Running as unit: rb-build-i386_7-48445.service ==================================================================================== Mon Nov 25 17:41:21 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_7) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Mon Nov 25 17:41:21 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lBdmW9Ev" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:41:21 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 17:41:21 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-gi4D7P' Mon Nov 25 17:41:21 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Mon Nov 25 17:41:21 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-yAJPFa' ok, let's check if r-bioc-ballgown is building anywhere yet… ok, r-bioc-ballgown is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-ballgown in trixie on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Mon Nov 25 17:41:47 UTC 2024 I: starting to build r-bioc-ballgown/trixie/i386 on jenkins on '2024-11-25 17:41' Mon Nov 25 17:41:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/48445/console.log 1732556507 i386 trixie r-bioc-ballgown Mon Nov 25 17:41:47 UTC 2024 I: Downloading source for trixie/r-bioc-ballgown=2.36.0+dfsg-1 --2024-11-25 17:41:48-- http://deb.debian.org/debian/pool/main/r/r-bioc-ballgown/r-bioc-ballgown_2.36.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2372 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-ballgown_2.36.0+dfsg-1.dsc’ 0K .. 100% 304M=0s 2024-11-25 17:41:48 (304 MB/s) - ‘r-bioc-ballgown_2.36.0+dfsg-1.dsc’ saved [2372/2372] --2024-11-25 17:41:48-- http://deb.debian.org/debian/pool/main/r/r-bioc-ballgown/r-bioc-ballgown_2.36.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2372 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-ballgown_2.36.0+dfsg-1.dsc’ 0K .. 100% 304M=0s 2024-11-25 17:41:48 (304 MB/s) - ‘r-bioc-ballgown_2.36.0+dfsg-1.dsc’ saved [2372/2372] Mon Nov 25 17:41:48 UTC 2024 I: r-bioc-ballgown_2.36.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-ballgown Binary: r-bioc-ballgown Architecture: all Version: 2.36.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/ballgown/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-ballgown Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-ballgown.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-bioc-s4vectors (>= 0.42.1), r-cran-rcolorbrewer, r-bioc-sva (>= 3.52.0), r-bioc-limma (>= 3.60.4), r-bioc-rtracklayer (>= 1.64.0), r-bioc-biobase (>= 2.64.0), r-bioc-genomeinfodb (>= 1.40.1), r-cran-knitr, r-cran-markdown Package-List: r-bioc-ballgown deb gnu-r optional arch=all Checksums-Sha1: 0f2bd6e83d906a9ddce5b516fce7c0b94dabd5bf 2496788 r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz 3106d6222a1c1601ab8559668235c8b8858aef48 6036 r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz Checksums-Sha256: d6b77d6c4bb730121b751d948f62ab07aeeb6ef336ac71a6416147812533d92a 2496788 r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz bd961070c33650ad3b54def6c7542f2955a461f9a7e48c22cc188a8c8372af1a 6036 r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz Files: de3956f6354c62970cafc38745245ab6 2496788 r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz 0571bfefcf751bd1f5eebac5e7312a3e 6036 r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbBzGgACgkQPCZ2P2xn 5uJuNRAApNkfgn3wPdiTswxEAsIEKzuwgrH37QBoAfuC/N281rSUq8DfJvbFrxT5 5gFmgWTKe6eoOPMSzP5YEWxx6P+LeyDVsPs9Q7DnVCuDL5/jwZdfJW4Hchd0ULsB irDkN3xtsB2mxCD03MbH95i6bUE+6MxGwS2SP1EMHoJGI0NDQRn0xbGKzsfy8E2h rNLHkP3h04Yhl8OwB3oZrQHy/9OTZHgKb0SMtpJNCDosc7Rv/7GwmmQKR6Sf9b63 x/3j2kH4UOVRJbcKnCScuTQLA38wcnY/zWbxrtpeAMXB/A8xLGW+JkEqXh0JuD2a atbq+zw4iilS1cmoWwNWsOe78Jji0ckDpAXdgKNQRBJmetroOu8wwIGpDv79teoS ivuWzvyDWBLINl4kvdLHdK0BGFrb5lQXX4hLc3iUKA7lbKmtIf1AK+oSE9I49bBW lTv/BaLYtAAHgSX45YkKUOqSIDMBEV+vU6AnV1DtqhIbPP785qUXVH9ZsARqpYMJ fEmL7sliguKi9p+vjLNmXRjdvhNICAfw0cuAHJX/g+SzNFyugP9R9YtgG8vACf3N 9GGU6crVC/SJFgOKBMxy0qbcf5XAcjIZQ1JII5PATfHsMMWdCvHLpX9lma+DJYVx 0JmnJ1NSI2VWJYKRi51EBb2eOnrOESJ/lklr53sNXj9Yr13LzZI= =m9Hw -----END PGP SIGNATURE----- Mon Nov 25 17:41:48 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:41:48 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Nov 25 17:41:48 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Nov 25 17:41:48 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Mon Nov 25 17:41:48 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-F52C6k' ==================================================================================== Mon Nov 25 17:41:49 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 r-bioc-ballgown trixie /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ 2.36.0+dfsg-1" as arguments. Mon Nov 25 17:41:49 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-fBcBURsA" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:41:49 UTC 2024 I: Downloading source for trixie/r-bioc-ballgown=2.36.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-ballgown' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-ballgown.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-ballgown.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2505 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (dsc) [2372 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (tar) [2497 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (diff) [6036 B] Fetched 2505 kB in 0s (32.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-ballgown' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-ballgown.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-ballgown.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2505 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (dsc) [2372 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (tar) [2497 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-ballgown 2.36.0+dfsg-1 (diff) [6036 B] Fetched 2505 kB in 0s (32.1 MB/s) Download complete and in download only mode ============================================================================= Building r-bioc-ballgown in trixie on i386 on ionos12-i386 now. Date: Mon Nov 25 18:41:49 CET 2024 Date UTC: Mon Nov 25 17:41:49 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:41:50 -12 2024 I: pbuilder-time-stamp: 1732556510 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-ballgown_2.36.0+dfsg-1.dsc] I: copying [./r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz] I: copying [./r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:26:48 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ballgown_2.36.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ballgown in r-bioc-ballgown-2.36.0+dfsg dpkg-source: info: unpacking r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9604/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='439eb70e1ebe4c88a4c934b76e889cf2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9604' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/pbuilderrc_Hvf1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/b1 --logfile b1/build.log r-bioc-ballgown_2.36.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9604/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-bioc-s4vectors (>= 0.42.1), r-cran-rcolorbrewer, r-bioc-sva (>= 3.52.0), r-bioc-limma (>= 3.60.4), r-bioc-rtracklayer (>= 1.64.0), r-bioc-biobase (>= 2.64.0), r-bioc-genomeinfodb (>= 1.40.1), r-cran-knitr, r-cran-markdown dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva (>= 3.52.0); however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma (>= 3.60.4); however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.64.0); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.40.1); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-commonmark{a} r-cran-evaluate{a} r-cran-highr{a} r-cran-knitr{a} r-cran-markdown{a} r-cran-rcolorbrewer{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bslib r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-digest r-cran-formatr r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-jpeg r-cran-jsonlite r-cran-lattice r-cran-magick r-cran-mime r-cran-png r-cran-ragg r-cran-rcurl r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-svglite r-cran-testit r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-webshot r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 204 newly installed, 0 to remove and 0 not upgraded. Need to get 120 MB of archives. After unpacking 384 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-genomicranges (>= 1.56.1) which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-sva (>= 3.52.0) which is a virtual package and is not provided by any available package Depends: r-bioc-limma (>= 3.60.4) which is a virtual package and is not provided by any available package Depends: r-bioc-rtracklayer (>= 1.64.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomeinfodb (>= 1.40.1) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-commonmark{a} r-cran-evaluate{a} r-cran-highr{a} r-cran-knitr{a} r-cran-markdown{a} r-cran-rcolorbrewer{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bslib r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-digest r-cran-formatr r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-jpeg r-cran-jsonlite r-cran-lattice r-cran-magick r-cran-mime r-cran-png r-cran-ragg r-cran-rcurl r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-svglite r-cran-testit r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-webshot r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 204 newly installed, 0 to remove and 0 not upgraded. Need to get 120 MB of archives. After unpacking 384 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9604 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 17:42:09 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-fBcBURsA, removing. /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:42 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:41 b2 -rw-r--r-- 1 jenkins jenkins 2372 Aug 18 10:30 r-bioc-ballgown_2.36.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 3553 Nov 25 17:41 rbuildlog.11cjtjJ /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/b1: total 20 -rw-r--r-- 1 jenkins jenkins 17635 Nov 25 17:42 build.log /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/b2: total 0 Mon Nov 25 17:42:10 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:41:50 -12 2024 I: pbuilder-time-stamp: 1732556510 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-ballgown_2.36.0+dfsg-1.dsc] I: copying [./r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz] I: copying [./r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:26:48 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ballgown_2.36.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ballgown in r-bioc-ballgown-2.36.0+dfsg dpkg-source: info: unpacking r-bioc-ballgown_2.36.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ballgown_2.36.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9604/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='439eb70e1ebe4c88a4c934b76e889cf2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9604' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/pbuilderrc_Hvf1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8jFxkvxZ/b1 --logfile b1/build.log r-bioc-ballgown_2.36.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9604/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-bioc-s4vectors (>= 0.42.1), r-cran-rcolorbrewer, r-bioc-sva (>= 3.52.0), r-bioc-limma (>= 3.60.4), r-bioc-rtracklayer (>= 1.64.0), r-bioc-biobase (>= 2.64.0), r-bioc-genomeinfodb (>= 1.40.1), r-cran-knitr, r-cran-markdown dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva (>= 3.52.0); however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma (>= 3.60.4); however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.64.0); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.40.1); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-commonmark{a} r-cran-evaluate{a} r-cran-highr{a} r-cran-knitr{a} r-cran-markdown{a} r-cran-rcolorbrewer{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bslib r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-digest r-cran-formatr r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-jpeg r-cran-jsonlite r-cran-lattice r-cran-magick r-cran-mime r-cran-png r-cran-ragg r-cran-rcurl r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-svglite r-cran-testit r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-webshot r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 204 newly installed, 0 to remove and 0 not upgraded. Need to get 120 MB of archives. After unpacking 384 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-genomicranges (>= 1.56.1) which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-sva (>= 3.52.0) which is a virtual package and is not provided by any available package Depends: r-bioc-limma (>= 3.60.4) which is a virtual package and is not provided by any available package Depends: r-bioc-rtracklayer (>= 1.64.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomeinfodb (>= 1.40.1) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-commonmark{a} r-cran-evaluate{a} r-cran-highr{a} r-cran-knitr{a} r-cran-markdown{a} r-cran-rcolorbrewer{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bslib r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-digest r-cran-formatr r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-jpeg r-cran-jsonlite r-cran-lattice r-cran-magick r-cran-mime r-cran-png r-cran-ragg r-cran-rcurl r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-svglite r-cran-testit r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-webshot r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 204 newly installed, 0 to remove and 0 not upgraded. Need to get 120 MB of archives. After unpacking 384 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9604 and its subdirectories r-bioc-ballgown failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.build1.log.gz' Mon Nov 25 17:42:11 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 75.3% -- replaced with stdout Mon Nov 25 17:42:11 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 17:42:11 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 17:42:11 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:42:12] INFO: Starting at 2024-11-25 17:42:12.046909 [2024-11-25 17:42:12] INFO: Generating the pages of 1 package(s) [2024-11-25 17:42:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:12] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-ballgown didn't produce a buildlog, even though it has been built. [2024-11-25 17:42:12] INFO: Finished at 2024-11-25 17:42:12.686322, took: 0:00:00.639419 Mon Nov 25 17:42:12 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-ballgown.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.rbuild.log: 71.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.rbuild.log.gz [2024-11-25 17:42:13] INFO: Starting at 2024-11-25 17:42:13.067634 [2024-11-25 17:42:13] INFO: Generating the pages of 1 package(s) [2024-11-25 17:42:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-ballgown_2.36.0+dfsg-1.diff.gz is missing [2024-11-25 17:42:13] INFO: Finished at 2024-11-25 17:42:13.598242, took: 0:00:00.530616 All cleanup done. Mon Nov 25 17:42:13 UTC 2024 - total duration: 0h 0m 50s. Mon Nov 25 17:42:13 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-lBdmW9Ev, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 52.525s CPU time consumed: 5.328s