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1 | ·88c6e6dfc6699e77783824715e7647c3·63581488·debug·optional·last-align-dbgsym_1179-1_amd64.deb | 1 | ·88c6e6dfc6699e77783824715e7647c3·63581488·debug·optional·last-align-dbgsym_1179-1_amd64.deb |
2 | · | 2 | ·4ce785f10ce5a7f565cfc1b320b37f5b·1869052·science·optional·last-align_1179-1_amd64.deb |
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2 | -rw-r--r--···0········0········0·····4488·2021-02-01·10:32:34.000000·control.tar.xz | 2 | -rw-r--r--···0········0········0·····4488·2021-02-01·10:32:34.000000·control.tar.xz |
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138 | -rw-r--r--···0·root·········(0)·root·········(0)······291·2020-09-25·20:41:16.000000·./usr/share/doc-base/last-align-scripts | 138 | -rw-r--r--···0·root·········(0)·root·········(0)······291·2020-09-25·20:41:16.000000·./usr/share/doc-base/last-align-scripts |
139 | -rw-r--r--···0·root·········(0)·root·········(0)······295·2020-09-25·20:41:16.000000·./usr/share/doc-base/last-align-seeds | 139 | -rw-r--r--···0·root·········(0)·root·········(0)······295·2020-09-25·20:41:16.000000·./usr/share/doc-base/last-align-seeds |
140 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/share/man/ | 140 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/share/man/ |
141 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/share/man/man1/ | 141 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/share/man/man1/ |
142 | -rw-r--r--···0·root·········(0)·root·········(0)······342·2021-02-01·10:32:34.000000·./usr/share/man/man1/fastq-interleave.1.gz | 142 | -rw-r--r--···0·root·········(0)·root·········(0)······342·2021-02-01·10:32:34.000000·./usr/share/man/man1/fastq-interleave.1.gz |
143 | -rw-r--r--···0·root·········(0)·root·········(0)·····1288·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-dotplot.1.gz | 143 | -rw-r--r--···0·root·········(0)·root·········(0)·····1288·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-dotplot.1.gz |
144 | -rw-r--r--···0·root·········(0)·root·········(0)······429·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-map-probs.1.gz | 144 | -rw-r--r--···0·root·········(0)·root·········(0)······429·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-map-probs.1.gz |
145 | -rw-r--r--···0·root·········(0)·root·········(0)······32 | 145 | -rw-r--r--···0·root·········(0)·root·········(0)······326·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-merge-batches.1.gz |
146 | -rw-r--r--···0·root·········(0)·root·········(0)······637·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-pair-probs.1.gz | 146 | -rw-r--r--···0·root·········(0)·root·········(0)······637·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-pair-probs.1.gz |
147 | -rw-r--r--···0·root·········(0)·root·········(0)······324·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-postmask.1.gz | 147 | -rw-r--r--···0·root·········(0)·root·········(0)······324·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-postmask.1.gz |
148 | -rw-r--r--···0·root·········(0)·root·········(0)······75 | 148 | -rw-r--r--···0·root·········(0)·root·········(0)······758·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-split.1.gz |
149 | -rw-r--r--···0·root·········(0)·root·········(0)······76 | 149 | -rw-r--r--···0·root·········(0)·root·········(0)······760·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-split8.1.gz |
150 | -rw-r--r--···0·root·········(0)·root·········(0)·····1182·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-train.1.gz | 150 | -rw-r--r--···0·root·········(0)·root·········(0)·····1182·2021-02-01·10:32:34.000000·./usr/share/man/man1/last-train.1.gz |
151 | -rw-r--r--···0·root·········(0)·root·········(0)·····171 | 151 | -rw-r--r--···0·root·········(0)·root·········(0)·····1716·2021-02-01·10:32:34.000000·./usr/share/man/man1/lastal.1.gz |
152 | -rw-r--r--···0·root·········(0)·root·········(0)·····171 | 152 | -rw-r--r--···0·root·········(0)·root·········(0)·····1718·2021-02-01·10:32:34.000000·./usr/share/man/man1/lastal8.1.gz |
153 | -rw-r--r--···0·root·········(0)·root·········(0)······795·2021-02-01·10:32:34.000000·./usr/share/man/man1/lastdb.1.gz | 153 | -rw-r--r--···0·root·········(0)·root·········(0)······795·2021-02-01·10:32:34.000000·./usr/share/man/man1/lastdb.1.gz |
154 | -rw-r--r--···0·root·········(0)·root·········(0)······641·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-convert.1.gz | 154 | -rw-r--r--···0·root·········(0)·root·········(0)······641·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-convert.1.gz |
155 | -rw-r--r--···0·root·········(0)·root·········(0)······278·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-join.1.gz | 155 | -rw-r--r--···0·root·········(0)·root·········(0)······278·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-join.1.gz |
156 | -rw-r--r--···0·root·········(0)·root·········(0)······309·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-sort.1.gz | 156 | -rw-r--r--···0·root·········(0)·root·········(0)······309·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-sort.1.gz |
157 | -rw-r--r--···0·root·········(0)·root·········(0)······334·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-swap.1.gz | 157 | -rw-r--r--···0·root·········(0)·root·········(0)······334·2021-02-01·10:32:34.000000·./usr/share/man/man1/maf-swap.1.gz |
158 | lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/bin/last-merge-batches·->·../lib/last-align/simd-dispatch | 158 | lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/bin/last-merge-batches·->·../lib/last-align/simd-dispatch |
159 | lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/bin/last-pair-probs·->·../lib/last-align/simd-dispatch | 159 | lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2021-02-01·10:32:34.000000·./usr/bin/last-pair-probs·->·../lib/last-align/simd-dispatch |
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1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. | 1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. |
2 | .TH·LAST-MERGE-BATCHES·"1"·"February·2021"·"last-merge-batches·1179"·"User·Commands" | 2 | .TH·LAST-MERGE-BATCHES·"1"·"February·2021"·"last-merge-batches·1179"·"User·Commands" |
3 | .SH·NAME | 3 | .SH·NAME |
4 | last-merge-batches·\-·Read·files·of·lastal·output,·merge·corresponding·batches,·and·write·them | 4 | last-merge-batches·\-·Read·files·of·lastal·output,·merge·corresponding·batches,·and·write·them |
5 | .SH·SYNOPSIS | 5 | .SH·SYNOPSIS |
6 | .B·last-merge-batches-avx | 6 | .B·last-merge-batches-avx |
7 | \fI\,files\/\fR | 7 | \fI\,files\/\fR |
8 | .SH·DESCRIPTION | 8 | .SH·DESCRIPTION |
9 | Read·files·of·lastal·output,·merge·corresponding·batches,·and·write·them. | 9 | Read·files·of·lastal·output,·merge·corresponding·batches,·and·write·them. |
10 | .SH·OPTIONS | 10 | .SH·OPTIONS |
11 | .TP | 11 | .TP |
12 | \fB\-h\fR,·\fB\-\-help\fR | 12 | \fB\-h\fR,·\fB\-\-help\fR |
13 | show·this·help·message·and·exit | 13 | show·this·help·message·and·exit |
Offset 1, 13 lines modified | Offset 1, 13 lines modified | ||
1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. | 1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. |
2 | .TH·LAST-SPLIT·"1"·"February·2021"·"last-split·1179"·"User·Commands" | 2 | .TH·LAST-SPLIT·"1"·"February·2021"·"last-split·1179"·"User·Commands" |
3 | .SH·NAME | 3 | .SH·NAME |
4 | last-split·\-·Estimates·"split"·or·"spliced"·alignments. | 4 | last-split·\-·Estimates·"split"·or·"spliced"·alignments. |
5 | .SH·SYNOPSIS | 5 | .SH·SYNOPSIS |
6 | .B·last-split-avx | 6 | .B·last-split-avx |
7 | [\fI\,options\/\fR]·\fI\,LAST-alignments.maf\/\fR | 7 | [\fI\,options\/\fR]·\fI\,LAST-alignments.maf\/\fR |
8 | .SH·DESCRIPTION | 8 | .SH·DESCRIPTION |
9 | Read·alignments·of·query·sequences·to·a·genome,·and·estimate·the·genomic | 9 | Read·alignments·of·query·sequences·to·a·genome,·and·estimate·the·genomic |
10 | source·of·each·part·of·each·query,·allowing·different·parts·of·one·query·to | 10 | source·of·each·part·of·each·query,·allowing·different·parts·of·one·query·to |
11 | come·from·different·parts·of·the·genome. | 11 | come·from·different·parts·of·the·genome. |
12 | .SH·OPTIONS | 12 | .SH·OPTIONS |
13 | .TP | 13 | .TP |
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1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. | 1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. |
2 | .TH·LAST-SPLIT8·"1"·"February·2021"·"last-split8·1179"·"User·Commands" | 2 | .TH·LAST-SPLIT8·"1"·"February·2021"·"last-split8·1179"·"User·Commands" |
3 | .SH·NAME | 3 | .SH·NAME |
4 | last-split8·\-·Estimates·"split"·or·"spliced"·alignments. | 4 | last-split8·\-·Estimates·"split"·or·"spliced"·alignments. |
5 | .SH·SYNOPSIS | 5 | .SH·SYNOPSIS |
6 | .B·last-split8-avx | 6 | .B·last-split8-avx |
7 | [\fI\,options\/\fR]·\fI\,LAST-alignments.maf\/\fR | 7 | [\fI\,options\/\fR]·\fI\,LAST-alignments.maf\/\fR |
8 | .SH·DESCRIPTION | 8 | .SH·DESCRIPTION |
9 | Read·alignments·of·query·sequences·to·a·genome,·and·estimate·the·genomic | 9 | Read·alignments·of·query·sequences·to·a·genome,·and·estimate·the·genomic |
10 | source·of·each·part·of·each·query,·allowing·different·parts·of·one·query·to | 10 | source·of·each·part·of·each·query,·allowing·different·parts·of·one·query·to |
11 | come·from·different·parts·of·the·genome. | 11 | come·from·different·parts·of·the·genome. |
12 | .SH·OPTIONS | 12 | .SH·OPTIONS |
13 | .TP | 13 | .TP |
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1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. | 1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. |
2 | .TH·LASTAL·"1"·"February·2021"·"lastal·1179"·"User·Commands" | 2 | .TH·LASTAL·"1"·"February·2021"·"lastal·1179"·"User·Commands" |
3 | .SH·NAME | 3 | .SH·NAME |
4 | lastal·\-·genome-scale·comparison·of·biological·sequences | 4 | lastal·\-·genome-scale·comparison·of·biological·sequences |
5 | .SH·SYNOPSIS | 5 | .SH·SYNOPSIS |
6 | .B·lastal-avx | 6 | .B·lastal-avx |
7 | [\fI\,options\/\fR]·\fI\,lastdb-name·fasta-sequence-file(s)\/\fR | 7 | [\fI\,options\/\fR]·\fI\,lastdb-name·fasta-sequence-file(s)\/\fR |
8 | .SH·DESCRIPTION | 8 | .SH·DESCRIPTION |
9 | Find·and·align·similar·sequences. | 9 | Find·and·align·similar·sequences. |
10 | .PP | 10 | .PP |
11 | Cosmetic·options: | 11 | Cosmetic·options: |
12 | \fB\-h\fR,·\fB\-\-help\fR:·show·all·options·and·their·default·settings,·and·exit | 12 | \fB\-h\fR,·\fB\-\-help\fR:·show·all·options·and·their·default·settings,·and·exit |
13 | \fB\-V\fR,·\fB\-\-version\fR:·show·version·information,·and·exit | 13 | \fB\-V\fR,·\fB\-\-version\fR:·show·version·information,·and·exit |
Offset 1, 13 lines modified | Offset 1, 13 lines modified | ||
1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. | 1 | .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.48.1. |
2 | .TH·LASTAL8·"1"·"February·2021"·"lastal8·1179"·"User·Commands" | 2 | .TH·LASTAL8·"1"·"February·2021"·"lastal8·1179"·"User·Commands" |
3 | .SH·NAME | 3 | .SH·NAME |
4 | lastal8·\-·genome-scale·comparison·of·biological·sequences | 4 | lastal8·\-·genome-scale·comparison·of·biological·sequences |
5 | .SH·SYNOPSIS | 5 | .SH·SYNOPSIS |
6 | .B·lastal8-avx | 6 | .B·lastal8-avx |
7 | [\fI\,options\/\fR]·\fI\,lastdb-name·fasta-sequence-file(s)\/\fR | 7 | [\fI\,options\/\fR]·\fI\,lastdb-name·fasta-sequence-file(s)\/\fR |
8 | .SH·DESCRIPTION | 8 | .SH·DESCRIPTION |
9 | Find·and·align·similar·sequences. | 9 | Find·and·align·similar·sequences. |
10 | .PP | 10 | .PP |
11 | Cosmetic·options: | 11 | Cosmetic·options: |
12 | \fB\-h\fR,·\fB\-\-help\fR:·show·all·options·and·their·default·settings,·and·exit | 12 | \fB\-h\fR,·\fB\-\-help\fR:·show·all·options·and·their·default·settings,·and·exit |
13 | \fB\-V\fR,·\fB\-\-version\fR:·show·version·information,·and·exit | 13 | \fB\-V\fR,·\fB\-\-version\fR:·show·version·information,·and·exit |