Running as unit: rb-build-i386_7-48204.service ==================================================================================== Sun Nov 24 17:12:44 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_7) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Sun Nov 24 17:12:44 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-nYsUI0Di" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 17:12:44 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Sun Nov 24 17:12:44 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-3gjQEj' Sun Nov 24 17:12:44 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Sun Nov 24 17:12:44 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-KmWZuR' ok, let's check if fermi-lite is building anywhere yet… ok, fermi-lite is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of fermi-lite in unstable on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Sun Nov 24 17:13:02 UTC 2024 I: starting to build fermi-lite/unstable/i386 on jenkins on '2024-11-24 17:12' Sun Nov 24 17:13:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/48204/console.log 1732468382 i386 unstable fermi-lite Sun Nov 24 17:13:02 UTC 2024 I: Downloading source for unstable/fermi-lite=0.1+git20190320.b499514-1 --2024-11-24 17:13:02-- http://deb.debian.org/debian/pool/main/f/fermi-lite/fermi-lite_0.1%2bgit20190320.b499514-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2324 (2.3K) [text/prs.lines.tag] Saving to: ‘fermi-lite_0.1+git20190320.b499514-1.dsc’ 0K .. 100% 308M=0s 2024-11-24 17:13:02 (308 MB/s) - ‘fermi-lite_0.1+git20190320.b499514-1.dsc’ saved [2324/2324] --2024-11-24 17:13:02-- http://deb.debian.org/debian/pool/main/f/fermi-lite/fermi-lite_0.1%2bgit20190320.b499514-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2324 (2.3K) [text/prs.lines.tag] Saving to: ‘fermi-lite_0.1+git20190320.b499514-1.dsc’ 0K .. 100% 308M=0s 2024-11-24 17:13:02 (308 MB/s) - ‘fermi-lite_0.1+git20190320.b499514-1.dsc’ saved [2324/2324] Sun Nov 24 17:13:02 UTC 2024 I: fermi-lite_0.1+git20190320.b499514-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fermi-lite Binary: fml-asm, libfml0, libfml-dev Architecture: any Version: 0.1+git20190320.b499514-1 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Nilesh Patra Homepage: https://github.com/lh3/fermi-lite Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/fermi-lite Vcs-Git: https://salsa.debian.org/med-team/fermi-lite.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man Package-List: fml-asm deb science optional arch=any libfml-dev deb libdevel optional arch=any libfml0 deb libs optional arch=any Checksums-Sha1: 48d2cc90b154b628b2e7908faf92e7417e19ac7b 238332 fermi-lite_0.1+git20190320.b499514.orig.tar.xz 61ca7cdb140a55eae00d0834854d416822983e73 11344 fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz Checksums-Sha256: e0f95af30a028890931472cf94108d3dbc84f435ca7c82c710eeb8f0d0a71aa6 238332 fermi-lite_0.1+git20190320.b499514.orig.tar.xz c30779385aeae86b5c7dcd23c148d38236366d369e0d7d6b3b36d94b2ec48e43 11344 fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz Files: 1e870860ab88c6ee624878e7bc7044c6 238332 fermi-lite_0.1+git20190320.b499514.orig.tar.xz 65f796cf5c690cb69550b8dc53a72ed1 11344 fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/4MWIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEWrRAAjKQ3D+pvCusKhIk1jenk8auwgJHd6ZQ8 lL7uCHOuqhz76bBJcIy40XTHiGUzZ09BOhsKIADO2CiyBotiC1ShqgAqbK64sm3F E+Ait1eWrJCdxaOmCqayqPmJh9Up+zIvhGqvsAOCEXMH7VIXxh5ZrzHgAHcd928I 9YDekhLnH6bcheUTCXvq6k2sH21CxhONkMN5G7hvjpdZQnhjatYgaPb1op6/efZs piixhCps9owEXm/4p78Akm+ik/o6xw3rBpLQdDdRd9+RYmMf8Lq7vB2gAaW5c4oR 5f8mPr4Wd+acdx2ySfIz4dHHnTifOOtyDqsaOghZReW0aURnRVT8ecxaeJ9/EfjF myKMlsRymUMKfmxqX+x+FTL6CwylYPZcWcb2vV00taxHhbeNX6DdSkvv7/6Zieqi o39IHvFP9/xAe/tqUjrmql3PlK36On28fWDCf9cPBMdnKWd/59IIzRXASteFP/2+ o5hFxf+X2w9Kx4qw3Esym9hf1SlFHAQNQonuEEiIR/9OSCsPBfnNziQkkB2+CRdG BssptYrDZQCUjKz1KF8dgIo7Hy66qTc44w2aOMBx6X4N2FcaryTrjK3QTXyRjAAf RbUub9KePQ18nnU3gedz+FPv2E6CsvlS4eapg+tXmRV/EV7e7HQcA6W00B/T1fUC 392zKo7VAmA= =PPO+ -----END PGP SIGNATURE----- Sun Nov 24 17:13:03 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 17:13:03 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Sun Nov 24 17:13:03 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Sun Nov 24 17:13:03 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Sun Nov 24 17:13:03 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-wQbhTs' ==================================================================================== Sun Nov 24 17:13:03 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 fermi-lite unstable /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH 0.1+git20190320.b499514-1" as arguments. Sun Nov 24 17:13:03 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-d6aul6MX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 17:13:04 UTC 2024 I: Downloading source for unstable/fermi-lite=0.1+git20190320.b499514-1 Reading package lists... NOTICE: 'fermi-lite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fermi-lite.git Please use: git clone https://salsa.debian.org/med-team/fermi-lite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (dsc) [2324 B] Get:2 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (tar) [238 kB] Get:3 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (diff) [11.3 kB] Fetched 252 kB in 0s (3967 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fermi-lite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fermi-lite.git Please use: git clone https://salsa.debian.org/med-team/fermi-lite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (dsc) [2324 B] Get:2 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (tar) [238 kB] Get:3 http://deb.debian.org/debian unstable/main fermi-lite 0.1+git20190320.b499514-1 (diff) [11.3 kB] Fetched 252 kB in 0s (3967 kB/s) Download complete and in download only mode ============================================================================= Building fermi-lite in unstable on i386 on ionos12-i386 now. Date: Sun Nov 24 18:13:04 CET 2024 Date UTC: Sun Nov 24 17:13:04 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 05:13:04 -12 2024 I: pbuilder-time-stamp: 1732468384 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fermi-lite_0.1+git20190320.b499514-1.dsc] I: copying [./fermi-lite_0.1+git20190320.b499514.orig.tar.xz] I: copying [./fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 8 10:18:10 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fermi-lite_0.1+git20190320.b499514-1.dsc: no acceptable signature found dpkg-source: info: extracting fermi-lite in fermi-lite-0.1+git20190320.b499514 dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514.orig.tar.xz dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying rename_bseq1_t.patch dpkg-source: info: applying bcf_seqlib.patch dpkg-source: info: applying simde dpkg-source: info: applying ensure-signed-comparison.patch dpkg-source: info: applying sync_instead_of_atomic dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/46569/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='44b68bc2c2094419ac277b0d0ceb4b7c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='46569' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/pbuilderrc_qRrj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/b1 --logfile b1/build.log fermi-lite_0.1+git20190320.b499514-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/46569/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 86.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 d-shlibs all 0.107 [11.0 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 21.7 MB in 0s (57.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.107_all.deb ... Unpacking d-shlibs (0.107) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20190320.b499514-1_source.changes dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1+git20190320.b499514-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_auto_clean make -j11 clean make[2]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -f fml-asm.1 make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j11 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kthread.o kthread.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc.o misc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bseq.o bseq.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htab.o htab.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bfc.o bfc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rle.o rle.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rope.o rope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrope.o mrope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rld0.o rld0.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o unitig.o unitig.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mag.o mag.c bfc.c: In function 'bfc_kmer_insert': bfc.c:54:24: warning: variable 'hash' set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ misc.c: In function 'fml_utg_print': misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] 217 | int i, j, l; | ^ rld0.c: In function 'rld_restore': rld0.c:298:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:299:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 299 | fread(e->z[i], 8, k, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:301:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 301 | fread(e->frame, 8 * e->asize1, e->n_frames, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c: In function 'rld_restore_header': rld0.c:256:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ rld0.c:258:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fread(&x, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rld0.c:260:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 260 | fread(a, 8, 3, fp); | ^~~~~~~~~~~~~~~~~~ rld0.c:262:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unitig.c: In function 'unitig1': unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 325 | int seed_len, ret, is_loop, contained; | ^~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bubble.o bubble.c mag.c: In function 'mag_g_rm_vext': mag.c:418:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 418 | fprintf(stderr, "[M::%s] removed %ld tips (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d mag.c: In function 'mag_g_rm_vint': mag.c:436:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 436 | fprintf(stderr, "[M::%s] removed %ld internal vertices (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksw.o ksw.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o example.o example.c ksw.c: In function 'ksw_u8': ksw.c:127:14: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 127 | zero = _mm_set1_epi32(0); | ^ ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread ar: `u' modifier ignored since `D' is the default (see `U') cc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ./fml-asm test/MT-simu.fq.gz > MT.fq test "$(wc -l < MT.fq)" = "4" make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ln -s libfml.so.* libfml.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "fml.h" /usr/include/ \ --movedev "bfc.h" /usr/include/fml \ --movedev "htab.h" /usr/include/fml \ --movedev "kmer.h" /usr/include/fml \ --movedev "internal.h" /usr/include/fml \ --movedev "khash.h" /usr/include/fml \ --movedev "kvec.h" /usr/include/fml \ --movedev "ksort.h" /usr/include/fml \ libfml.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libfml-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libfml0/usr/lib/i386-linux-gnu mv ./libfml.a debian/libfml-dev/usr/lib/i386-linux-gnu mv ./libfml.la debian/libfml-dev/usr/lib/i386-linux-gnu || true mv ./libfml.so debian/libfml-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/libfml.so.0 debian/libfml0/usr/lib/i386-linux-gnu PKGDEV=libfml-dev PKGSHL=libfml0 install -d -m 755 debian/libfml-dev//usr/include/ mv fml.h debian/libfml-dev//usr/include/ install -d -m 755 debian/libfml-dev//usr/include/fml mv bfc.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv htab.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kmer.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv internal.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv khash.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kvec.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv ksort.h debian/libfml-dev//usr/include/fml mv: cannot stat './libfml.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' help2man --version-string='0.1' \ -n 'assemble Illumina short reads in small regions' \ -N --no-discard-stderr -h '' ./fml-asm > fml-asm.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfml0/DEBIAN/symbols doesn't match completely debian/libfml0.symbols --- debian/libfml0.symbols (libfml0_0.1+git20190320.b499514-1_i386) +++ dpkg-gensymbolsX3PTCS 2024-11-24 17:13:52.775000845 +0000 @@ -18,6 +18,7 @@ fm6_get_nei@Base 0.1 fm6_is_contained@Base 0.1 fm6_retrieve@Base 0.1 + fm_verbose@Base 0.1+git20190320.b499514-1 fml_assemble@Base 0.1 fml_correct@Base 0.1 fml_correct_core@Base 0.1 @@ -36,6 +37,7 @@ fml_seq_read@Base 0.1 fml_utg_destroy@Base 0.1 fml_utg_print@Base 0.1 + fml_utg_print_gfa@Base 0.1+git20190320.b499514-1 g_defr@Base 0.1 g_trinull@Base 0.1 kh_clear_64@Base 0.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20190320.b499514-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo dpkg-genchanges --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/46569 and its subdirectories I: Current time: Sun Nov 24 05:13:56 -12 2024 I: pbuilder-time-stamp: 1732468436 Sun Nov 24 17:13:56 UTC 2024 I: Signing ./b1/fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo as fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo.asc Sun Nov 24 17:13:57 UTC 2024 I: Signed ./b1/fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo as ./b1/fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo.asc Sun Nov 24 17:13:57 UTC 2024 - build #1 for fermi-lite/unstable/i386 on ionos12-i386 done. Starting cleanup. All cleanup done. Sun Nov 24 17:13:57 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-d6aul6MX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:13 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:13 b2 -rw-r--r-- 1 jenkins jenkins 2324 Jan 8 2021 fermi-lite_0.1+git20190320.b499514-1.dsc -rw------- 1 jenkins jenkins 3534 Nov 24 17:13 rbuildlog.C1vpemb /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/b1: total 940 -rw-r--r-- 1 jenkins jenkins 33370 Nov 24 17:13 build.log -rw-r--r-- 1 jenkins jenkins 11344 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2324 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1.dsc -rw-r--r-- 1 jenkins jenkins 6708 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 7590 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2935 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1_i386.changes -rw-r--r-- 1 jenkins jenkins 2031 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514-1_source.changes -rw-r--r-- 1 jenkins jenkins 238332 Nov 24 17:13 fermi-lite_0.1+git20190320.b499514.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 169056 Nov 24 17:13 fml-asm-dbgsym_0.1+git20190320.b499514-1_i386.deb -rw-r--r-- 1 jenkins jenkins 85992 Nov 24 17:13 fml-asm_0.1+git20190320.b499514-1_i386.deb -rw-r--r-- 1 jenkins jenkins 101216 Nov 24 17:13 libfml-dev_0.1+git20190320.b499514-1_i386.deb -rw-r--r-- 1 jenkins jenkins 166648 Nov 24 17:13 libfml0-dbgsym_0.1+git20190320.b499514-1_i386.deb -rw-r--r-- 1 jenkins jenkins 88964 Nov 24 17:13 libfml0_0.1+git20190320.b499514-1_i386.deb /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/b2: total 0 Sun Nov 24 17:13:57 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 05:13:04 -12 2024 I: pbuilder-time-stamp: 1732468384 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fermi-lite_0.1+git20190320.b499514-1.dsc] I: copying [./fermi-lite_0.1+git20190320.b499514.orig.tar.xz] I: copying [./fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 8 10:18:10 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fermi-lite_0.1+git20190320.b499514-1.dsc: no acceptable signature found dpkg-source: info: extracting fermi-lite in fermi-lite-0.1+git20190320.b499514 dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514.orig.tar.xz dpkg-source: info: unpacking fermi-lite_0.1+git20190320.b499514-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying rename_bseq1_t.patch dpkg-source: info: applying bcf_seqlib.patch dpkg-source: info: applying simde dpkg-source: info: applying ensure-signed-comparison.patch dpkg-source: info: applying sync_instead_of_atomic dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/46569/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='44b68bc2c2094419ac277b0d0ceb4b7c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='46569' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/pbuilderrc_qRrj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/b1 --logfile b1/build.log fermi-lite_0.1+git20190320.b499514-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/46569/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libsimde-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsimde-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 86.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 d-shlibs all 0.107 [11.0 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 21.7 MB in 0s (57.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.107_all.deb ... Unpacking d-shlibs (0.107) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../23-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../25-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../32-libsimde-dev_0.8.2-1_all.deb ... Unpacking libsimde-dev (0.8.2-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-1) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.107) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20190320.b499514-1_source.changes dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1+git20190320.b499514-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_auto_clean make -j11 clean make[2]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' rm -f fml-asm.1 make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j11 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kthread.o kthread.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc.o misc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bseq.o bseq.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htab.o htab.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bfc.o bfc.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rle.o rle.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rope.o rope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrope.o mrope.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rld0.o rld0.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o unitig.o unitig.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mag.o mag.c bfc.c: In function 'bfc_kmer_insert': bfc.c:54:24: warning: variable 'hash' set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ misc.c: In function 'fml_utg_print': misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] 217 | int i, j, l; | ^ rld0.c: In function 'rld_restore': rld0.c:298:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:299:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 299 | fread(e->z[i], 8, k, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:301:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 301 | fread(e->frame, 8 * e->asize1, e->n_frames, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c: In function 'rld_restore_header': rld0.c:256:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ rld0.c:258:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fread(&x, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rld0.c:260:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 260 | fread(a, 8, 3, fp); | ^~~~~~~~~~~~~~~~~~ rld0.c:262:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unitig.c: In function 'unitig1': unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 325 | int seed_len, ret, is_loop, contained; | ^~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bubble.o bubble.c mag.c: In function 'mag_g_rm_vext': mag.c:418:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 418 | fprintf(stderr, "[M::%s] removed %ld tips (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d mag.c: In function 'mag_g_rm_vint': mag.c:436:52: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 436 | fprintf(stderr, "[M::%s] removed %ld internal vertices (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksw.o ksw.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o example.o example.c ksw.c: In function 'ksw_u8': ksw.c:127:14: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 127 | zero = _mm_set1_epi32(0); | ^ ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread ar: `u' modifier ignored since `D' is the default (see `U') cc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20190320.b499514=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ./fml-asm test/MT-simu.fq.gz > MT.fq test "$(wc -l < MT.fq)" = "4" make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' ln -s libfml.so.* libfml.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "fml.h" /usr/include/ \ --movedev "bfc.h" /usr/include/fml \ --movedev "htab.h" /usr/include/fml \ --movedev "kmer.h" /usr/include/fml \ --movedev "internal.h" /usr/include/fml \ --movedev "khash.h" /usr/include/fml \ --movedev "kvec.h" /usr/include/fml \ --movedev "ksort.h" /usr/include/fml \ libfml.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libfml-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libfml0/usr/lib/i386-linux-gnu mv ./libfml.a debian/libfml-dev/usr/lib/i386-linux-gnu mv ./libfml.la debian/libfml-dev/usr/lib/i386-linux-gnu || true mv ./libfml.so debian/libfml-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/fermi-lite-0.1+git20190320.b499514/libfml.so.0 debian/libfml0/usr/lib/i386-linux-gnu PKGDEV=libfml-dev PKGSHL=libfml0 install -d -m 755 debian/libfml-dev//usr/include/ mv fml.h debian/libfml-dev//usr/include/ install -d -m 755 debian/libfml-dev//usr/include/fml mv bfc.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv htab.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kmer.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv internal.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv khash.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kvec.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv ksort.h debian/libfml-dev//usr/include/fml mv: cannot stat './libfml.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' help2man --version-string='0.1' \ -n 'assemble Illumina short reads in small regions' \ -N --no-discard-stderr -h '' ./fml-asm > fml-asm.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20190320.b499514' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfml0/DEBIAN/symbols doesn't match completely debian/libfml0.symbols --- debian/libfml0.symbols (libfml0_0.1+git20190320.b499514-1_i386) +++ dpkg-gensymbolsX3PTCS 2024-11-24 17:13:52.775000845 +0000 @@ -18,6 +18,7 @@ fm6_get_nei@Base 0.1 fm6_is_contained@Base 0.1 fm6_retrieve@Base 0.1 + fm_verbose@Base 0.1+git20190320.b499514-1 fml_assemble@Base 0.1 fml_correct@Base 0.1 fml_correct_core@Base 0.1 @@ -36,6 +37,7 @@ fml_seq_read@Base 0.1 fml_utg_destroy@Base 0.1 fml_utg_print@Base 0.1 + fml_utg_print_gfa@Base 0.1+git20190320.b499514-1 g_defr@Base 0.1 g_trinull@Base 0.1 kh_clear_64@Base 0.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1+git20190320.b499514-1_i386.deb'. dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20190320.b499514-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.buildinfo dpkg-genchanges --build=binary -O../fermi-lite_0.1+git20190320.b499514-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/46569 and its subdirectories I: Current time: Sun Nov 24 05:13:56 -12 2024 I: pbuilder-time-stamp: 1732468436 Sun Nov 24 17:13:58 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Sun Nov 24 17:13:58 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Sun Nov 24 17:13:58 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Sun Nov 24 17:13:58 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-9BEM6k' ==================================================================================== Sat Dec 27 23:36:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "2 fermi-lite unstable /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH 0.1+git20190320.b499514-1" as arguments. Sat Dec 27 23:36:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-w0K0kFCg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING mktemp: failed to create directory via template ‘/srv/reproducible-results/rbuild-debian/r-b-build.XXXXXXXX’: No space left on device Sat Dec 27 23:36:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-w0K0kFCg, removing. rsync: [sender] change_dir "/srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1865) [Receiver=3.2.7] rsync: [Receiver] write error: Broken pipe (32) Sun Nov 24 17:13:59 UTC 2024 W: rsync from ionos16-i386.debian.net failed, sleeping 2m before re-trying... rsync: [sender] change_dir "/srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1865) [Receiver=3.2.7] rsync: [Receiver] write error: Broken pipe (32) UPDATE 1 Sun Nov 24 17:16:00 UTC 2024 - https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/48204/console.log got remote error when rsyncing remote build #2 results from ionos16-i386.debian.net Sleeping 5m before aborting the job. Starting cleanup. /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/rbuildlog.C1vpemb: 75.9% -- replaced with /srv/reproducible-results/rbuild-debian/r-b-build.ro449LGH/rbuildlog.C1vpemb.gz [2024-11-24 17:21:00] INFO: Starting at 2024-11-24 17:21:00.939739 [2024-11-24 17:21:01] INFO: Generating the pages of 1 package(s) [2024-11-24 17:21:01] INFO: Finished at 2024-11-24 17:21:01.811103, took: 0:00:00.871373 All cleanup done. Sun Nov 24 17:21:01 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-nYsUI0Di, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 17.521s CPU time consumed: 4.998s