Running as unit: rb-build-i386_7-48407.service ==================================================================================== Mon Nov 25 16:53:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_7) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Mon Nov 25 16:53:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-GLTugfCH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 16:53:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 16:53:09 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-cZ4FHf' Mon Nov 25 16:53:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Mon Nov 25 16:53:09 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-iSe2Tg' ok, let's check if freebayes is building anywhere yet… ok, freebayes is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of freebayes in unstable on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Mon Nov 25 16:53:23 UTC 2024 I: starting to build freebayes/unstable/i386 on jenkins on '2024-11-25 16:53' Mon Nov 25 16:53:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/48407/console.log 1732553603 i386 unstable freebayes Mon Nov 25 16:53:23 UTC 2024 I: Downloading source for unstable/freebayes=1.3.7-1 --2024-11-25 16:53:24-- http://deb.debian.org/debian/pool/main/f/freebayes/freebayes_1.3.7-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2185 (2.1K) [text/prs.lines.tag] Saving to: ‘freebayes_1.3.7-1.dsc’ 0K .. 100% 329M=0s 2024-11-25 16:53:24 (329 MB/s) - ‘freebayes_1.3.7-1.dsc’ saved [2185/2185] --2024-11-25 16:53:24-- http://deb.debian.org/debian/pool/main/f/freebayes/freebayes_1.3.7-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2185 (2.1K) [text/prs.lines.tag] Saving to: ‘freebayes_1.3.7-1.dsc’ 0K .. 100% 329M=0s 2024-11-25 16:53:24 (329 MB/s) - ‘freebayes_1.3.7-1.dsc’ saved [2185/2185] Mon Nov 25 16:53:24 UTC 2024 I: freebayes_1.3.7-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.7-1 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel , libvcflib-tools , debhelper Package-List: freebayes deb science optional arch=any Checksums-Sha1: aa5e76b874f5daa90102152d542fa30f5bac701f 2901909 freebayes_1.3.7.orig.tar.gz a09e02c045aba29995c62fa6e4abf0ff78ea3766 11812 freebayes_1.3.7-1.debian.tar.xz Checksums-Sha256: 73de20987bfad317099e5bb2f651073351906b9fb1392d704332f401fbfbb5c6 2901909 freebayes_1.3.7.orig.tar.gz 952bcb0e3bb5f6583b3fea22a92c742b1b44e32669462d3b34bbaf819d6a5b56 11812 freebayes_1.3.7-1.debian.tar.xz Files: 83a9eaef72b98e3c03c287ec73c69687 2901909 freebayes_1.3.7.orig.tar.gz 3c6f7bea75fda1cf07ba01381993bde4 11812 freebayes_1.3.7-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTjVdAACgkQPCZ2P2xn 5uIY3RAAzZaoII+50EQ5LZUGZSNAnPkI7I7TTjJvPcqXp4+Mq4ugFdt1b6vTqucx AhNG9ICJBgPdNYbkpR3XKif6396BlVJprztnuHi4xIwKN3qNZWGOeRz/wRnYl78X 8MVSi4bOHr+/wW9pdrVe5yWQ9Lc66TudfNh176T3CEWVjljQ1nH5lbboab4jp7FN y7peGqhnClyMgXTf8CE8ATph0s+ZdzsTEv2BK+Kqg5wD2R4l8gZoJKiXAH9qwOEr lcOXP5rkz27AosCVvsSvj4Bi8qCf7myH3nbo6dpoIqsSA4ktQ/1IKfnlsd54Qm+i UgfTrMYM0qutY+vFOCnRoG+hyss/c0dWuuE8/Yng97qKRB7JElr3vVMWuSEmDz5F kJe4Ls7l8hzd+2f15fGLXXxcMc10sTc/Cn3tqYmQYi1Llwn4r80XQsSpjlk7RU5S tqI/mGRwxm+DfXFS7RYDxCSXGeoZ07CyHvaDDZq26jz8RbwJ3bDzA95Ae2i2q6x0 xa+dhkSTmFD+iWLQcHnMCylWLCaWdysUqpCey44htQLFUEcDU1y0XlC9VCcwnsfT cHi4v20aUl0RHN6VjnaLdurENDrHgrxz/j6MOBumraKovUVT9DZuB1c7qVgtGOC7 AhyCPqDADFuXF3tcNK5D4Sy7yAw8rSBCuFBFUqo1VLuj2wOKfBA= =PUXc -----END PGP SIGNATURE----- Mon Nov 25 16:53:24 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 16:53:24 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Nov 25 16:53:24 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Nov 25 16:53:24 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 16:53:24 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-AlQYYK' ==================================================================================== Mon Nov 25 16:53:25 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 freebayes unstable /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr 1.3.7-1" as arguments. Mon Nov 25 16:53:25 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-38INTzSS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 16:53:25 UTC 2024 I: Downloading source for unstable/freebayes=1.3.7-1 Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2916 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (dsc) [2185 B] Get:2 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (tar) [2902 kB] Get:3 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (diff) [11.8 kB] Fetched 2916 kB in 0s (24.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2916 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (dsc) [2185 B] Get:2 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (tar) [2902 kB] Get:3 http://deb.debian.org/debian unstable/main freebayes 1.3.7-1 (diff) [11.8 kB] Fetched 2916 kB in 0s (24.7 MB/s) Download complete and in download only mode ============================================================================= Building freebayes in unstable on i386 on ionos12-i386 now. Date: Mon Nov 25 17:53:25 CET 2024 Date UTC: Mon Nov 25 16:53:25 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 04:53:26 -12 2024 I: pbuilder-time-stamp: 1732553606 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [freebayes_1.3.7-1.dsc] I: copying [./freebayes_1.3.7.orig.tar.gz] I: copying [./freebayes_1.3.7-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 21 12:17:20 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.7-1.dsc: no acceptable signature found dpkg-source: info: extracting freebayes in freebayes-1.3.7 dpkg-source: info: unpacking freebayes_1.3.7.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49419/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='23aa680299ce4aab8346ddf75ac937d7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='49419' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/pbuilderrc_esTi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/b1 --logfile b1/build.log freebayes_1.3.7-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/49419/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel, libvcflib-tools, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-dev (>= 1.0.9+dfsg-1~); however: Package libvcflib-dev is not installed. pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however: Package libtabixpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqlib-dev; however: Package libseqlib-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on parallel; however: Package parallel is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-tools; however: Package libvcflib-tools is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli-dev{a} libbrotli1{a} libbwa-dev{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron bzip2-doc ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 52.5 MB of archives. After unpacking 181 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libvcflib-dev (>= 1.0.9+dfsg-1~) which is a virtual package and is not provided by any available package Depends: libvcflib-tools which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli-dev{a} libbrotli1{a} libbwa-dev{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron bzip2-doc ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 52.5 MB of archives. After unpacking 181 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49419 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 16:53:45 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-38INTzSS, removing. /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 16:53 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 16:53 b2 -rw-r--r-- 1 jenkins jenkins 2185 Aug 21 2023 freebayes_1.3.7-1.dsc -rw------- 1 jenkins jenkins 3296 Nov 25 16:53 rbuildlog.EvTtpbj /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/b1: total 16 -rw-r--r-- 1 jenkins jenkins 12596 Nov 25 16:53 build.log /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/b2: total 0 Mon Nov 25 16:53:46 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 04:53:26 -12 2024 I: pbuilder-time-stamp: 1732553606 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [freebayes_1.3.7-1.dsc] I: copying [./freebayes_1.3.7.orig.tar.gz] I: copying [./freebayes_1.3.7-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 21 12:17:20 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.7-1.dsc: no acceptable signature found dpkg-source: info: extracting freebayes in freebayes-1.3.7 dpkg-source: info: unpacking freebayes_1.3.7.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49419/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='23aa680299ce4aab8346ddf75ac937d7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='49419' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/pbuilderrc_esTi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8bmSBlZr/b1 --logfile b1/build.log freebayes_1.3.7-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/49419/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel, libvcflib-tools, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-dev (>= 1.0.9+dfsg-1~); however: Package libvcflib-dev is not installed. pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however: Package libtabixpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqlib-dev; however: Package libseqlib-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on parallel; however: Package parallel is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-tools; however: Package libvcflib-tools is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli-dev{a} libbrotli1{a} libbwa-dev{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron bzip2-doc ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 52.5 MB of archives. After unpacking 181 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libvcflib-dev (>= 1.0.9+dfsg-1~) which is a virtual package and is not provided by any available package Depends: libvcflib-tools which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli-dev{a} libbrotli1{a} libbwa-dev{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron bzip2-doc ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. Need to get 52.5 MB of archives. After unpacking 181 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49419 and its subdirectories freebayes failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/freebayes_1.3.7-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/freebayes_1.3.7-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/freebayes_1.3.7-1.build1.log.gz' Mon Nov 25 16:53:47 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 72.2% -- replaced with stdout Mon Nov 25 16:53:47 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 16:53:47 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 16:53:47 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 16:53:47] INFO: Starting at 2024-11-25 16:53:47.878330 [2024-11-25 16:53:47] INFO: Generating the pages of 1 package(s) [2024-11-25 16:53:48] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:48] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:48] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:48] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/freebayes didn't produce a buildlog, even though it has been built. [2024-11-25 16:53:48] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:48] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/armhf/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/armhf/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:49] INFO: Finished at 2024-11-25 16:53:49.023082, took: 0:00:01.144759 Mon Nov 25 16:53:49 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/freebayes.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/freebayes_1.3.7-1.rbuild.log: 67.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/freebayes_1.3.7-1.rbuild.log.gz [2024-11-25 16:53:49] INFO: Starting at 2024-11-25 16:53:49.415265 [2024-11-25 16:53:49] INFO: Generating the pages of 1 package(s) [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/freebayes_1.3.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/freebayes_1.3.7-1.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/armhf/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/armhf/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/freebayes_1.3.7-1~exp.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/freebayes_1.3.7-1~exp.diff.gz is missing [2024-11-25 16:53:50] INFO: Finished at 2024-11-25 16:53:50.534063, took: 0:00:01.118803 All cleanup done. Mon Nov 25 16:53:50 UTC 2024 - total duration: 0h 0m 38s. Mon Nov 25 16:53:50 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-GLTugfCH, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 41.728s CPU time consumed: 6.198s