Running as unit: rb-build-i386_9-32159.service ==================================================================================== Fri Nov 22 07:54:44 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_9) on jenkins, called using "ionos2-i386 ionos6-i386" as arguments. Fri Nov 22 07:54:45 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-4bLpL61p" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:54:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Fri Nov 22 07:54:45 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-LDbRQV' Fri Nov 22 07:54:46 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Fri Nov 22 07:54:46 UTC 2024 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-kv5Yph' ok, let's check if seqsero is building anywhere yet… ok, seqsero is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of seqsero in trixie on i386 on jenkins now. 1st build will be done on ionos2-i386.debian.net. 2nd build will be done on ionos6-i386.debian.net. ============================================================================= Fri Nov 22 07:55:08 UTC 2024 I: starting to build seqsero/trixie/i386 on jenkins on '2024-11-22 07:54' Fri Nov 22 07:55:08 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/32159/console.log 1732262108 i386 trixie seqsero Fri Nov 22 07:55:08 UTC 2024 I: Downloading source for trixie/seqsero=1.0.1+dfsg-6 --2024-11-22 07:55:08-- http://deb.debian.org/debian/pool/main/s/seqsero/seqsero_1.0.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2024 (2.0K) [text/prs.lines.tag] Saving to: ‘seqsero_1.0.1+dfsg-6.dsc’ 0K . 100% 264M=0s 2024-11-22 07:55:08 (264 MB/s) - ‘seqsero_1.0.1+dfsg-6.dsc’ saved [2024/2024] --2024-11-22 07:55:08-- http://deb.debian.org/debian/pool/main/s/seqsero/seqsero_1.0.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2024 (2.0K) [text/prs.lines.tag] Saving to: ‘seqsero_1.0.1+dfsg-6.dsc’ 0K . 100% 264M=0s 2024-11-22 07:55:08 (264 MB/s) - ‘seqsero_1.0.1+dfsg-6.dsc’ saved [2024/2024] Fri Nov 22 07:55:08 UTC 2024 I: seqsero_1.0.1+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqsero Binary: seqsero Architecture: any Version: 1.0.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/denglab/SeqSero Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seqsero Vcs-Git: https://salsa.debian.org/med-team/seqsero.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit Package-List: seqsero deb science optional arch=any Checksums-Sha1: 5531311d55cff8cb84ebade2499ebedf4732a883 355568 seqsero_1.0.1+dfsg.orig.tar.xz 873a8b6a41031621e9c7dd05e2ac890750be0feb 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz Checksums-Sha256: 37f9c68c941b5fe5648d86ad3e89235c3f7455aa3d2d933e75da211a9240bd0a 355568 seqsero_1.0.1+dfsg.orig.tar.xz 8e72e6bf6c087e0d533f1e2d7693686468b8b8820d71d19715783ec82a847156 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz Files: 53cee0dd133a96cf84b614df0ccf72df 355568 seqsero_1.0.1+dfsg.orig.tar.xz 640dc43659231fad76ee23541e5da9e4 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1n9wRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEzZBAAhws+Q68lNyn8s+h08GKNCdT8TIzEpxzw lUwZyI7Y9lNfu2qSaE+1X6qEVGaw+u5uMtvjqfU6sRu8jX6QtJKDTNXqJfIc15vc g5+3O8ubgAbChCWOxeJdpHHlaWnJ9CWxRld6QXFAWd7m35cSMAbo7s7dgTTpQdi9 dW4ZQ+Uo5AFQyXfXwN1BpeeoUJr9BHReBHb4tbPcxMYqljNc46CsfqpgyK7p2EGt jLatpM2oprHvaSFGaKGzo3leoF/8ClwI4CVFhoEwCESOsOGiZ+gQlUI3WMGS71uZ OUMLaEopUsUg0uByZI8ucRH8GxZ16S3LGUufrbjwAvWjWHfVKObQ0lGNC+PGNIBK V+Du/ztbQDO5SOXADEreCcV5p180GsXSB3XhDWHs3L9NmJb3xfoRfUTra/N/LNas fsI9rsm/rJYrouCtWZ6yDd1PMuJuE3nXbM4Bi+zKMbVWtwUC87BK9OD3VNXphu77 mjswMUyZlUt8vTY2b9pI+8qaUsEgGAsuAeAXqian6wCktTx7th8iaXck8QzrXDjO tj9l5DZLesyHJdpM+fFMFnqcqUvsVKdqTgWLY/wHMT26wGhiahllf2XloaopGSoi SMgR5nXmAj4BIiP3n/rfBrn7GwcknMiuvVnAxg9HpdmSScdNVg9Cs0WJaZk+l/4g ukbSIaL3XEA= =yjHb -----END PGP SIGNATURE----- Fri Nov 22 07:55:08 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 07:55:08 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Fri Nov 22 07:55:08 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Fri Nov 22 07:55:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Fri Nov 22 07:55:08 UTC 2024 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-94VrB9' ==================================================================================== Fri Nov 22 07:55:09 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos2-i386, called using "1 seqsero trixie /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl 1.0.1+dfsg-6" as arguments. Fri Nov 22 07:55:09 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-YbUxGuJ3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:55:10 UTC 2024 I: Downloading source for trixie/seqsero=1.0.1+dfsg-6 Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (6210 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian trixie/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (6210 kB/s) Download complete and in download only mode ============================================================================= Building seqsero in trixie on i386 on ionos2-i386 now. Date: Fri Nov 22 08:55:10 CET 2024 Date UTC: Fri Nov 22 07:55:10 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:55:10 -12 2024 I: pbuilder-time-stamp: 1732262110 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seqsero_1.0.1+dfsg-6.dsc] I: copying [./seqsero_1.0.1+dfsg.orig.tar.xz] I: copying [./seqsero_1.0.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 13:38:36 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting seqsero in seqsero-1.0.1+dfsg dpkg-source: info: unpacking seqsero_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking seqsero_1.0.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying fix_usage.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21572/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6dd63dc07f114ad89c6977c992607377' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21572' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/pbuilderrc_uxzb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/b1 --logfile b1/build.log seqsero_1.0.1+dfsg-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21572/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After unpacking 111 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After unpacking 111 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21572 and its subdirectories Starting cleanup. All cleanup done. Fri Nov 22 07:55:31 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-YbUxGuJ3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:55 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:55 b2 -rw------- 1 jenkins jenkins 3142 Nov 22 07:55 rbuildlog.rxo9oVX -rw-r--r-- 1 jenkins jenkins 2024 Sep 29 2022 seqsero_1.0.1+dfsg-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/b1: total 12 -rw-r--r-- 1 jenkins jenkins 8762 Nov 22 07:55 build.log /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/b2: total 0 Fri Nov 22 07:55:32 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:55:10 -12 2024 I: pbuilder-time-stamp: 1732262110 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seqsero_1.0.1+dfsg-6.dsc] I: copying [./seqsero_1.0.1+dfsg.orig.tar.xz] I: copying [./seqsero_1.0.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 13:38:36 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting seqsero in seqsero-1.0.1+dfsg dpkg-source: info: unpacking seqsero_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking seqsero_1.0.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying fix_usage.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21572/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6dd63dc07f114ad89c6977c992607377' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21572' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/pbuilderrc_uxzb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a1hw6ISl/b1 --logfile b1/build.log seqsero_1.0.1+dfsg-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21572/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After unpacking 111 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After unpacking 111 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21572 and its subdirectories seqsero failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/seqsero_1.0.1+dfsg-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/seqsero_1.0.1+dfsg-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqsero_1.0.1+dfsg-6.build1.log.gz' Fri Nov 22 07:55:33 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 66.6% -- replaced with stdout Fri Nov 22 07:55:33 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 07:55:33 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 07:55:33 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 07:55:33] INFO: Starting at 2024-11-22 07:55:33.858540 [2024-11-22 07:55:33] INFO: Generating the pages of 1 package(s) [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:35] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/seqsero didn't produce a buildlog, even though it has been built. [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:35] INFO: Finished at 2024-11-22 07:55:35.403732, took: 0:00:01.545196 Fri Nov 22 07:55:35 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/seqsero.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/seqsero_1.0.1+dfsg-6.rbuild.log: 62.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/seqsero_1.0.1+dfsg-6.rbuild.log.gz [2024-11-22 07:55:35] INFO: Starting at 2024-11-22 07:55:35.795134 [2024-11-22 07:55:35] INFO: Generating the pages of 1 package(s) [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/seqsero_1.0.1+dfsg-4.diff.gz is missing [2024-11-22 07:55:37] INFO: Finished at 2024-11-22 07:55:37.332215, took: 0:00:01.537087 All cleanup done. Fri Nov 22 07:55:37 UTC 2024 - total duration: 0h 0m 48s. Fri Nov 22 07:55:37 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-4bLpL61p, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 52.478s CPU time consumed: 7.191s