Running as unit: rb-build-i386_7-48436.service ==================================================================================== Mon Nov 25 17:35:12 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_7) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Mon Nov 25 17:35:12 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Mse7YXoE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:35:12 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 17:35:12 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-LDJumY' Mon Nov 25 17:35:13 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Mon Nov 25 17:35:13 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-zFlEzU' ok, let's check if plasmidid is building anywhere yet… ok, plasmidid is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of plasmidid in trixie on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Mon Nov 25 17:35:19 UTC 2024 I: starting to build plasmidid/trixie/i386 on jenkins on '2024-11-25 17:35' Mon Nov 25 17:35:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/48436/console.log 1732556119 i386 trixie plasmidid Mon Nov 25 17:35:19 UTC 2024 I: Downloading source for trixie/plasmidid=1.6.5+dfsg-2 --2024-11-25 17:35:20-- http://deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.5+dfsg-2.dsc’ 0K .. 100% 96.9M=0s 2024-11-25 17:35:20 (96.9 MB/s) - ‘plasmidid_1.6.5+dfsg-2.dsc’ saved [2224/2224] --2024-11-25 17:35:20-- http://deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.5+dfsg-2.dsc’ 0K .. 100% 96.9M=0s 2024-11-25 17:35:20 (96.9 MB/s) - ‘plasmidid_1.6.5+dfsg-2.dsc’ saved [2224/2224] Mon Nov 25 17:35:20 UTC 2024 I: plasmidid_1.6.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plasmidid Binary: plasmidid Architecture: any Version: 1.6.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: https://github.com/BU-ISCIII/plasmidID Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plasmidid Vcs-Git: https://salsa.debian.org/med-team/plasmidid.git Build-Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+ , bedtools , bowtie2 , samtools , prokka , cd-hit , mash , circos Package-List: plasmidid deb science optional arch=any Checksums-Sha1: aaf8de5458960d7cdcec525688ac606b65f4c0cd 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 5c6cc06a86c74352ffce0c770b8d61b6b8c21c19 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Checksums-Sha256: bbe9f8caae7711ca59a5826c6cadf1cca152862a40a1a54361602bddad6d0766 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz e58d797183242730628416a56c29a188227022eec210f67e0253d0fbcf887b90 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Files: e4c746c886d3384c790a73039e8d6f1b 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 018ade6017602b77c549c0a13b0138e0 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/nRQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHW4w//VSK3vFvSQdIsOsxhRrwG5ANMO5JRIV7e D1MgAk5qYnq/fgTRH16kPEF82KNRHlVlZTW1QCSkKZGweTUnUbuU5OtBUjtUv+lt kEirZK0drlPDu85Z1QPbN8PVy92k4jCaEoiLIssMkjsMhYgvVqFmS7TlVvLlJziv 7A3fIpdEds7aF76DEpYY2ONjgbTnehbp28qBTy4JyHjZ1BBXhgzokwCFfwzCccgC CqjmlvCvA0W5rdAeHIvZj7CQtYTar2EhJ7BacEGtPBz2kS8BzxxJpAFNaLTAmdck l2ng+thQuzS5X25msMZ/xqDA5l3mx0CmmStR07Xc2DUg5yrK7pKFyiRPhO6qx9Ho 2CqeWZSquhVAmI4dUDIebD7vkwdiGfzkPsEbM6vgtmVA4iZAI1ALAIluRO0nxIoY h0rAegbsSPt4D4XASVJBJ3RFV6aHSCz2bhO4xGAEFvdLKI+/bkHgUvtW12o5kEHD R4K3J9aB1+GPpVMk6Odw0wUV5Pm5msRDc6xCcQuT+swa2iEhQ6+7fy/cG8ajLnHv qciukAFcCYehUYJqW0WYQCmTJg0c1m+IxGGQdNFo4OTy5oqF2TQ4GtD1h22ZwdYp rldn7/XNvTARPe7j+q+eK1ny4gyYXge8xEFsRZkNqOgriiOxVlhSlh0V79rdkLtj 3QRgEn4QBlg= =/Dmf -----END PGP SIGNATURE----- Mon Nov 25 17:35:20 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:35:20 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Nov 25 17:35:20 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Nov 25 17:35:20 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 17:35:20 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-0xHf8p' ==================================================================================== Mon Nov 25 17:35:21 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 plasmidid trixie /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED 1.6.5+dfsg-2" as arguments. Mon Nov 25 17:35:21 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-q27vDCcS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:35:21 UTC 2024 I: Downloading source for trixie/plasmidid=1.6.5+dfsg-2 Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (dsc) [2224 B] Get:2 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (tar) [84.7 MB] Get:3 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (diff) [4040 B] Fetched 84.8 MB in 2s (42.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (dsc) [2224 B] Get:2 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (tar) [84.7 MB] Get:3 http://deb.debian.org/debian trixie/main plasmidid 1.6.5+dfsg-2 (diff) [4040 B] Fetched 84.8 MB in 2s (42.2 MB/s) Download complete and in download only mode ============================================================================= Building plasmidid in trixie on i386 on ionos12-i386 now. Date: Mon Nov 25 18:35:24 CET 2024 Date UTC: Mon Nov 25 17:35:24 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:35:24 -12 2024 I: pbuilder-time-stamp: 1732556124 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plasmidid_1.6.5+dfsg-2.dsc] I: copying [./plasmidid_1.6.5+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 16:34:28 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plasmidid_1.6.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plasmidid in plasmidid-1.6.5+dfsg dpkg-source: info: unpacking plasmidid_1.6.5+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3361/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='60a41b0e0041435fbca12a3b93c008de' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3361' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/pbuilderrc_bWE5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/b1 --logfile b1/build.log plasmidid_1.6.5+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aragorn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cd-hit{a} circos{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} help2man{a} hicolor-icon-theme{a} hmmer{a} infernal{a} intltool-debian{a} java-common{a} less{a} libabsl20230802{a} libaom3{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbio-searchio-hmmer-perl{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcarp-always-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libconfig-general-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdivsufsort3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd-perl{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgetopt-simple-perl{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm19{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncbi6t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libnumber-format-perl{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-validate-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsvg-perl{a} libsvtav1enc2{a} libswiss-perl{a} libsystemd-shared{a} libtext-format-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} ncbi-blast+{a} ncbi-data{a} ncbi-tools-bin{a} netbase{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} parallel{a} po-debconf{a} procps{a} prodigal{a} prokka{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} sysstat{a} systemd{a} systemd-sysv{a} tzdata{a} ucf{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core bioperl-run chrony circos-tools curl fonts-dejavu-extra krb5-locales libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libatk-wrapper-java-jni libbio-asn1-entrezgene-perl libbio-perl-run-perl libcgi-pm-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-parser-perl libhtml-tableextract-perl libkmod2 libldap-common liblist-moreutils-perl liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libnss-systemd libpod-coverage-perl libpostscript-perl librsvg2-common libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libtest-pod-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd perl-tk psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 298 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 1111 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Depends: mash which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} aragorn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cd-hit{a} circos{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} help2man{a} hicolor-icon-theme{a} hmmer{a} infernal{a} intltool-debian{a} java-common{a} less{a} libabsl20230802{a} libaom3{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbio-searchio-hmmer-perl{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcarp-always-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libconfig-general-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdivsufsort3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd-perl{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgetopt-simple-perl{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm19{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncbi6t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libnumber-format-perl{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-validate-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsvg-perl{a} libsvtav1enc2{a} libswiss-perl{a} libsystemd-shared{a} libtext-format-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} ncbi-blast+{a} ncbi-data{a} ncbi-tools-bin{a} netbase{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} parallel{a} po-debconf{a} procps{a} prodigal{a} prokka{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} sysstat{a} systemd{a} systemd-sysv{a} tzdata{a} ucf{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core bioperl-run chrony circos-tools curl fonts-dejavu-extra krb5-locales libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libatk-wrapper-java-jni libbio-asn1-entrezgene-perl libbio-perl-run-perl libcgi-pm-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-parser-perl libhtml-tableextract-perl libkmod2 libldap-common liblist-moreutils-perl liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libnss-systemd libpod-coverage-perl libpostscript-perl librsvg2-common libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libtest-pod-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd perl-tk psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 298 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 1111 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3361 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 17:35:50 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-q27vDCcS, removing. /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:35 b2 -rw-r--r-- 1 jenkins jenkins 2224 Nov 24 2022 plasmidid_1.6.5+dfsg-2.dsc -rw------- 1 jenkins jenkins 3359 Nov 25 17:35 rbuildlog.ulrboG0 /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/b1: total 20 -rw-r--r-- 1 jenkins jenkins 20216 Nov 25 17:35 build.log /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/b2: total 0 Mon Nov 25 17:35:50 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:35:24 -12 2024 I: pbuilder-time-stamp: 1732556124 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plasmidid_1.6.5+dfsg-2.dsc] I: copying [./plasmidid_1.6.5+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 16:34:28 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plasmidid_1.6.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plasmidid in plasmidid-1.6.5+dfsg dpkg-source: info: unpacking plasmidid_1.6.5+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3361/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='60a41b0e0041435fbca12a3b93c008de' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3361' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/pbuilderrc_bWE5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S28J6xED/b1 --logfile b1/build.log plasmidid_1.6.5+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aragorn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cd-hit{a} circos{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} help2man{a} hicolor-icon-theme{a} hmmer{a} infernal{a} intltool-debian{a} java-common{a} less{a} libabsl20230802{a} libaom3{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbio-searchio-hmmer-perl{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcarp-always-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libconfig-general-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdivsufsort3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd-perl{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgetopt-simple-perl{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm19{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncbi6t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libnumber-format-perl{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-validate-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsvg-perl{a} libsvtav1enc2{a} libswiss-perl{a} libsystemd-shared{a} libtext-format-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} ncbi-blast+{a} ncbi-data{a} ncbi-tools-bin{a} netbase{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} parallel{a} po-debconf{a} procps{a} prodigal{a} prokka{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} sysstat{a} systemd{a} systemd-sysv{a} tzdata{a} ucf{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core bioperl-run chrony circos-tools curl fonts-dejavu-extra krb5-locales libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libatk-wrapper-java-jni libbio-asn1-entrezgene-perl libbio-perl-run-perl libcgi-pm-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-parser-perl libhtml-tableextract-perl libkmod2 libldap-common liblist-moreutils-perl liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libnss-systemd libpod-coverage-perl libpostscript-perl librsvg2-common libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libtest-pod-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd perl-tk psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 298 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 1111 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Depends: mash which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} aragorn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cd-hit{a} circos{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} help2man{a} hicolor-icon-theme{a} hmmer{a} infernal{a} intltool-debian{a} java-common{a} less{a} libabsl20230802{a} libaom3{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbio-searchio-hmmer-perl{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcarp-always-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libconfig-general-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdivsufsort3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd-perl{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgetopt-simple-perl{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm19{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncbi6t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libnumber-format-perl{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-validate-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsvg-perl{a} libsvtav1enc2{a} libswiss-perl{a} libsystemd-shared{a} libtext-format-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} ncbi-blast+{a} ncbi-data{a} ncbi-tools-bin{a} netbase{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} parallel{a} po-debconf{a} procps{a} prodigal{a} prokka{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} sysstat{a} systemd{a} systemd-sysv{a} tzdata{a} ucf{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core bioperl-run chrony circos-tools curl fonts-dejavu-extra krb5-locales libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libatk-wrapper-java-jni libbio-asn1-entrezgene-perl libbio-perl-run-perl libcgi-pm-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-parser-perl libhtml-tableextract-perl libkmod2 libldap-common liblist-moreutils-perl liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libnss-systemd libpod-coverage-perl libpostscript-perl librsvg2-common libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libtest-pod-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd perl-tk psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 298 newly installed, 0 to remove and 0 not upgraded. Need to get 246 MB of archives. After unpacking 1111 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3361 and its subdirectories plasmidid failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/plasmidid_1.6.5+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/plasmidid_1.6.5+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build1.log.gz' Mon Nov 25 17:35:51 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 75.4% -- replaced with stdout Mon Nov 25 17:35:51 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 17:35:51 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 17:35:51 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:35:52] INFO: Starting at 2024-11-25 17:35:52.606267 [2024-11-25 17:35:52] INFO: Generating the pages of 1 package(s) [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/plasmidid didn't produce a buildlog, even though it has been built. [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:54] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:54] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:54] INFO: Finished at 2024-11-25 17:35:54.056349, took: 0:00:01.450086 Mon Nov 25 17:35:54 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/plasmidid.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/plasmidid_1.6.5+dfsg-2.rbuild.log: 71.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/plasmidid_1.6.5+dfsg-2.rbuild.log.gz [2024-11-25 17:35:54] INFO: Starting at 2024-11-25 17:35:54.442141 [2024-11-25 17:35:54] INFO: Generating the pages of 1 package(s) [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 17:35:55] INFO: Finished at 2024-11-25 17:35:55.668256, took: 0:00:01.226120 All cleanup done. Mon Nov 25 17:35:55 UTC 2024 - total duration: 0h 0m 39s. Mon Nov 25 17:35:55 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Mse7YXoE, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 43.517s CPU time consumed: 6.523s