wed Jan 22 01:40:38 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net. Wed Jan 22 01:40:38 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Wed Jan 22 01:40:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Wed Jan 22 01:40:38 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-XSQnss' ==================================================================================== Wed Jan 22 01:40:39 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 python-prodigy unstable /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o 2.2.5-1" as arguments. Wed Jan 22 01:40:39 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-P3tCpl93" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 01:40:39 UTC 2025 I: Downloading source for unstable/python-prodigy=2.2.5-1 Reading package lists... NOTICE: 'python-prodigy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-prodigy.git Please use: git clone https://salsa.debian.org/python-team/packages/python-prodigy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5714 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (dsc) [2228 B] Get:2 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (tar) [5709 kB] Get:3 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (diff) [1972 B] Fetched 5714 kB in 0s (26.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-prodigy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-prodigy.git Please use: git clone https://salsa.debian.org/python-team/packages/python-prodigy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5714 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (dsc) [2228 B] Get:2 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (tar) [5709 kB] Get:3 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (diff) [1972 B] Fetched 5714 kB in 0s (26.7 MB/s) Download complete and in download only mode ============================================================================= Building python-prodigy in unstable on i386 on ionos12-i386 now. Date: Wed Jan 22 02:40:40 CET 2025 Date UTC: Wed Jan 22 01:40:40 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 13:40:40 -12 2025 I: pbuilder-time-stamp: 1737510040 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-prodigy_2.2.5-1.dsc] I: copying [./python-prodigy_2.2.5.orig.tar.gz] I: copying [./python-prodigy_2.2.5-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-prodigy_2.2.5-1.dsc: unsupported subcommand dpkg-source: info: extracting python-prodigy in python-prodigy-2.2.5 dpkg-source: info: unpacking python-prodigy_2.2.5.orig.tar.gz dpkg-source: info: unpacking python-prodigy_2.2.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c12aa32786454f638f104a7886e2a221' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='53089' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_c3cn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1 --logfile b1/build.log python-prodigy_2.2.5-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python3-all, python3-biopython, python3-freesasa, python3-numpy, python3-poetry-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-freesasa; however: Package python3-freesasa is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-poetry-core; however: Package python3-poetry-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjson-c5{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-freesasa{a} python3-freetype{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-poetry-core{a} python3-pyproject-hooks{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 69.2 MB of archives. After unpacking 257 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.1-3 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.1-3 [2264 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-1 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.1-3 [1980 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.1-3 [740 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.8-5 [816 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.8-5 [2241 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 40 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.45-1 [288 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.2 [216 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-4 [143 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b3 [28.8 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-14 [735 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.4-2 [1573 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 95 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libjson-c5 i386 0.18+ds-1 [48.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-4 [2194 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.8-5 [1969 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.8-5 [677 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.1-2 [1052 B] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-pil i386 10.4.0-1.1 [512 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.26.1-2+b1 [131 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.2.5-1 [1117 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.84+dfsg-4+b2 [1648 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-freesasa i386 2.1.0-3+b4 [188 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-poetry-core all 2.0.1-2 [225 kB] Fetched 69.2 MB in 1s (65.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.1-3_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.1-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_i386.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:i386 (3.13.1-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_i386.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21195 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_i386.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.8-5_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.8-5) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.8-5_i386.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.4-1_i386.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../012-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. 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Setting up liblerc4:i386 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:i386 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:i386 (3.12.8-5) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:i386 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up libcom-err2:i386 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:i386 (2.1-6.1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-4) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 22 01:41:14 UTC 2025. Universal Time is now: Wed Jan 22 01:41:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.16-1) ... Setting up libimagequant0:i386 (2.18.0-1+b2) ... Setting up libunistring5:i386 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.45-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:i386 (1.21.3-4) ... Setting up libgfortran5:i386 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:i386 (1.5.0-0.1) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libopenjp2-7:i386 (2.5.0-2+b4) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:i386 (1.21.3-4) ... Setting up libwebpmux3:i386 (1.5.0-0.1) ... Setting up libjson-c5:i386 (0.18+ds-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up python3.12-minimal (3.12.8-5) ... Setting up liblapack3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:i386 (1.5.0-0.1) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:i386 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:i386 (10.2.0-1) ... Setting up libfontconfig1:i386 (2.15.0-2) ... Setting up libpython3.13-stdlib:i386 (3.13.1-3) ... Setting up libpython3-stdlib:i386 (3.13.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up libcairo2:i386 (1.18.2-2) ... Setting up python3-freesasa (2.1.0-3+b4) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-poetry-core (2.0.1-2) ... Setting up libraqm0:i386 (0.10.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up python3-build (1.2.2-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:i386 (3.12.8-5) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:i386 (10.4.0-1.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-prodigy-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-prodigy_2.2.5-1_source.changes dpkg-buildpackage: info: source package python-prodigy dpkg-buildpackage: info: source version 2.2.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' rm -rf prodigy.egg-info make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy/build; python3.12 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 76.639s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy/build; python3.13 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 67.358s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-prodigy/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' PYTHONPATH=src help2man debian/python3-prodigy/usr/bin/prodigy --no-info \ --name 'binding affinity predictor' \ --version-string 2.2.5 > prodigy.1 make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-prodigy' in '../python3-prodigy_2.2.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-prodigy_2.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../python-prodigy_2.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/53089 and its subdirectories I: Current time: Tue Jan 21 13:45:31 -12 2025 I: pbuilder-time-stamp: 1737510331 Wed Jan 22 01:45:31 UTC 2025 I: Signing ./b1/python-prodigy_2.2.5-1_i386.buildinfo as python-prodigy_2.2.5-1_i386.buildinfo.asc Wed Jan 22 01:45:31 UTC 2025 I: Signed ./b1/python-prodigy_2.2.5-1_i386.buildinfo as ./b1/python-prodigy_2.2.5-1_i386.buildinfo.asc Wed Jan 22 01:45:31 UTC 2025 - build #1 for python-prodigy/unstable/i386 on ionos12-i386 done. Starting cleanup. All cleanup done. Wed Jan 22 01:45:31 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-P3tCpl93, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 01:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 01:40 b2 -rw-r--r-- 1 jenkins jenkins 2228 Nov 21 10:27 python-prodigy_2.2.5-1.dsc -rw------- 1 jenkins jenkins 3374 Jan 22 01:40 rbuildlog.kR1I1VC /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1: total 5688 -rw-r--r-- 1 jenkins jenkins 59106 Jan 22 01:45 build.log -rw-r--r-- 1 jenkins jenkins 1972 Jan 22 01:45 python-prodigy_2.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2228 Jan 22 01:45 python-prodigy_2.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 7905 Jan 22 01:45 python-prodigy_2.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8787 Jan 22 01:45 python-prodigy_2.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1058 Jan 22 01:45 python-prodigy_2.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1507 Jan 22 01:45 python-prodigy_2.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 5709417 Jan 22 01:45 python-prodigy_2.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 15268 Jan 22 01:45 python3-prodigy_2.2.5-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2: total 0 Wed Jan 22 01:45:32 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 13:40:40 -12 2025 I: pbuilder-time-stamp: 1737510040 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-prodigy_2.2.5-1.dsc] I: copying [./python-prodigy_2.2.5.orig.tar.gz] I: copying [./python-prodigy_2.2.5-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-prodigy_2.2.5-1.dsc: unsupported subcommand dpkg-source: info: extracting python-prodigy in python-prodigy-2.2.5 dpkg-source: info: unpacking python-prodigy_2.2.5.orig.tar.gz dpkg-source: info: unpacking python-prodigy_2.2.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c12aa32786454f638f104a7886e2a221' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='53089' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_c3cn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1 --logfile b1/build.log python-prodigy_2.2.5-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python3-all, python3-biopython, python3-freesasa, python3-numpy, python3-poetry-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-freesasa; however: Package python3-freesasa is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-poetry-core; however: Package python3-poetry-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjson-c5{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-freesasa{a} python3-freetype{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-poetry-core{a} python3-pyproject-hooks{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 69.2 MB of archives. After unpacking 257 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.1-3 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.1-3 [2264 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-1 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.1-3 [1980 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.1-3 [740 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.8-5 [816 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.8-5 [2241 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 40 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.45-1 [288 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.2 [216 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-4 [143 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b3 [28.8 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-14 [735 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.4-2 [1573 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 95 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libjson-c5 i386 0.18+ds-1 [48.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-4 [2194 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.8-5 [1969 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.8-5 [677 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.1-2 [1052 B] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-pil i386 10.4.0-1.1 [512 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.26.1-2+b1 [131 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.2.5-1 [1117 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.84+dfsg-4+b2 [1648 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-freesasa i386 2.1.0-3+b4 [188 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-poetry-core all 2.0.1-2 [225 kB] Fetched 69.2 MB in 1s (65.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.1-3_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.1-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_i386.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:i386 (3.13.1-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20185 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_i386.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_i386.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21195 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_i386.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.8-5_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.8-5) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.8-5_i386.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.4-1_i386.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../012-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. 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Setting up liblerc4:i386 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:i386 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:i386 (3.12.8-5) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:i386 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up libcom-err2:i386 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:i386 (2.1-6.1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-4) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 22 01:41:14 UTC 2025. Universal Time is now: Wed Jan 22 01:41:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.16-1) ... Setting up libimagequant0:i386 (2.18.0-1+b2) ... Setting up libunistring5:i386 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.45-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:i386 (1.21.3-4) ... Setting up libgfortran5:i386 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:i386 (1.5.0-0.1) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libopenjp2-7:i386 (2.5.0-2+b4) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:i386 (1.21.3-4) ... Setting up libwebpmux3:i386 (1.5.0-0.1) ... Setting up libjson-c5:i386 (0.18+ds-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up python3.12-minimal (3.12.8-5) ... Setting up liblapack3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:i386 (1.5.0-0.1) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:i386 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:i386 (10.2.0-1) ... Setting up libfontconfig1:i386 (2.15.0-2) ... Setting up libpython3.13-stdlib:i386 (3.13.1-3) ... Setting up libpython3-stdlib:i386 (3.13.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up libcairo2:i386 (1.18.2-2) ... Setting up python3-freesasa (2.1.0-3+b4) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-poetry-core (2.0.1-2) ... Setting up libraqm0:i386 (0.10.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up python3-build (1.2.2-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:i386 (3.12.8-5) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:i386 (10.4.0-1.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-prodigy-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-prodigy_2.2.5-1_source.changes dpkg-buildpackage: info: source package python-prodigy dpkg-buildpackage: info: source version 2.2.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' rm -rf prodigy.egg-info make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy/build; python3.12 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 76.639s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy/build; python3.13 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 67.358s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-prodigy/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' PYTHONPATH=src help2man debian/python3-prodigy/usr/bin/prodigy --no-info \ --name 'binding affinity predictor' \ --version-string 2.2.5 > prodigy.1 make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-prodigy' in '../python3-prodigy_2.2.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-prodigy_2.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../python-prodigy_2.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/53089 and its subdirectories I: Current time: Tue Jan 21 13:45:31 -12 2025 I: pbuilder-time-stamp: 1737510331 Wed Jan 22 01:45:32 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Wed Jan 22 01:45:32 UTC 2025 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Wed Jan 22 01:45:32 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Wed Jan 22 01:45:32 UTC 2025 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-kPZVsg' ==================================================================================== Tue Feb 24 08:08:33 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos6-i386, called using "2 python-prodigy unstable /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o 2.2.5-1" as arguments. Tue Feb 24 08:08:33 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-p3wBCwcW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Feb 24 08:08:33 UTC 2026 I: Downloading source for unstable/python-prodigy=2.2.5-1 Reading package lists... NOTICE: 'python-prodigy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-prodigy.git Please use: git clone https://salsa.debian.org/python-team/packages/python-prodigy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5714 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (dsc) [2228 B] Get:2 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (tar) [5709 kB] Get:3 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (diff) [1972 B] Fetched 5714 kB in 0s (73.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-prodigy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-prodigy.git Please use: git clone https://salsa.debian.org/python-team/packages/python-prodigy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5714 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (dsc) [2228 B] Get:2 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (tar) [5709 kB] Get:3 http://deb.debian.org/debian unstable/main python-prodigy 2.2.5-1 (diff) [1972 B] Fetched 5714 kB in 0s (73.8 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-prodigy in unstable on i386 on ionos6-i386 now. Date: Tue Feb 24 09:08:34 CET 2026 Date UTC: Tue Feb 24 08:08:34 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_bJdW + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-prodigy = debian-installer -o python-prodigy = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-prodigy = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_bJdW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2 --logfile b2/build.log python-prodigy_2.2.5-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 22:08:34 +14 2026 I: pbuilder-time-stamp: 1771920514 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-prodigy_2.2.5-1.dsc] I: copying [./python-prodigy_2.2.5.orig.tar.gz] I: copying [./python-prodigy_2.2.5-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-prodigy_2.2.5-1.dsc: unsupported subcommand dpkg-source: info: extracting python-prodigy in python-prodigy-2.2.5 dpkg-source: info: unpacking python-prodigy_2.2.5.orig.tar.gz dpkg-source: info: unpacking python-prodigy_2.2.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 24 08:08 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=6d621354f25e4863adabbcbdee0cd90d LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=28393 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_bJdW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2 --logfile b2/build.log python-prodigy_2.2.5-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, pybuild-plugin-pyproject, python3-all, python3-biopython, python3-freesasa, python3-numpy, python3-poetry-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-freesasa; however: Package python3-freesasa is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-poetry-core; however: Package python3-poetry-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjson-c5{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-freesasa{a} python3-freetype{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-poetry-core{a} python3-pyproject-hooks{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 69.2 MB of archives. After unpacking 257 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.1-3 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.1-3 [2264 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-1 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.1-3 [1980 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.1-3 [740 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.8-5 [816 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.8-5 [2241 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 40 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.45-1 [288 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.2 [216 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 71 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-4 [143 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b3 [28.8 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-14 [735 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.4-2 [1573 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 95 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libjson-c5 i386 0.18+ds-1 [48.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-4 [2194 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.8-5 [1969 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.8-5 [677 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.1-2 [1052 B] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-pil i386 10.4.0-1.1 [512 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.26.1-2+b1 [131 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.2.5-1 [1117 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.84+dfsg-4+b2 [1648 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-freesasa i386 2.1.0-3+b4 [188 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-poetry-core all 2.0.1-2 [225 kB] Fetched 69.2 MB in 1s (129 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.1-3_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.1-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_i386.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:i386 (3.13.1-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20185 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_i386.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.1-3_i386.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 24 08:08:56 UTC 2026. Universal Time is now: Tue Feb 24 08:08:56 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.16-1) ... Setting up libimagequant0:i386 (2.18.0-1+b2) ... Setting up libunistring5:i386 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.45-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:i386 (1.21.3-4) ... 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Setting up liblapack3:i386 (3.12.0-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:i386 (1.5.0-0.1) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:i386 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:i386 (10.2.0-1) ... Setting up libfontconfig1:i386 (2.15.0-2) ... Setting up libpython3.13-stdlib:i386 (3.13.1-3) ... Setting up libpython3-stdlib:i386 (3.13.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up libcairo2:i386 (1.18.2-2) ... Setting up python3-freesasa (2.1.0-3+b4) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-poetry-core (2.0.1-2) ... Setting up libraqm0:i386 (0.10.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up python3-build (1.2.2-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:i386 (3.12.8-5) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:i386 (10.4.0-1.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/28393/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/28393/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-prodigy-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-prodigy_2.2.5-1_source.changes dpkg-buildpackage: info: source package python-prodigy dpkg-buildpackage: info: source version 2.2.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' rm -rf prodigy.egg-info make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy * Building wheel... Successfully built prodigy_prot-2.2.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.12_prodigy/build; python3.12 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 30.326s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% I: pybuild base:311: cd /build/reproducible-path/python-prodigy-2.2.5/.pybuild/cpython3_3.13_prodigy/build; python3.13 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 27.622s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-prodigy/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/python-prodigy-2.2.5' PYTHONPATH=src help2man debian/python3-prodigy/usr/bin/prodigy --no-info \ --name 'binding affinity predictor' \ --version-string 2.2.5 > prodigy.1 make[1]: Leaving directory '/build/reproducible-path/python-prodigy-2.2.5' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-prodigy' in '../python3-prodigy_2.2.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-prodigy_2.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../python-prodigy_2.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/28393/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/28393/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28393 and its subdirectories I: Current time: Tue Feb 24 22:10:56 +14 2026 I: pbuilder-time-stamp: 1771920656 + false + set +x Tue Feb 24 08:10:56 UTC 2026 I: Signing ./b2/python-prodigy_2.2.5-1_i386.buildinfo as python-prodigy_2.2.5-1_i386.buildinfo.asc Tue Feb 24 08:10:56 UTC 2026 I: Signed ./b2/python-prodigy_2.2.5-1_i386.buildinfo as ./b2/python-prodigy_2.2.5-1_i386.buildinfo.asc Tue Feb 24 08:10:56 UTC 2026 - build #2 for python-prodigy/unstable/i386 on ionos6-i386 done. Starting cleanup. All cleanup done. Tue Feb 24 08:10:56 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-p3wBCwcW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o: total 80 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 01:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 01:47 b2 -rw-r--r-- 1 jenkins jenkins 2228 Nov 21 10:27 python-prodigy_2.2.5-1.dsc -rw------- 1 jenkins jenkins 62764 Jan 22 01:45 rbuildlog.kR1I1VC /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1: total 5704 -rw-r--r-- 1 jenkins jenkins 59106 Jan 22 01:45 build.log -rw-r--r-- 1 jenkins jenkins 1972 Jan 22 01:45 python-prodigy_2.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2228 Jan 22 01:45 python-prodigy_2.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 7905 Jan 22 01:45 python-prodigy_2.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8787 Jan 22 01:45 python-prodigy_2.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1058 Jan 22 01:45 python-prodigy_2.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1507 Jan 22 01:45 python-prodigy_2.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 5709417 Jan 22 01:45 python-prodigy_2.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 15268 Jan 22 01:45 python3-prodigy_2.2.5-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2: total 5688 -rw-r--r-- 1 jenkins jenkins 61016 Jan 22 01:47 build.log -rw-r--r-- 1 jenkins jenkins 1972 Jan 22 01:47 python-prodigy_2.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2228 Jan 22 01:47 python-prodigy_2.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 7905 Jan 22 01:47 python-prodigy_2.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8787 Jan 22 01:47 python-prodigy_2.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1058 Jan 22 01:47 python-prodigy_2.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1507 Jan 22 01:47 python-prodigy_2.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 5709417 Jan 22 01:47 python-prodigy_2.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 15268 Jan 22 01:47 python3-prodigy_2.2.5-1_all.deb Wed Jan 22 01:47:57 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. Wed Jan 22 01:47:57 UTC 2025 I: python-prodigy_2.2.5-1_i386.changes: Format: 1.8 Date: Thu, 21 Nov 2024 04:50:19 -0500 Source: python-prodigy Binary: python3-prodigy Architecture: all Version: 2.2.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Andrius Merkys Description: python3-prodigy - Protein Binding Affinity Prediction (Python 3) Changes: python-prodigy (2.2.5-1) unstable; urgency=medium . * New upstream version 2.2.5 Checksums-Sha1: b3f666887eb4cb91fed7f3c2c7a70713d2fd47e9 7905 python-prodigy_2.2.5-1_i386.buildinfo 4a8b99264df140c88b1829a67257d4688a310c4a 15268 python3-prodigy_2.2.5-1_all.deb Checksums-Sha256: 362428ebc1a3be128afd37d0ead58120ee8a8165415b756345fc9da1c2daf0d7 7905 python-prodigy_2.2.5-1_i386.buildinfo 470455f92ef4cfc158329076cde18f761124d0ed65ed8e7fd222530f2c533879 15268 python3-prodigy_2.2.5-1_all.deb Files: ad001421448d94d72eef6973bdaf118e 7905 science optional python-prodigy_2.2.5-1_i386.buildinfo 0fe83b6ff95ed0e86ba90f63dbbb7c4b 15268 science optional python3-prodigy_2.2.5-1_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-prodigy_2.2.5-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-prodigy_2.2.5-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-prodigy_2.2.5-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-prodigy_2.2.5-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/i386/python-prodigy_2.2.5-1_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/python-prodigy_2.2.5-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-22 01:45:32.243141655 +0000 +++ b2/build.log 2025-01-22 01:47:56.936628575 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 21 13:40:40 -12 2025 -I: pbuilder-time-stamp: 1737510040 +I: Current time: Tue Feb 24 22:08:34 +14 2026 +I: pbuilder-time-stamp: 1771920514 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -23,54 +23,86 @@ dpkg-source: info: unpacking python-prodigy_2.2.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 24 08:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='c12aa32786454f638f104a7886e2a221' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='53089' - PS1='# ' - PS2='> ' + INVOCATION_ID=6d621354f25e4863adabbcbdee0cd90d + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28393 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_c3cn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1 --logfile b1/build.log python-prodigy_2.2.5-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/pbuilderrc_bJdW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2 --logfile b2/build.log python-prodigy_2.2.5-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/53089/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -258,7 +290,7 @@ Get: 134 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.84+dfsg-4+b2 [1648 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-freesasa i386 2.1.0-3+b4 [188 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-poetry-core all 2.0.1-2 [225 kB] -Fetched 69.2 MB in 1s (65.7 MB/s) +Fetched 69.2 MB in 1s (129 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) @@ -717,8 +749,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jan 22 01:41:14 UTC 2025. -Universal Time is now: Wed Jan 22 01:41:14 UTC 2025. +Local time is now: Tue Feb 24 08:08:56 UTC 2026. +Universal Time is now: Tue Feb 24 08:08:56 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1+b2) ... @@ -837,7 +869,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-prodigy-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-prodigy_2.2.5-1_source.changes +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-prodigy-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-prodigy_2.2.5-1_source.changes dpkg-buildpackage: info: source package python-prodigy dpkg-buildpackage: info: source version 2.2.5-1 dpkg-buildpackage: info: source distribution unstable @@ -875,7 +911,7 @@ Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- -Ran 1 test in 76.639s +Ran 1 test in 30.326s OK Deltas: @@ -890,7 +926,7 @@ Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- -Ran 1 test in 67.358s +Ran 1 test in 27.622s OK Deltas: @@ -935,12 +971,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28393/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/53089 and its subdirectories -I: Current time: Tue Jan 21 13:45:31 -12 2025 -I: pbuilder-time-stamp: 1737510331 +I: removing directory /srv/workspace/pbuilder/28393 and its subdirectories +I: Current time: Tue Feb 24 22:10:56 +14 2026 +I: pbuilder-time-stamp: 1771920656 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/python-prodigy_2.2.5-1.diff: 66.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/python-prodigy_2.2.5-1.diff.gz b2/build.log: 81.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.5% -- replaced with stdout Wed Jan 22 01:47:58 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-prodigy_unstable_i386_1737510478 + touch /var/log/reproducible-builds/diffoscope_stamp_python-prodigy_unstable_i386_1737510478 + RESULT=0 + systemd-run '--description=diffoscope on python-prodigy/2.2.5-1 in unstable/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_5-47121 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o --run-session -c jenkins-reproducible-unstable-diffoscope-67505262-ad32-4122-bc89-840c90699009 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/dbd-tmp-DeQ6do7 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1/python-prodigy_2.2.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2/python-prodigy_2.2.5-1_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_5-47121.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/python-prodigy_2.2.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b1/python-prodigy_2.2.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZriTf21o/b2/python-prodigy_2.2.5-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.325s) 0.325s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 612ms CPU time consumed: 611ms _ _ _ _ _ __ _ _| |_| |__ ___ _ __ _ __ _ __ ___ __| (_) __ _ _ _ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| '__/ _ \ / _` | |/ _` | | | | | |_) | |_| | |_| | | | (_) | | | |_____| |_) | | | (_) | (_| | | (_| | |_| | | .__/ \__, |\__|_| |_|\___/|_| |_| | .__/|_| \___/ \__,_|_|\__, |\__, | |_| |___/ |_| |___/ |___/ Wed Jan 22 01:47:59 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Wed Jan 22 01:47:59 UTC 2025 I: python-prodigy from unstable built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-22 01:48:00] INFO: Starting at 2025-01-22 01:48:00.153933 [2025-01-22 01:48:00] INFO: Generating the pages of 1 package(s) [2025-01-22 01:48:00] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/python-prodigy didn't produce a buildlog, even though it has been built. [2025-01-22 01:48:00] INFO: Finished at 2025-01-22 01:48:00.424300, took: 0:00:00.270375 Wed Jan 22 01:48:00 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/python-prodigy.html Wed Jan 22 01:48:00 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Jan 22 01:48:00 UTC 2025 I: Submitting 12K b1/python-prodigy_2.2.5-1_i386.buildinfo.asc https://buildinfo.debian.net/b3f666887eb4cb91fed7f3c2c7a70713d2fd47e9/python-prodigy_2.2.5-1_all Wed Jan 22 01:48:01 UTC 2025 I: Submitting 12K b2/python-prodigy_2.2.5-1_i386.buildinfo.asc https://buildinfo.debian.net/214f5ab56906070c9878324dc70fc5fd50c9dd1f/python-prodigy_2.2.5-1_all Wed Jan 22 01:48:02 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 22 01:48:02 UTC 2025 I: Done submitting .buildinfo files. Wed Jan 22 01:48:02 UTC 2025 I: Removing signed python-prodigy_2.2.5-1_i386.buildinfo.asc files: removed './b1/python-prodigy_2.2.5-1_i386.buildinfo.asc' removed './b2/python-prodigy_2.2.5-1_i386.buildinfo.asc' 1737510482 i386 unstable python-prodigy Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-prodigy_2.2.5-1.rbuild.log: 79.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/python-prodigy_2.2.5-1.rbuild.log.gz [2025-01-22 01:48:02] INFO: Starting at 2025-01-22 01:48:02.916826 [2025-01-22 01:48:02] INFO: Generating the pages of 1 package(s) [2025-01-22 01:48:03] INFO: Finished at 2025-01-22 01:48:03.178864, took: 0:00:00.262044 All cleanup done. Wed Jan 22 01:48:03 UTC 2025 - total duration: 0h 7m 37s. Wed Jan 22 01:48:03 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hWDy5CXn, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 41.125s CPU time consumed: 7.010s