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1 -rw-r--r--···0········0········0········4·2025-05-14·01:00:25.000000·debian-binary1 -rw-r--r--···0········0········0········4·2025-05-14·01:00:25.000000·debian-binary
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2025.2-13 Version:·2025.2-1
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3292826 Installed-Size:·329286
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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74 </div><!--·top·-->74 </div><!--·top·-->
75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3960"·height="1712"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3795"·height="1630"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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134 ····['makeupdategroupingspermoleculetype_98',·['makeupdategroupingspermoleculetype',·['../namespacegmx.xhtml#aa51b331e6dc5454e57b96838b2d503af',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_moltype_t·&amp;moltype,·gmx::ArrayRef&lt;·const·t_iparams·&gt;·iparams)'],134 ····['makeupdategroupingspermoleculetype_98',·['makeupdategroupingspermoleculetype',·['../namespacegmx.xhtml#aa51b331e6dc5454e57b96838b2d503af',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_moltype_t·&amp;moltype,·gmx::ArrayRef&lt;·const·t_iparams·&gt;·iparams)'],
135 ········['../namespacegmx.xhtml#a716fe4766d0dbb653552d9287feb563f',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_mtop_t·&amp;mtop)']135 ········['../namespacegmx.xhtml#a716fe4766d0dbb653552d9287feb563f',·1,·'gmx::makeUpdateGroupingsPerMoleculeType(const·gmx_mtop_t·&amp;mtop)']
136 ····]],136 ····]],
137 ····['makeupdategroups_99',·['makeUpdateGroups',·['../namespacegmx.xhtml#a2dc1261c727390c49373b57c3581f1af',·1,·'gmx']]],137 ····['makeupdategroups_99',·['makeUpdateGroups',·['../namespacegmx.xhtml#a2dc1261c727390c49373b57c3581f1af',·1,·'gmx']]],
138 ····['makevendorflavorchoice_100',·['makeVendorFlavorChoice',·['../ocl__compiler_8cpp.xhtml#ab7da5ff7c4af27a4a1789dbd342a8966',·1,·'gmx::ocl']]],138 ····['makevendorflavorchoice_100',·['makeVendorFlavorChoice',·['../ocl__compiler_8cpp.xhtml#ab7da5ff7c4af27a4a1789dbd342a8966',·1,·'gmx::ocl']]],
139 ····['makevirtualsiteshandler_101',·['makeVirtualSitesHandler',·['../namespacegmx.xhtml#ad59dd2687a751a26481a0a774f51146a',·1,·'gmx']]],139 ····['makevirtualsiteshandler_101',·['makeVirtualSitesHandler',·['../namespacegmx.xhtml#ad59dd2687a751a26481a0a774f51146a',·1,·'gmx']]],
140 ····['malloc_102',·['malloc',·['../classgmx_1_1HostAllocationPolicy.xhtml#abea041287228e8b33c288bd9b3713b6c',·1,·'gmx::HostAllocationPolicy::malloc()'], 
141 ········['../classgmx_1_1AlignedAllocationPolicy.xhtml#ae8815b9093593a20638c4071395a1ca6',·1,·'gmx::AlignedAllocationPolicy::malloc()'],140 ····['malloc_102',·['malloc',·['../classgmx_1_1AlignedAllocationPolicy.xhtml#ae8815b9093593a20638c4071395a1ca6',·1,·'gmx::AlignedAllocationPolicy::malloc()'],
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142 ········['../classgmx_1_1PageAlignedAllocationPolicy.xhtml#aefa29138219cff2f879abf3e92d2aa20',·1,·'gmx::PageAlignedAllocationPolicy::malloc()']142 ········['../classgmx_1_1PageAlignedAllocationPolicy.xhtml#aefa29138219cff2f879abf3e92d2aa20',·1,·'gmx::PageAlignedAllocationPolicy::malloc()']
143 ····]],143 ····]],
144 ····['mallocimpl_103',·['mallocImpl',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#a824a99e0446104045db4c13ac052f953',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],144 ····['mallocimpl_103',·['mallocImpl',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#a824a99e0446104045db4c13ac052f953',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]],
145 ····['manage_5fthreading_2ecpp_104',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],145 ····['manage_5fthreading_2ecpp_104',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],
146 ····['manage_5fthreading_2eh_105',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],146 ····['manage_5fthreading_2eh_105',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],
147 ····['managedevelopmentfeatures_106',·['manageDevelopmentFeatures',·['../namespacegmx.xhtml#a9ae13beb245adcba7f37c004bff11c41',·1,·'gmx']]],147 ····['managedevelopmentfeatures_106',·['manageDevelopmentFeatures',·['../namespacegmx.xhtml#a9ae13beb245adcba7f37c004bff11c41',·1,·'gmx']]],
148 ····['managegeneratedoutputfile_107',·['manageGeneratedOutputFile',·['../classgmx_1_1test_1_1TestFileManager.xhtml#af0ffc0ec6e12b37178c20f775d58c10f',·1,·'gmx::test::TestFileManager']]],148 ····['managegeneratedoutputfile_107',·['manageGeneratedOutputFile',·['../classgmx_1_1test_1_1TestFileManager.xhtml#af0ffc0ec6e12b37178c20f775d58c10f',·1,·'gmx::test::TestFileManager']]],
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237 ········['../structgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MoleculeData.xhtml#a905e6d6ed76e407661419ade98690710',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData::mass'],237 ········['../structgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MoleculeData.xhtml#a905e6d6ed76e407661419ade98690710',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData::mass'],
238 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()']238 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()']
239 ····]],239 ····]],
240 ····['masses_151',·['masses',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a2996520d03806582978001bd420e8787',·1,·'gmx::SelectionTopologyProperties::masses()'],240 ····['masses_151',·['masses',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a2996520d03806582978001bd420e8787',·1,·'gmx::SelectionTopologyProperties::masses()'],
241 ········['../classgmx_1_1Selection.xhtml#aca468745670b88b10b2adcce026ae259',·1,·'gmx::Selection::masses()']241 ········['../classgmx_1_1Selection.xhtml#aca468745670b88b10b2adcce026ae259',·1,·'gmx::Selection::masses()']
242 ····]],242 ····]],
243 ····['match_152',·['match',·['../structBondedInteraction.xhtml#a7c2a0f65b8629737b28b2ec2891f0d00',·1,·'BondedInteraction::match'], 
244 ········['../classanonymous__namespace_02sm__keywords_8cpp_03_1_1StringKeywordMatchItem.xhtml#a6f1a3d7a7873a1846048563c1faac40d',·1,·'anonymous_namespace{sm_keywords.cpp}::StringKeywordMatchItem::match()']243 ····['match_152',·['match',·['../classanonymous__namespace_02sm__keywords_8cpp_03_1_1StringKeywordMatchItem.xhtml#a6f1a3d7a7873a1846048563c1faac40d',·1,·'anonymous_namespace{sm_keywords.cpp}::StringKeywordMatchItem::match()'],
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245 ····]],245 ····]],
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246 ····['matchandexplain_153',·['matchandexplain',·['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a10d67b5a0da6c21ae1e1df339000be52',·1,·'gmx::test::FloatTypeMatcher::MatchAndExplain()'],247 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a10d67b5a0da6c21ae1e1df339000be52',·1,·'gmx::test::FloatTypeMatcher::MatchAndExplain()']
247 ········['../classgmx_1_1test_1_1RVecMatcher.xhtml#a2ae2928ffa1a58e85a278ed34b7c906c',·1,·'gmx::test::RVecMatcher::MatchAndExplain()'] 
248 ····]],248 ····]],
249 ····['matcher_154',·['matcher',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a149880d95897d2e01cc9ed66688a67c7',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],249 ····['matcher_154',·['matcher',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a149880d95897d2e01cc9ed66688a67c7',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],
250 ····['matches_155',·['matches',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#a48e93adae942c05a1cb87c10c8477345',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],250 ····['matches_155',·['matches',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#a48e93adae942c05a1cb87c10c8477345',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],
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252 ····['matchtype_157',·['matchType',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#ae70c598952362cd86ea5a0ec0cfe9cf2',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],252 ····['matchtype_157',·['matchType',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#ae70c598952362cd86ea5a0ec0cfe9cf2',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],
253 ····['math_20library_158',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],253 ····['math_20library_158',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
254 ····['matio_2ecpp_159',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],254 ····['matio_2ecpp_159',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],
255 ····['matlam_160',·['matlam',·['../classgmx_1_1Lincs.xhtml#a3da2ad9c2aa9800de6a5a83868e90d92',·1,·'gmx::Lincs']]],255 ····['matlam_160',·['matlam',·['../classgmx_1_1Lincs.xhtml#a3da2ad9c2aa9800de6a5a83868e90d92',·1,·'gmx::Lincs']]],
256 ····['matrix_161',·['matrix',·['../structt__matrix.xhtml#a1a09d637a51e9e5b526ae840a182d9ee',·1,·'t_matrix']]],256 ····['matrix_161',·['matrix',·['../structt__matrix.xhtml#a1a09d637a51e9e5b526ae840a182d9ee',·1,·'t_matrix']]],
257 ····['matrix_2ecpp_162',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],257 ····['matrix_2ecpp_162',·['matrix.cpp',·['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],
258 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']258 ········['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']
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261 ····['matrix3x3_164',·['matrix3x3',·['../namespacegmx.xhtml#a8065c9cfb460c40c3c2699c728ecd3f4',·1,·'gmx::Matrix3x3'], 
262 ········['../namespacegmx_1_1test.xhtml#abe16d8d44b085b584568a1f5b2e57f2f',·1,·'gmx::test::Matrix3x3']261 ····['matrix3x3_164',·['matrix3x3',·['../namespacegmx_1_1test.xhtml#abe16d8d44b085b584568a1f5b2e57f2f',·1,·'gmx::test::Matrix3x3'],
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265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],
266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],
268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],
269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],
270 ····['max_171',·['max',·['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max()'], 
271 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'], 
272 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'], 
273 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],270 ····['max_171',·['max',·['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],
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276 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],273 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],
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279 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'], 
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281 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'], 
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 279 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'],
 280 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'],
283 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],281 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],
 282 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],
284 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)']283 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],
 284 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)']
285 ····]],285 ····]],
286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],
287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],
288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],
289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp'],289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp'],
290 ········['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2']290 ········['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2']
291 ····]],291 ····]],
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725 ····['moleculeinformation_444',·['MoleculeInformation',·['../structMoleculeInformation.xhtml',·1,·'']]],725 ····['moleculeinformation_444',·['MoleculeInformation',·['../structMoleculeInformation.xhtml',·1,·'']]],
726 ····['moleculepatch_445',·['MoleculePatch',·['../structMoleculePatch.xhtml',·1,·'']]],726 ····['moleculepatch_445',·['MoleculePatch',·['../structMoleculePatch.xhtml',·1,·'']]],
727 ····['moleculepatchdatabase_446',·['MoleculePatchDatabase',·['../structMoleculePatchDatabase.xhtml',·1,·'']]],727 ····['moleculepatchdatabase_446',·['MoleculePatchDatabase',·['../structMoleculePatchDatabase.xhtml',·1,·'']]],
728 ····['moleculepatchtype_447',·['MoleculePatchType',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016',·1,·'hackblock.h']]],728 ····['moleculepatchtype_447',·['MoleculePatchType',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016',·1,·'hackblock.h']]],
729 ····['moleculesarewhole_448',·['MoleculesAreWhole',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9af6ea0d2701a81eb19f537c7c982b2fd8',·1,·'gmx']]],729 ····['moleculesarewhole_448',·['MoleculesAreWhole',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9af6ea0d2701a81eb19f537c7c982b2fd8',·1,·'gmx']]],
730 ····['moleculetype_449',·['moleculetype',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mshift_8cpp_03.xhtml#ae9b5b921bcb8dd2b97cc0d6a14741216',·1,·'gmx::test::anonymous_namespace{mshift.cpp}::moleculeType()'],730 ····['moleculetype_449',·['moleculetype',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mshift_8cpp_03.xhtml#ae9b5b921bcb8dd2b97cc0d6a14741216',·1,·'gmx::test::anonymous_namespace{mshift.cpp}::moleculeType()'],
731 ········['../structAtomInMolblock.xhtml#adbd0c382ef27b472f0ad350a0142c809',·1,·'AtomInMolblock::moleculeType'],731 ········['../structAtomInMolblock.xhtml#adbd0c382ef27b472f0ad350a0142c809',·1,·'AtomInMolblock::moleculeType'],
732 ········['../structMoleculeType.xhtml',·1,·'MoleculeType'],732 ········['../structMolecularTopologyAtomIndices.xhtml#ac033337827f14c4585e4b1ae9eb272e3',·1,·'MolecularTopologyAtomIndices::moleculeType'],
733 ········['../classAtomProxy.xhtml#a82511a69b9b329f73b3ecaa77c7e5df0',·1,·'AtomProxy::moleculeType()'],733 ········['../classAtomProxy.xhtml#a82511a69b9b329f73b3ecaa77c7e5df0',·1,·'AtomProxy::moleculeType()'],
734 ········['../structMolecularTopologyAtomIndices.xhtml#ac033337827f14c4585e4b1ae9eb272e3',·1,·'MolecularTopologyAtomIndices::moleculeType']734 ········['../structMoleculeType.xhtml',·1,·'MoleculeType']
735 ····]],735 ····]],
736 ····['molname_450',·['molname',·['../structswap__group.xhtml#a1133a26ad7fa6ffc6614b1a50127f47d',·1,·'swap_group']]],736 ····['molname_450',·['molname',·['../structswap__group.xhtml#a1133a26ad7fa6ffc6614b1a50127f47d',·1,·'swap_group']]],
737 ····['mols_451',·['mols',·['../structMoleculeInformation.xhtml#a945c507ad8f991d11901cb3fcce96487',·1,·'MoleculeInformation::mols'], 
738 ········['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab3aac1e190ed353a1e717fa5fa60b61a',·1,·'gmx::ImdSession::Impl::mols']737 ····['mols_451',·['mols',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab3aac1e190ed353a1e717fa5fa60b61a',·1,·'gmx::ImdSession::Impl::mols'],
 738 ········['../structMoleculeInformation.xhtml#a945c507ad8f991d11901cb3fcce96487',·1,·'MoleculeInformation::mols']
739 ····]],739 ····]],
740 ····['moltypehasvsite_452',·['moltypeHasVsite',·['../computemultibodycutoffs_8cpp.xhtml#a7759c5f444a2540620bd7aed6b99577a',·1,·'computemultibodycutoffs.cpp']]],740 ····['moltypehasvsite_452',·['moltypeHasVsite',·['../computemultibodycutoffs_8cpp.xhtml#a7759c5f444a2540620bd7aed6b99577a',·1,·'computemultibodycutoffs.cpp']]],
741 ····['momentum_453',·['momentum',·['../structSystemMomentum.xhtml#a12a78f8e5157ad1e319366a2e4bebc1c',·1,·'SystemMomentum']]],741 ····['momentum_453',·['momentum',·['../structSystemMomentum.xhtml#a12a78f8e5157ad1e319366a2e4bebc1c',·1,·'SystemMomentum']]],
742 ····['momentumfullstep_454',·['momentumFullStep',·['../structSystemMomenta.xhtml#ab8b254f7b2e18c4c7377bf444edad356',·1,·'SystemMomenta']]],742 ····['momentumfullstep_454',·['momentumFullStep',·['../structSystemMomenta.xhtml#ab8b254f7b2e18c4c7377bf444edad356',·1,·'SystemMomenta']]],
743 ····['momentumhalfstep_455',·['momentumHalfStep',·['../structSystemMomenta.xhtml#aa8d185ac5f2bc0357cb2065c31ebaa25',·1,·'SystemMomenta']]],743 ····['momentumhalfstep_455',·['momentumHalfStep',·['../structSystemMomenta.xhtml#aa8d185ac5f2bc0357cb2065c31ebaa25',·1,·'SystemMomenta']]],
744 ····['momentumoldhalfstep_456',·['momentumOldHalfStep',·['../structSystemMomenta.xhtml#af9444ab09b89450b547c049d37cf052e',·1,·'SystemMomenta']]],744 ····['momentumoldhalfstep_456',·['momentumOldHalfStep',·['../structSystemMomenta.xhtml#af9444ab09b89450b547c049d37cf052e',·1,·'SystemMomenta']]],
745 ····['mon_457',·['mon',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edvecs.xhtml#a09f4fe90ebb817228b3fb0824e790530',·1,·'anonymous_namespace{edsam.cpp}::t_edvecs']]],745 ····['mon_457',·['mon',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edvecs.xhtml#a09f4fe90ebb817228b3fb0824e790530',·1,·'anonymous_namespace{edsam.cpp}::t_edvecs']]],
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763 ····['mpicommall_475',·['mpicommall',·['../classgmx_1_1DomainCommForward.xhtml#acca96094d4f43e2ae83ec208f1b99e88',·1,·'gmx::DomainCommForward::mpiCommAll()'],763 ····['mpicommall_475',·['mpicommall',·['../classgmx_1_1DomainCommForward.xhtml#acca96094d4f43e2ae83ec208f1b99e88',·1,·'gmx::DomainCommForward::mpiCommAll()'],
764 ········['../classgmx_1_1DomainCommBackward.xhtml#ac550edb7920c56ccd8caf801c68cb054',·1,·'gmx::DomainCommBackward::mpiCommAll()']764 ········['../classgmx_1_1DomainCommBackward.xhtml#ac550edb7920c56ccd8caf801c68cb054',·1,·'gmx::DomainCommBackward::mpiCommAll()']
765 ····]],765 ····]],
766 ····['mpicommx_476',·['mpiCommX',·['../structPmeShared.xhtml#a4a18c130ef148fbaca140a4a47411227',·1,·'PmeShared']]],766 ····['mpicommx_476',·['mpiCommX',·['../structPmeShared.xhtml#a4a18c130ef148fbaca140a4a47411227',·1,·'PmeShared']]],
767 ····['mpicommy_477',·['mpiCommY',·['../structPmeShared.xhtml#ad622e2d0e19fc94d173231cd03e72afe',·1,·'PmeShared']]],767 ····['mpicommy_477',·['mpiCommY',·['../structPmeShared.xhtml#ad622e2d0e19fc94d173231cd03e72afe',·1,·'PmeShared']]],
768 ····['mpilibraryversionstring_478',·['mpiLibraryVersionString',·['../namespacegmx.xhtml#a49c75db6d97651626c88f9f23f4bffaa',·1,·'gmx']]],768 ····['mpilibraryversionstring_478',·['mpiLibraryVersionString',·['../namespacegmx.xhtml#a49c75db6d97651626c88f9f23f4bffaa',·1,·'gmx']]],
769 ····['mpisetupvalid_479',·['mpiSetupValid',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#aed91522d2a8bd6ddc44d716a07ed6a07',·1,·'gmx::test::MultiSimTest']]],769 ····['mpisetupvalid_479',·['mpiSetupValid',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#aed91522d2a8bd6ddc44d716a07ed6a07',·1,·'gmx::test::MultiSimTest']]],
770 ····['mpitest_2ecpp_480',·['mpitest.cpp',·['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],770 ····['mpitest_2ecpp_480',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
771 ········['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']771 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
772 ····]],772 ····]],
773 ····['mpitest_2eh_481',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],773 ····['mpitest_2eh_481',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
774 ····['mpiwaitall_482',·['mpiWaitall',·['../namespacegmx_1_1anonymous__namespace_02haloexchange_8cpp_03.xhtml#a6cc9ed97595c08f467311956380390ad',·1,·'gmx::anonymous_namespace{haloexchange.cpp}']]],774 ····['mpiwaitall_482',·['mpiWaitall',·['../namespacegmx_1_1anonymous__namespace_02haloexchange_8cpp_03.xhtml#a6cc9ed97595c08f467311956380390ad',·1,·'gmx::anonymous_namespace{haloexchange.cpp}']]],
775 ····['mrcdatamode_483',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],775 ····['mrcdatamode_483',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],
776 ····['mrcdatastatistics_484',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],776 ····['mrcdatastatistics_484',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],
777 ····['mrcdensitymap_2ecpp_485',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],777 ····['mrcdensitymap_2ecpp_485',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
778 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']778 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
779 ····]],779 ····]],
780 ····['mrcdensitymap_2eh_486',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],780 ····['mrcdensitymap_2eh_486',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
781 ····['mrcdensitymapheader_487',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],781 ····['mrcdensitymapheader_487',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],
782 ····['mrcdensitymapheader_2ecpp_488',·['mrcdensitymapheader.cpp',·['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],782 ····['mrcdensitymapheader_2ecpp_488',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
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335 ····['newhistogramsize_222',·['newHistogramSize',·['../classgmx_1_1HistogramSize.xhtml#a0841126e946757a56510a5412548efa3',·1,·'gmx::HistogramSize']]],335 ····['newhistogramsize_222',·['newHistogramSize',·['../classgmx_1_1HistogramSize.xhtml#a0841126e946757a56510a5412548efa3',·1,·'gmx::HistogramSize']]],
336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],
337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],
338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],
339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],
340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],
341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],
 342 ····['next_229',·['next',·['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'],
342 ····['next_229',·['next',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],
343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],344 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],
344 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],345 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],
345 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],346 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],
346 ········['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'], 
347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']
348 ····]],348 ····]],
349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],
350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']
351 ····]],351 ····]],
352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],
353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],
Offset 365, 28 lines modifiedOffset 365, 28 lines modified
365 ····['nfile_244',·['NFILE',·['../gmx__wham_8cpp.xhtml#a8485f4e81de2537e6a0935626167a775',·1,·'gmx_wham.cpp']]],365 ····['nfile_244',·['NFILE',·['../gmx__wham_8cpp.xhtml#a8485f4e81de2537e6a0935626167a775',·1,·'gmx_wham.cpp']]],
366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],
367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],
368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],
369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],
370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],
371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],
372 ····['ngtc_251',·['ngtc',·['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc'],372 ····['ngtc_251',·['ngtc',·['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc'],
373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],
374 ········['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc']374 ········['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc']
375 ····]],375 ····]],
376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],
377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],
378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']
379 ····]],379 ····]],
380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],
 381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi'],
381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi'],382 ········['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi']
382 ········['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi'] 
383 ····]],383 ····]],
384 ····['nhpres_5fxi_256',·['nhpres_xi',·['../classt__state.xhtml#aad70ff9fb16e28b424c2b817618409d0',·1,·'t_state::nhpres_xi'], 
385 ········['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi']384 ····['nhpres_5fxi_256',·['nhpres_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi'],
 385 ········['../classt__state.xhtml#aad70ff9fb16e28b424c2b817618409d0',·1,·'t_state::nhpres_xi']
386 ····]],386 ····]],
387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],
388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],
389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],
390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],
Offset 408, 29 lines modifiedOffset 408, 29 lines modified
408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],
409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],
410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],
411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],
413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],
414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],
415 ····['nnhpres_279',·['nnhpres',·['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres'], 
416 ········['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres']415 ····['nnhpres_279',·['nnhpres',·['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres'],
 416 ········['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres']
417 ····]],417 ····]],
418 ····['nnodes_280',·['nnodes',·['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes'], 
419 ········['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes']418 ····['nnodes_280',·['nnodes',·['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes'],
 419 ········['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes']
420 ····]],420 ····]],
421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],
422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],
423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
424 ········['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']424 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
425 ····]],425 ····]],
426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
427 ····['nnpotforceprovider_285',·['NNPotForceProvider',·['../classgmx_1_1NNPotForceProvider.xhtml',·1,·'gmx']]],427 ····['nnpotforceprovider_285',·['NNPotForceProvider',·['../classgmx_1_1NNPotForceProvider.xhtml',·1,·'gmx']]],
428 ····['nnpotforceprovider_2ecpp_286',·['nnpotforceprovider.cpp',·['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],428 ····['nnpotforceprovider_2ecpp_286',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
429 ········['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']429 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
430 ····]],430 ····]],
431 ····['nnpotforceprovider_2eh_287',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],431 ····['nnpotforceprovider_2eh_287',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
432 ····['nnpotforceprovider_5fstub_2ecpp_288',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],432 ····['nnpotforceprovider_5fstub_2ecpp_288',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
433 ····['nnpotmdmodule_289',·['NNPotMDModule',·['../classgmx_1_1anonymous__namespace_02nnpot_8cpp_03_1_1NNPotMDModule.xhtml',·1,·'gmx::anonymous_namespace{nnpot.cpp}']]],433 ····['nnpotmdmodule_289',·['NNPotMDModule',·['../classgmx_1_1anonymous__namespace_02nnpot_8cpp_03_1_1NNPotMDModule.xhtml',·1,·'gmx::anonymous_namespace{nnpot.cpp}']]],
434 ····['nnpotmdptransformfromstring_290',·['NNPotMdpTransformFromString',·['../namespacegmx.xhtml#a965719fa61deaf0dcfcf8903463e243d',·1,·'gmx']]],434 ····['nnpotmdptransformfromstring_290',·['NNPotMdpTransformFromString',·['../namespacegmx.xhtml#a965719fa61deaf0dcfcf8903463e243d',·1,·'gmx']]],
435 ····['nnpotmodel_2eh_291',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],435 ····['nnpotmodel_2eh_291',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],
436 ····['nnpotmoduleinfo_292',·['NNPotModuleInfo',·['../structgmx_1_1NNPotModuleInfo.xhtml',·1,·'gmx']]],436 ····['nnpotmoduleinfo_292',·['NNPotModuleInfo',·['../structgmx_1_1NNPotModuleInfo.xhtml',·1,·'gmx']]],
Offset 438, 32 lines modifiedOffset 438, 32 lines modified
438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
439 ····]],439 ····]],
440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],
442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],
443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']
444 ····]],444 ····]],
445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
446 ········['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']446 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
447 ····]],447 ····]],
448 ····['nnpottopologypreprocessor_2eh_298',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],448 ····['nnpottopologypreprocessor_2eh_298',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],
449 ····['nnpottopologypreprocessortest_299',·['NNPotTopologyPreprocessorTest',·['../classgmx_1_1test_1_1NNPotTopologyPreprocessorTest.xhtml',·1,·'gmx::test']]],449 ····['nnpottopologypreprocessortest_299',·['NNPotTopologyPreprocessorTest',·['../classgmx_1_1test_1_1NNPotTopologyPreprocessorTest.xhtml',·1,·'gmx::test']]],
450 ····['nnstl_300',·['NNSTL',·['../pairlist__tuning_8cpp.xhtml#aa7bb25f96f0e989b4b7c45d407a1b63c',·1,·'pairlist_tuning.cpp']]],450 ····['nnstl_300',·['NNSTL',·['../pairlist__tuning_8cpp.xhtml#aa7bb25f96f0e989b4b7c45d407a1b63c',·1,·'pairlist_tuning.cpp']]],
 451 ····['no_301',·['no',·['../md__enums_8h.xhtml#a07be3f2d86a9b6337ff8c4853a0fb8b8abafd7322c6e97d25b6299b5d6fe8920b',·1,·'No:&#160;md_enums.h'],
 452 ········['../dlbtiming_8h.xhtml#a4c394e83d3a1d89ac14e90553e54dff4a7fa3b767c460b54a2be4d49030b349c7',·1,·'no:&#160;dlbtiming.h'],
 453 ········['../dlbtiming_8h.xhtml#a187697058dfa34f355e4ee2e8fcf1dc1a7fa3b767c460b54a2be4d49030b349c7',·1,·'no:&#160;dlbtiming.h'],
 454 ········['../namespacegmx.xhtml#af2ca01657023e02580baaaf0c011a60ca7fa3b767c460b54a2be4d49030b349c7',·1,·'gmx::no'],
 455 ········['../namespacegmx.xhtml#a65a4da1c9de2e9bed752f8b8a3f9f536abafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],
451 ····['no_301',·['no',·['../group__module__modularsimulator.xhtml#gga5c5a9708579f420d64688aaea88c2885abafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],456 ········['../group__module__modularsimulator.xhtml#gga5c5a9708579f420d64688aaea88c2885abafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],
452 ········['../namespacegmx.xhtml#ab1684f724061fbe3bfdd1efde3e715e7abafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],457 ········['../namespacegmx.xhtml#ab1684f724061fbe3bfdd1efde3e715e7abafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],
453 ········['../namespacegmx.xhtml#abb4f062823c006fc233c4b4bcb0119ecabafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],458 ········['../namespacegmx.xhtml#abb4f062823c006fc233c4b4bcb0119ecabafd7322c6e97d25b6299b5d6fe8920b',·1,·'gmx::No'],
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477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
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457 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|()'], 
458 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'], 
459 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)']458 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)'],
 459 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|(const·FlagsTemplate&lt;·FlagType·&gt;·&amp;other)·const']
460 ····]],460 ····]],
461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],
462 ····['operator_7c_7c_137',·['operator||',·['../group__module__simd.xhtml#gab7b197309edc60323a129fa9620a7400',·1,·'gmx::operator||(SimdFIBool·a,·SimdFIBool·b)'], 
463 ········['../group__module__simd.xhtml#ga5d5483d15fe15e3c3eaf1e4e90e53f90',·1,·'gmx::operator||(Simd4DBool·a,·Simd4DBool·b)'],462 ····['operator_7c_7c_137',·['operator||',·['../group__module__simd.xhtml#ga5d5483d15fe15e3c3eaf1e4e90e53f90',·1,·'gmx::operator||(Simd4DBool·a,·Simd4DBool·b)'],
464 ········['../group__module__simd.xhtml#gaf2ab4b4f3d3e7f6e9a012df64c1d9f3c',·1,·'gmx::operator||(Simd4FBool·a,·Simd4FBool·b)'],463 ········['../group__module__simd.xhtml#gaf2ab4b4f3d3e7f6e9a012df64c1d9f3c',·1,·'gmx::operator||(Simd4FBool·a,·Simd4FBool·b)'],
465 ········['../group__module__simd.xhtml#gad1da27c5bc4fd40afe78810c7b6e0730',·1,·'gmx::operator||(SimdDBool·a,·SimdDBool·b)'],464 ········['../group__module__simd.xhtml#gad1da27c5bc4fd40afe78810c7b6e0730',·1,·'gmx::operator||(SimdDBool·a,·SimdDBool·b)'],
466 ········['../group__module__simd.xhtml#ga2382ca9a262a0503bb5dcfcec09df671',·1,·'gmx::operator||(SimdDIBool·a,·SimdDIBool·b)'],465 ········['../group__module__simd.xhtml#ga2382ca9a262a0503bb5dcfcec09df671',·1,·'gmx::operator||(SimdDIBool·a,·SimdDIBool·b)'],
467 ········['../group__module__simd.xhtml#ga5595db8a2c813f0ae078285a1b6b8bd3',·1,·'gmx::operator||(SimdFBool·a,·SimdFBool·b)']466 ········['../group__module__simd.xhtml#ga5595db8a2c813f0ae078285a1b6b8bd3',·1,·'gmx::operator||(SimdFBool·a,·SimdFBool·b)'],
 467 ········['../group__module__simd.xhtml#gab7b197309edc60323a129fa9620a7400',·1,·'gmx::operator||(SimdFIBool·a,·SimdFIBool·b)']
468 ····]],468 ····]],
469 ····['operator_7e_138',·['operator~',·['../classgmx_1_1FlagsTemplate.xhtml#a38267207d85020c70e257cd26f526077',·1,·'gmx::FlagsTemplate']]],469 ····['operator_7e_138',·['operator~',·['../classgmx_1_1FlagsTemplate.xhtml#a38267207d85020c70e257cd26f526077',·1,·'gmx::FlagsTemplate']]],
470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],
471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],
472 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']472 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']
473 ····]],473 ····]],
474 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],474 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],
Offset 510, 74 lines modifiedOffset 510, 74 lines modified
510 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']510 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']
511 ····]],511 ····]],
512 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],512 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],
513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],
514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],
515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],
516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],
517 ····['option_160',·['option',·['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],517 ····['option_160',·['option',·['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'],
518 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],518 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],
519 ········['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const']519 ········['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option']
520 ····]],520 ····]],
521 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],521 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],
522 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],522 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],
523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],
524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],
525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],
526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],
527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],
528 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],528 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'],
529 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],529 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],
530 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],530 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],
531 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],531 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],
532 ········['../classgmx_1_1test_1_1anonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a7d87e123198297afec33a2f9e047afea',·1,·'gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],532 ········['../classgmx_1_1test_1_1anonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a7d87e123198297afec33a2f9e047afea',·1,·'gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],
533 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],533 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],
534 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],534 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],
 535 ········['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],
535 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],536 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],
536 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],537 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],
537 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],538 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],
538 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],539 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],
539 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],540 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],
540 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'],541 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()']
541 ········['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'] 
542 ····]],542 ····]],
543 ····['optionlist_169',·['optionlist',·['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList'], 
544 ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList']543 ····['optionlist_169',·['optionlist',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList'],
 544 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList']
545 ····]],545 ····]],
546 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],546 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],
547 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],547 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],
548 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],548 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],
549 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],549 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],
550 ····['options_174',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],550 ····['options_174',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],
551 ········['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],551 ········['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],
552 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],552 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],
553 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()'],553 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()'],
554 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'],554 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()'],
555 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],555 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],
556 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()']556 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options']
557 ····]],557 ····]],
558 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],558 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],
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26 ····['paddedconstarrayref_16',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],26 ····['paddedconstarrayref_16',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],
27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],
28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']
29 ····]],29 ····]],
30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],
31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],
32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],
33 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'], 
34 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],33 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],
35 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],34 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],
 35 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'],
36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],
 37 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'],
37 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],38 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],
38 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'], 
39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']
40 ····]],40 ····]],
41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
46 ····['paddedvectortest_26',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],46 ····['paddedvectortest_26',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],
47 ····['padding_27',·['padding',·['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a74a1c9cb3020fc75e8a7afe9c7047d7b',·1,·'gmx::BoundingBox::Corner']]],47 ····['padding_27',·['padding',·['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a74a1c9cb3020fc75e8a7afe9c7047d7b',·1,·'gmx::BoundingBox::Corner']]],
48 ····['paddingtraits_28',·['PaddingTraits',·['../structgmx_1_1detail_1_1PaddingTraits.xhtml',·1,·'gmx::detail']]],48 ····['paddingtraits_28',·['PaddingTraits',·['../structgmx_1_1detail_1_1PaddingTraits.xhtml',·1,·'gmx::detail']]],
49 ····['pagealignedallocationpolicy_29',·['PageAlignedAllocationPolicy',·['../classgmx_1_1PageAlignedAllocationPolicy.xhtml',·1,·'gmx']]],49 ····['pagealignedallocationpolicy_29',·['PageAlignedAllocationPolicy',·['../classgmx_1_1PageAlignedAllocationPolicy.xhtml',·1,·'gmx']]],
50 ····['pagealignedallocator_30',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],50 ····['pagealignedallocator_30',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],
51 ····['pagesize_31',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],51 ····['pagesize_31',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],
 52 ····['pair_32',·['pair',·['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair'],
52 ····['pair_32',·['pair',·['../structgmx_1_1anonymous__namespace_02domainpaircomm_8cpp_03_1_1DistancesSquared.xhtml#af1e781c15cbc8b00f520c621ef583b1a',·1,·'gmx::anonymous_namespace{domainpaircomm.cpp}::DistancesSquared::pair'],53 ········['../structgmx_1_1anonymous__namespace_02domainpaircomm_8cpp_03_1_1DistancesSquared.xhtml#af1e781c15cbc8b00f520c621ef583b1a',·1,·'gmx::anonymous_namespace{domainpaircomm.cpp}::DistancesSquared::pair'],
53 ········['../structgmx_1_1nbnxn__excl__t.xhtml#a6a392653c71a1a8e133e2855d5cab556',·1,·'gmx::nbnxn_excl_t::pair'],54 ········['../structgmx_1_1nbnxn__excl__t.xhtml#a6a392653c71a1a8e133e2855d5cab556',·1,·'gmx::nbnxn_excl_t::pair']
54 ········['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair'] 
55 ····]],55 ····]],
56 ····['pair_20interactions_33',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],56 ····['pair_20interactions_33',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],
57 ····['paircountwithincutoff_34',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],57 ····['paircountwithincutoff_34',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],
58 ····['pairdist_2ecpp_35',·['pairdist.cpp',·['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],58 ····['pairdist_2ecpp_35',·['pairdist.cpp',·['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],
59 ········['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']59 ········['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']
60 ····]],60 ····]],
61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],
63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],
64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']
65 ····]],65 ····]],
66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],
Offset 68, 49 lines modifiedOffset 68, 49 lines modified
68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],
69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],
70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],
71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],
72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],
73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],
75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff'], 
76 ········['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff']75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff'],
 76 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff']
77 ····]],77 ····]],
78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],
79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],
80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],
 81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'],
81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()'],82 ········['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()']
82 ········['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'] 
83 ····]],83 ····]],
84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],
85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],
86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'], 
87 ········['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],
88 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()']87 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()'],
 88 ········['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet']
89 ····]],89 ····]],
90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],
91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
 92 ····['pairlistsets_58',·['pairlistsets',·['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets'],
92 ····['pairlistsets_58',·['pairlistsets',·['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],93 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],
93 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()'],94 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()']
94 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets'] 
95 ····]],95 ····]],
96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
 97 ····['pairlisttype_60',·['pairlisttype',·['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType'],
97 ····['pairlisttype_60',·['pairlisttype',·['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType'],98 ········['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType']
98 ········['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType'] 
99 ····]],99 ····]],
100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],
101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],
102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],
103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],
104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],
105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']
106 ····]],106 ····]],
107 ····['pairs_2eh_66',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],107 ····['pairs_2eh_66',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],
 108 ····['pairsearch_67',·['pairsearch',·['../classgmx_1_1PairSearch.xhtml',·1,·'gmx::PairSearch'],
108 ····['pairsearch_67',·['pairsearch',·['../classgmx_1_1PairSearch.xhtml#ac9f08e8fa6d40c6761e97e8b2839e23e',·1,·'gmx::PairSearch::PairSearch()'],109 ········['../classgmx_1_1PairSearch.xhtml#ac9f08e8fa6d40c6761e97e8b2839e23e',·1,·'gmx::PairSearch::PairSearch()']
109 ········['../classgmx_1_1PairSearch.xhtml',·1,·'gmx::PairSearch'] 
110 ····]],110 ····]],
111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],
112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],
113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],
115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],
116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],
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128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],
130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],
132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],
133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],
134 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],134 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],
135 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'], 
136 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],135 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],
137 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],136 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],
138 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],137 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param'],
139 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],138 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],
140 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param']139 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],
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141 ····]],141 ····]],
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 144 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'],
 145 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'],
 146 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'],
 147 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'],
142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],148 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],
143 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type'],149 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],
144 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],150 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],
145 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'], 
146 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],151 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],
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24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],
26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
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31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],32 ········['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()']
32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator'] 
33 ····]],33 ····]],
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35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
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37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],
39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],
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344 ····['refids_213',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],344 ····['refids_213',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],
345 ····['refindex_214',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],345 ····['refindex_214',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
346 ····['refpairlist_215',·['RefPairList',·['../namespaceanonymous__namespace_02nbsearch_8cpp_03.xhtml#ac1da2ff320001e88dcc42758f8a3c21e',·1,·'anonymous_namespace{nbsearch.cpp}']]],346 ····['refpairlist_215',·['RefPairList',·['../namespaceanonymous__namespace_02nbsearch_8cpp_03.xhtml#ac1da2ff320001e88dcc42758f8a3c21e',·1,·'anonymous_namespace{nbsearch.cpp}']]],
347 ····['refproj_216',·['refproj',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#aa6c9c57d3dff85411b0faa930c3dcc71',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],347 ····['refproj_216',·['refproj',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#aa6c9c57d3dff85411b0faa930c3dcc71',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],
348 ····['refreshmassesandcharges_217',·['refreshMassesAndCharges',·['../classgmx_1_1internal_1_1SelectionData.xhtml#ad86105740719b15fd3c97f7badc16b5c',·1,·'gmx::internal::SelectionData']]],348 ····['refreshmassesandcharges_217',·['refreshMassesAndCharges',·['../classgmx_1_1internal_1_1SelectionData.xhtml#ad86105740719b15fd3c97f7badc16b5c',·1,·'gmx::internal::SelectionData']]],
349 ····['refreshname_218',·['refreshName',·['../classgmx_1_1internal_1_1SelectionData.xhtml#aa9b2de19d441e2bbad3f0a3d9a6aa8dd',·1,·'gmx::internal::SelectionData']]],349 ····['refreshname_218',·['refreshName',·['../classgmx_1_1internal_1_1SelectionData.xhtml#aa9b2de19d441e2bbad3f0a3d9a6aa8dd',·1,·'gmx::internal::SelectionData']]],
350 ····['register_2ecpp_219',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],350 ····['register_2ecpp_219',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
351 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']351 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
352 ····]],352 ····]],
353 ····['register_2eh_220',·['register.h',·['../register_8h.xhtml',·1,·'']]],353 ····['register_2eh_220',·['register.h',·['../register_8h.xhtml',·1,·'']]],
354 ····['register_5fexternal_5fpull_5fpotential_221',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],354 ····['register_5fexternal_5fpull_5fpotential_221',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],
355 ····['registeranalysisdataset_222',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],355 ····['registeranalysisdataset_222',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],
356 ····['registerawhwithpull_223',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],356 ····['registerawhwithpull_223',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],
357 ····['registerbasicdataset_224',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],357 ····['registerbasicdataset_224',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
358 ····['registerclient_225',·['registerclient',·['../classgmx_1_1CheckpointHelperBuilder.xhtml#a1bdeec36162c0a061c2a2079406795c3',·1,·'gmx::CheckpointHelperBuilder::registerClient()'],358 ····['registerclient_225',·['registerclient',·['../classgmx_1_1CheckpointHelperBuilder.xhtml#a1bdeec36162c0a061c2a2079406795c3',·1,·'gmx::CheckpointHelperBuilder::registerClient()'],
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499 ····['sendcoordinatestopme_324',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],499 ····['sendcoordinatestopme_324',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],
500 ····['sendcoordinatestopmefromcpu_325',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],500 ····['sendcoordinatestopmefromcpu_325',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],
501 ····['sendcoordinatestopmefromgpu_326',·['sendCoordinatesToPmeFromGpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aca9637ed98e605eb38acfb3f1db3cfc6',·1,·'gmx::PmePpCommGpu']]],501 ····['sendcoordinatestopmefromgpu_326',·['sendCoordinatesToPmeFromGpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aca9637ed98e605eb38acfb3f1db3cfc6',·1,·'gmx::PmePpCommGpu']]],
502 ····['sendenergies_327',·['sendEnergies',·['../classgmx_1_1MimicCommunicator.xhtml#ab9d1443e7599eba59af3e8866a08574e',·1,·'gmx::MimicCommunicator']]],502 ····['sendenergies_327',·['sendEnergies',·['../classgmx_1_1MimicCommunicator.xhtml#ab9d1443e7599eba59af3e8866a08574e',·1,·'gmx::MimicCommunicator']]],
503 ····['sendforces_328',·['sendForces',·['../classgmx_1_1MimicCommunicator.xhtml#a72da9bef1f60506d755bd218846035da',·1,·'gmx::MimicCommunicator']]],503 ····['sendforces_328',·['sendForces',·['../classgmx_1_1MimicCommunicator.xhtml#a72da9bef1f60506d755bd218846035da',·1,·'gmx::MimicCommunicator']]],
504 ····['sendforcesdirecttoppgpu_329',·['sendForcesDirectToPpGpu',·['../structgmx__pme__pp.xhtml#a209fc2f7867ff6901c6e8ce977f54eff',·1,·'gmx_pme_pp']]],504 ····['sendforcesdirecttoppgpu_329',·['sendForcesDirectToPpGpu',·['../structgmx__pme__pp.xhtml#a209fc2f7867ff6901c6e8ce977f54eff',·1,·'gmx_pme_pp']]],
505 ····['sendftoppgpuawarempi_330',·['sendftoppgpuawarempi',·['../classgmx_1_1PmeForceSenderGpu.xhtml#aec4535379f56724c0230d2cf84637c04',·1,·'gmx::PmeForceSenderGpu::sendFToPpGpuAwareMpi()'],505 ····['sendftoppgpuawarempi_330',·['sendftoppgpuawarempi',·['../classgmx_1_1PmeForceSenderGpu.xhtml#aec4535379f56724c0230d2cf84637c04',·1,·'gmx::PmeForceSenderGpu::sendFToPpGpuAwareMpi()'],
506 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a928876afdf2aa59e65a3f8c32bf401de',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpGpuAwareMpi()']506 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a928876afdf2aa59e65a3f8c32bf401de',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpGpuAwareMpi(DeviceBuffer&lt;·RVec·&gt;·sendbuf,·int·offset,·int·numBytes,·int·ppRank,·MPI_Request·*request)']
507 ····]],507 ····]],
508 ····['sendftopppeertopeer_331',·['sendftopppeertopeer',·['../classgmx_1_1PmeForceSenderGpu.xhtml#aae40adba2195e64f4afb246e49b869de',·1,·'gmx::PmeForceSenderGpu::sendFToPpPeerToPeer()'], 
509 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a32fa8a38e5ceef0147a72f5359dd572c',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpPeerToPeer()']508 ····['sendftopppeertopeer_331',·['sendftopppeertopeer',·['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a32fa8a38e5ceef0147a72f5359dd572c',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpPeerToPeer()'],
 509 ········['../classgmx_1_1PmeForceSenderGpu.xhtml#aae40adba2195e64f4afb246e49b869de',·1,·'gmx::PmeForceSenderGpu::sendFToPpPeerToPeer()']
510 ····]],510 ····]],
511 ····['sendinitdata_332',·['sendInitData',·['../classgmx_1_1MimicCommunicator.xhtml#a9c08a5c6effe79ce071a85ff228da148',·1,·'gmx::MimicCommunicator']]],511 ····['sendinitdata_332',·['sendInitData',·['../classgmx_1_1MimicCommunicator.xhtml#a9c08a5c6effe79ce071a85ff228da148',·1,·'gmx::MimicCommunicator']]],
512 ····['sendxbuf_333',·['sendxbuf',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8406c909832be820f0ca7940cd86990b',·1,·'gmx::ImdSession::Impl']]],512 ····['sendxbuf_333',·['sendxbuf',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8406c909832be820f0ca7940cd86990b',·1,·'gmx::ImdSession::Impl']]],
513 ····['separatedhdlfile_334',·['SeparateDhdlFile',·['../md__enums_8h.xhtml#ae8d0187ba4608fb1f8713e7e9d78c8ba',·1,·'md_enums.h']]],513 ····['separatedhdlfile_334',·['SeparateDhdlFile',·['../md__enums_8h.xhtml#ae8d0187ba4608fb1f8713e7e9d78c8ba',·1,·'md_enums.h']]],
514 ····['separatepmerankspermitted_335',·['SeparatePmeRanksPermitted',·['../classgmx_1_1SeparatePmeRanksPermitted.xhtml',·1,·'gmx']]],514 ····['separatepmerankspermitted_335',·['SeparatePmeRanksPermitted',·['../classgmx_1_1SeparatePmeRanksPermitted.xhtml',·1,·'gmx']]],
515 ····['seqindex_5f_336',·['seqIndex_',·['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#a5de7f1436e0bfefd57108e96072cf242',·1,·'gmx::test::TestReferenceChecker::Impl']]],515 ····['seqindex_5f_336',·['seqIndex_',·['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#a5de7f1436e0bfefd57108e96072cf242',·1,·'gmx::test::TestReferenceChecker::Impl']]],
516 ····['sequence_20diagrams_337',·['Sequence·diagrams',·['../page_modularsimulator.xhtml#autotoc_md15',·1,·'']]],516 ····['sequence_20diagrams_337',·['Sequence·diagrams',·['../page_modularsimulator.xhtml#autotoc_md15',·1,·'']]],
517 ····['serialize_338',·['serialize',·['../classStringTableEntry.xhtml#a247dac31349e22ce9fbd2d3bffc55391',·1,·'StringTableEntry::serialize()'],517 ····['serialize_338',·['serialize',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a50048c80aa705da4cef888a46a967798',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)'],
518 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#acf297bf2a7ec62dea44eb8b365d03ab0',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize()'],518 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#acf297bf2a7ec62dea44eb8b365d03ab0',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)'],
519 ········['../classgmx_1_1WriteCheckpointDataHolder.xhtml#a7280a156bf095d56ba0dd6603f66695c',·1,·'gmx::WriteCheckpointDataHolder::serialize()'], 
520 ········['../classgmx_1_1AwhParams.xhtml#af13d6b0b5b25414cbe239ee68ee7d77b',·1,·'gmx::AwhParams::serialize()'],519 ········['../classgmx_1_1AwhParams.xhtml#af13d6b0b5b25414cbe239ee68ee7d77b',·1,·'gmx::AwhParams::serialize()'],
521 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a50048c80aa705da4cef888a46a967798',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)']520 ········['../classgmx_1_1WriteCheckpointDataHolder.xhtml#a7280a156bf095d56ba0dd6603f66695c',·1,·'gmx::WriteCheckpointDataHolder::serialize()'],
 521 ········['../classStringTableEntry.xhtml#a247dac31349e22ce9fbd2d3bffc55391',·1,·'StringTableEntry::serialize()']
522 ····]],522 ····]],
523 ····['serializeasint32_339',·['serializeAsInt32',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a21f390715ba1be46887d59e4d0857c5d',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],523 ····['serializeasint32_339',·['serializeAsInt32',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a21f390715ba1be46887d59e4d0857c5d',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
524 ····['serializecrystallographicskewdata_340',·['serializeCrystallographicSkewData',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a03ec44827db007bff7a4b464e6f60946',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],524 ····['serializecrystallographicskewdata_340',·['serializeCrystallographicSkewData',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a03ec44827db007bff7a4b464e6f60946',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
525 ····['serializedeviceinformations_341',·['serializedeviceinformations',·['../device__management__common_8cpp.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],525 ····['serializedeviceinformations_341',·['serializedeviceinformations',·['../device__management_8h.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],
526 ········['../device__management_8h.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp']526 ········['../device__management__common_8cpp.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp']
527 ····]],527 ····]],
528 ····['serializedistance_342',·['serializeDistance',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#ad082c292293ec38f61e8e8d7099adfc1',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],528 ····['serializedistance_342',·['serializeDistance',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#ad082c292293ec38f61e8e8d7099adfc1',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
529 ····['serializefepstatevalue_343',·['serializeFEPStateValue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#affc6d54d2995d645c93d6ce969d08b60',·1,·'anonymous_namespace{atoms.cpp}']]],529 ····['serializefepstatevalue_343',·['serializeFEPStateValue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#affc6d54d2995d645c93d6ce969d08b60',·1,·'anonymous_namespace{atoms.cpp}']]],
530 ····['serializeindex_344',·['serializeIndex',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a9f8b9fdd59cb7ab0c3b02ba9049086ba',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],530 ····['serializeindex_344',·['serializeIndex',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a9f8b9fdd59cb7ab0c3b02ba9049086ba',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
531 ····['serializeindices_345',·['serializeIndices',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a54d8c4a0fd3adda2006c2e87469a9fbe',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],531 ····['serializeindices_345',·['serializeIndices',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a54d8c4a0fd3adda2006c2e87469a9fbe',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
532 ····['serializekeyvaluetree_346',·['serializeKeyValueTree',·['../group__module__utility.xhtml#gac492f6f7f07670658a028ddddaf2b2ab',·1,·'gmx']]],532 ····['serializekeyvaluetree_346',·['serializeKeyValueTree',·['../group__module__utility.xhtml#gac492f6f7f07670658a028ddddaf2b2ab',·1,·'gmx']]],
533 ····['serializemrcdensitymapheader_347',·['serializeMrcDensityMapHeader',·['../namespacegmx.xhtml#a5155703ab2ced2f51fb4533e20006061',·1,·'gmx']]],533 ····['serializemrcdensitymapheader_347',·['serializeMrcDensityMapHeader',·['../namespacegmx.xhtml#a5155703ab2ced2f51fb4533e20006061',·1,·'gmx']]],
534 ····['serializeparticle_348',·['serializeParticle',·['../classSimulationParticle.xhtml#a75cf84775c19b87cbe4123e3083cec80',·1,·'SimulationParticle']]],534 ····['serializeparticle_348',·['serializeParticle',·['../classSimulationParticle.xhtml#a75cf84775c19b87cbe4123e3083cec80',·1,·'SimulationParticle']]],
535 ····['serializestringtable_349',·['serializeStringTable',·['../classStringTable.xhtml#a15fcf1107a2f8641e5bb29660e568afe',·1,·'StringTable']]],535 ····['serializestringtable_349',·['serializeStringTable',·['../classStringTable.xhtml#a15fcf1107a2f8641e5bb29660e568afe',·1,·'StringTable']]],
 536 ····['serializevalue_350',·['serializevalue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a217ed846a46d7f46b27ddd8e2cb523ff',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·real·*value)'],
536 ····['serializevalue_350',·['serializevalue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#afe178996894904b7dfd46f4ca3c0a6b8',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value,·const·StringTable·&amp;table)'],537 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#afe178996894904b7dfd46f4ca3c0a6b8',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value,·const·StringTable·&amp;table)'],
 538 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a3157b99b1bedcfe7b4265f83cb6bc3f4',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value)'],
537 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a745fdcc1e0a8b9364ff6df20862a33ce',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·unsigned·short·*value)'],539 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a745fdcc1e0a8b9364ff6df20862a33ce',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·unsigned·short·*value)']
538 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a217ed846a46d7f46b27ddd8e2cb523ff',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·real·*value)'], 
539 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a3157b99b1bedcfe7b4265f83cb6bc3f4',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value)'] 
540 ····]],540 ····]],
541 ····['serializevaluetype_351',·['serializeValueType',·['../namespacegmx_1_1anonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#ae6763d0fe0a3afb9c9d057f76a41e2d5',·1,·'gmx::anonymous_namespace{keyvaluetreeserializer.cpp}']]],541 ····['serializevaluetype_351',·['serializeValueType',·['../namespacegmx_1_1anonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#ae6763d0fe0a3afb9c9d057f76a41e2d5',·1,·'gmx::anonymous_namespace{keyvaluetreeserializer.cpp}']]],
542 ····['series_5fsinhx_352',·['series_sinhx',·['../namespacegmx.xhtml#a92d3eb4aaecff5c613995ed4bce22a0a',·1,·'gmx']]],542 ····['series_5fsinhx_352',·['series_sinhx',·['../namespacegmx.xhtml#a92d3eb4aaecff5c613995ed4bce22a0a',·1,·'gmx']]],
543 ····['sessionpossible_353',·['sessionPossible',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a2a520cd67703dbad9a08fa372e88cdf3',·1,·'gmx::ImdSession::Impl']]],543 ····['sessionpossible_353',·['sessionPossible',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a2a520cd67703dbad9a08fa372e88cdf3',·1,·'gmx::ImdSession::Impl']]],
 544 ····['set_354',·['set',·['../classgmx_1_1SimulationSignal.xhtml#a2f60c4f184cf42ebd97c52c91d287f63',·1,·'gmx::SimulationSignal::set'],
 545 ········['../classgmx_1_1LincsGpu.xhtml#a7c7ef58ff02dd4b25f4c3b3618694ba4',·1,·'gmx::LincsGpu::set()'],
544 ····['set_354',·['set',·['../classgmx_1_1SettleGpu.xhtml#a5368b3f8d0668cf397c08f196f10a638',·1,·'gmx::SettleGpu::set()'],546 ········['../classgmx_1_1SettleGpu.xhtml#a5368b3f8d0668cf397c08f196f10a638',·1,·'gmx::SettleGpu::set()'],
545 ········['../classgmx_1_1FlagsTemplate.xhtml#a6964255db6b459fddd71b8a87c0c8211',·1,·'gmx::FlagsTemplate::set(FlagType·flag,·bool·bSet)'], 
546 ········['../classgmx_1_1FlagsTemplate.xhtml#a0a4b09657a2bf81b9a7765d7560da202',·1,·'gmx::FlagsTemplate::set(FlagType·flag)'], 
547 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a684c2f7bcbac6dfbb29b1223cb083af0',·1,·'gmx::UpdateConstrainGpu::Impl::set()'], 
548 ········['../parser__internal_8h.xhtml#a8553aeb4ef79ad62e90241cf54e221d5',·1,·'set():&#160;parser_internal.h'],547 ········['../parser__internal_8h.xhtml#a8553aeb4ef79ad62e90241cf54e221d5',·1,·'set():&#160;parser_internal.h'],
549 ········['../classgmx_1_1SimulationSignal.xhtml#a2f60c4f184cf42ebd97c52c91d287f63',·1,·'gmx::SimulationSignal::set'], 
550 ········['../classgmx_1_1LincsGpu.xhtml#a7c7ef58ff02dd4b25f4c3b3618694ba4',·1,·'gmx::LincsGpu::set()']548 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a684c2f7bcbac6dfbb29b1223cb083af0',·1,·'gmx::UpdateConstrainGpu::Impl::set()'],
 549 ········['../classgmx_1_1FlagsTemplate.xhtml#a0a4b09657a2bf81b9a7765d7560da202',·1,·'gmx::FlagsTemplate::set(FlagType·flag)'],
 550 ········['../classgmx_1_1FlagsTemplate.xhtml#a6964255db6b459fddd71b8a87c0c8211',·1,·'gmx::FlagsTemplate::set(FlagType·flag,·bool·bSet)']
551 ····]],551 ····]],
552 ····['set_5fatoms_355',·['set_atoms',·['../indexutil_8cpp.xhtml#a70ece65ec7e83272fca80a96ef3d2847',·1,·'indexutil.cpp']]],552 ····['set_5fatoms_355',·['set_atoms',·['../indexutil_8cpp.xhtml#a70ece65ec7e83272fca80a96ef3d2847',·1,·'indexutil.cpp']]],
553 ····['set_5fbox_5frel_356',·['set_box_rel',·['../state_8h.xhtml#a6f96a8a73bc80a569e68d84bdea39eeb',·1,·'state.cpp']]],553 ····['set_5fbox_5frel_356',·['set_box_rel',·['../state_8h.xhtml#a6f96a8a73bc80a569e68d84bdea39eeb',·1,·'state.cpp']]],
554 ····['set_5fdd_5fcell_5fsizes_357',·['set_dd_cell_sizes',·['../cellsizes_8h.xhtml#a13a488d22b535ac37feeeea1976d02a2',·1,·'cellsizes.cpp']]],554 ····['set_5fdd_5fcell_5fsizes_357',·['set_dd_cell_sizes',·['../cellsizes_8h.xhtml#a13a488d22b535ac37feeeea1976d02a2',·1,·'cellsizes.cpp']]],
555 ····['set_5fdd_5fcell_5fsizes_5fslb_358',·['set_dd_cell_sizes_slb',·['../cellsizes_8h.xhtml#a636bac8dbffda8e0f69cee7b6f2fbfdc',·1,·'cellsizes.cpp']]],555 ····['set_5fdd_5fcell_5fsizes_5fslb_358',·['set_dd_cell_sizes_slb',·['../cellsizes_8h.xhtml#a636bac8dbffda8e0f69cee7b6f2fbfdc',·1,·'cellsizes.cpp']]],
556 ····['set_5fdd_5fcorners_359',·['set_dd_corners',·['../partition_8cpp.xhtml#ae66c14d715a0611d7a8224fe94c4bf22',·1,·'partition.cpp']]],556 ····['set_5fdd_5fcorners_359',·['set_dd_corners',·['../partition_8cpp.xhtml#ae66c14d715a0611d7a8224fe94c4bf22',·1,·'partition.cpp']]],
557 ····['set_5fdd_5fdim_360',·['set_dd_dim',·['../domdec__setup_8cpp.xhtml#a48adf64b6000c286d6bcc18476b350ed',·1,·'domdec_setup.cpp']]],557 ····['set_5fdd_5fdim_360',·['set_dd_dim',·['../domdec__setup_8cpp.xhtml#a48adf64b6000c286d6bcc18476b350ed',·1,·'domdec_setup.cpp']]],
 558 ····['set_5fdd_5fdlb_5fmax_5fcutoff_361',·['set_dd_dlb_max_cutoff',·['../partition_8cpp.xhtml#a2835023cad6d4adddea91fcec249e9bc',·1,·'set_dd_dlb_max_cutoff(t_commrec·*cr,·real·cutoff):&#160;partition.cpp'],
558 ····['set_5fdd_5fdlb_5fmax_5fcutoff_361',·['set_dd_dlb_max_cutoff',·['../dlb_8h.xhtml#a157bf71cdab9ea140756a04b124db881',·1,·'set_dd_dlb_max_cutoff(struct·t_commrec·*cr,·real·cutoff):&#160;partition.cpp'],559 ········['../dlb_8h.xhtml#a157bf71cdab9ea140756a04b124db881',·1,·'set_dd_dlb_max_cutoff(struct·t_commrec·*cr,·real·cutoff):&#160;partition.cpp']
559 ········['../partition_8cpp.xhtml#a2835023cad6d4adddea91fcec249e9bc',·1,·'set_dd_dlb_max_cutoff(t_commrec·*cr,·real·cutoff):&#160;partition.cpp'] 
560 ····]],560 ····]],
561 ····['set_5fddbox_362',·['set_ddbox',·['../box_8cpp.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],561 ····['set_5fddbox_362',·['set_ddbox',·['../box_8cpp.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],
562 ········['../box_8h.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']562 ········['../box_8h.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']
563 ····]],563 ····]],
564 ····['set_5fddbox_5fcr_363',·['set_ddbox_cr',·['../box_8cpp.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],564 ····['set_5fddbox_5fcr_363',·['set_ddbox_cr',·['../box_8h.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],
565 ········['../box_8h.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']565 ········['../box_8cpp.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']
566 ····]],566 ····]],
567 ····['set_5fdlb_5flimits_364',·['set_dlb_limits',·['../dlb_8h.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp'],567 ····['set_5fdlb_5flimits_364',·['set_dlb_limits',·['../dlb_8h.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp'],
568 ········['../dlb_8cpp.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp']568 ········['../dlb_8cpp.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp']
569 ····]],569 ····]],
570 ····['set_5fempty_365',·['set_empty',·['../parser__internal_8h.xhtml#a0340e95b333de1fa7bf551b2a87448e7',·1,·'parser_internal.h']]],570 ····['set_5fempty_365',·['set_empty',·['../parser__internal_8h.xhtml#a0340e95b333de1fa7bf551b2a87448e7',·1,·'parser_internal.h']]],
571 ····['set_5fevaluation_5ffunction_366',·['set_evaluation_function',·['../compiler_8cpp.xhtml#a35320786c5039f3728adb84d85bd4c2b',·1,·'compiler.cpp']]],571 ····['set_5fevaluation_5ffunction_366',·['set_evaluation_function',·['../compiler_8cpp.xhtml#a35320786c5039f3728adb84d85bd4c2b',·1,·'compiler.cpp']]],
572 ····['set_5fexpr_5fvalue_5fstore_367',·['set_expr_value_store',·['../params_8cpp.xhtml#a5da3b2e33fb571c3956ee81d257a8fc1',·1,·'params.cpp']]],572 ····['set_5fexpr_5fvalue_5fstore_367',·['set_expr_value_store',·['../params_8cpp.xhtml#a5da3b2e33fb571c3956ee81d257a8fc1',·1,·'params.cpp']]],
Offset 584, 17 lines modifiedOffset 584, 17 lines modified
584 ····['set_5fposcoll_5fpos_379',·['set_poscoll_pos',·['../sm__position_8cpp.xhtml#a91b6fe60490830e01753fc702a4f0da6',·1,·'sm_position.cpp']]],584 ····['set_5fposcoll_5fpos_379',·['set_poscoll_pos',·['../sm__position_8cpp.xhtml#a91b6fe60490830e01753fc702a4f0da6',·1,·'sm_position.cpp']]],
585 ····['set_5frefpos_5ftype_380',·['set_refpos_type',·['../parsetree_8cpp.xhtml#a57baca0c38204cd51a3d1a433936599e',·1,·'parsetree.cpp']]],585 ····['set_5frefpos_5ftype_380',·['set_refpos_type',·['../parsetree_8cpp.xhtml#a57baca0c38204cd51a3d1a433936599e',·1,·'parsetree.cpp']]],
586 ····['set_5ftric_5fdir_381',·['set_tric_dir',·['../box_8cpp.xhtml#ad1b515f02b66cf33e6aa1cc9ec687875',·1,·'box.cpp']]],586 ····['set_5ftric_5fdir_381',·['set_tric_dir',·['../box_8cpp.xhtml#ad1b515f02b66cf33e6aa1cc9ec687875',·1,·'box.cpp']]],
587 ····['set_5funit_5fsystem_382',·['set_unit_system',·['../classgmx_1_1ColvarProxyGromacs.xhtml#affa600110ea56d0c552bfd70b97ed047',·1,·'gmx::ColvarProxyGromacs']]],587 ····['set_5funit_5fsystem_382',·['set_unit_system',·['../classgmx_1_1ColvarProxyGromacs.xhtml#affa600110ea56d0c552bfd70b97ed047',·1,·'gmx::ColvarProxyGromacs']]],
588 ····['set_5fzones_5fnumhomeatoms_383',·['set_zones_numHomeAtoms',·['../partition_8cpp.xhtml#ac86fe3a1da28baad5fe956c844894701',·1,·'partition.cpp']]],588 ····['set_5fzones_5fnumhomeatoms_383',·['set_zones_numHomeAtoms',·['../partition_8cpp.xhtml#ac86fe3a1da28baad5fe956c844894701',·1,·'partition.cpp']]],
589 ····['setabstol_384',·['setAbsTol',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#aba2dcd7ec0563e05aafd6c176fb286c4',·1,·'gmx::test::SimdBaseTest']]],589 ····['setabstol_384',·['setAbsTol',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#aba2dcd7ec0563e05aafd6c176fb286c4',·1,·'gmx::test::SimdBaseTest']]],
590 ····['setacceptbooleannoprefix_385',·['setAcceptBooleanNoPrefix',·['../classgmx_1_1OptionsAssigner.xhtml#a56938380411404494b76c1170f7ceb7f',·1,·'gmx::OptionsAssigner']]],590 ····['setacceptbooleannoprefix_385',·['setAcceptBooleanNoPrefix',·['../classgmx_1_1OptionsAssigner.xhtml#a56938380411404494b76c1170f7ceb7f',·1,·'gmx::OptionsAssigner']]],
591 ····['setactivedevice_386',·['setactivedevice',·['../device__management__sycl_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management_sycl.cpp'], 
592 ········['../device__management_8h.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management.cpp'],591 ····['setactivedevice_386',·['setactivedevice',·['../device__management_8h.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management.cpp'],
593 ········['../device__management_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management.cpp'],592 ········['../device__management_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management.cpp'],
 593 ········['../device__management__sycl_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management_sycl.cpp'],
594 ········['../device__management__ocl_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_ocl.cpp'],594 ········['../device__management__ocl_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_ocl.cpp'],
595 ········['../device__management__hip_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_hip.cpp']595 ········['../device__management__hip_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_hip.cpp']
596 ····]],596 ····]],
597 ····['setallowedvaluecount_387',·['setAllowedValueCount',·['../classgmx_1_1SelectionOptionStorage.xhtml#ad9f9dafcb85d5d4097716ec4a1b47771',·1,·'gmx::SelectionOptionStorage']]],597 ····['setallowedvaluecount_387',·['setAllowedValueCount',·['../classgmx_1_1SelectionOptionStorage.xhtml#ad9f9dafcb85d5d4097716ec4a1b47771',·1,·'gmx::SelectionOptionStorage']]],
598 ····['setalternatesteppptaskcompletionevent_388',·['setAlternateStepPpTaskCompletionEvent',·['../classgmx_1_1MdGpuGraph_1_1Impl.xhtml#a0dda5a4c6c0ce568851edff2d8a1a607',·1,·'gmx::MdGpuGraph::Impl']]],598 ····['setalternatesteppptaskcompletionevent_388',·['setAlternateStepPpTaskCompletionEvent',·['../classgmx_1_1MdGpuGraph_1_1Impl.xhtml#a0dda5a4c6c0ce568851edff2d8a1a607',·1,·'gmx::MdGpuGraph::Impl']]],
599 ····['setandcheckmtslevels_389',·['setAndCheckMtsLevels',·['../namespacegmx_1_1test_1_1anonymous__namespace_02multipletimestepping_8cpp_03.xhtml#ab30ddb3d9552135e7cdf3f409ca7e440',·1,·'gmx::test::anonymous_namespace{multipletimestepping.cpp}']]],599 ····['setandcheckmtslevels_389',·['setAndCheckMtsLevels',·['../namespacegmx_1_1test_1_1anonymous__namespace_02multipletimestepping_8cpp_03.xhtml#ab30ddb3d9552135e7cdf3f409ca7e440',·1,·'gmx::test::anonymous_namespace{multipletimestepping.cpp}']]],
600 ····['setanharmpolarization_390',·['setAnharmPolarization',·['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#a453466f2383839a833488037e97e52aa',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput']]],600 ····['setanharmpolarization_390',·['setAnharmPolarization',·['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#a453466f2383839a833488037e97e52aa',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput']]],
Offset 604, 16 lines modifiedOffset 604, 16 lines modified
604 ····['setatomproperty_394',·['setAtomProperty',·['../classAtomProperties.xhtml#a739d39a4fa53255266ada2df41fa7544',·1,·'AtomProperties']]],604 ····['setatomproperty_394',·['setAtomProperty',·['../classAtomProperties.xhtml#a739d39a4fa53255266ada2df41fa7544',·1,·'AtomProperties']]],
605 ····['setatomrangeend_395',·['setAtomRangeEnd',·['../classgmx_1_1DomdecZones.xhtml#ae98910a3b4eb865dfadd0a28fc65c966',·1,·'gmx::DomdecZones']]],605 ····['setatomrangeend_395',·['setAtomRangeEnd',·['../classgmx_1_1DomdecZones.xhtml#ae98910a3b4eb865dfadd0a28fc65c966',·1,·'gmx::DomdecZones']]],
606 ····['setatoms_396',·['setatoms',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#ae8e6ba12468592edc3e51ce31449532f',·1,·'gmx::test::SetAtomsTest::setAtoms()'],606 ····['setatoms_396',·['setatoms',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#ae8e6ba12468592edc3e51ce31449532f',·1,·'gmx::test::SetAtomsTest::setAtoms()'],
607 ········['../classgmx_1_1SetAtoms.xhtml#a80c1dc4a5976db3daa93602215fb6e04',·1,·'gmx::SetAtoms::SetAtoms(ChangeAtomsType·atomFlag,·AtomsDataPtr·inputAtoms)'],607 ········['../classgmx_1_1SetAtoms.xhtml#a80c1dc4a5976db3daa93602215fb6e04',·1,·'gmx::SetAtoms::SetAtoms(ChangeAtomsType·atomFlag,·AtomsDataPtr·inputAtoms)'],
608 ········['../classgmx_1_1SetAtoms.xhtml#acfbc067f9a1b885b52204c156077c712',·1,·'gmx::SetAtoms::SetAtoms(SetAtoms·&amp;&amp;old)·noexcept'],608 ········['../classgmx_1_1SetAtoms.xhtml#acfbc067f9a1b885b52204c156077c712',·1,·'gmx::SetAtoms::SetAtoms(SetAtoms·&amp;&amp;old)·noexcept'],
609 ········['../classgmx_1_1SetAtoms.xhtml',·1,·'gmx::SetAtoms']609 ········['../classgmx_1_1SetAtoms.xhtml',·1,·'gmx::SetAtoms']
610 ····]],610 ····]],
611 ····['setatoms_2ecpp_397',·['setatoms.cpp',·['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],611 ····['setatoms_2ecpp_397',·['setatoms.cpp',·['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],
612 ········['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']612 ········['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']
613 ····]],613 ····]],
614 ····['setatoms_2eh_398',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],614 ····['setatoms_2eh_398',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],
615 ····['setatomspointer_399',·['SetAtomsPointer',·['../namespacegmx.xhtml#a88c729a1b6597fd1b7d0ed0e62d4971b',·1,·'gmx']]],615 ····['setatomspointer_399',·['SetAtomsPointer',·['../namespacegmx.xhtml#a88c729a1b6597fd1b7d0ed0e62d4971b',·1,·'gmx']]],
616 ····['setatomssupported_400',·['setAtomsSupported',·['../namespacegmx_1_1test.xhtml#ace67bfa1326428a4e92b52de892d709e',·1,·'gmx::test']]],616 ····['setatomssupported_400',·['setAtomsSupported',·['../namespacegmx_1_1test.xhtml#ace67bfa1326428a4e92b52de892d709e',·1,·'gmx::test']]],
617 ····['setatomssupportedfiles_401',·['SetAtomsSupportedFiles',·['../classgmx_1_1test_1_1SetAtomsSupportedFiles.xhtml',·1,·'gmx::test']]],617 ····['setatomssupportedfiles_401',·['SetAtomsSupportedFiles',·['../classgmx_1_1test_1_1SetAtomsSupportedFiles.xhtml',·1,·'gmx::test']]],
618 ····['setatomstest_402',·['setatomstest',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#a551e80ccc16781970f15eba160df0ada',·1,·'gmx::test::SetAtomsTest::SetAtomsTest()'],618 ····['setatomstest_402',·['setatomstest',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#a551e80ccc16781970f15eba160df0ada',·1,·'gmx::test::SetAtomsTest::SetAtomsTest()'],
619 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml',·1,·'gmx::test::SetAtomsTest']619 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml',·1,·'gmx::test::SetAtomsTest']
Offset 623, 17 lines modifiedOffset 623, 17 lines modified
623 ····['setattribute_405',·['setAttribute',·['../namespacegmx.xhtml#a87c9d4293fe70eb69a90396d4b5379dd',·1,·'gmx']]],623 ····['setattribute_405',·['setAttribute',·['../namespacegmx.xhtml#a87c9d4293fe70eb69a90396d4b5379dd',·1,·'gmx']]],
624 ····['setauthor_406',·['setAuthor',·['../classgmx_1_1H5md.xhtml#a5eca049688ba0cc7e2bc4897f0e399bd',·1,·'gmx::H5md']]],624 ····['setauthor_406',·['setAuthor',·['../classgmx_1_1H5md.xhtml#a5eca049688ba0cc7e2bc4897f0e399bd',·1,·'gmx::H5md']]],
625 ····['setaveragedatasets_407',·['setAverageDataSets',·['../classgmx_1_1AnalysisDataAverageModule.xhtml#adc61ba269b01d93120060e48fc023ff1',·1,·'gmx::AnalysisDataAverageModule']]],625 ····['setaveragedatasets_407',·['setAverageDataSets',·['../classgmx_1_1AnalysisDataAverageModule.xhtml#adc61ba269b01d93120060e48fc023ff1',·1,·'gmx::AnalysisDataAverageModule']]],
626 ····['setbinwidth_408',·['setBinWidth',·['../classgmx_1_1ComputeDebyeScattering.xhtml#aa568dd95930b2b962e024245211dcb2d',·1,·'gmx::ComputeDebyeScattering']]],626 ····['setbinwidth_408',·['setBinWidth',·['../classgmx_1_1ComputeDebyeScattering.xhtml#aa568dd95930b2b962e024245211dcb2d',·1,·'gmx::ComputeDebyeScattering']]],
627 ····['setbothtime_2ecpp_409',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],627 ····['setbothtime_2ecpp_409',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
628 ····['setbothtimetest_410',·['SetBothTimeTest',·['../classgmx_1_1test_1_1SetBothTimeTest.xhtml',·1,·'gmx::test']]],628 ····['setbothtimetest_410',·['SetBothTimeTest',·['../classgmx_1_1test_1_1SetBothTimeTest.xhtml',·1,·'gmx::test']]],
629 ····['setbound_411',·['setBound',·['../classWorkDivision.xhtml#a12b91800bf19728fc05be324c7ffea0e',·1,·'WorkDivision']]],629 ····['setbound_411',·['setBound',·['../classWorkDivision.xhtml#a12b91800bf19728fc05be324c7ffea0e',·1,·'WorkDivision']]],
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Offset 368, 28 lines modifiedOffset 368, 28 lines modified
368 ····['threadedforcebuffer_3c_20rvec4_20_3e_237',·['ThreadedForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadedForceBuffer.xhtml',·1,·'gmx']]],368 ····['threadedforcebuffer_3c_20rvec4_20_3e_237',·['ThreadedForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadedForceBuffer.xhtml',·1,·'gmx']]],
369 ····['threadforcebuffer_238',·['threadforcebuffer',·['../classgmx_1_1ThreadedForceBuffer.xhtml#aeae6df3244747db1017c222b74258cbe',·1,·'gmx::ThreadedForceBuffer::threadForceBuffer()'],369 ····['threadforcebuffer_238',·['threadforcebuffer',·['../classgmx_1_1ThreadedForceBuffer.xhtml#aeae6df3244747db1017c222b74258cbe',·1,·'gmx::ThreadedForceBuffer::threadForceBuffer()'],
370 ········['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx::ThreadForceBuffer&lt;·ForceBufferElementType·&gt;'],370 ········['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx::ThreadForceBuffer&lt;·ForceBufferElementType·&gt;'],
371 ········['../classgmx_1_1ThreadForceBuffer.xhtml#aca0ff0d302fd340a22c038f8c2b67ee3',·1,·'gmx::ThreadForceBuffer::ThreadForceBuffer()']371 ········['../classgmx_1_1ThreadForceBuffer.xhtml#aca0ff0d302fd340a22c038f8c2b67ee3',·1,·'gmx::ThreadForceBuffer::ThreadForceBuffer()']
372 ····]],372 ····]],
373 ····['threadforcebuffer_3c_20gmx_3a_3abasicvector_20_3e_239',·['ThreadForceBuffer&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],373 ····['threadforcebuffer_3c_20gmx_3a_3abasicvector_20_3e_239',·['ThreadForceBuffer&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],
374 ····['threadforcebuffer_3c_20rvec4_20_3e_240',·['ThreadForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],374 ····['threadforcebuffer_3c_20rvec4_20_3e_240',·['ThreadForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],
 375 ····['threadinginfo_241',·['threadinginfo',·['../classgmx_1_1ThreadingInfo.xhtml',·1,·'gmx::ThreadingInfo'],
375 ····['threadinginfo_241',·['threadinginfo',·['../classgmx_1_1ThreadingInfo.xhtml#a4f867dff40e9790d110a5bb58439f630',·1,·'gmx::ThreadingInfo::ThreadingInfo()'],376 ········['../classgmx_1_1ThreadingInfo.xhtml#a4f867dff40e9790d110a5bb58439f630',·1,·'gmx::ThreadingInfo::ThreadingInfo()']
376 ········['../classgmx_1_1ThreadingInfo.xhtml',·1,·'gmx::ThreadingInfo'] 
377 ····]],377 ····]],
378 ····['threadmpimdrunneraccessbarrier_242',·['threadMpiMdrunnerAccessBarrier',·['../namespacegmx.xhtml#aef8b79bdbe453658a42421841b67dde7',·1,·'gmx']]],378 ····['threadmpimdrunneraccessbarrier_242',·['threadMpiMdrunnerAccessBarrier',·['../namespacegmx.xhtml#aef8b79bdbe453658a42421841b67dde7',·1,·'gmx']]],
379 ····['threadmpitestrunner_243',·['threadMpiTestRunner',·['../group__module__testutils.xhtml#ga6d3fae9732f12f43acd33c7e3ff009b9',·1,·'gmx::test']]],379 ····['threadmpitestrunner_243',·['threadMpiTestRunner',·['../group__module__testutils.xhtml#ga6d3fae9732f12f43acd33c7e3ff009b9',·1,·'gmx::test']]],
380 ····['threadsperatom_244',·['threadsperatom',·['../pme__gpu__constants_8h.xhtml#a3906f1a6891bba7e415ad2b7d3c4cef0',·1,·'ThreadsPerAtom:&#160;pme_gpu_constants.h'],380 ····['threadsperatom_244',·['threadsperatom',·['../pme__gpu__constants_8h.xhtml#a3906f1a6891bba7e415ad2b7d3c4cef0',·1,·'ThreadsPerAtom:&#160;pme_gpu_constants.h'],
381 ········['../structPmeGpuSettings.xhtml#a5e39fbddc82a9b12fa969f4e0f344660',·1,·'PmeGpuSettings::threadsPerAtom']381 ········['../structPmeGpuSettings.xhtml#a5e39fbddc82a9b12fa969f4e0f344660',·1,·'PmeGpuSettings::threadsPerAtom']
382 ····]],382 ····]],
383 ····['threadworkobjects_245',·['threadWorkObjects',·['../classgmx__reverse__top__t.xhtml#a98b8fa58dfc1f1b04cab29658676a3f4',·1,·'gmx_reverse_top_t']]],383 ····['threadworkobjects_245',·['threadWorkObjects',·['../classgmx__reverse__top__t.xhtml#a98b8fa58dfc1f1b04cab29658676a3f4',·1,·'gmx_reverse_top_t']]],
384 ····['threefry_2ecpp_246',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],384 ····['threefry_2ecpp_246',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],
385 ····['threefry_2eh_247',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],385 ····['threefry_2eh_247',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],
386 ····['threefry2x64_248',·['threefry2x64',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx::ThreeFry2x64&lt;·internalCounterBits·&gt;'],386 ····['threefry2x64_248',·['threefry2x64',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx::ThreeFry2x64&lt;·internalCounterBits·&gt;'],
 387 ········['../classgmx_1_1ThreeFry2x64.xhtml#a5a79d409ea4010111bb67832d4a1badd',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0,·uint64_t·key1)'],
387 ········['../classgmx_1_1ThreeFry2x64.xhtml#add624a33176505ea1f48517616405c6c',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],388 ········['../classgmx_1_1ThreeFry2x64.xhtml#add624a33176505ea1f48517616405c6c',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)']
388 ········['../classgmx_1_1ThreeFry2x64.xhtml#a5a79d409ea4010111bb67832d4a1badd',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0,·uint64_t·key1)'] 
389 ····]],389 ····]],
390 ····['threefry2x64_3c_2016_20_3e_249',·['ThreeFry2x64&lt;·16·&gt;',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx']]],390 ····['threefry2x64_3c_2016_20_3e_249',·['ThreeFry2x64&lt;·16·&gt;',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx']]],
391 ····['threefry2x64fast_250',·['threefry2x64fast',·['../classgmx_1_1ThreeFry2x64Fast.xhtml#a63d848b7b9d7d979487cf570846658f7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],391 ····['threefry2x64fast_250',·['threefry2x64fast',·['../classgmx_1_1ThreeFry2x64Fast.xhtml#a63d848b7b9d7d979487cf570846658f7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],
392 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml#a3e9704834e1ae8f8b382aa6229f52be7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0,·uint64_t·key1)'],392 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml#a3e9704834e1ae8f8b382aa6229f52be7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0,·uint64_t·key1)'],
393 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml',·1,·'gmx::ThreeFry2x64Fast&lt;·internalCounterBits·&gt;']393 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml',·1,·'gmx::ThreeFry2x64Fast&lt;·internalCounterBits·&gt;']
394 ····]],394 ····]],
395 ····['threefry2x64general_251',·['threefry2x64general',·['../classgmx_1_1ThreeFry2x64General.xhtml#a1608daa8178161bd983afef6344f227f',·1,·'gmx::ThreeFry2x64General::ThreeFry2x64General(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],395 ····['threefry2x64general_251',·['threefry2x64general',·['../classgmx_1_1ThreeFry2x64General.xhtml#a1608daa8178161bd983afef6344f227f',·1,·'gmx::ThreeFry2x64General::ThreeFry2x64General(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],
Offset 399, 63 lines modifiedOffset 399, 63 lines modified
399 ····['threefry2x64general_3c_2013_2c_2064_20_3e_252',·['ThreeFry2x64General&lt;·13,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],399 ····['threefry2x64general_3c_2013_2c_2064_20_3e_252',·['ThreeFry2x64General&lt;·13,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
400 ····['threefry2x64general_3c_2020_2c_2064_20_3e_253',·['ThreeFry2x64General&lt;·20,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],400 ····['threefry2x64general_3c_2020_2c_2064_20_3e_253',·['ThreeFry2x64General&lt;·20,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
401 ····['threefry2x64general_3c_2020_2c_20internalcounterbits_20_3e_254',·['ThreeFry2x64General&lt;·20,·internalCounterBits·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],401 ····['threefry2x64general_3c_2020_2c_20internalcounterbits_20_3e_254',·['ThreeFry2x64General&lt;·20,·internalCounterBits·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
402 ····['throwbecauseofmissingoutputfiles_255',·['throwBecauseOfMissingOutputFiles',·['../namespacegmx_1_1anonymous__namespace_02handlerestart_8cpp_03.xhtml#ac95056495eb623fbd460c721a64c1fcd',·1,·'gmx::anonymous_namespace{handlerestart.cpp}']]],402 ····['throwbecauseofmissingoutputfiles_255',·['throwBecauseOfMissingOutputFiles',·['../namespacegmx_1_1anonymous__namespace_02handlerestart_8cpp_03.xhtml#ac95056495eb623fbd460c721a64c1fcd',·1,·'gmx::anonymous_namespace{handlerestart.cpp}']]],
403 ····['throwerrorifindexoutofbounds_256',·['throwErrorIfIndexOutOfBounds',·['../namespacegmx_1_1anonymous__namespace_02gmx__covar_8cpp_03.xhtml#aa3b34b3a5be563f547b94e8c51d3ec13',·1,·'gmx::anonymous_namespace{gmx_covar.cpp}']]],403 ····['throwerrorifindexoutofbounds_256',·['throwErrorIfIndexOutOfBounds',·['../namespacegmx_1_1anonymous__namespace_02gmx__covar_8cpp_03.xhtml#aa3b34b3a5be563f547b94e8c51d3ec13',·1,·'gmx::anonymous_namespace{gmx_covar.cpp}']]],
404 ····['throwifnonemptyandonlywhitespace_257',·['throwIfNonEmptyAndOnlyWhitespace',·['../namespacegmx_1_1test.xhtml#a26d94b8bbe10b3fa39e5c03ef3833b4a',·1,·'gmx::test']]],404 ····['throwifnonemptyandonlywhitespace_257',·['throwIfNonEmptyAndOnlyWhitespace',·['../namespacegmx_1_1test.xhtml#a26d94b8bbe10b3fa39e5c03ef3833b4a',·1,·'gmx::test']]],
405 ····['throwifnotfound_258',·['throwIfNotFound',·['../classgmx_1_1DataFileOptions.xhtml#aff308586dddac14dadf6ddf3a1a85bd0',·1,·'gmx::DataFileOptions']]],405 ····['throwifnotfound_258',·['throwIfNotFound',·['../classgmx_1_1DataFileOptions.xhtml#aff308586dddac14dadf6ddf3a1a85bd0',·1,·'gmx::DataFileOptions']]],
406 ····['throwlocation_259',·['throwlocation',·['../structgmx_1_1ThrowLocation.xhtml',·1,·'gmx::ThrowLocation'], 
407 ········['../structgmx_1_1ThrowLocation.xhtml#aa8ff40747f544ad0419e8d27972d82d0',·1,·'gmx::ThrowLocation::ThrowLocation()']406 ····['throwlocation_259',·['throwlocation',·['../structgmx_1_1ThrowLocation.xhtml#aa8ff40747f544ad0419e8d27972d82d0',·1,·'gmx::ThrowLocation::ThrowLocation()'],
 407 ········['../structgmx_1_1ThrowLocation.xhtml',·1,·'gmx::ThrowLocation']
408 ····]],408 ····]],
409 ····['throwunlessderivativeisconsistentwithfunction_260',·['throwunlessderivativeisconsistentwithfunction',·['../namespacegmx_1_1internal.xhtml#a71aba30ffd645096a2944c75870c2adc',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(const·std::function&lt;·double(double)&gt;·&amp;function,·const·std::function&lt;·double(double)&gt;·&amp;derivative,·const·std::pair&lt;·real,·real·&gt;·&amp;range)'],409 ····['throwunlessderivativeisconsistentwithfunction_260',·['throwunlessderivativeisconsistentwithfunction',·['../namespacegmx_1_1internal.xhtml#a71aba30ffd645096a2944c75870c2adc',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(const·std::function&lt;·double(double)&gt;·&amp;function,·const·std::function&lt;·double(double)&gt;·&amp;derivative,·const·std::pair&lt;·real,·real·&gt;·&amp;range)'],
410 ········['../namespacegmx_1_1internal.xhtml#a84d04970d8b90387337f316491ed1d73',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(ArrayRef&lt;·const·double·&gt;·function,·ArrayRef&lt;·const·double·&gt;·derivative,·double·inputSpacing,·const·std::pair&lt;·real,·real·&gt;·&amp;range)']410 ········['../namespacegmx_1_1internal.xhtml#a84d04970d8b90387337f316491ed1d73',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(ArrayRef&lt;·const·double·&gt;·function,·ArrayRef&lt;·const·double·&gt;·derivative,·double·inputSpacing,·const·std::pair&lt;·real,·real·&gt;·&amp;range)']
411 ····]],411 ····]],
412 ····['throwuponfailure_261',·['throwUponFailure',·['../namespacegmx_1_1anonymous__namespace_02devicetransfers__ocl_8cpp_03.xhtml#a8585858e6acfd82543296fc132f69648',·1,·'gmx::anonymous_namespace{devicetransfers_ocl.cpp}']]],412 ····['throwuponfailure_261',·['throwUponFailure',·['../namespacegmx_1_1anonymous__namespace_02devicetransfers__ocl_8cpp_03.xhtml#a8585858e6acfd82543296fc132f69648',·1,·'gmx::anonymous_namespace{devicetransfers_ocl.cpp}']]],
413 ····['tij_262',·['Tij',·['../structdf__history__t.xhtml#a0a8fc4c3313ee87881ca7ae86e2897b4',·1,·'df_history_t']]],413 ····['tij_262',·['Tij',·['../structdf__history__t.xhtml#a0a8fc4c3313ee87881ca7ae86e2897b4',·1,·'df_history_t']]],
414 ····['tij_5fempirical_263',·['Tij_empirical',·['../structdf__history__t.xhtml#a473ff22c2af8cad04a8670e3d1f33f1b',·1,·'df_history_t']]],414 ····['tij_5fempirical_263',·['Tij_empirical',·['../structdf__history__t.xhtml#a473ff22c2af8cad04a8670e3d1f33f1b',·1,·'df_history_t']]],
415 ····['time_264',·['time',·['../group__module__modularsimulator.xhtml#ga835b14d2053259a125f4baf542e6c515',·1,·'gmx::Time'], 
416 ········['../classgmx_1_1TrajectoryFrame.xhtml#a1d0cbc9e958aebfe26f93b85d54825fb',·1,·'gmx::TrajectoryFrame::time()'], 
417 ········['../classgmx_1_1EnergyAnalysisFrame.xhtml#afe731f5020c1836e00abd1301f59685c',·1,·'gmx::EnergyAnalysisFrame::time()'],415 ····['time_264',·['time',·['../classgmx_1_1EnergyAnalysisFrame.xhtml#afe731f5020c1836e00abd1301f59685c',·1,·'gmx::EnergyAnalysisFrame::time()'],
 416 ········['../group__module__modularsimulator.xhtml#ga835b14d2053259a125f4baf542e6c515',·1,·'gmx::Time'],
418 ········['../classgmx_1_1CorrelationGrid.xhtml#a2167d6647ab5a52f9f1000fcec4cf13daa76d4ef5f3f6a672bbfab2865563e530',·1,·'gmx::CorrelationGrid::Time']417 ········['../classgmx_1_1CorrelationGrid.xhtml#a2167d6647ab5a52f9f1000fcec4cf13daa76d4ef5f3f6a672bbfab2865563e530',·1,·'gmx::CorrelationGrid::Time'],
 418 ········['../classgmx_1_1TrajectoryFrame.xhtml#a1d0cbc9e958aebfe26f93b85d54825fb',·1,·'gmx::TrajectoryFrame::time()']
419 ····]],419 ····]],
420 ····['time_5f_265',·['time_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#ae2b06e9fc97259c2209887de88947e7c',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],420 ····['time_5f_265',·['time_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#ae2b06e9fc97259c2209887de88947e7c',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],
421 ····['timeaveraginginitfactor_266',·['timeAveragingInitFactor',·['../structt__oriresdata.xhtml#ab09a3c184b2ad0b6e6e42c71a507a336',·1,·'t_oriresdata']]],421 ····['timeaveraginginitfactor_266',·['timeAveragingInitFactor',·['../structt__oriresdata.xhtml#ab09a3c184b2ad0b6e6e42c71a507a336',·1,·'t_oriresdata']]],
422 ····['timebegin_267',·['timeBegin',·['../classgmx_1_1EnergyTerm.xhtml#a5f595ce648a601cd0df03f2d4902f23d',·1,·'gmx::EnergyTerm']]],422 ····['timebegin_267',·['timeBegin',·['../classgmx_1_1EnergyTerm.xhtml#a5f595ce648a601cd0df03f2d4902f23d',·1,·'gmx::EnergyTerm']]],
423 ····['timecontrol_2ecpp_268',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],423 ····['timecontrol_2ecpp_268',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],
424 ····['timeend_269',·['timeEnd',·['../classgmx_1_1EnergyTerm.xhtml#af6e29e2d160ae4d901f10f65f8dc3542',·1,·'gmx::EnergyTerm']]],424 ····['timeend_269',·['timeEnd',·['../classgmx_1_1EnergyTerm.xhtml#af6e29e2d160ae4d901f10f65f8dc3542',·1,·'gmx::EnergyTerm']]],
425 ····['timeinterval_270',·['timeInterval',·['../classgmx_1_1EnergyDriftTracker.xhtml#a81594c537b3f94153a918d5e6686ca83',·1,·'gmx::EnergyDriftTracker']]],425 ····['timeinterval_270',·['timeInterval',·['../classgmx_1_1EnergyDriftTracker.xhtml#a81594c537b3f94153a918d5e6686ca83',·1,·'gmx::EnergyDriftTracker']]],
426 ····['timeoptionscaler_271',·['timeoptionscaler',·['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler&lt;·FloatingPointOptionInfo·&gt;'], 
427 ········['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml#a25bf49d070bd4a0c520de6b2be0fc806',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler::TimeOptionScaler()']426 ····['timeoptionscaler_271',·['timeoptionscaler',·['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml#a25bf49d070bd4a0c520de6b2be0fc806',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler::TimeOptionScale[·...·truncated·by·diffoscope;·len:·6,·SHA:·e2de5c7fd3c3b92ff711d09b923c6155ce26999f36fa68adf95423fb94f1cf8d·...·]
 427 ········['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler&lt;·FloatingPointOptionInfo·&gt;']
428 ····]],428 ····]],
429 ····['timeperframeisset_272',·['timePerFrameIsSet',·['../structgmx__tng__trajectory.xhtml#af088af97fed6334da2f6a86bbb593332',·1,·'gmx_tng_trajectory']]],429 ····['timeperframeisset_272',·['timePerFrameIsSet',·['../structgmx__tng__trajectory.xhtml#af088af97fed6334da2f6a86bbb593332',·1,·'gmx_tng_trajectory']]],
430 ····['timers_273',·['timers',·['../structgmx_1_1NbnxmGpu.xhtml#a53d2110fa92330613bf2a97233dffee5',·1,·'gmx::NbnxmGpu']]],430 ····['timers_273',·['timers',·['../structgmx_1_1NbnxmGpu.xhtml#a53d2110fa92330613bf2a97233dffee5',·1,·'gmx::NbnxmGpu']]],
431 ····['timescalefactor_274',·['timeScaleFactor',·['../classgmx_1_1TimeUnitManager.xhtml#ab5c34c0650c9672bbd6a51f85ef774b8',·1,·'gmx::TimeUnitManager']]],431 ····['timescalefactor_274',·['timeScaleFactor',·['../classgmx_1_1TimeUnitManager.xhtml#ab5c34c0650c9672bbd6a51f85ef774b8',·1,·'gmx::TimeUnitManager']]],
432 ····['timesclose_275',·['timesClose',·['../namespacegmx.xhtml#a77fe4c27ecc56cc5e0448842a1218d7c',·1,·'gmx']]],432 ····['timesclose_275',·['timesClose',·['../namespacegmx.xhtml#a77fe4c27ecc56cc5e0448842a1218d7c',·1,·'gmx']]],
433 ····['timespan_276',·['timeSpan',·['../classgmx_1_1EnergyTerm.xhtml#a6fa21d577f34e76489343b9f15cb0f70',·1,·'gmx::EnergyTerm']]],433 ····['timespan_276',·['timeSpan',·['../classgmx_1_1EnergyTerm.xhtml#a6fa21d577f34e76489343b9f15cb0f70',·1,·'gmx::EnergyTerm']]],
434 ····['timestep_277',·['timestep',·['../structgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTestParameters.xhtml#a96082cd681f7abe75ac413d73f088426',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters::timestep'], 
435 ········['../structgmx_1_1TimeStep.xhtml',·1,·'gmx::TimeStep'],434 ····['timestep_277',·['timestep',·['../structgmx_1_1TimeStep.xhtml',·1,·'gmx::TimeStep'],
436 ········['../group__module__modularsimulator.xhtml#ga2f15ba7b08f5e9328be350927770ffe5',·1,·'gmx::TimeStep::TimeStep()'], 
437 ········['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#a36e5c1428b87e64084c3f7c92db237d3',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters::timestep']435 ········['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#a36e5c1428b87e64084c3f7c92db237d3',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters::timestep'],
 436 ········['../structgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTestParameters.xhtml#a96082cd681f7abe75ac413d73f088426',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters::timestep'],
 437 ········['../group__module__modularsimulator.xhtml#ga2f15ba7b08f5e9328be350927770ffe5',·1,·'gmx::TimeStep::TimeStep()']
438 ····]],438 ····]],
439 ····['timestepvalue_278',·['timeStepValue',·['../structgmx_1_1OutputRequirements.xhtml#aebab1037d0aa6cddf15d548934f89309',·1,·'gmx::OutputRequirements']]],439 ····['timestepvalue_278',·['timeStepValue',·['../structgmx_1_1OutputRequirements.xhtml#aebab1037d0aa6cddf15d548934f89309',·1,·'gmx::OutputRequirements']]],
440 ····['timeunit_279',·['timeunit',·['../group__group__publicapi.xhtml#ga72fb720465515c7593a1cde9f00534e7',·1,·'gmx::TimeUnit'],440 ····['timeunit_279',·['timeunit',·['../group__group__publicapi.xhtml#ga72fb720465515c7593a1cde9f00534e7',·1,·'gmx::TimeUnit'],
441 ········['../classgmx_1_1TrajectoryAnalysisSettings.xhtml#a6e22d7484f92e59d1a871a6b4881ed04',·1,·'gmx::TrajectoryAnalysisSettings::timeUnit()'],441 ········['../classgmx_1_1TrajectoryAnalysisSettings.xhtml#a6e22d7484f92e59d1a871a6b4881ed04',·1,·'gmx::TrajectoryAnalysisSettings::timeUnit()'],
442 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a6fd0a3de212858a93d88e8e091c31495',·1,·'gmx::TimeUnitBehavior::timeUnit()'],442 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a6fd0a3de212858a93d88e8e091c31495',·1,·'gmx::TimeUnitBehavior::timeUnit()'],
443 ········['../classgmx_1_1TimeUnitManager.xhtml#a8ca324ae8e6f263eeff34dfcf2a080c4',·1,·'gmx::TimeUnitManager::timeUnit()'],443 ········['../classgmx_1_1TimeUnitManager.xhtml#a8ca324ae8e6f263eeff34dfcf2a080c4',·1,·'gmx::TimeUnitManager::timeUnit()'],
444 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#adfd907fed2ffa9d652bbd280522dc2da',·1,·'gmx::AnalysisDataPlotSettings::timeUnit()'],444 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#adfd907fed2ffa9d652bbd280522dc2da',·1,·'gmx::AnalysisDataPlotSettings::timeUnit()'],
445 ········['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ae309fcdaf33219b938454058745790df',·1,·'gmx::TrajectoryAnalysisSettings::Impl::timeUnit']445 ········['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ae309fcdaf33219b938454058745790df',·1,·'gmx::TrajectoryAnalysisSettings::Impl::timeUnit']
446 ····]],446 ····]],
447 ····['timeunitasstring_280',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]],447 ····['timeunitasstring_280',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]],
448 ····['timeunitbehavior_281',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]],448 ····['timeunitbehavior_281',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]],
449 ····['timeunitmanager_282',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'],449 ····['timeunitmanager_282',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'],
 450 ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()'],
450 ········['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)'],451 ········['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)']
451 ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()'] 
452 ····]],452 ····]],
453 ····['timeunitmanager_2ecpp_283',·['timeunitmanager.cpp',·['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],453 ····['timeunitmanager_2ecpp_283',·['timeunitmanager.cpp',·['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
454 ········['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']454 ········['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
455 ····]],455 ····]],
456 ····['timeunitmanager_2eh_284',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],456 ····['timeunitmanager_2eh_284',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],
457 ····['timevalue_285',·['timevalue',·['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'],457 ····['timevalue_285',·['timevalue',·['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'],
458 ········['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()']458 ········['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()']
459 ····]],459 ····]],
460 ····['timing_286',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]],460 ····['timing_286',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]],
461 ····['timing_2ecpp_287',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],461 ····['timing_2ecpp_287',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],
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Offset 32, 19 lines modifiedOffset 32, 19 lines modified
32 ····['unionfind_2eh_18',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],32 ····['unionfind_2eh_18',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],
33 ····['unionfinder_19',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],33 ····['unionfinder_19',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],
34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],
37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']
38 ····]],38 ····]],
39 ····['unit_23',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'], 
40 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']39 ····['unit_23',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'],
 40 ········['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit']
41 ····]],41 ····]],
 42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'],
42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()'],43 ········['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()']
43 ········['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'] 
44 ····]],44 ····]],
45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],
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Offset 342, 26 lines modifiedOffset 342, 26 lines modified
342 ····['addwithcoupled_212',·['addWithCoupled',·['../namespacegmx.xhtml#a71dab7360755dfa64ab2b9ecae2b50a7',·1,·'gmx']]],342 ····['addwithcoupled_212',·['addWithCoupled',·['../namespacegmx.xhtml#a71dab7360755dfa64ab2b9ecae2b50a7',·1,·'gmx']]],
343 ····['adjustatominformation_213',·['adjustAtomInformation',·['../namespacegmx.xhtml#a275fd149ededf268fc7ffaf9c7fd9a8b',·1,·'gmx']]],343 ····['adjustatominformation_213',·['adjustAtomInformation',·['../namespacegmx.xhtml#a275fd149ededf268fc7ffaf9c7fd9a8b',·1,·'gmx']]],
344 ····['adjustfromsettings_214',·['adjustFromSettings',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#a5471ae98e9950ceb6cf2ece11ba5c130',·1,·'gmx::CommandLineCommonOptionsHolder']]],344 ····['adjustfromsettings_214',·['adjustFromSettings',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#a5471ae98e9950ceb6cf2ece11ba5c130',·1,·'gmx::CommandLineCommonOptionsHolder']]],
345 ····['adjustinputrecbasedonmodules_215',·['adjustInputrecBasedOnModules',·['../classgmx_1_1MDModules.xhtml#a17a16c8f62f862f88627b20f280f740d',·1,·'gmx::MDModules']]],345 ····['adjustinputrecbasedonmodules_215',·['adjustInputrecBasedOnModules',·['../classgmx_1_1MDModules.xhtml#a17a16c8f62f862f88627b20f280f740d',·1,·'gmx::MDModules']]],
346 ····['adjustkeyvaluetreefromoptions_216',·['adjustKeyValueTreeFromOptions',·['../group__module__options.xhtml#ga4ff33b942520181157f23d0204fde157',·1,·'gmx']]],346 ····['adjustkeyvaluetreefromoptions_216',·['adjustKeyValueTreeFromOptions',·['../group__module__options.xhtml#ga4ff33b942520181157f23d0204fde157',·1,·'gmx']]],
347 ····['adl_5fp_217',·['ADL_P',·['../device__management__sycl__intel__device__ids_8cpp.xhtml#a2cbf4ef8d324a75842da95cf157ad662a60e8f3442024c1d700d929d41071f9fa',·1,·'device_management_sycl_intel_device_ids.cpp']]],347 ····['adl_5fp_217',·['ADL_P',·['../device__management__sycl__intel__device__ids_8cpp.xhtml#a2cbf4ef8d324a75842da95cf157ad662a60e8f3442024c1d700d929d41071f9fa',·1,·'device_management_sycl_intel_device_ids.cpp']]],
348 ····['advancepointinsubgrid_218',·['advancePointInSubgrid',·['../namespacegmx.xhtml#a796a4671abfe96e1c695934237ba1af1',·1,·'gmx']]],348 ····['advancepointinsubgrid_218',·['advancePointInSubgrid',·['../namespacegmx.xhtml#a796a4671abfe96e1c695934237ba1af1',·1,·'gmx']]],
 349 ····['affinetransformation_219',·['affinetransformation',·['../classgmx_1_1AffineTransformation.xhtml',·1,·'gmx::AffineTransformation'],
349 ····['affinetransformation_219',·['affinetransformation',·['../classgmx_1_1AffineTransformation.xhtml#a9e6d3f723c477ac3d32c10fda33d0b47',·1,·'gmx::AffineTransformation::AffineTransformation()'],350 ········['../classgmx_1_1AffineTransformation.xhtml#a9e6d3f723c477ac3d32c10fda33d0b47',·1,·'gmx::AffineTransformation::AffineTransformation()']
350 ········['../classgmx_1_1AffineTransformation.xhtml',·1,·'gmx::AffineTransformation'] 
351 ····]],351 ····]],
352 ····['after_20compilation_220',·['Element·tree·after·compilation',·['../page_module_selection_compiler.xhtml#selcompiler_tree',·1,·'']]],352 ····['after_20compilation_220',·['Element·tree·after·compilation',·['../page_module_selection_compiler.xhtml#selcompiler_tree',·1,·'']]],
 353 ····['afterfrom_221',·['afterfrom',·['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom&lt;·FromType·&gt;'],
353 ····['afterfrom_221',·['afterfrom',·['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml#a2ab97b38dd624b519ab260f18c65f6e6',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom::AfterFrom()'],354 ········['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml#a2ab97b38dd624b519ab260f18c65f6e6',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom::AfterFrom()']
354 ········['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom&lt;·FromType·&gt;'] 
355 ····]],355 ····]],
356 ····['against_20tt_20libgromacs_20tt_222',·['Linking·against·&lt;tt&gt;libgromacs&lt;/tt&gt;',·['../page_usinglibrary.xhtml#autotoc_md103',·1,·'']]],356 ····['against_20tt_20libgromacs_20tt_222',·['Linking·against·&lt;tt&gt;libgromacs&lt;/tt&gt;',·['../page_usinglibrary.xhtml#autotoc_md103',·1,·'']]],
357 ····['ai_223',·['ai',·['../classInteractionOfType.xhtml#aea9e0f61528c3026b34a0c304d4a2422',·1,·'InteractionOfType::ai()'], 
358 ········['../structBondedInteraction.xhtml#a39089dc69980e84281a0dc1069a4cd12',·1,·'BondedInteraction::ai()'], 
359 ········['../structMoleculePatch.xhtml#a961bb46d8143f2398991f6575fd74cca',·1,·'MoleculePatch::ai()'],357 ····['ai_223',·['ai',·['../structMoleculePatch.xhtml#a961bb46d8143f2398991f6575fd74cca',·1,·'MoleculePatch::ai()'],
360 ········['../classVsiteBondedInteraction.xhtml#a757d62f6874409547ef7004bb96e0504',·1,·'VsiteBondedInteraction::ai()']358 ········['../classVsiteBondedInteraction.xhtml#a757d62f6874409547ef7004bb96e0504',·1,·'VsiteBondedInteraction::ai()'],
 359 ········['../classInteractionOfType.xhtml#aea9e0f61528c3026b34a0c304d4a2422',·1,·'InteractionOfType::ai()'],
 360 ········['../structBondedInteraction.xhtml#a39089dc69980e84281a0dc1069a4cd12',·1,·'BondedInteraction::ai()·const']
361 ····]],361 ····]],
362 ····['aj_224',·['aj',·['../structBondedInteraction.xhtml#a4bfdecec47ae9a83646e84c7dc80d23b',·1,·'BondedInteraction::aj()'],362 ····['aj_224',·['aj',·['../structBondedInteraction.xhtml#a4bfdecec47ae9a83646e84c7dc80d23b',·1,·'BondedInteraction::aj()'],
363 ········['../structMoleculePatch.xhtml#a58d5316b7fb00498ea1e51256b043b1e',·1,·'MoleculePatch::aj()']363 ········['../structMoleculePatch.xhtml#a58d5316b7fb00498ea1e51256b043b1e',·1,·'MoleculePatch::aj()']
364 ····]],364 ····]],
365 ····['ak_225',·['ak',·['../structBondedInteraction.xhtml#a4ec2b156b8544115dfe2848a5dc16b1e',·1,·'BondedInteraction::ak()'],365 ····['ak_225',·['ak',·['../structBondedInteraction.xhtml#a4ec2b156b8544115dfe2848a5dc16b1e',·1,·'BondedInteraction::ak()'],
366 ········['../structMoleculePatch.xhtml#aca196338c459bf579c7b9f77c567f17a',·1,·'MoleculePatch::ak()']366 ········['../structMoleculePatch.xhtml#aca196338c459bf579c7b9f77c567f17a',·1,·'MoleculePatch::ak()']
367 ····]],367 ····]],
Offset 482, 16 lines modifiedOffset 482, 16 lines modified
482 ····['analysisdata_2ecpp_292',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],482 ····['analysisdata_2ecpp_292',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
483 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']483 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
484 ····]],484 ····]],
485 ····['analysisdata_2eh_293',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],485 ····['analysisdata_2eh_293',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
486 ····['analysisdataaveragemodule_294',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],486 ····['analysisdataaveragemodule_294',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],
487 ····['analysisdataaveragemodulepointer_295',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],487 ····['analysisdataaveragemodulepointer_295',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],
488 ····['analysisdatabinaveragemodule_296',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#a6912a0b42cf2d67d73659b8f2d4a5997',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'],488 ····['analysisdatabinaveragemodule_296',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#a6912a0b42cf2d67d73659b8f2d4a5997',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'],
 489 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#ae68db8d9759911b2a903e2918c471771',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule(const·AnalysisHistogramSettings·&amp;settings)'],
489 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule'],490 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule']
490 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#ae68db8d9759911b2a903e2918c471771',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'] 
491 ····]],491 ····]],
492 ····['analysisdatabinaveragemodulepointer_297',·['AnalysisDataBinAverageModulePointer',·['../namespacegmx.xhtml#a2832966f8a1d1e01888448ce10faa595',·1,·'gmx']]],492 ····['analysisdatabinaveragemodulepointer_297',·['AnalysisDataBinAverageModulePointer',·['../namespacegmx.xhtml#a2832966f8a1d1e01888448ce10faa595',·1,·'gmx']]],
493 ····['analysisdatadisplacementmodule_298',·['AnalysisDataDisplacementModule',·['../classgmx_1_1AnalysisDataDisplacementModule.xhtml',·1,·'gmx']]],493 ····['analysisdatadisplacementmodule_298',·['AnalysisDataDisplacementModule',·['../classgmx_1_1AnalysisDataDisplacementModule.xhtml',·1,·'gmx']]],
494 ····['analysisdatadisplacementmodulepointer_299',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],494 ····['analysisdatadisplacementmodulepointer_299',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],
495 ····['analysisdataframeaveragemodule_300',·['AnalysisDataFrameAverageModule',·['../classgmx_1_1AnalysisDataFrameAverageModule.xhtml',·1,·'gmx']]],495 ····['analysisdataframeaveragemodule_300',·['AnalysisDataFrameAverageModule',·['../classgmx_1_1AnalysisDataFrameAverageModule.xhtml',·1,·'gmx']]],
496 ····['analysisdataframeaveragemodulepointer_301',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],496 ····['analysisdataframeaveragemodulepointer_301',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],
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101 ····['basictest_46',·['basicTest',·['../classgmx_1_1test_1_1TrajectoryFrameWriterTest.xhtml#af60c02f3ca19494613898ebe603da1b0',·1,·'gmx::test::TrajectoryFrameWriterTest']]],101 ····['basictest_46',·['basicTest',·['../classgmx_1_1test_1_1TrajectoryFrameWriterTest.xhtml#af60c02f3ca19494613898ebe603da1b0',·1,·'gmx::test::TrajectoryFrameWriterTest']]],
102 ····['basicvector_47',·['basicvector',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;'],102 ····['basicvector_47',·['basicvector',·['../classgmx_1_1BasicVector.xhtml',·1,·'gmx::BasicVector&lt;·ValueType·&gt;'],
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105 ········['../classgmx_1_1BasicVector.xhtml#a35f9473fbd9dbc5122c077913b768309',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)'],104 ········['../classgmx_1_1BasicVector.xhtml#a35f9473fbd9dbc5122c077913b768309',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)'],
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106 ········['../classgmx_1_1BasicVector.xhtml#a9fc3a859d4ec7431af1481d2b4f4dfe9',·1,·'gmx::BasicVector::BasicVector(const·BasicVector·&amp;src)=default'],106 ········['../classgmx_1_1BasicVector.xhtml#a9fc3a859d4ec7431af1481d2b4f4dfe9',·1,·'gmx::BasicVector::BasicVector(const·BasicVector·&amp;src)=default'],
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138 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],138 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#ab4801001dba830e69c9984d97e9c4932',·1,·'gmx::internal::SimdArrayRef::begin()'],
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140 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],140 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'],
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148 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],149 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)']
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255 ····['binputcheckingdisabled_5f_152',·['bInputCheckingDisabled_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#a7cd2a4a1fd3c7e2d716acef2c8e6f871',·1,·'gmx::FileNameOptionManager::Impl']]],255 ····['binputcheckingdisabled_5f_152',·['bInputCheckingDisabled_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#a7cd2a4a1fd3c7e2d716acef2c8e6f871',·1,·'gmx::FileNameOptionManager::Impl']]],
256 ····['bins_153',·['bins',·['../classgmx_1_1TestParticleInsertion.xhtml#aea7501db300437f517614fdbac3a381d',·1,·'gmx::TestParticleInsertion::bins()'],256 ····['bins_153',·['bins',·['../classgmx_1_1TestParticleInsertion.xhtml#aea7501db300437f517614fdbac3a381d',·1,·'gmx::TestParticleInsertion::bins()'],
257 ········['../structUmbrellaOptions.xhtml#a6e4eac2a452db3b73109094936d921a9',·1,·'UmbrellaOptions::bins']257 ········['../structUmbrellaOptions.xhtml#a6e4eac2a452db3b73109094936d921a9',·1,·'UmbrellaOptions::bins']
258 ····]],258 ····]],
259 ····['binuse_5f_154',·['bInUse_',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a4ec16f5bca468bf76020234d9f2db510',·1,·'gmx::test::internal::TestReferenceDataImpl']]],259 ····['binuse_5f_154',·['bInUse_',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a4ec16f5bca468bf76020234d9f2db510',·1,·'gmx::test::internal::TestReferenceDataImpl']]],
260 ····['binwidth_155',·['binwidth',·['../classgmx_1_1AnalysisHistogramSettings.xhtml#af927ef5703f2e7aceac66d8bf912b1e9',·1,·'gmx::AnalysisHistogramSettings::binWidth()'], 
261 ········['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#add437ddf91989778860826153c6b636c',·1,·'gmx::AnalysisHistogramSettingsInitializer::binWidth()']260 ····['binwidth_155',·['binwidth',·['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#add437ddf91989778860826153c6b636c',·1,·'gmx::AnalysisHistogramSettingsInitializer::binWidth()'],
 261 ········['../classgmx_1_1AnalysisHistogramSettings.xhtml#af927ef5703f2e7aceac66d8bf912b1e9',·1,·'gmx::AnalysisHistogramSettings::binWidth()']
262 ····]],262 ····]],
263 ····['bir_156',·['bIr',·['../structTpxFileHeader.xhtml#a2c041ee5b81c0e8056c7ad6f848c24b8',·1,·'TpxFileHeader']]],263 ····['bir_156',·['bIr',·['../structTpxFileHeader.xhtml#a2c041ee5b81c0e8056c7ad6f848c24b8',·1,·'TpxFileHeader']]],
264 ····['bitmask_2eh_157',·['bitmask.h',·['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],264 ····['bitmask_2eh_157',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
265 ········['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']265 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
266 ····]],266 ····]],
267 ····['bitmask_5fclassname_158',·['BITMASK_CLASSNAME',·['../tests_2bitmask_8h.xhtml#ae98c2c3acbcaf4cebce8326e3ad682cb',·1,·'bitmask.h']]],267 ····['bitmask_5fclassname_158',·['BITMASK_CLASSNAME',·['../tests_2bitmask_8h.xhtml#ae98c2c3acbcaf4cebce8326e3ad682cb',·1,·'bitmask.h']]],
268 ····['bitmask_5fclassname_5f_159',·['BITMASK_CLASSNAME_',·['../tests_2bitmask_8h.xhtml#aa4a16ee87fdc3d8eec077e2ee58cfd8c',·1,·'bitmask.h']]],268 ····['bitmask_5fclassname_5f_159',·['BITMASK_CLASSNAME_',·['../tests_2bitmask_8h.xhtml#aa4a16ee87fdc3d8eec077e2ee58cfd8c',·1,·'bitmask.h']]],
269 ····['bitmask_5fclear_160',·['bitmask_clear',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a18f53c59e5ef4fe3f1b1a649da01fd0a',·1,·'bitmask.h']]],269 ····['bitmask_5fclear_160',·['bitmask_clear',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a18f53c59e5ef4fe3f1b1a649da01fd0a',·1,·'bitmask.h']]],
270 ····['bitmask_5finit_5fbit_161',·['bitmask_init_bit',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#ac5dd57fcf554ecadf7f009008e33be8b',·1,·'bitmask.h']]],270 ····['bitmask_5finit_5fbit_161',·['bitmask_init_bit',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#ac5dd57fcf554ecadf7f009008e33be8b',·1,·'bitmask.h']]],
271 ····['bitmask_5finit_5flow_5fbits_162',·['bitmask_init_low_bits',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a7ff662ac524c3f80cfa909c40e337eec',·1,·'bitmask.h']]],271 ····['bitmask_5finit_5flow_5fbits_162',·['bitmask_init_low_bits',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a7ff662ac524c3f80cfa909c40e337eec',·1,·'bitmask.h']]],
272 ····['bitmask_5fis_5fdisjoint_163',·['bitmask_is_disjoint',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a8f44d71faaedd70fca3d13deeb28e184',·1,·'bitmask.h']]],272 ····['bitmask_5fis_5fdisjoint_163',·['bitmask_is_disjoint',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a8f44d71faaedd70fca3d13deeb28e184',·1,·'bitmask.h']]],
Offset 281, 23 lines modifiedOffset 281, 23 lines modified
281 ····['bitsone_172',·['bitsOne',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ac28af5f36df89ee6ff045d87e2063912',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],281 ····['bitsone_172',·['bitsOne',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ac28af5f36df89ee6ff045d87e2063912',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
282 ····['bitspi_173',·['bitsPi',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#aef23c846a68baade7e8b1f458e60e031',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],282 ····['bitspi_173',·['bitsPi',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#aef23c846a68baade7e8b1f458e60e031',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
283 ····['bitszero_174',·['bitsZero',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ad07248f1818be5c6407ebe56636aa8ee',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],283 ····['bitszero_174',·['bitsZero',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ad07248f1818be5c6407ebe56636aa8ee',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
284 ····['bkeepallgenerateddihedrals_175',·['bKeepAllGeneratedDihedrals',·['../structPreprocessResidue.xhtml#ac6bf4b23eb4841aeba900478f82c7469',·1,·'PreprocessResidue']]],284 ····['bkeepallgenerateddihedrals_175',·['bKeepAllGeneratedDihedrals',·['../structPreprocessResidue.xhtml#ac6bf4b23eb4841aeba900478f82c7469',·1,·'PreprocessResidue']]],
285 ····['blbnb_176',·['blbnb',·['../classgmx_1_1Lincs.xhtml#a521d2ee5435381e5c5a4525de63766d6',·1,·'gmx::Lincs']]],285 ····['blbnb_176',·['blbnb',·['../classgmx_1_1Lincs.xhtml#a521d2ee5435381e5c5a4525de63766d6',·1,·'gmx::Lincs']]],
286 ····['blc_177',·['blc',·['../classgmx_1_1Lincs.xhtml#a0869b658ede5d956b5d47cfc5ea9b55f',·1,·'gmx::Lincs']]],286 ····['blc_177',·['blc',·['../classgmx_1_1Lincs.xhtml#a0869b658ede5d956b5d47cfc5ea9b55f',·1,·'gmx::Lincs']]],
287 ····['blc1_178',·['blc1',·['../classgmx_1_1Lincs.xhtml#a348d78d1c99366e604a2bfb689f0b1fc',·1,·'gmx::Lincs']]],287 ····['blc1_178',·['blc1',·['../classgmx_1_1Lincs.xhtml#a348d78d1c99366e604a2bfb689f0b1fc',·1,·'gmx::Lincs']]],
288 ····['blend_179',·['blend',·['../namespacegmx.xhtml#a97f9e21174d44695b53626648515c4b4',·1,·'gmx::blend(float·a,·float·b,·bool·sel)'], 
289 ········['../namespacegmx.xhtml#a069393b3673bd0df6aefc16f8379cf96',·1,·'gmx::blend(double·a,·double·b,·bool·sel)'], 
290 ········['../group__module__simd.xhtml#ga3f3f322cbf3a7d646003849046028f65',·1,·'gmx::blend(SimdFInt32·a,·SimdFInt32·b,·SimdFIBool·sel)'], 
291 ········['../group__module__simd.xhtml#ga443be80edc7822ae0582bc5a4d4da34c',·1,·'gmx::blend(SimdFloat·a,·SimdFloat·b,·SimdFBool·sel)'],288 ····['blend_179',·['blend',·['../group__module__simd.xhtml#ga443be80edc7822ae0582bc5a4d4da34c',·1,·'gmx::blend(SimdFloat·a,·SimdFloat·b,·SimdFBool·sel)'],
292 ········['../namespacegmx.xhtml#a174859a095e84b4a4ee3214547fe8f13',·1,·'gmx::blend(std::int32_t·a,·std::int32_t·b,·bool·sel)'], 
293 ········['../group__module__simd.xhtml#ga897cd563974628f57a983656bc4f0be5',·1,·'gmx::blend(SimdDInt32·a,·SimdDInt32·b,·SimdDIBool·sel)'], 
294 ········['../group__module__simd.xhtml#gaa089539a35e39d68f6c8b40421e0a68e',·1,·'gmx::blend(SimdDouble·a,·SimdDouble·b,·SimdDBool·sel)'],289 ········['../group__module__simd.xhtml#gafa1d01238ab3305ab17f301f73eaeaa1',·1,·'gmx::blend(Simd4Double·a,·Simd4Double·b,·Simd4DBool·sel)'],
295 ········['../group__module__simd.xhtml#ga9a3c7493047defc21bf934ca9fc39476',·1,·'gmx::blend(Simd4Float·a,·Simd4Float·b,·Simd4FBool·sel)'],290 ········['../group__module__simd.xhtml#ga9a3c7493047defc21bf934ca9fc39476',·1,·'gmx::blend(Simd4Float·a,·Simd4Float·b,·Simd4FBool·sel)'],
296 ········['../group__module__simd.xhtml#gafa1d01238ab3305ab17f301f73eaeaa1',·1,·'gmx::blend(Simd4Double·a,·Simd4Double·b,·Simd4DBool·sel)']291 ········['../group__module__simd.xhtml#gaa089539a35e39d68f6c8b40421e0a68e',·1,·'gmx::blend(SimdDouble·a,·SimdDouble·b,·SimdDBool·sel)'],
 292 ········['../group__module__simd.xhtml#ga897cd563974628f57a983656bc4f0be5',·1,·'gmx::blend(SimdDInt32·a,·SimdDInt32·b,·SimdDIBool·sel)'],
 293 ········['../namespacegmx.xhtml#a97f9e21174d44695b53626648515c4b4',·1,·'gmx::blend(float·a,·float·b,·bool·sel)'],
 294 ········['../namespacegmx.xhtml#a174859a095e84b4a4ee3214547fe8f13',·1,·'gmx::blend(std::int32_t·a,·std::int32_t·b,·bool·sel)'],
 295 ········['../namespacegmx.xhtml#a069393b3673bd0df6aefc16f8379cf96',·1,·'gmx::blend(double·a,·double·b,·bool·sel)'],
 296 ········['../group__module__simd.xhtml#ga3f3f322cbf3a7d646003849046028f65',·1,·'gmx::blend(SimdFInt32·a,·SimdFInt32·b,·SimdFIBool·sel)']
297 ····]],297 ····]],
298 ····['bllen_180',·['bllen',·['../classgmx_1_1Lincs.xhtml#a730d195d0cb333e53d6495f81e515127',·1,·'gmx::Lincs']]],298 ····['bllen_180',·['bllen',·['../classgmx_1_1Lincs.xhtml#a730d195d0cb333e53d6495f81e515127',·1,·'gmx::Lincs']]],
299 ····['bllen0_181',·['bllen0',·['../classgmx_1_1Lincs.xhtml#a3ee9e49ac0a6313229d124226e2a4f94',·1,·'gmx::Lincs']]],299 ····['bllen0_181',·['bllen0',·['../classgmx_1_1Lincs.xhtml#a3ee9e49ac0a6313229d124226e2a4f94',·1,·'gmx::Lincs']]],
300 ····['blmf_182',·['blmf',·['../classgmx_1_1Lincs.xhtml#a25ca95bfe854044a505e3311622146b2',·1,·'gmx::Lincs']]],300 ····['blmf_182',·['blmf',·['../classgmx_1_1Lincs.xhtml#a25ca95bfe854044a505e3311622146b2',·1,·'gmx::Lincs']]],
301 ····['blmf1_183',·['blmf1',·['../classgmx_1_1Lincs.xhtml#a901a4826f9964e940971a90fe4309251',·1,·'gmx::Lincs']]],301 ····['blmf1_183',·['blmf1',·['../classgmx_1_1Lincs.xhtml#a901a4826f9964e940971a90fe4309251',·1,·'gmx::Lincs']]],
302 ····['blnr_184',·['blnr',·['../classgmx_1_1Lincs.xhtml#a9ed82f15cc64475ffe441bb1012a7cb6',·1,·'gmx::Lincs']]],302 ····['blnr_184',·['blnr',·['../classgmx_1_1Lincs.xhtml#a9ed82f15cc64475ffe441bb1012a7cb6',·1,·'gmx::Lincs']]],
303 ····['block_185',·['block',·['../classgmx_1_1RangePartitioning.xhtml#a7871c8f88afcd806c7c4e0c7e48395dc',·1,·'gmx::RangePartitioning::Block'],303 ····['block_185',·['block',·['../classgmx_1_1RangePartitioning.xhtml#a7871c8f88afcd806c7c4e0c7e48395dc',·1,·'gmx::RangePartitioning::Block'],
Offset 364, 31 lines modifiedOffset 364, 31 lines modified
364 ····['boolean_20elements_240',·['boolean·elements',·['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],364 ····['boolean_20elements_240',·['boolean·elements',·['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],
365 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_bool',·1,·'Boolean·elements']365 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_bool',·1,·'Boolean·elements']
366 ····]],366 ····]],
367 ····['boolean_20values_241',·['Boolean·values',·['../page_simd.xhtml#autotoc_md62',·1,·'']]],367 ····['boolean_20values_241',·['Boolean·values',·['../page_simd.xhtml#autotoc_md62',·1,·'']]],
368 ····['booleanoption_242',·['booleanoption',·['../classgmx_1_1BooleanOption.xhtml#a580fa621b14b47b0631f613e00f2f3bf',·1,·'gmx::BooleanOption::BooleanOption()'],368 ····['booleanoption_242',·['booleanoption',·['../classgmx_1_1BooleanOption.xhtml#a580fa621b14b47b0631f613e00f2f3bf',·1,·'gmx::BooleanOption::BooleanOption()'],
369 ········['../classgmx_1_1BooleanOption.xhtml',·1,·'gmx::BooleanOption']369 ········['../classgmx_1_1BooleanOption.xhtml',·1,·'gmx::BooleanOption']
370 ····]],370 ····]],
 371 ····['booleanoptioninfo_243',·['booleanoptioninfo',·['../classgmx_1_1BooleanOptionInfo.xhtml',·1,·'gmx::BooleanOptionInfo'],
371 ····['booleanoptioninfo_243',·['booleanoptioninfo',·['../classgmx_1_1BooleanOptionInfo.xhtml#aaa90f1e16e75120b323b3dcbe7f5d843',·1,·'gmx::BooleanOptionInfo::BooleanOptionInfo()'],372 ········['../classgmx_1_1BooleanOptionInfo.xhtml#aaa90f1e16e75120b323b3dcbe7f5d843',·1,·'gmx::BooleanOptionInfo::BooleanOptionInfo()']
372 ········['../classgmx_1_1BooleanOptionInfo.xhtml',·1,·'gmx::BooleanOptionInfo'] 
373 ····]],373 ····]],
374 ····['booleanoptionstorage_244',·['booleanoptionstorage',·['../classgmx_1_1BooleanOptionStorage.xhtml',·1,·'gmx::BooleanOptionStorage'],374 ····['booleanoptionstorage_244',·['booleanoptionstorage',·['../classgmx_1_1BooleanOptionStorage.xhtml',·1,·'gmx::BooleanOptionStorage'],
375 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a2a5e82c1584d43c3564ad498785beb11',·1,·'gmx::BooleanOptionStorage::BooleanOptionStorage()']375 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a2a5e82c1584d43c3564ad498785beb11',·1,·'gmx::BooleanOptionStorage::BooleanOptionStorage()']
376 ····]],376 ····]],
377 ····['booleanvaluetostring_245',·['booleanValueToString',·['../md__enums_8h.xhtml#a671fe972ddca1d763b5a13513c04ebc5',·1,·'md_enums.cpp']]],377 ····['booleanvaluetostring_245',·['booleanValueToString',·['../md__enums_8h.xhtml#a671fe972ddca1d763b5a13513c04ebc5',·1,·'md_enums.cpp']]],
378 ····['boolfromenvironmentordefault_246',·['boolFromEnvironmentOrDefault',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__heffte_8cpp_03.xhtml#a29697dccb0406307c20b8c833995b97d',·1,·'gmx::anonymous_namespace{gpu_3dfft_heffte.cpp}']]],378 ····['boolfromenvironmentordefault_246',·['boolFromEnvironmentOrDefault',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__heffte_8cpp_03.xhtml#a29697dccb0406307c20b8c833995b97d',·1,·'gmx::anonymous_namespace{gpu_3dfft_heffte.cpp}']]],
379 ····['boolfromstring_247',·['boolFromString',·['../group__module__utility.xhtml#ga584d812bf08f88312df77eace2eab219',·1,·'gmx']]],379 ····['boolfromstring_247',·['boolFromString',·['../group__module__utility.xhtml#ga584d812bf08f88312df77eace2eab219',·1,·'gmx']]],
380 ····['boolt_248',·['boolt',·['../classgmx_1_1SelectionTreeElement.xhtml#a5681faa349b7dd17efe8c2bcdaac9804',·1,·'gmx::SelectionTreeElement']]],380 ····['boolt_248',·['boolt',·['../classgmx_1_1SelectionTreeElement.xhtml#a5681faa349b7dd17efe8c2bcdaac9804',·1,·'gmx::SelectionTreeElement']]],
381 ····['booltostring_249',·['boolToString',·['../group__module__utility.xhtml#ga3b3b96bfb0ebff9b47f011ab058ceef9',·1,·'gmx']]],381 ····['booltostring_249',·['boolToString',·['../group__module__utility.xhtml#ga3b3b96bfb0ebff9b47f011ab058ceef9',·1,·'gmx']]],
382 ····['booltype_250',·['booltype',·['../structgmx_1_1BoolType.xhtml#ac9aa09c4375a5bb245c289f07f989e59',·1,·'gmx::BoolType::BoolType()'],382 ····['booltype_250',·['booltype',·['../structgmx_1_1BoolType.xhtml#ac9aa09c4375a5bb245c289f07f989e59',·1,·'gmx::BoolType::BoolType()'],
383 ········['../structScalarDataTypes.xhtml#af8788be3633b2d57b2cc963f1a272396',·1,·'ScalarDataTypes::BoolType'],383 ········['../structScalarDataTypes.xhtml#af8788be3633b2d57b2cc963f1a272396',·1,·'ScalarDataTypes::BoolType'],
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Offset 855, 54 lines modifiedOffset 855, 54 lines modified
855 ····['clfftinitializer_589',·['clfftinitializer',·['../classgmx_1_1ClfftInitializer.xhtml',·1,·'gmx::ClfftInitializer'],855 ····['clfftinitializer_589',·['clfftinitializer',·['../classgmx_1_1ClfftInitializer.xhtml',·1,·'gmx::ClfftInitializer'],
856 ········['../classgmx_1_1ClfftInitializer.xhtml#a8e52d5eb9696dbfff76e6bdc9d56353b',·1,·'gmx::ClfftInitializer::ClfftInitializer()']856 ········['../classgmx_1_1ClfftInitializer.xhtml#a8e52d5eb9696dbfff76e6bdc9d56353b',·1,·'gmx::ClfftInitializer::ClfftInitializer()']
857 ····]],857 ····]],
858 ····['clfftinitializer_2ecpp_590',·['clfftinitializer.cpp',·['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],858 ····['clfftinitializer_2ecpp_590',·['clfftinitializer.cpp',·['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
859 ········['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']859 ········['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']
860 ····]],860 ····]],
861 ····['clfftinitializer_2eh_591',·['clfftinitializer.h',·['../clfftinitializer_8h.xhtml',·1,·'']]],861 ····['clfftinitializer_2eh_591',·['clfftinitializer.h',·['../clfftinitializer_8h.xhtml',·1,·'']]],
862 ····['clhandle_592',·['clhandle',·['../classgmx_1_1ClHandle.xhtml#a506140fa32d43652bcffc0dc2f95c366',·1,·'gmx::ClHandle::ClHandle()'],862 ····['clhandle_592',·['clhandle',·['../classgmx_1_1ClHandle.xhtml#a506140fa32d43652bcffc0dc2f95c366',·1,·'gmx::ClHandle::ClHandle(ClHandle·&amp;&amp;)·noexcept=default'],
863 ········['../classgmx_1_1ClHandle.xhtml',·1,·'gmx::ClHandle&lt;·cl_type·&gt;'],863 ········['../classgmx_1_1ClHandle.xhtml#a2dce49849ee0051ee05990c651f0b56a',·1,·'gmx::ClHandle::ClHandle(const·ClHandle·&amp;)=delete'],
864 ········['../classgmx_1_1ClHandle.xhtml#a27f1a3d671ccf77c8c5c724d2c38d0db',·1,·'gmx::ClHandle::ClHandle(cl_type·handle)'],864 ········['../classgmx_1_1ClHandle.xhtml#a27f1a3d671ccf77c8c5c724d2c38d0db',·1,·'gmx::ClHandle::ClHandle(cl_type·handle)'],
865 ········['../classgmx_1_1ClHandle.xhtml#afa26827973b650e659cec6b3fdb90a1c',·1,·'gmx::ClHandle::ClHandle()=delete'],865 ········['../classgmx_1_1ClHandle.xhtml#afa26827973b650e659cec6b3fdb90a1c',·1,·'gmx::ClHandle::ClHandle()=delete'],
866 ········['../classgmx_1_1ClHandle.xhtml#a2dce49849ee0051ee05990c651f0b56a',·1,·'gmx::ClHandle::ClHandle(const·ClHandle·&amp;)=delete']866 ········['../classgmx_1_1ClHandle.xhtml',·1,·'gmx::ClHandle&lt;·cl_type·&gt;']
867 ····]],867 ····]],
868 ····['client_593',·['client',·['../classgmx_1_1LoggingSignaller.xhtml#aaf810ad2f5b09e596a9d2dbb29553125',·1,·'gmx::LoggingSignaller::Client'],868 ····['client_593',·['client',·['../classgmx_1_1LoggingSignaller.xhtml#aaf810ad2f5b09e596a9d2dbb29553125',·1,·'gmx::LoggingSignaller::Client'],
869 ········['../classgmx_1_1NeighborSearchSignaller.xhtml#a3252cb8f172a9adbc7ebe9823e354e92',·1,·'gmx::NeighborSearchSignaller::Client'], 
870 ········['../classgmx_1_1LastStepSignaller.xhtml#afd9ce82ca570b65800e8847edde18bff',·1,·'gmx::LastStepSignaller::Client'],869 ········['../classgmx_1_1LastStepSignaller.xhtml#afd9ce82ca570b65800e8847edde18bff',·1,·'gmx::LastStepSignaller::Client'],
 870 ········['../classgmx_1_1NeighborSearchSignaller.xhtml#a3252cb8f172a9adbc7ebe9823e354e92',·1,·'gmx::NeighborSearchSignaller::Client'],
871 ········['../classgmx_1_1TrajectorySignaller.xhtml#ae0de88b8aa35e7dbf3b17aade886baef',·1,·'gmx::TrajectorySignaller::Client'],871 ········['../classgmx_1_1TrajectorySignaller.xhtml#ae0de88b8aa35e7dbf3b17aade886baef',·1,·'gmx::TrajectorySignaller::Client'],
872 ········['../classgmx_1_1EnergySignaller.xhtml#a94150f5b1e8c15af92db18487806c6bc',·1,·'gmx::EnergySignaller::Client']872 ········['../classgmx_1_1EnergySignaller.xhtml#a94150f5b1e8c15af92db18487806c6bc',·1,·'gmx::EnergySignaller::Client']
873 ····]],873 ····]],
874 ····['clientid_594',·['clientid',·['../classgmx_1_1EnergyData_1_1Element.xhtml#a7bec0626f7b0334084b1de0d74f017ff',·1,·'gmx::EnergyData::Element::clientID()'],874 ····['clientid_594',·['clientid',·['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#ab5ccd5b17d1db7a544a278e22a18862d',·1,·'gmx::VelocityScalingTemperatureCoupling::clientID()'],
 875 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#adcc80949d852ec6d949e909661b4903b',·1,·'gmx::StatePropagatorData::Element::clientID()'],
 876 ········['../classgmx_1_1PullElement.xhtml#a59eab0b7c64c240c5a3d40b0d0965d8a',·1,·'gmx::PullElement::clientID()'],
 877 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#ad8bd318c1b0d38e34c563a9724193353',·1,·'gmx::ParrinelloRahmanBarostat::clientID()'],
 878 ········['../classgmx_1_1NoseHooverChainsData.xhtml#a6231115c2e233938dbe9328cf91e73d2',·1,·'gmx::NoseHooverChainsData::clientID()'],
 879 ········['../classgmx_1_1MttkData.xhtml#a025798d55223c429d122cfc0e4604d3a',·1,·'gmx::MttkData::clientID()'],
 880 ········['../group__module__modularsimulator.xhtml#gadab8128d65de85ab9a5be2da01cadfd3',·1,·'gmx::ICheckpointHelperClient::clientID()'],
875 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#ae39efb9474aa97465e44bed1a0c1c262',·1,·'gmx::ExpandedEnsembleElement::clientID()'],881 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#ae39efb9474aa97465e44bed1a0c1c262',·1,·'gmx::ExpandedEnsembleElement::clientID()'],
 882 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a7bec0626f7b0334084b1de0d74f017ff',·1,·'gmx::EnergyData::Element::clientID()'],
876 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#ac841a4d173f4113f6a58f7fea81f7623',·1,·'gmx::FirstOrderPressureCoupling::clientID()'],883 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#ac841a4d173f4113f6a58f7fea81f7623',·1,·'gmx::FirstOrderPressureCoupling::clientID()'],
877 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#afae0a07cbf3e5a2e127b4cbf7b19822a',·1,·'gmx::FreeEnergyPerturbationData::Element::clientID()'],884 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#afae0a07cbf3e5a2e127b4cbf7b19822a',·1,·'gmx::FreeEnergyPerturbationData::Element::clientID()']
878 ········['../group__module__modularsimulator.xhtml#gadab8128d65de85ab9a5be2da01cadfd3',·1,·'gmx::ICheckpointHelperClient::clientID()'], 
879 ········['../classgmx_1_1MttkData.xhtml#a025798d55223c429d122cfc0e4604d3a',·1,·'gmx::MttkData::clientID()'], 
880 ········['../classgmx_1_1NoseHooverChainsData.xhtml#a6231115c2e233938dbe9328cf91e73d2',·1,·'gmx::NoseHooverChainsData::clientID()'], 
881 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#ad8bd318c1b0d38e34c563a9724193353',·1,·'gmx::ParrinelloRahmanBarostat::clientID()'], 
882 ········['../classgmx_1_1PullElement.xhtml#a59eab0b7c64c240c5a3d40b0d0965d8a',·1,·'gmx::PullElement::clientID()'], 
883 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#adcc80949d852ec6d949e909661b4903b',·1,·'gmx::StatePropagatorData::Element::clientID()'], 
884 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#ab5ccd5b17d1db7a544a278e22a18862d',·1,·'gmx::VelocityScalingTemperatureCoupling::clientID()'] 
885 ····]],885 ····]],
886 ····['clientsocket_595',·['clientsocket',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#adfd42d6e6976ab4573e70c798e685c23',·1,·'gmx::ImdSession::Impl']]],886 ····['clientsocket_595',·['clientsocket',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#adfd42d6e6976ab4573e70c798e685c23',·1,·'gmx::ImdSession::Impl']]],
887 ····['clone_596',·['clone',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#acbaf7e69026d8eb4539b4d039f8ca4b2',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::clone()'],887 ····['clone_596',·['clone',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#acbaf7e69026d8eb4539b4d039f8ca4b2',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::clone()'],
888 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a06da6c303c493beb97fc95f5d6265801',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::clone()'],888 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a06da6c303c493beb97fc95f5d6265801',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::clone()'],
889 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a19b0f24b941e857b7d8bba44fdf880db',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::clone()'],889 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a19b0f24b941e857b7d8bba44fdf880db',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::clone()'],
890 ········['../classgmx_1_1AbstractAverageHistogram.xhtml#ae41c64629aa1fdbc6aa79f6e2c842c7f',·1,·'gmx::AbstractAverageHistogram::clone()']890 ········['../classgmx_1_1AbstractAverageHistogram.xhtml#ae41c64629aa1fdbc6aa79f6e2c842c7f',·1,·'gmx::AbstractAverageHistogram::clone()']
891 ····]],891 ····]],
892 ····['cloneonspawnedthread_597',·['cloneOnSpawnedThread',·['../classgmx_1_1Mdrunner.xhtml#a7c3f076c50e8a65e46c45964586ef0ac',·1,·'gmx::Mdrunner']]],892 ····['cloneonspawnedthread_597',·['cloneOnSpawnedThread',·['../classgmx_1_1Mdrunner.xhtml#a7c3f076c50e8a65e46c45964586ef0ac',·1,·'gmx::Mdrunner']]],
893 ····['close_598',·['close',·['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()'], 
894 ········['../classgmx_1_1TextWriter.xhtml#aeb5664c1d354a35f621061f73888fb0d',·1,·'gmx::TextWriter::close()'], 
895 ········['../classgmx_1_1TextInputStream.xhtml#ad8b5700fa45d4eb69105238d9fdfaca7',·1,·'gmx::TextInputStream::close()'],893 ····['close_598',·['close',·['../classgmx_1_1TextInputStream.xhtml#ad8b5700fa45d4eb69105238d9fdfaca7',·1,·'gmx::TextInputStream::close()'],
896 ········['../classgmx_1_1TextReader.xhtml#a832ce4203c67ac5b86859954c8c96b8f',·1,·'gmx::TextReader::close()'], 
897 ········['../classgmx_1_1StringInputStream.xhtml#abb10d95192f3e79d19764855bcbd1739',·1,·'gmx::StringInputStream::close()'], 
898 ········['../classgmx_1_1TextOutputFile.xhtml#a0e112f234e5bc3c42d4d01087412af56',·1,·'gmx::TextOutputFile::close()'], 
899 ········['../classgmx_1_1TextInputFile.xhtml#a206e851131b014eaef22f56217092e27',·1,·'gmx::TextInputFile::close()'], 
900 ········['../classgmx_1_1StandardInputStream.xhtml#ad47b5f004707624d1ba6963f4cf425d2',·1,·'gmx::StandardInputStream::close()'],894 ········['../classgmx_1_1StandardInputStream.xhtml#ad47b5f004707624d1ba6963f4cf425d2',·1,·'gmx::StandardInputStream::close()'],
 895 ········['../classgmx_1_1TextInputFile.xhtml#a206e851131b014eaef22f56217092e27',·1,·'gmx::TextInputFile::close()'],
 896 ········['../classgmx_1_1TextOutputFile.xhtml#a0e112f234e5bc3c42d4d01087412af56',·1,·'gmx::TextOutputFile::close()'],
901 ········['../classgmx_1_1StringOutputStream.xhtml#a72a9089f662d660616d6ed419d0efe93',·1,·'gmx::StringOutputStream::close()']897 ········['../classgmx_1_1StringOutputStream.xhtml#a72a9089f662d660616d6ed419d0efe93',·1,·'gmx::StringOutputStream::close()'],
 898 ········['../classgmx_1_1StringInputStream.xhtml#abb10d95192f3e79d19764855bcbd1739',·1,·'gmx::StringInputStream::close()'],
 899 ········['../classgmx_1_1TextReader.xhtml#a832ce4203c67ac5b86859954c8c96b8f',·1,·'gmx::TextReader::close()'],
 900 ········['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()'],
 901 ········['../classgmx_1_1TextWriter.xhtml#aeb5664c1d354a35f621061f73888fb0d',·1,·'gmx::TextWriter::close()']
902 ····]],902 ····]],
903 ····['close_5fsymtab_599',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]],903 ····['close_5fsymtab_599',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]],
904 ····['closeafterforcecomputationcpu_600',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]],904 ····['closeafterforcecomputationcpu_600',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]],
905 ····['closeafterforcecomputationgpu_601',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]],905 ····['closeafterforcecomputationgpu_601',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]],
906 ····['closelogfile_602',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]],906 ····['closelogfile_602',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]],
907 ····['closestintegerpoint_603',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],907 ····['closestintegerpoint_603',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],
908 ····['closetimingregion_604',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'],908 ····['closetimingregion_604',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'],
Offset 912, 44 lines modifiedOffset 912, 44 lines modified
912 ····['clusterboundingboxdistance2_606',·['clusterBoundingBoxDistance2',·['../namespacegmx.xhtml#a2ccdf8ae57a26daaf6f5db537d6ea54e',·1,·'gmx']]],912 ····['clusterboundingboxdistance2_606',·['clusterBoundingBoxDistance2',·['../namespacegmx.xhtml#a2ccdf8ae57a26daaf6f5db537d6ea54e',·1,·'gmx']]],
913 ····['clusterdistancekerneltype_607',·['ClusterDistanceKernelType',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddb',·1,·'gmx']]],913 ····['clusterdistancekerneltype_607',·['ClusterDistanceKernelType',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddb',·1,·'gmx']]],
914 ····['clusterdistancekerneltype_2eh_608',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],914 ····['clusterdistancekerneltype_2eh_608',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],
915 ····['clusterflags_609',·['clusterFlags',·['../classgmx_1_1Grid.xhtml#ac63e6850975655ffc43ebd93d50dd318',·1,·'gmx::Grid']]],915 ····['clusterflags_609',·['clusterFlags',·['../classgmx_1_1Grid.xhtml#ac63e6850975655ffc43ebd93d50dd318',·1,·'gmx::Grid']]],
916 ····['clusterisperturbed_610',·['clusterIsPerturbed',·['../classgmx_1_1Grid.xhtml#a4b81fbe012e27d59e6403066546e96f1',·1,·'gmx::Grid']]],916 ····['clusterisperturbed_610',·['clusterIsPerturbed',·['../classgmx_1_1Grid.xhtml#a4b81fbe012e27d59e6403066546e96f1',·1,·'gmx::Grid']]],
917 ····['clusters_20of_20warps_611',·['of·packed·j·clusters·*·#·of·warps',·['../classgmx_1_1GpuPairlist.xhtml#autotoc_md108',·1,·'']]],917 ····['clusters_20of_20warps_611',·['of·packed·j·clusters·*·#·of·warps',·['../classgmx_1_1GpuPairlist.xhtml#autotoc_md108',·1,·'']]],
918 ····['clustsize_2ecpp_612',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],918 ····['clustsize_2ecpp_612',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],
919 ····['cmaincommandlinemodule_613',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule()'],919 ····['cmaincommandlinemodule_613',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule'],
920 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule']920 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule(const·char·*name,·const·char·*shortDescription,·CMainFunction·mainFunction,·InitSettingsFunction·settingsFunction)']
921 ····]],921 ····]],
922 ····['cmainfunction_614',·['cmainfunction',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainFunction'],922 ····['cmainfunction_614',·['cmainfunction',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainFunction'],
923 ········['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction']923 ········['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction']
924 ····]],924 ····]],
925 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_615',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],925 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_615',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],
 926 ····['cmap_616',·['cmap',·['../structgmx__cmapdata__t.xhtml#a84746eed9cc32f714ec10dbe675847d7',·1,·'gmx_cmapdata_t::cmap'],
926 ····['cmap_616',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType::cmap'],927 ········['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType::cmap']
927 ········['../structgmx__cmapdata__t.xhtml#a84746eed9cc32f714ec10dbe675847d7',·1,·'gmx_cmapdata_t::cmap'] 
928 ····]],928 ····]],
929 ····['cmap_5fcoeff_5fmatrix_617',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],929 ····['cmap_5fcoeff_5fmatrix_617',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],
930 ····['cmap_5fdihs_618',·['cmap_dihs',·['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],930 ····['cmap_5fdihs_618',·['cmap_dihs',·['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],
931 ········['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']931 ········['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']
932 ····]],932 ····]],
 933 ····['cmap_5fgrid_619',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t::cmap_grid'],
933 ····['cmap_5fgrid_619',·['cmap_grid',·['../classInteractionDefinitions.xhtml#a7ee9453681c3fe520371511fd663b2cb',·1,·'InteractionDefinitions::cmap_grid'],934 ········['../classInteractionDefinitions.xhtml#a7ee9453681c3fe520371511fd663b2cb',·1,·'InteractionDefinitions::cmap_grid']
934 ········['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t::cmap_grid'] 
935 ····]],935 ····]],
936 ····['cmap_5fsetup_5fgrid_5findex_620',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],936 ····['cmap_5fsetup_5fgrid_5findex_620',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],
937 ····['cmapatomtypes_621',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],937 ····['cmapatomtypes_621',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],
938 ····['cmapdata_622',·['cmapdata',·['../structgmx__cmap__t.xhtml#aa9e7f26ea95886d0fa833eed83cae1ca',·1,·'gmx_cmap_t']]],938 ····['cmapdata_622',·['cmapdata',·['../structgmx__cmap__t.xhtml#aa9e7f26ea95886d0fa833eed83cae1ca',·1,·'gmx_cmap_t']]],
939 ····['cmapgridspacing_5f_623',·['cmapGridSpacing_',·['../structInteractionsOfType.xhtml#aa077cc69502b2f3f0faaa718059cc71c',·1,·'InteractionsOfType']]],939 ····['cmapgridspacing_5f_623',·['cmapGridSpacing_',·['../structInteractionsOfType.xhtml#aa077cc69502b2f3f0faaa718059cc71c',·1,·'InteractionsOfType']]],
940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],
941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],
942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],
943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],
944 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']944 ········['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']
945 ····]],945 ····]],
946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],
947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
948 ········['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']948 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
949 ····]],949 ····]],
950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],
951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],
953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],
954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],
955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
Offset 980, 16 lines modifiedOffset 980, 16 lines modified
980 ····['cmp_5fbool_652',·['cmp_bool',·['../compare_8h.xhtml#a151a02094025c95b0e5ada42d034a50d',·1,·'compare.cpp']]],980 ····['cmp_5fbool_652',·['cmp_bool',·['../compare_8h.xhtml#a151a02094025c95b0e5ada42d034a50d',·1,·'compare.cpp']]],
981 ····['cmp_5fdouble_653',·['cmp_double',·['../compare_8h.xhtml#abcdecc58d66dc4f819b609f1cc3cc401',·1,·'compare.cpp']]],981 ····['cmp_5fdouble_653',·['cmp_double',·['../compare_8h.xhtml#abcdecc58d66dc4f819b609f1cc3cc401',·1,·'compare.cpp']]],
982 ····['cmp_5fdynamicval_654',·['CMP_DYNAMICVAL',·['../sm__compare_8cpp.xhtml#a8ca48e4b031ed599140d615f85f47506',·1,·'sm_compare.cpp']]],982 ····['cmp_5fdynamicval_654',·['CMP_DYNAMICVAL',·['../sm__compare_8cpp.xhtml#a8ca48e4b031ed599140d615f85f47506',·1,·'sm_compare.cpp']]],
983 ····['cmp_5fequal_655',·['CMP_EQUAL',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5a69017e915c3273f6c77dc13aefd5bd0e',·1,·'sm_compare.cpp']]],983 ····['cmp_5fequal_655',·['CMP_EQUAL',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5a69017e915c3273f6c77dc13aefd5bd0e',·1,·'sm_compare.cpp']]],
984 ····['cmp_5ffloat_656',·['cmp_float',·['../compare_8h.xhtml#a171d30057fc5d5f8c8906f4dd6038493',·1,·'compare.cpp']]],984 ····['cmp_5ffloat_656',·['cmp_float',·['../compare_8h.xhtml#a171d30057fc5d5f8c8906f4dd6038493',·1,·'compare.cpp']]],
985 ····['cmp_5fgeq_657',·['CMP_GEQ',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5acbf87d65ff27dd11d09c3d4168ec5690',·1,·'sm_compare.cpp']]],985 ····['cmp_5fgeq_657',·['CMP_GEQ',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5acbf87d65ff27dd11d09c3d4168ec5690',·1,·'sm_compare.cpp']]],
986 ····['cmp_5fgtr_658',·['CMP_GTR',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5a952a8220aefbeb820d9f2a57385004e8',·1,·'sm_compare.cpp']]],986 ····['cmp_5fgtr_658',·['CMP_GTR',·['../sm__compare_8cpp.xhtml#a4c494127cd83d1f0dae8853a278569b5a952a8220aefbeb820d9f2a57385004e8',·1,·'sm_compare.cpp']]],
 987 ····['cmp_5fint_659',·['cmp_int',·['../sm__same_8cpp.xhtml#a82a2e753c2e346d29922e3cdd0c4ca5c',·1,·'cmp_int(const·void·*a,·const·void·*b):&#160;sm_same.cpp'],
987 ····['cmp_5fint_659',·['cmp_int',·['../compare_8h.xhtml#a1e519a5d570e44d59de87a99c1850319',·1,·'cmp_int(FILE·*fp,·const·char·*s,·int·index,·int·i1,·int·i2):&#160;compare.cpp'],988 ········['../compare_8h.xhtml#a1e519a5d570e44d59de87a99c1850319',·1,·'cmp_int(FILE·*fp,·const·char·*s,·int·index,·int·i1,·int·i2):&#160;compare.cpp']
988 ········['../sm__same_8cpp.xhtml#a82a2e753c2e346d29922e3cdd0c4ca5c',·1,·'cmp_int(const·void·*a,·const·void·*b):&#160;sm_same.cpp'] 
989 ····]],989 ····]],
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Offset 179, 16 lines modifiedOffset 179, 16 lines modified
179 ····]],179 ····]],
180 ····['dd_5fdlb_5fis_5flocked_98',·['dd_dlb_is_locked',·['../dlb_8h.xhtml#a7dbea4dd0a5cf6f4c2aa1319a0af8aeb',·1,·'dd_dlb_is_locked(const·gmx_domdec_t·*dd):&#160;dlb.cpp'],180 ····['dd_5fdlb_5fis_5flocked_98',·['dd_dlb_is_locked',·['../dlb_8h.xhtml#a7dbea4dd0a5cf6f4c2aa1319a0af8aeb',·1,·'dd_dlb_is_locked(const·gmx_domdec_t·*dd):&#160;dlb.cpp'],
181 ········['../dlb_8cpp.xhtml#a899f4a25dfaf308a33ecffdb67806db3',·1,·'dd_dlb_is_locked(const·gmx_domdec_t·*dd):&#160;dlb.cpp']181 ········['../dlb_8cpp.xhtml#a899f4a25dfaf308a33ecffdb67806db3',·1,·'dd_dlb_is_locked(const·gmx_domdec_t·*dd):&#160;dlb.cpp']
182 ····]],182 ····]],
183 ····['dd_5fdlb_5fis_5fon_99',·['dd_dlb_is_on',·['../dlb_8h.xhtml#a5cb0b1121277d4a045bcfe8393dec49f',·1,·'dd_dlb_is_on(const·gmx_domdec_t·*dd):&#160;dlb.cpp'],183 ····['dd_5fdlb_5fis_5fon_99',·['dd_dlb_is_on',·['../dlb_8h.xhtml#a5cb0b1121277d4a045bcfe8393dec49f',·1,·'dd_dlb_is_on(const·gmx_domdec_t·*dd):&#160;dlb.cpp'],
184 ········['../dlb_8cpp.xhtml#a29fb885d2d539a7c4ea3a35e54e18e1a',·1,·'dd_dlb_is_on(const·gmx_domdec_t·*dd):&#160;dlb.cpp']184 ········['../dlb_8cpp.xhtml#a29fb885d2d539a7c4ea3a35e54e18e1a',·1,·'dd_dlb_is_on(const·gmx_domdec_t·*dd):&#160;dlb.cpp']
185 ····]],185 ····]],
 186 ····['dd_5fdlb_5flock_100',·['dd_dlb_lock',·['../dlb_8cpp.xhtml#a63f21edf06d87dc8d027fae518471ff3',·1,·'dd_dlb_lock(gmx_domdec_t·*dd):&#160;dlb.cpp'],
186 ····['dd_5fdlb_5flock_100',·['dd_dlb_lock',·['../dlb_8h.xhtml#ace557070a75d6e41050d67978e8d34e6',·1,·'dd_dlb_lock(struct·gmx_domdec_t·*dd):&#160;dlb.cpp'],187 ········['../dlb_8h.xhtml#ace557070a75d6e41050d67978e8d34e6',·1,·'dd_dlb_lock(struct·gmx_domdec_t·*dd):&#160;dlb.cpp']
187 ········['../dlb_8cpp.xhtml#a63f21edf06d87dc8d027fae518471ff3',·1,·'dd_dlb_lock(gmx_domdec_t·*dd):&#160;dlb.cpp'] 
188 ····]],188 ····]],
189 ····['dd_5fdlb_5fset_5fshould_5fcheck_5fwhether_5fto_5fturn_5fdlb_5fon_101',·['dd_dlb_set_should_check_whether_to_turn_dlb_on',·['../dlb_8cpp.xhtml#ad52ec18962905f9fe87ab958e6a41516',·1,·'dd_dlb_set_should_check_whether_to_turn_dlb_on(gmx_domdec_t·*dd,·gmx_bool·bValue):&#160;dlb.cpp'],189 ····['dd_5fdlb_5fset_5fshould_5fcheck_5fwhether_5fto_5fturn_5fdlb_5fon_101',·['dd_dlb_set_should_check_whether_to_turn_dlb_on',·['../dlb_8cpp.xhtml#ad52ec18962905f9fe87ab958e6a41516',·1,·'dd_dlb_set_should_check_whether_to_turn_dlb_on(gmx_domdec_t·*dd,·gmx_bool·bValue):&#160;dlb.cpp'],
190 ········['../dlb_8h.xhtml#aa992d66dad111b73b1ad20e096aefe9e',·1,·'dd_dlb_set_should_check_whether_to_turn_dlb_on(gmx_domdec_t·*dd,·bool·bValue):&#160;dlb.cpp']190 ········['../dlb_8h.xhtml#aa992d66dad111b73b1ad20e096aefe9e',·1,·'dd_dlb_set_should_check_whether_to_turn_dlb_on(gmx_domdec_t·*dd,·bool·bValue):&#160;dlb.cpp']
191 ····]],191 ····]],
192 ····['dd_5fdlb_5funlock_102',·['dd_dlb_unlock',·['../dlb_8cpp.xhtml#a332af6ebbafa9cfb146142c48d17292f',·1,·'dd_dlb_unlock(gmx_domdec_t·*dd):&#160;dlb.cpp'],192 ····['dd_5fdlb_5funlock_102',·['dd_dlb_unlock',·['../dlb_8cpp.xhtml#a332af6ebbafa9cfb146142c48d17292f',·1,·'dd_dlb_unlock(gmx_domdec_t·*dd):&#160;dlb.cpp'],
193 ········['../dlb_8h.xhtml#ab40142ccd9301de26265db1f0d3c2f63',·1,·'dd_dlb_unlock(struct·gmx_domdec_t·*dd):&#160;dlb.cpp']193 ········['../dlb_8h.xhtml#ab40142ccd9301de26265db1f0d3c2f63',·1,·'dd_dlb_unlock(struct·gmx_domdec_t·*dd):&#160;dlb.cpp']
194 ····]],194 ····]],
Offset 465, 16 lines modifiedOffset 465, 16 lines modified
465 ····['densityfittingforce_2ecpp_283',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],465 ····['densityfittingforce_2ecpp_283',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
466 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']466 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
467 ····]],467 ····]],
468 ····['densityfittingforce_2eh_284',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],468 ····['densityfittingforce_2eh_284',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
469 ····['densityfittingforceprovider_285',·['densityfittingforceprovider',·['../classgmx_1_1DensityFittingForceProvider.xhtml#a99f34ce28c7c4b269fe7b9cc0c61c255',·1,·'gmx::DensityFittingForceProvider::DensityFittingForceProvider()'],469 ····['densityfittingforceprovider_285',·['densityfittingforceprovider',·['../classgmx_1_1DensityFittingForceProvider.xhtml#a99f34ce28c7c4b269fe7b9cc0c61c255',·1,·'gmx::DensityFittingForceProvider::DensityFittingForceProvider()'],
470 ········['../classgmx_1_1DensityFittingForceProvider.xhtml',·1,·'gmx::DensityFittingForceProvider']470 ········['../classgmx_1_1DensityFittingForceProvider.xhtml',·1,·'gmx::DensityFittingForceProvider']
471 ····]],471 ····]],
472 ····['densityfittingforceprovider_2ecpp_286',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],472 ····['densityfittingforceprovider_2ecpp_286',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
473 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']473 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
474 ····]],474 ····]],
475 ····['densityfittingforceprovider_2eh_287',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],475 ····['densityfittingforceprovider_2eh_287',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],
477 ····['densityfittingmdptransformfromstring_289',·['densityfittingMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02densityfittingoptions_8cpp_03.xhtml#ad01120df989f6892f2b3716de8220d89',·1,·'gmx::anonymous_namespace{densityfittingoptions.cpp}']]],477 ····['densityfittingmdptransformfromstring_289',·['densityfittingMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02densityfittingoptions_8cpp_03.xhtml#ad01120df989f6892f2b3716de8220d89',·1,·'gmx::anonymous_namespace{densityfittingoptions.cpp}']]],
478 ····['densityfittingmodule_2ecpp_290',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],478 ····['densityfittingmodule_2ecpp_290',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
479 ····['densityfittingmoduleinfo_291',·['DensityFittingModuleInfo',·['../structgmx_1_1DensityFittingModuleInfo.xhtml',·1,·'gmx']]],479 ····['densityfittingmoduleinfo_291',·['DensityFittingModuleInfo',·['../structgmx_1_1DensityFittingModuleInfo.xhtml',·1,·'gmx']]],
480 ····['densityfittingoptions_292',·['DensityFittingOptions',·['../classgmx_1_1DensityFittingOptions.xhtml',·1,·'gmx']]],480 ····['densityfittingoptions_292',·['DensityFittingOptions',·['../classgmx_1_1DensityFittingOptions.xhtml',·1,·'gmx']]],
Offset 485, 79 lines modifiedOffset 485, 79 lines modified
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486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],
487 ····['densityfittingoutputprovider_2eh_297',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],487 ····['densityfittingoutputprovider_2eh_297',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],
488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],
489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],
490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],
491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],
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492 ····['densitysimilaritycrosscorrelation_302',·['densitysimilaritycrosscorrelation',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a4ee22cb21ab72112c8abf3e587e5eccd',·1,·'gmx::anonymous_namespace{densityfi[·...·truncated·by·diffoscope;·len:·81,·SHA:·014519e78fcd7969236f2f618c096ee1ceacf702e82ff3007695f5d2ef07b30b·...·]493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a4ee22cb21ab72112c8abf3e587e5eccd',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::DensitySimilarityCrossCorrelation[·...·truncated·by·diffoscope;·len:·4,·SHA:·3b368f95cf200ac05f599bd35e89916c59b9417666bdba88747300c89e5ea5d4·...·]
493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation'] 
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495 ····['densitysimilarityinnerproduct_303',·['densitysimilarityinnerproduct',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::DensitySimilarityInnerProduct()'],495 ····['densitysimilarityinnerproduct_303',·['densitysimilarityinnerproduct',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::DensitySimilarityInnerProduct()'],
496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct']496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct']
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498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure()'],498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml',·1,·'gmx::DensitySimilarityMeasure'],
499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml',·1,·'gmx::DensitySimilarityMeasure'],499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasureMethod·method,·density·referenceDensity)'],
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500 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept'],501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept']
501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#aa928209c9b6274f37b3feb27487982e0',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(const·DensitySimilarityMeasure·&amp;other)'] 
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504 ····['densitysimilarityrelativeentropy_306',·['densitysimilarityrelativeentropy',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a74837f6fde669bc6fb1acf9467aa6135',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::DensitySimilarityRelativeEntropy()'],504 ····['densitysimilarityrelativeentropy_306',·['densitysimilarityrelativeentropy',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a74837f6fde669bc6fb1acf9467aa6135',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::DensitySimilarityRelativeEntropy()'],
505 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']505 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']
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509 ········['../structgmx_1_1NumericalSplineTableInput.xhtml#a5a62dd0e8d27284c17e59cd4a6e2f1b5',·1,·'gmx::NumericalSplineTableInput::derivative'] 
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520 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#aa882969bb93bebe25b7c701c0a947e26',·1,·'gmx::test::FloatTypeMatcher::DescribeTo()']520 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#aa882969bb93bebe25b7c701c0a947e26',·1,·'gmx::test::FloatTypeMatcher::DescribeTo()']
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524 ········['../classgmx_1_1test_1_1TestDevice.xhtml#af1fb2dc1689e264a1f3966d30d62e8a9',·1,·'gmx::test::TestDevice::description()'],524 ········['../classgmx_1_1test_1_1TestDevice.xhtml#af1fb2dc1689e264a1f3966d30d62e8a9',·1,·'gmx::test::TestDevice::description()'],
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529 ····['deserializedeviceinformations_315',·['deserializedeviceinformations',·['../device__management__common_8cpp.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],529 ····['deserializedeviceinformations_315',·['deserializedeviceinformations',·['../device__management_8h.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],
530 ········['../device__management_8h.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp']530 ········['../device__management__common_8cpp.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp']
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536 ····['deserializemrcdensitymapheader_318',·['deserializeMrcDensityMapHeader',·['../namespacegmx.xhtml#af217931e090e4e83f4b82e75d6c1a6e9',·1,·'gmx']]],536 ····['deserializemrcdensitymapheader_318',·['deserializeMrcDensityMapHeader',·['../namespacegmx.xhtml#af217931e090e4e83f4b82e75d6c1a6e9',·1,·'gmx']]],
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538 ········['../page_modularsimulator.xhtml#autotoc_md46',·1,·'Notes·about·the·modular·simulator·checkpointing·design']538 ········['../page_modularsimulator.xhtml#autotoc_md46',·1,·'Notes·about·the·modular·simulator·checkpointing·design']
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542 ····['destinations_322',·['destinations',·['../structgmx__repl__ex.xhtml#aefaa81351b3b7c2c0f4bde100077b8bc',·1,·'gmx_repl_ex']]],542 ····['destinations_322',·['destinations',·['../structgmx__repl__ex.xhtml#aefaa81351b3b7c2c0f4bde100077b8bc',·1,·'gmx_repl_ex']]],
543 ····['destroygpuhaloexchangenvshmembuf_323',·['destroygpuhaloexchangenvshmembuf',·['../classgmx_1_1GpuHaloExchange.xhtml#aa5a6bc1a552405811b57a1393cc71f77',·1,·'gmx::GpuHaloExchange::destroyGpuHaloExchangeNvshmemBuf()'],543 ····['destroygpuhaloexchangenvshmembuf_323',·['destroygpuhaloexchangenvshmembuf',·['../classgmx_1_1GpuHaloExchange.xhtml#aa5a6bc1a552405811b57a1393cc71f77',·1,·'gmx::GpuHaloExchange::destroyGpuHaloExchangeNvshmemBuf()'],
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544 ········['../classgmx_1_1GpuHaloExchange_1_1Impl.xhtml#a109490dad80cc195fad2e5ca82053b01',·1,·'gmx::GpuHaloExchange::Impl::destroyGpuHaloExchangeNvshmemBuf()'],545 ········['../classgmx_1_1GpuHaloExchange_1_1Impl.xhtml#a109490dad80cc195fad2e5ca82053b01',·1,·'gmx::GpuHaloExchange::Impl::destroyGpuHaloExchangeNvshmemBuf()']
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546 ····]],546 ····]],
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548 ········['../devicebuffer__ocl_8h.xhtml#a008d8a7fc47c0b7d231d7b7ca91e928f',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·&amp;):&#160;devicebuffer_ocl.h'],548 ········['../devicebuffer__ocl_8h.xhtml#a008d8a7fc47c0b7d231d7b7ca91e928f',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·&amp;):&#160;devicebuffer_ocl.h'],
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550 ····]],550 ····]],
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554 ····]],554 ····]],
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555 ····['detect_326',·['detect',·['../classgmx_1_1HardwareTopology.xhtml#a8da17cbedfcbc71ca857ff58cdafd4df',·1,·'gmx::HardwareTopology::detect()'],556 ········['../classgmx_1_1HardwareTopology.xhtml#a8da17cbedfcbc71ca857ff58cdafd4df',·1,·'gmx::HardwareTopology::detect()']
556 ········['../classgmx_1_1CpuInfo.xhtml#ab39e3eb5227a07cf048b337c47f77c97',·1,·'gmx::CpuInfo::detect()'] 
557 ····]],557 ····]],
558 ····['detect_5fflux_5fper_5fchannel_327',·['detect_flux_per_channel',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a48abd5d72f9b32a001091674c191cd21',·1,·'swapcoords.cpp']]],558 ····['detect_5fflux_5fper_5fchannel_327',·['detect_flux_per_channel',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a48abd5d72f9b32a001091674c191cd21',·1,·'swapcoords.cpp']]],
559 ····['detect_5fflux_5fper_5fchannel_5finit_328',·['detect_flux_per_channel_init',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a9e04e622bec9416e9b5b6cd593401ec8',·1,·'swapcoords.cpp']]],559 ····['detect_5fflux_5fper_5fchannel_5finit_328',·['detect_flux_per_channel_init',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a9e04e622bec9416e9b5b6cd593401ec8',·1,·'swapcoords.cpp']]],
560 ····['detectalldeviceinformation_329',·['detectAllDeviceInformation',·['../namespacegmx.xhtml#a5e9915c072ef3d19a4cccfdcd14b31f2',·1,·'gmx']]],560 ····['detectalldeviceinformation_329',·['detectAllDeviceInformation',·['../namespacegmx.xhtml#a5e9915c072ef3d19a4cccfdcd14b31f2',·1,·'gmx']]],
561 ····['detectamdapicidlayout_330',·['detectAmdApicIdLayout',·['../namespacegmx_1_1anonymous__namespace_02cpuinfo_8cpp_03.xhtml#aba97bd2744c1dae8d09128ba04728b59',·1,·'gmx::anonymous_namespace{cpuinfo.cpp}']]],561 ····['detectamdapicidlayout_330',·['detectAmdApicIdLayout',·['../namespacegmx_1_1anonymous__namespace_02cpuinfo_8cpp_03.xhtml#aba97bd2744c1dae8d09128ba04728b59',·1,·'gmx::anonymous_namespace{cpuinfo.cpp}']]],
562 ····['detectgroup_331',·['detectGroup',·['../namespacegmx.xhtml#aa10b9e2cfb6848642822710aa572c068',·1,·'gmx']]],562 ····['detectgroup_331',·['detectGroup',·['../namespacegmx.xhtml#aa10b9e2cfb6848642822710aa572c068',·1,·'gmx']]],
563 ····['detectlogicalprocessorcount_332',·['detectLogicalProcessorCount',·['../namespacegmx_1_1anonymous__namespace_02hardwaretopology_8cpp_03.xhtml#af1aa0e7fca2b547c7830b8a8af6a0fe7',·1,·'gmx::anonymous_namespace{hardwaretopology.cpp}']]],563 ····['detectlogicalprocessorcount_332',·['detectLogicalProcessorCount',·['../namespacegmx_1_1anonymous__namespace_02hardwaretopology_8cpp_03.xhtml#af1aa0e7fca2b547c7830b8a8af6a0fe7',·1,·'gmx::anonymous_namespace{hardwaretopology.cpp}']]],
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600 ····['device_5fmanagement_5fsycl_2ecpp_367',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],600 ····['device_5fmanagement_5fsycl_2ecpp_367',·['device_management_sycl.cpp',·['../device__management__sycl_8cpp.xhtml',·1,·'']]],
601 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_368',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],601 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2ecpp_368',·['device_management_sycl_intel_device_ids.cpp',·['../device__management__sycl__intel__device__ids_8cpp.xhtml',·1,·'']]],
602 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_369',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],602 ····['device_5fmanagement_5fsycl_5fintel_5fdevice_5fids_2eh_369',·['device_management_sycl_intel_device_ids.h',·['../device__management__sycl__intel__device__ids_8h.xhtml',·1,·'']]],
603 ····['device_5fstream_2ecpp_370',·['device_stream.cpp',·['../device__stream_8cpp.xhtml',·1,·'']]],603 ····['device_5fstream_2ecpp_370',·['device_stream.cpp',·['../device__stream_8cpp.xhtml',·1,·'']]],
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133 ····['elecewald_121',·['elecEwald',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3bb682c07204faab64701f7a264bcf50',·1,·'gmx::EnergyFunctionProperties']]],133 ····['elecewald_121',·['elecEwald',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3bb682c07204faab64701f7a264bcf50',·1,·'gmx::EnergyFunctionProperties']]],
134 ····['elecewaldana_122',·['elecEwaldAna',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a7cd59edb314261f159984304364b8b83',·1,·'gmx::EnergyFunctionProperties']]],134 ····['elecewaldana_122',·['elecEwaldAna',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a7cd59edb314261f159984304364b8b83',·1,·'gmx::EnergyFunctionProperties']]],
135 ····['elecewaldtab_123',·['elecEwaldTab',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3dcceed8fc37c68d8a2e13538fc78f1f',·1,·'gmx::EnergyFunctionProperties']]],135 ····['elecewaldtab_123',·['elecEwaldTab',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3dcceed8fc37c68d8a2e13538fc78f1f',·1,·'gmx::EnergyFunctionProperties']]],
136 ····['elecewaldtwin_124',·['elecEwaldTwin',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a8924d386afd3ee5ad5a49c3799ea5efe',·1,·'gmx::EnergyFunctionProperties']]],136 ····['elecewaldtwin_124',·['elecEwaldTwin',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a8924d386afd3ee5ad5a49c3799ea5efe',·1,·'gmx::EnergyFunctionProperties']]],
137 ····['elecrf_125',·['elecRF',·['../structgmx_1_1EnergyFunctionProperties.xhtml#ab4d5fb5fe3bc3305d139e637060457a7',·1,·'gmx::EnergyFunctionProperties']]],137 ····['elecrf_125',·['elecRF',·['../structgmx_1_1EnergyFunctionProperties.xhtml#ab4d5fb5fe3bc3305d139e637060457a7',·1,·'gmx::EnergyFunctionProperties']]],
138 ····['electricfield_126',·['ElectricField',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricField.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],138 ····['electricfield_126',·['ElectricField',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricField.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],
139 ····['electricfield_2ecpp_127',·['electricfield.cpp',·['../tests_2electricfield_8cpp.xhtml',·1,·'(Global·Namespace)'],139 ····['electricfield_2ecpp_127',·['electricfield.cpp',·['../electricfield_8cpp.xhtml',·1,·'(Global·Namespace)'],
140 ········['../electricfield_8cpp.xhtml',·1,·'(Global·Namespace)']140 ········['../tests_2electricfield_8cpp.xhtml',·1,·'(Global·Namespace)']
141 ····]],141 ····]],
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143 ····['electricfielddimension_129',·['ElectricFieldDimension',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],143 ····['electricfielddimension_129',·['ElectricFieldDimension',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],
144 ····['electrophysiology_20position_20swapping_20swap_130',·['&quot;Computational·Electrophysiology&quot;·position·swapping·(swap)',·['../group__module__swap.xhtml',·1,·'']]],144 ····['electrophysiology_20position_20swapping_20swap_130',·['&quot;Computational·Electrophysiology&quot;·position·swapping·(swap)',·['../group__module__swap.xhtml',·1,·'']]],
145 ····['electype_131',·['electype',·['../structgmx_1_1cl__nbparam__params.xhtml#aec4b14c76e37abcd993ec9bb6223e3e8',·1,·'gmx::cl_nbparam_params::elecType'],145 ····['electype_131',·['electype',·['../structgmx_1_1cl__nbparam__params.xhtml#aec4b14c76e37abcd993ec9bb6223e3e8',·1,·'gmx::cl_nbparam_params::elecType'],
146 ········['../namespacegmx.xhtml#a9b1e5351eeecaeb1a7f02e83888b3e75',·1,·'gmx::ElecType'],146 ········['../namespacegmx.xhtml#a9b1e5351eeecaeb1a7f02e83888b3e75',·1,·'gmx::ElecType'],
147 ········['../structgmx_1_1NBParamGpu.xhtml#a6d3f74d9410ed41c4c8284dbf44c374d',·1,·'gmx::NBParamGpu::elecType']147 ········['../structgmx_1_1NBParamGpu.xhtml#a6d3f74d9410ed41c4c8284dbf44c374d',·1,·'gmx::NBParamGpu::elecType']
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266 ····['enableexternalfepstatesetting_163',·['enableexternalfepstatesetting',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a8aab439423afb11beab47abb9201f6bc',·1,·'gmx::FreeEnergyPerturbationData::enableExternalFepStateSetting()'],266 ····['enableexternalfepstatesetting_163',·['enableexternalfepstatesetting',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a8aab439423afb11beab47abb9201f6bc',·1,·'gmx::FreeEnergyPerturbationData::enableExternalFepStateSetting()'],
267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']
268 ····]],268 ····]],
269 ····['enablefpexceptions_164',·['enableFPExceptions',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#afffd8e4835ea5a633d3a6ab2b9c62ae7',·1,·'gmx::CommandLineCommonOptionsHolder']]],269 ····['enablefpexceptions_164',·['enableFPExceptions',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#afffd8e4835ea5a633d3a6ab2b9c62ae7',·1,·'gmx::CommandLineCommonOptionsHolder']]],
270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],
271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],
272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
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273 ····['end_168',·['end',·['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],274 ········['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],
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275 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],276 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],
276 ········['../classgmx_1_1FixedCapacityVector.xhtml#a1950a5a0fa86373664dd67fa2b7341f1',·1,·'gmx::FixedCapacityVector::end()·const·noexcept'],277 ········['../classgmx_1_1FixedCapacityVector.xhtml#a1950a5a0fa86373664dd67fa2b7341f1',·1,·'gmx::FixedCapacityVector::end()·const·noexcept'],
277 ········['../classgmx_1_1EnergyFrame.xhtml#a822dc495870d6ced6e1e3bf3dd12b001',·1,·'gmx::EnergyFrame::end()'],278 ········['../classgmx_1_1EnergyFrame.xhtml#a822dc495870d6ced6e1e3bf3dd12b001',·1,·'gmx::EnergyFrame::end()'],
278 ········['../namespacegmx.xhtml#adc38f264fbd12f7c458acaa006bafc23',·1,·'gmx::end(const·BasicMdspan·&amp;basicMdspan)'], 
279 ········['../namespacegmx.xhtml#a052781576fbbc1c6970be93d67899ed6',·1,·'gmx::end(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'], 
280 ········['../namespacegmx.xhtml#ad27509079b48f39c3f4fab22fd1a7796',·1,·'gmx::end(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'], 
281 ········['../classIListRange.xhtml#af63fb2ced09ef9eccb0e88fbc7b26b09',·1,·'IListRange::end()'],279 ········['../classIListRange.xhtml#af63fb2ced09ef9eccb0e88fbc7b26b09',·1,·'IListRange::end()'],
282 ········['../classgmx_1_1EnergyTerm.xhtml#ac9ab5be006073499a3fc86511b7fb2da',·1,·'gmx::EnergyTerm::end()'], 
283 ········['../classWorkDivision.xhtml#a55b972ca8118361804f650ae4fd70f77',·1,·'WorkDivision::end()'], 
284 ········['../classAtomRange.xhtml#a61e27abc7881206f14ae2dd2af0e97f3',·1,·'AtomRange::end()'],280 ········['../classAtomRange.xhtml#a61e27abc7881206f14ae2dd2af0e97f3',·1,·'AtomRange::end()'],
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285 ········['../classgmx_1_1IntegerBox.xhtml#a88b65fffe1dd2f10b4283ce6c7c0881f',·1,·'gmx::IntegerBox::end()'],282 ········['../classgmx_1_1IntegerBox.xhtml#a88b65fffe1dd2f10b4283ce6c7c0881f',·1,·'gmx::IntegerBox::end()'],
286 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#aa5d327c9a3459a9130dca36a084625c7',·1,·'gmx::internal::SimdArrayRef::end()']283 ········['../classgmx_1_1EnergyTerm.xhtml#ac9ab5be006073499a3fc86511b7fb2da',·1,·'gmx::EnergyTerm::end()'],
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 285 ········['../namespacegmx.xhtml#a052781576fbbc1c6970be93d67899ed6',·1,·'gmx::end(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
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287 ····]],287 ····]],
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289 ····['end_5faction_170',·['END_ACTION',·['../parser__internal_8h.xhtml#a8cff21a873fa69df9a845af194a2bb38',·1,·'parser_internal.h']]],289 ····['end_5faction_170',·['END_ACTION',·['../parser__internal_8h.xhtml#a8cff21a873fa69df9a845af194a2bb38',·1,·'parser_internal.h']]],
290 ····['end_5faction_5ftoplevel_171',·['END_ACTION_TOPLEVEL',·['../parser__internal_8h.xhtml#ac78a505847a3259da9fdc0ab88fd97f2',·1,·'parser_internal.h']]],290 ····['end_5faction_5ftoplevel_171',·['END_ACTION_TOPLEVEL',·['../parser__internal_8h.xhtml#ac78a505847a3259da9fdc0ab88fd97f2',·1,·'parser_internal.h']]],
291 ····['endianswapbehavior_172',·['EndianSwapBehavior',·['../namespacegmx.xhtml#a9dcfc375435eb5edc0e45544fd43e655',·1,·'gmx']]],291 ····['endianswapbehavior_172',·['EndianSwapBehavior',·['../namespacegmx.xhtml#a9dcfc375435eb5edc0e45544fd43e655',·1,·'gmx']]],
292 ····['endindex_173',·['endIndex',·['../structgmx_1_1SelectionLocation.xhtml#a41e340847acbb630e084602422793e99',·1,·'gmx::SelectionLocation']]],292 ····['endindex_173',·['endIndex',·['../structgmx_1_1SelectionLocation.xhtml#a41e340847acbb630e084602422793e99',·1,·'gmx::SelectionLocation']]],
293 ····['enditerator_174',·['endIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#aa020bd1b932f67be6353e08f48d990da',·1,·'gmx::SelectionParserSymbolTable']]],293 ····['enditerator_174',·['endIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#aa020bd1b932f67be6353e08f48d990da',·1,·'gmx::SelectionParserSymbolTable']]],
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686 ····['ethane_393',·['ethane',·['../namespacegmx_1_1test_1_1anonymous__namespace_02updategroups_8cpp_03.xhtml#a90722e7d44d5d0a063d714057d5c9ee5',·1,·'gmx::test::anonymous_namespace{updategroups.cpp}']]],686 ····['ethane_393',·['ethane',·['../namespacegmx_1_1test_1_1anonymous__namespace_02updategroups_8cpp_03.xhtml#a90722e7d44d5d0a063d714057d5c9ee5',·1,·'gmx::test::anonymous_namespace{updategroups.cpp}']]],
687 ····['ethaneua_394',·['ethaneUA',·['../namespacegmx_1_1test_1_1anonymous__namespace_02updategroups_8cpp_03.xhtml#a27779df09c39110bb540b42893717ef7',·1,·'gmx::test::anonymous_namespace{updategroups.cpp}']]],687 ····['ethaneua_394',·['ethaneUA',·['../namespacegmx_1_1test_1_1anonymous__namespace_02updategroups_8cpp_03.xhtml#a27779df09c39110bb540b42893717ef7',·1,·'gmx::test::anonymous_namespace{updategroups.cpp}']]],
688 ····['eticoul_395',·['etiCOUL',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a22814a4fa63720f5c6b6008dbceb4781',·1,·'forcetable.h']]],688 ····['eticoul_395',·['etiCOUL',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a22814a4fa63720f5c6b6008dbceb4781',·1,·'forcetable.h']]],
689 ····['etilj12_396',·['etiLJ12',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67abd1f60de18c1a08fbbf8f701f18bc5dc',·1,·'forcetable.h']]],689 ····['etilj12_396',·['etiLJ12',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67abd1f60de18c1a08fbbf8f701f18bc5dc',·1,·'forcetable.h']]],
690 ····['etilj6_397',·['etiLJ6',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a14de69e4e7dd8738916c6965be9a3b90',·1,·'forcetable.h']]],690 ····['etilj6_397',·['etiLJ6',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a14de69e4e7dd8738916c6965be9a3b90',·1,·'forcetable.h']]],
691 ····['etinr_398',·['etiNR',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67aefe23a4b7521eb5cf444aa993db19829',·1,·'forcetable.h']]],691 ····['etinr_398',·['etiNR',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67aefe23a4b7521eb5cf444aa993db19829',·1,·'forcetable.h']]],
692 ····['evaluate_399',·['evaluate',·['../classgmx_1_1SelectionCollection.xhtml#a3d981d35e2fbd35f64092063871fdef3',·1,·'gmx::SelectionCollection::evaluate()'], 
693 ········['../classgmx_1_1IRestraintPotential.xhtml#abd785aca4a7790377720f445e8263ffb',·1,·'gmx::IRestraintPotential::evaluate()'], 
694 ········['../structt__compiler__data.xhtml#a5128b3f090d5c7fb2eb867570e89fe3b',·1,·'t_compiler_data::evaluate'],692 ····['evaluate_399',·['evaluate',·['../structt__compiler__data.xhtml#a5128b3f090d5c7fb2eb867570e89fe3b',·1,·'t_compiler_data::evaluate'],
695 ········['../classgmx_1_1SelectionEvaluator.xhtml#ad86f6b06a9c14294732430b01329e0af',·1,·'gmx::SelectionEvaluator::evaluate()'], 
696 ········['../classgmx_1_1SelectionTreeElement.xhtml#aa2729334e9625ab9446f87dee5e2acf4',·1,·'gmx::SelectionTreeElement::evaluate'],693 ········['../classgmx_1_1SelectionTreeElement.xhtml#aa2729334e9625ab9446f87dee5e2acf4',·1,·'gmx::SelectionTreeElement::evaluate'],
697 ········['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml#a0601d30a0ad2f0ca3cbdd80929d66ad1',·1,·'gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension::evaluate()'],694 ········['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml#a0601d30a0ad2f0ca3cbdd80929d66ad1',·1,·'gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension::evaluate()'],
698 ········['../classgmx_1_1PullCoordExpressionParser.xhtml#aedf144756d7dd044b691f937f05ed07a',·1,·'gmx::PullCoordExpressionParser::evaluate()']695 ········['../classgmx_1_1PullCoordExpressionParser.xhtml#aedf144756d7dd044b691f937f05ed07a',·1,·'gmx::PullCoordExpressionParser::evaluate()'],
 696 ········['../classgmx_1_1SelectionEvaluator.xhtml#ad86f6b06a9c14294732430b01329e0af',·1,·'gmx::SelectionEvaluator::evaluate()'],
 697 ········['../classgmx_1_1IRestraintPotential.xhtml#abd785aca4a7790377720f445e8263ffb',·1,·'gmx::IRestraintPotential::evaluate()'],
 698 ········['../classgmx_1_1SelectionCollection.xhtml#a3d981d35e2fbd35f64092063871fdef3',·1,·'gmx::SelectionCollection::evaluate()']
699 ····]],699 ····]],
700 ····['evaluate_2ecpp_400',·['evaluate.cpp',·['../evaluate_8cpp.xhtml',·1,·'']]],700 ····['evaluate_2ecpp_400',·['evaluate.cpp',·['../evaluate_8cpp.xhtml',·1,·'']]],
701 ····['evaluate_2eh_401',·['evaluate.h',·['../evaluate_8h.xhtml',·1,·'']]],701 ····['evaluate_2eh_401',·['evaluate.h',·['../evaluate_8h.xhtml',·1,·'']]],
702 ····['evaluate_5fall_402',·['evaluate_all',·['../sm__simple_8cpp.xhtml#ab5d9aaa1591fbf99ef54f35c930d876f',·1,·'sm_simple.cpp']]],702 ····['evaluate_5fall_402',·['evaluate_all',·['../sm__simple_8cpp.xhtml#ab5d9aaa1591fbf99ef54f35c930d876f',·1,·'sm_simple.cpp']]],
703 ····['evaluate_5faltloc_403',·['evaluate_altloc',·['../sm__simple_8cpp.xhtml#ac95693c16cf861f2aba6655c0ff6f0d2',·1,·'sm_simple.cpp']]],703 ····['evaluate_5faltloc_403',·['evaluate_altloc',·['../sm__simple_8cpp.xhtml#ac95693c16cf861f2aba6655c0ff6f0d2',·1,·'sm_simple.cpp']]],
704 ····['evaluate_5fatomname_404',·['evaluate_atomname',·['../sm__simple_8cpp.xhtml#ad8d60c137d3bdb4cc2ef7458abdadfa5',·1,·'sm_simple.cpp']]],704 ····['evaluate_5fatomname_404',·['evaluate_atomname',·['../sm__simple_8cpp.xhtml#ad8d60c137d3bdb4cc2ef7458abdadfa5',·1,·'sm_simple.cpp']]],
705 ····['evaluate_5fatomnr_405',·['evaluate_atomnr',·['../sm__simple_8cpp.xhtml#ac012c9061ab901e7085b9e6be0b0dfb1',·1,·'sm_simple.cpp']]],705 ····['evaluate_5fatomnr_405',·['evaluate_atomnr',·['../sm__simple_8cpp.xhtml#ac012c9061ab901e7085b9e6be0b0dfb1',·1,·'sm_simple.cpp']]],
Offset 739, 42 lines modifiedOffset 739, 42 lines modified
739 ····['evaluate_5fsingle_439',·['evaluate_single',·['../pairs_8cpp.xhtml#a53338e7f9d3499aabdf8f25c6af5f238',·1,·'pairs.cpp']]],739 ····['evaluate_5fsingle_439',·['evaluate_single',·['../pairs_8cpp.xhtml#a53338e7f9d3499aabdf8f25c6af5f238',·1,·'pairs.cpp']]],
740 ····['evaluate_5fwithin_440',·['evaluate_within',·['../sm__distance_8cpp.xhtml#a085423b7b3380c50dc2c2aa0042070fe',·1,·'sm_distance.cpp']]],740 ····['evaluate_5fwithin_440',·['evaluate_within',·['../sm__distance_8cpp.xhtml#a085423b7b3380c50dc2c2aa0042070fe',·1,·'sm_distance.cpp']]],
741 ····['evaluate_5fx_441',·['evaluate_x',·['../sm__simple_8cpp.xhtml#ab0e74f5a11a8275423b617bbc8d247dc',·1,·'sm_simple.cpp']]],741 ····['evaluate_5fx_441',·['evaluate_x',·['../sm__simple_8cpp.xhtml#ab0e74f5a11a8275423b617bbc8d247dc',·1,·'sm_simple.cpp']]],
742 ····['evaluate_5fy_442',·['evaluate_y',·['../sm__simple_8cpp.xhtml#ac7586817f1b4032087aa7b625224757c',·1,·'sm_simple.cpp']]],742 ····['evaluate_5fy_442',·['evaluate_y',·['../sm__simple_8cpp.xhtml#ac7586817f1b4032087aa7b625224757c',·1,·'sm_simple.cpp']]],
743 ····['evaluate_5fz_443',·['evaluate_z',·['../sm__simple_8cpp.xhtml#ac69865bb371f6f50ed83c06fb0cf5531',·1,·'sm_simple.cpp']]],743 ····['evaluate_5fz_443',·['evaluate_z',·['../sm__simple_8cpp.xhtml#ac69865bb371f6f50ed83c06fb0cf5531',·1,·'sm_simple.cpp']]],
744 ····['evaluatecontractionpoint_444',·['evaluateContractionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a46d235715a1174267e45aebae8beb0c7',·1,·'gmx::NelderMeadSimplex']]],744 ····['evaluatecontractionpoint_444',·['evaluateContractionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a46d235715a1174267e45aebae8beb0c7',·1,·'gmx::NelderMeadSimplex']]],
745 ····['evaluated_445',·['Evaluated',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7ad603de8be2ed385509ef70a6c0099623',·1,·'gmx::SelectionCollection::Impl']]],745 ····['evaluated_445',·['Evaluated',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7ad603de8be2ed385509ef70a6c0099623',·1,·'gmx::SelectionCollection::Impl']]],
746 ····['evaluatederivative_446',·['evaluatederivative',·['../classgmx_1_1CubicSplineTable.xhtml#af581c2c1b906e3c0f6575712d6baef44',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'], 
747 ········['../classgmx_1_1CubicSplineTable.xhtml#a0422a9e17f991f1c4508e1dbae62d400',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1)·const'], 
748 ········['../classgmx_1_1CubicSplineTable.xhtml#a6fe320240e2c63165d04f1118235840e',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1,·T·*derivativeValue2)·const'], 
749 ········['../classgmx_1_1QuadraticSplineTable.xhtml#aa9e7cfaa0780aa00db5a67b62ea03a38',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'],746 ····['evaluatederivative_446',·['evaluatederivative',·['../classgmx_1_1QuadraticSplineTable.xhtml#aa9e7cfaa0780aa00db5a67b62ea03a38',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'],
 747 ········['../classgmx_1_1QuadraticSplineTable.xhtml#afb93e2ab60eb02c1b9ea5b93eb6c43b8',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2,·T·*derivativeValue3)·const'],
750 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a293c4b989907dd4bd628b72a46735e81',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2)·const'],748 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a293c4b989907dd4bd628b72a46735e81',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2)·const'],
751 ········['../classgmx_1_1QuadraticSplineTable.xhtml#afb93e2ab60eb02c1b9ea5b93eb6c43b8',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2,·T·*derivativeValue3)·const']749 ········['../classgmx_1_1CubicSplineTable.xhtml#a6fe320240e2c63165d04f1118235840e',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1,·T·*derivativeValue2)·const'],
 750 ········['../classgmx_1_1CubicSplineTable.xhtml#a0422a9e17f991f1c4508e1dbae62d400',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1)·const'],
 751 ········['../classgmx_1_1CubicSplineTable.xhtml#af581c2c1b906e3c0f6575712d6baef44',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const']
752 ····]],752 ····]],
753 ····['evaluateexpansionpoint_447',·['evaluateExpansionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a5d83a966145a4b49ccabcbc47b9c4df1',·1,·'gmx::NelderMeadSimplex']]],753 ····['evaluateexpansionpoint_447',·['evaluateExpansionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a5d83a966145a4b49ccabcbc47b9c4df1',·1,·'gmx::NelderMeadSimplex']]],
754 ····['evaluatefinal_448',·['evaluatefinal',·['../classgmx_1_1SelectionEvaluator.xhtml#a6d5202a595b0183631ba627d726f85c1',·1,·'gmx::SelectionEvaluator::evaluateFinal()'],754 ····['evaluatefinal_448',·['evaluatefinal',·['../classgmx_1_1SelectionEvaluator.xhtml#a6d5202a595b0183631ba627d726f85c1',·1,·'gmx::SelectionEvaluator::evaluateFinal()'],
755 ········['../classgmx_1_1SelectionCollection.xhtml#aeb8069b1be3abd49bad0a1431f91ad7c',·1,·'gmx::SelectionCollection::evaluateFinal()']755 ········['../classgmx_1_1SelectionCollection.xhtml#aeb8069b1be3abd49bad0a1431f91ad7c',·1,·'gmx::SelectionCollection::evaluateFinal()']
756 ····]],756 ····]],
757 ····['evaluateforce_449',·['evaluateforce',·['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#a94d7bc3daea70ddad195019ed87e5956',·1,·'gmx::DensityFittingForce::Impl::evaluateForce()'],757 ····['evaluateforce_449',·['evaluateforce',·['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#a94d7bc3daea70ddad195019ed87e5956',·1,·'gmx::DensityFittingForce::Impl::evaluateForce()'],
758 ········['../classgmx_1_1DensityFittingForce.xhtml#a48de58358220847863465808b507fd2e',·1,·'gmx::DensityFittingForce::evaluateForce()']758 ········['../classgmx_1_1DensityFittingForce.xhtml#a48de58358220847863465808b507fd2e',·1,·'gmx::DensityFittingForce::evaluateForce()']
759 ····]],759 ····]],
760 ····['evaluateforces_450',·['evaluateForces',·['../classgmx_1_1SelectionOption.xhtml#ab1969e91ec57a1282b5e796800389933',·1,·'gmx::SelectionOption']]],760 ····['evaluateforces_450',·['evaluateForces',·['../classgmx_1_1SelectionOption.xhtml#ab1969e91ec57a1282b5e796800389933',·1,·'gmx::SelectionOption']]],
761 ····['evaluatefunction_451',·['evaluatefunction',·['../classgmx_1_1QuadraticSplineTable.xhtml#a55a6e8f12773a991d4fbe47ef10a8b7a',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2,·T·*functionValue3)·const'], 
762 ········['../classgmx_1_1QuadraticSplineTable.xhtml#abef6fe237259c1d7e518f29a03c191eb',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2)·const'], 
763 ········['../classgmx_1_1CubicSplineTable.xhtml#a624d2f3c7e52adcf7408d4da520b7859',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],761 ····['evaluatefunction_451',·['evaluatefunction',·['../classgmx_1_1CubicSplineTable.xhtml#a624d2f3c7e52adcf7408d4da520b7859',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],
764 ········['../classgmx_1_1CubicSplineTable.xhtml#a44e659de3e6604fa3ee01cb1422a504f',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1)·const'],762 ········['../classgmx_1_1CubicSplineTable.xhtml#a44e659de3e6604fa3ee01cb1422a504f',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1)·const'],
765 ········['../classgmx_1_1CubicSplineTable.xhtml#a2b6951128e8311ceb8afff6ce7fead36',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1,·T·*functionValue2)·const'],763 ········['../classgmx_1_1CubicSplineTable.xhtml#a2b6951128e8311ceb8afff6ce7fead36',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1,·T·*functionValue2)·const'],
766 ········['../classgmx_1_1QuadraticSplineTable.xhtml#af9aca690a0ee92af501c865d7a8e5044',·1,·'gmx::QuadraticSplineTable::evaluateFunction()']764 ········['../classgmx_1_1QuadraticSplineTable.xhtml#af9aca690a0ee92af501c865d7a8e5044',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],
 765 ········['../classgmx_1_1QuadraticSplineTable.xhtml#abef6fe237259c1d7e518f29a03c191eb',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2)·const'],
 766 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a55a6e8f12773a991d4fbe47ef10a8b7a',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2,·T·*functionValue3)·const']
767 ····]],767 ····]],
768 ····['evaluatefunctionandderivative_452',·['evaluatefunctionandderivative',·['../classgmx_1_1CubicSplineTable.xhtml#a7313f61a65dfedf8359dbb362c111a5f',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],768 ····['evaluatefunctionandderivative_452',·['evaluatefunctionandderivative',·['../classgmx_1_1CubicSplineTable.xhtml#ac93d0b5e34f7942ca98b2d44d40b3ea1',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],
769 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a1829af258b70b6ed03822f07aff0190f',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue,·T·*derivativeValue)·const'], 
770 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a6b70a811af8bd4f953ec5f668412bbaf',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2)·const'], 
771 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a155411b2d94d1728b95d4dba7755e3d7',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2,·T·*functionValue3,·T·*derivativeValue3)·const'],769 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a155411b2d94d1728b95d4dba7755e3d7',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2,·T·*functionValue3,·T·*derivativeValue3)·const'],
 770 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a6b70a811af8bd4f953ec5f668412bbaf',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2)·const'],
772 ········['../classgmx_1_1CubicSplineTable.xhtml#a863c0191a73cfea35178858ff3584bcf',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue0,·T·*derivativeValue0,·T·*functionValue1,·T·*derivativeValue1)·const'],771 ········['../classgmx_1_1CubicSplineTable.xhtml#a863c0191a73cfea35178858ff3584bcf',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],
773 ········['../classgmx_1_1CubicSplineTable.xhtml#ac93d0b5e34f7942ca98b2d44d40b3ea1',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue,·T·*derivativeValue)·const']772 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a1829af258b70b6ed03822f07aff0190f',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative()'],
 773 ········['../classgmx_1_1CubicSplineTable.xhtml#a7313f61a65dfedf8359dbb362c111a5f',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()']
774 ····]],774 ····]],
775 ····['evaluatehelpervalues_453',·['evaluateHelperValues',·['../namespacegmx_1_1anonymous__namespace_02densityfit_8cpp_03.xhtml#a6d5392693f1b404bb92e47d63f77d090',·1,·'gmx::anonymous_namespace{densityfit.cpp}']]],775 ····['evaluatehelpervalues_453',·['evaluateHelperValues',·['../namespacegmx_1_1anonymous__namespace_02densityfit_8cpp_03.xhtml#a6d5392693f1b404bb92e47d63f77d090',·1,·'gmx::anonymous_namespace{densityfit.cpp}']]],
776 ····['evaluatemodel_454',·['evaluatemodel',·['../classgmx_1_1TorchModel.xhtml#a5044f053732fd2c28df26c1626f07bff',·1,·'gmx::TorchModel::evaluateModel()'],776 ····['evaluatemodel_454',·['evaluatemodel',·['../classgmx_1_1TorchModel.xhtml#a5044f053732fd2c28df26c1626f07bff',·1,·'gmx::TorchModel::evaluateModel()'],
777 ········['../classgmx_1_1INNPotModel.xhtml#ac41875649affd1941e519b7a671d3703',·1,·'gmx::INNPotModel::evaluateModel()']777 ········['../classgmx_1_1INNPotModel.xhtml#ac41875649affd1941e519b7a671d3703',·1,·'gmx::INNPotModel::evaluateModel()']
778 ····]],778 ····]],
779 ····['evaluatereflectionpoint_455',·['evaluateReflectionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a55452c154211b3eb0dc5c101e35033aa',·1,·'gmx::NelderMeadSimplex']]],779 ····['evaluatereflectionpoint_455',·['evaluateReflectionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a55452c154211b3eb0dc5c101e35033aa',·1,·'gmx::NelderMeadSimplex']]],
780 ····['evaluateshifttobox_456',·['evaluateShiftToBox',·['../namespacegmx_1_1anonymous__namespace_02com_8cpp_03.xhtml#a68f25f4d5b5426c3ebaf29d7c16dc72f',·1,·'gmx::anonymous_namespace{com.cpp}']]],780 ····['evaluateshifttobox_456',·['evaluateShiftToBox',·['../namespacegmx_1_1anonymous__namespace_02com_8cpp_03.xhtml#a68f25f4d5b5426c3ebaf29d7c16dc72f',·1,·'gmx::anonymous_namespace{com.cpp}']]],
Offset 788, 28 lines modifiedOffset 788, 28 lines modified
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135 ····['filenamelist_87',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],135 ····['filenamelist_87',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],
136 ····['filenameoption_88',·['filenameoption',·['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'],136 ····['filenameoption_88',·['filenameoption',·['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'],
137 ········['../classgmx_1_1FileNameOption.xhtml#a4057766b5851a4d02b3913f1984b3891',·1,·'gmx::FileNameOption::FileNameOption()']137 ········['../classgmx_1_1FileNameOption.xhtml#a4057766b5851a4d02b3913f1984b3891',·1,·'gmx::FileNameOption::FileNameOption()']
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151 ····['filenameoptionstorage_95',·['filenameoptionstorage',·['../classgmx_1_1FileNameOptionStorage.xhtml#ae371defde227f55e1b6a4753301bcc5d',·1,·'gmx::FileNameOptionStorage::FileNameOptionStorage()'],152 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ae371defde227f55e1b6a4753301bcc5d',·1,·'gmx::FileNameOptionStorage::FileNameOptionStorage()'],
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162 ····['filenmtooptions_100',·['filenmToOptions',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#ac1a3bfed6848a6f9cb6fa3d94f1f1823',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter']]],162 ····['filenmtooptions_100',·['filenmToOptions',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#ac1a3bfed6848a6f9cb6fa3d94f1f1823',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter']]],
163 ····['fileoptionflagsasstring_101',·['fileOptionFlagsAsString',·['../group__module__commandline.xhtml#ga154ea0c7090cb0af81ce284fcec7a65a',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}']]],163 ····['fileoptionflagsasstring_101',·['fileOptionFlagsAsString',·['../group__module__commandline.xhtml#ga154ea0c7090cb0af81ce284fcec7a65a',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}']]],
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172 ····['filetype_110',·['filetype',·['../classgmx_1_1FileNameOption.xhtml#a87a724f8f040dc29668e33f39bb2d86b',·1,·'gmx::FileNameOption']]],172 ····['filetype_110',·['filetype',·['../classgmx_1_1FileNameOption.xhtml#a87a724f8f040dc29668e33f39bb2d86b',·1,·'gmx::FileNameOption']]],
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65 ········['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology(int·logicalProcessorCount)'],65 ········['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology(int·logicalProcessorCount)'],
66 ········['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::string·&amp;filesystemRoot,·const·std::vector&lt;·int·&gt;·&amp;allowedProcessors)'],66 ········['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::string·&amp;filesystemRoot,·const·std::vector&lt;·int·&gt;·&amp;allowedProcessors)'],
67 ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map&lt;·int,·std::array&lt;·int,·3·&gt;·&gt;·&amp;logicalProcessorIdMap,·const·std::string·&amp;filesystemRoot)']67 ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map&lt;·int,·std::array&lt;·int,·3·&gt;·&gt;·&amp;logicalProcessorIdMap,·const·std::string·&amp;filesystemRoot)']
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279 ····['helptopicpointer_202',·['HelpTopicPointer',·['../namespacegmx.xhtml#abb455c7711ece592606e70a093ff80b4',·1,·'gmx']]],279 ····['helptopicpointer_202',·['HelpTopicPointer',·['../namespacegmx.xhtml#abb455c7711ece592606e70a093ff80b4',·1,·'gmx']]],
 280 ····['helpwritercontext_203',·['helpwritercontext',·['../classgmx_1_1HelpWriterContext.xhtml#ab17b32ad5802855990bd79ae6ada94b4',·1,·'gmx::HelpWriterContext::HelpWriterContext()'],
280 ····['helpwritercontext_203',·['helpwritercontext',·['../classgmx_1_1HelpLinks.xhtml#a734bf51c01e151da043a218f686b5114',·1,·'gmx::HelpLinks::HelpWriterContext'],281 ········['../classgmx_1_1HelpLinks.xhtml#a734bf51c01e151da043a218f686b5114',·1,·'gmx::HelpLinks::HelpWriterContext'],
281 ········['../classgmx_1_1HelpWriterContext.xhtml#ab17b32ad5802855990bd79ae6ada94b4',·1,·'gmx::HelpWriterContext::HelpWriterContext(TextWriter·*writer,·HelpOutputFormat·format)'], 
282 ········['../classgmx_1_1HelpWriterContext.xhtml#a9cc36f78e38c772e52c4cdc73cf18d7c',·1,·'gmx::HelpWriterContext::HelpWriterContext(TextWriter·*writer,·HelpOutputFormat·format,·const·HelpLinks·*links)'],282 ········['../classgmx_1_1HelpWriterContext.xhtml#a9cc36f78e38c772e52c4cdc73cf18d7c',·1,·'gmx::HelpWriterContext::HelpWriterContext(TextWriter·*writer,·HelpOutputFormat·format,·const·HelpLinks·*links)'],
283 ········['../classgmx_1_1HelpWriterContext.xhtml#ae1e18511b3fea03259da87cceb160ef0',·1,·'gmx::HelpWriterContext::HelpWriterContext(const·HelpWriterContext·&amp;other)'],283 ········['../classgmx_1_1HelpWriterContext.xhtml#ae1e18511b3fea03259da87cceb160ef0',·1,·'gmx::HelpWriterContext::HelpWriterContext(const·HelpWriterContext·&amp;other)'],
284 ········['../classgmx_1_1HelpWriterContext.xhtml',·1,·'gmx::HelpWriterContext']284 ········['../classgmx_1_1HelpWriterContext.xhtml',·1,·'gmx::HelpWriterContext']
285 ····]],285 ····]],
286 ····['helpwritercontext_2ecpp_204',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],286 ····['helpwritercontext_2ecpp_204',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
287 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']287 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
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18 ····['ibm_5fvsx_8',·['ibm_vsx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085ae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::CpuInfo::Ibm_Vsx'],18 ····['ibm_5fvsx_8',·['ibm_vsx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085ae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::CpuInfo::Ibm_Vsx'],
19 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0cae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::Ibm_Vsx']19 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0cae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::Ibm_Vsx']
20 ····]],20 ····]],
21 ····['iboundingboxes_9',·['iBoundingBoxes',·['../classgmx_1_1Grid.xhtml#a87f30fcfe19f2ca46dfa1b01022cfa0e',·1,·'gmx::Grid']]],21 ····['iboundingboxes_9',·['iBoundingBoxes',·['../classgmx_1_1Grid.xhtml#a87f30fcfe19f2ca46dfa1b01022cfa0e',·1,·'gmx::Grid']]],
22 ····['ibuf_10',·['ibuf',·['../structgmx__domdec__specat__comm__t.xhtml#a36d1c0d8de4316bf2bff59153a1f6fd0',·1,·'gmx_domdec_specat_comm_t']]],22 ····['ibuf_10',·['ibuf',·['../structgmx__domdec__specat__comm__t.xhtml#a36d1c0d8de4316bf2bff59153a1f6fd0',·1,·'gmx_domdec_specat_comm_t']]],
23 ····['icheckpointhelperclient_11',·['ICheckpointHelperClient',·['../classgmx_1_1ICheckpointHelperClient.xhtml',·1,·'gmx']]],23 ····['icheckpointhelperclient_11',·['ICheckpointHelperClient',·['../classgmx_1_1ICheckpointHelperClient.xhtml',·1,·'gmx']]],
24 ····['iclusterdata_12',·['iclusterdata',·['../structgmx_1_1NbnxmPairlistCpuWork_1_1IClusterData.xhtml',·1,·'gmx::NbnxmPairlistCpuWork::IClusterData'], 
25 ········['../structgmx_1_1NbnxmPairlistCpuWork.xhtml#afea3b79a3fe05a7e5d526bc64c7ff1be',·1,·'gmx::NbnxmPairlistCpuWork::iClusterData']24 ····['iclusterdata_12',·['iclusterdata',·['../structgmx_1_1NbnxmPairlistCpuWork.xhtml#afea3b79a3fe05a7e5d526bc64c7ff1be',·1,·'gmx::NbnxmPairlistCpuWork::iClusterData'],
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27 ····['iclustersizeperlisttype_13',·['IClusterSizePerListType',·['../namespacegmx.xhtml#a99b3d22e099bc359f1328352a68e7539',·1,·'gmx']]],27 ····['iclustersizeperlisttype_13',·['IClusterSizePerListType',·['../namespacegmx.xhtml#a99b3d22e099bc359f1328352a68e7539',·1,·'gmx']]],
28 ····['icommandlinemodule_14',·['ICommandLineModule',·['../classgmx_1_1ICommandLineModule.xhtml',·1,·'gmx']]],28 ····['icommandlinemodule_14',·['ICommandLineModule',·['../classgmx_1_1ICommandLineModule.xhtml',·1,·'gmx']]],
29 ····['icommandlineoptionsmodule_15',·['ICommandLineOptionsModule',·['../classgmx_1_1ICommandLineOptionsModule.xhtml',·1,·'gmx']]],29 ····['icommandlineoptionsmodule_15',·['ICommandLineOptionsModule',·['../classgmx_1_1ICommandLineOptionsModule.xhtml',·1,·'gmx']]],
30 ····['icommandlineoptionsmodulepointer_16',·['ICommandLineOptionsModulePointer',·['../namespacegmx.xhtml#a682ce4a779fde44ee633b8648eeafe87',·1,·'gmx']]],30 ····['icommandlineoptionsmodulepointer_16',·['ICommandLineOptionsModulePointer',·['../namespacegmx.xhtml#a682ce4a779fde44ee633b8648eeafe87',·1,·'gmx']]],
31 ····['icommandlineoptionsmodulesettings_17',·['ICommandLineOptionsModuleSettings',·['../classgmx_1_1ICommandLineOptionsModuleSettings.xhtml',·1,·'gmx']]],31 ····['icommandlineoptionsmodulesettings_17',·['ICommandLineOptionsModuleSettings',·['../classgmx_1_1ICommandLineOptionsModuleSettings.xhtml',·1,·'gmx']]],
32 ····['id_18',·['id',·['../structgmx_1_1HardwareTopology_1_1ProcessingUnit.xhtml#aec42b65b2d21b58f6bd27ff19205a538',·1,·'gmx::HardwareTopology::ProcessingUnit::id'],32 ····['id_18',·['id',·['../structgmx_1_1HardwareTopology_1_1ProcessingUnit.xhtml#aec42b65b2d21b58f6bd27ff19205a538',·1,·'gmx::HardwareTopology::ProcessingUnit::id'],
33 ········['../structgmx_1_1HardwareTopology_1_1Core.xhtml#a8e9bad14d30ae3f81b8cc13b750c2176',·1,·'gmx::HardwareTopology::Core::id'],33 ········['../structgmx_1_1HardwareTopology_1_1Core.xhtml#a8e9bad14d30ae3f81b8cc13b750c2176',·1,·'gmx::HardwareTopology::Core::id'],
34 ········['../structgmx_1_1HardwareTopology_1_1Package.xhtml#a8a3df986a213d53070f5750b8e1738a1',·1,·'gmx::HardwareTopology::Package::id'],34 ········['../structgmx_1_1HardwareTopology_1_1Package.xhtml#a8a3df986a213d53070f5750b8e1738a1',·1,·'gmx::HardwareTopology::Package::id'],
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35 ········['../structgmx_1_1HardwareTopology_1_1NumaNode.xhtml#a1042d00c9db62e9d8f22a63403372acb',·1,·'gmx::HardwareTopology::NumaNode::id'],36 ········['../structgmx_1_1HardwareTopology_1_1NumaNode.xhtml#a1042d00c9db62e9d8f22a63403372acb',·1,·'gmx::HardwareTopology::NumaNode::id'],
36 ········['../classgmx_1_1SelectionTreeElement.xhtml#a46dfcd0739945171790e29857f14ce0a',·1,·'gmx::SelectionTreeElement::id'],37 ········['../classgmx_1_1SelectionTreeElement.xhtml#a46dfcd0739945171790e29857f14ce0a',·1,·'gmx::SelectionTreeElement::id'],
37 ········['../classgmx_1_1test_1_1TestDevice.xhtml#a842bd593d3c47d3522470a3be45a862d',·1,·'gmx::test::TestDevice::id()'], 
38 ········['../structDeviceInformation.xhtml#aef9ad6fdaf54d7176c07482afc323dbf',·1,·'DeviceInformation::id']38 ········['../structDeviceInformation.xhtml#aef9ad6fdaf54d7176c07482afc323dbf',·1,·'DeviceInformation::id']
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41 ····['idef_20',·['idef',·['../structgmx__localtop__t.xhtml#af5ed39749ac3708c36eed4209736cce2',·1,·'gmx_localtop_t::idef'],42 ········['../structgmx__localtop__t.xhtml#af5ed39749ac3708c36eed4209736cce2',·1,·'gmx_localtop_t::idef']
42 ········['../structthread__work__t.xhtml#a5d30701a3c72c500069bc8e9e110c076',·1,·'thread_work_t::idef'] 
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45 ····['idef_2eh_22',·['idef.h',·['../idef_8h.xhtml',·1,·'']]],45 ····['idef_2eh_22',·['idef.h',·['../idef_8h.xhtml',·1,·'']]],
46 ····['identifyavx512fmaunits_23',·['identifyAvx512FmaUnits',·['../namespacegmx.xhtml#a6edee513f8fdeaffb9094124f58ba270',·1,·'gmx']]],46 ····['identifyavx512fmaunits_23',·['identifyAvx512FmaUnits',·['../namespacegmx.xhtml#a6edee513f8fdeaffb9094124f58ba270',·1,·'gmx']]],
47 ····['identifyavx512fmaunits_2ecpp_24',·['identifyavx512fmaunits.cpp',·['../identifyavx512fmaunits_8cpp.xhtml',·1,·'']]],47 ····['identifyavx512fmaunits_2ecpp_24',·['identifyavx512fmaunits.cpp',·['../identifyavx512fmaunits_8cpp.xhtml',·1,·'']]],
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324 ····['loadu1dualhsimd_230',·['loadu1dualhsimd',·['../group__module__simd.xhtml#ga037b15ee8ff585453423ae4c8e061d7c',·1,·'gmx::loadU1DualHsimd(const·double·*m)'],324 ····['loadu1dualhsimd_230',·['loadu1dualhsimd',·['../group__module__simd.xhtml#ga037b15ee8ff585453423ae4c8e061d7c',·1,·'gmx::loadU1DualHsimd(const·double·*m)'],
325 ········['../group__module__simd.xhtml#gab2f2cb5527d6f6dcdefbec1592207da5',·1,·'gmx::loadU1DualHsimd(const·float·*m)']325 ········['../group__module__simd.xhtml#gab2f2cb5527d6f6dcdefbec1592207da5',·1,·'gmx::loadU1DualHsimd(const·float·*m)']
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328 ········['../group__module__simd.xhtml#ga5d2166ee15a19367373fdbe5ca180dc4',·1,·'gmx::loadU4NOffset(const·float·*m,·int·offset)']328 ········['../group__module__simd.xhtml#ga5d2166ee15a19367373fdbe5ca180dc4',·1,·'gmx::loadU4NOffset(const·float·*m,·int·offset)']
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330 ····['loadunduplicate4_232',·['loadunduplicate4',·['../group__module__simd.xhtml#ga48240220eea9e0812731ec802ffec596',·1,·'gmx::loadUNDuplicate4(const·double·*m)'],331 ········['../group__module__simd.xhtml#ga48240220eea9e0812731ec802ffec596',·1,·'gmx::loadUNDuplicate4(const·double·*m)']
331 ········['../group__module__simd.xhtml#ga2c940b444e69a8b8ace1f4edb676712b',·1,·'gmx::loadUNDuplicate4(const·float·*m)'] 
332 ····]],332 ····]],
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333 ····['local_233',·['local',·['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],334 ········['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],
334 ········['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],335 ········['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548a509820290d57f333403f490dde7316f4',·1,·'gmx::Local']
335 ········['../structAtomIndexSet.xhtml#afff60fdcd71337e0d1741f135dd914d9',·1,·'AtomIndexSet::local'] 
336 ····]],336 ····]],
337 ····['localatomordermatchesnbnxmorder_234',·['localatomordermatchesnbnxmorder',·['../classgmx_1_1GridSet.xhtml#a9836c0e4b9182d580e946598f18f3c7f',·1,·'gmx::GridSet::localAtomOrderMatchesNbnxmOrder()'],337 ····['localatomordermatchesnbnxmorder_234',·['localatomordermatchesnbnxmorder',·['../classgmx_1_1GridSet.xhtml#a9836c0e4b9182d580e946598f18f3c7f',·1,·'gmx::GridSet::localAtomOrderMatchesNbnxmOrder()'],
338 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#a83d8dac6f717c789f5810ef21cb0c176',·1,·'gmx::nonbonded_verlet_t::localAtomOrderMatchesNbnxmOrder()']338 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#a83d8dac6f717c789f5810ef21cb0c176',·1,·'gmx::nonbonded_verlet_t::localAtomOrderMatchesNbnxmOrder()']
339 ····]],339 ····]],
340 ····['localatomset_235',·['localatomset',·['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'],340 ····['localatomset_235',·['localatomset',·['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'],
341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']
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343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],
344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],
345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],
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347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],
348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']
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351 ········['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']351 ········['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
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354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],
355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],
356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],
357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],
358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],
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Offset 5, 22 lines modifiedOffset 5, 22 lines modified
5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],
6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],
8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],
9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],
10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],
23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],
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Offset 26, 20 lines modifiedOffset 26, 20 lines modified
26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],
27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],
28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],
29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],
30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],
37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],
41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],
42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],
43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],
44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],
45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],
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29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']
30 ····]],30 ····]],
31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'],39 ····['requirements_2eh_29',·['requirements.h',·['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'],
40 ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)']40 ········['../requirements_8h.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],
46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],
47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],
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Offset 63, 16 lines modifiedOffset 63, 16 lines modified
63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],
69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],
70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],
74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],
75 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']75 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']
76 ····]],76 ····]],
77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],
78 ····['settle_2ecpp_60',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['settle_2ecpp_60',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
Offset 92, 16 lines modifiedOffset 92, 16 lines modified
92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],
93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],
94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],
95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],
96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],
97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],
98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],
99 ····['simd_2eh_79',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)'],99 ····['simd_2eh_79',·['simd.h',·['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)'],
100 ········['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)']100 ········['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)']
101 ····]],101 ····]],
102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],
103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],
104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],
105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],
106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],
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Offset 20, 11 lines modifiedOffset 20, 11 lines modified
20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],
23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],
27 ····['utility_2eh_21',·['utility.h',·['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],27 ····['utility_2eh_21',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'],
28 ········['../utility_8h.xhtml',·1,·'(Global·Namespace)']28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)']
29 ····]]29 ····]]
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47 ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)']47 ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)']
48 ····]],48 ····]],
49 ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]],49 ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]],
50 ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'],50 ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
51 ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)']51 ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)']
52 ····]],52 ····]],
53 ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]],53 ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]],
54 ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'],54 ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'],
55 ········['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)']55 ········['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)']
56 ····]],56 ····]],
57 ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]],57 ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]],
58 ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]],58 ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]],
59 ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]],59 ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]],
60 ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]],60 ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]],
61 ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]],61 ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]],
62 ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]],62 ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]],
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20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],
21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],
22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],
23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],
24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],
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123 ····['domdec_5fstruct_2eh_103',·['domdec_struct.h',·['../domdec__struct_8h.xhtml',·1,·'']]],123 ····['domdec_5fstruct_2eh_103',·['domdec_struct.h',·['../domdec__struct_8h.xhtml',·1,·'']]],
124 ····['domdec_5fvsite_2ecpp_104',·['domdec_vsite.cpp',·['../domdec__vsite_8cpp.xhtml',·1,·'']]],124 ····['domdec_5fvsite_2ecpp_104',·['domdec_vsite.cpp',·['../domdec__vsite_8cpp.xhtml',·1,·'']]],
125 ····['domdec_5fvsite_2eh_105',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],125 ····['domdec_5fvsite_2eh_105',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],
126 ····['domdec_5fzones_2ecpp_106',·['domdec_zones.cpp',·['../domdec__zones_8cpp.xhtml',·1,·'']]],126 ····['domdec_5fzones_2ecpp_106',·['domdec_zones.cpp',·['../domdec__zones_8cpp.xhtml',·1,·'']]],
127 ····['domdec_5fzones_2eh_107',·['domdec_zones.h',·['../domdec__zones_8h.xhtml',·1,·'']]],127 ····['domdec_5fzones_2eh_107',·['domdec_zones.h',·['../domdec__zones_8h.xhtml',·1,·'']]],
128 ····['domdechelper_2ecpp_108',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],128 ····['domdechelper_2ecpp_108',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],
129 ····['domdechelper_2eh_109',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],129 ····['domdechelper_2eh_109',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],
130 ····['dssp_2ecpp_110',·['dssp.cpp',·['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],130 ····['dssp_2ecpp_110',·['dssp.cpp',·['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],
131 ········['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']131 ········['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']
132 ····]],132 ····]],
133 ····['dssp_2eh_111',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],133 ····['dssp_2eh_111',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],
134 ····['dump_2ecpp_112',·['dump.cpp',·['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],134 ····['dump_2ecpp_112',·['dump.cpp',·['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
135 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],135 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
136 ········['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']136 ········['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']
137 ····]],137 ····]],
138 ····['dump_2eh_113',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]138 ····['dump_2eh_113',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]
139 ];139 ];
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7 ····['electricfield_2eh_3',·['electricfield.h',·['../electricfield_8h.xhtml',·1,·'']]],7 ····['electricfield_2eh_3',·['electricfield.h',·['../electricfield_8h.xhtml',·1,·'']]],
8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],
9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],
10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],
15 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']
16 ····]],16 ····]],
17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],
18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],
19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],
20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],
24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],
25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],
26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
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27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],
34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],
38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],
39 ····['histogram_2ecpp_25',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],39 ····['histogram_2ecpp_25',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
40 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']40 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['histogram_2eh_26',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],42 ····['histogram_2eh_26',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],
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63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],
64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],
76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
82 ····]],82 ····]],
83 ····['nnpottopologypreprocessor_2eh_69',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],83 ····['nnpottopologypreprocessor_2eh_69',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],
84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],
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Offset 14, 16 lines modifiedOffset 14, 16 lines modified
14 ····['pairlistparams_2ecpp_10',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],14 ····['pairlistparams_2ecpp_10',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],
15 ····['pairlistparams_2eh_11',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],15 ····['pairlistparams_2eh_11',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],
16 ····['pairlistset_2ecpp_12',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],16 ····['pairlistset_2ecpp_12',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],
17 ····['pairlistset_2eh_13',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],17 ····['pairlistset_2eh_13',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
18 ····['pairlistsets_2eh_14',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],18 ····['pairlistsets_2eh_14',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
19 ····['pairlistwork_2ecpp_15',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],19 ····['pairlistwork_2ecpp_15',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],
20 ····['pairlistwork_2eh_16',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],20 ····['pairlistwork_2eh_16',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],
21 ····['pairs_2ecpp_17',·['pairs.cpp',·['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],21 ····['pairs_2ecpp_17',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],
22 ········['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)']22 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']
23 ····]],23 ····]],
24 ····['pairs_2eh_18',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],24 ····['pairs_2eh_18',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],
25 ····['pairsearch_2ecpp_19',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],25 ····['pairsearch_2ecpp_19',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],
26 ····['pairsearch_2eh_20',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],26 ····['pairsearch_2eh_20',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],
27 ····['paralleloptions_2eh_21',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],27 ····['paralleloptions_2eh_21',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
28 ····['params_2ecpp_22',·['params.cpp',·['../params_8cpp.xhtml',·1,·'']]],28 ····['params_2ecpp_22',·['params.cpp',·['../params_8cpp.xhtml',·1,·'']]],
29 ····['pargs_2ecpp_23',·['pargs.cpp',·['../tests_2pargs_8cpp.xhtml',·1,·'']]],29 ····['pargs_2ecpp_23',·['pargs.cpp',·['../tests_2pargs_8cpp.xhtml',·1,·'']]],
Offset 31, 27 lines modifiedOffset 31, 27 lines modified
31 ····['parrinellorahmanbarostat_2ecpp_25',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],31 ····['parrinellorahmanbarostat_2ecpp_25',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],
32 ····['parrinellorahmanbarostat_2eh_26',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],32 ····['parrinellorahmanbarostat_2eh_26',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],
33 ····['parser_5finternal_2eh_27',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],33 ····['parser_5finternal_2eh_27',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],
34 ····['parsetree_2ecpp_28',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],34 ····['parsetree_2ecpp_28',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],
35 ····['parsetree_2eh_29',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],35 ····['parsetree_2eh_29',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],
36 ····['partition_2ecpp_30',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],36 ····['partition_2ecpp_30',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],
37 ····['partition_2eh_31',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],37 ····['partition_2eh_31',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],
38 ····['path_2ecpp_32',·['path.cpp',·['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['path_2ecpp_32',·['path.cpp',·['../path_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../path_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['path_2eh_33',·['path.h',·['../path_8h.xhtml',·1,·'']]],41 ····['path_2eh_33',·['path.h',·['../path_8h.xhtml',·1,·'']]],
42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],
48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],
49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],
50 ········['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']50 ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']
51 ····]],51 ····]],
52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],
53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],
54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],
55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],
56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],
57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],
Offset 74, 16 lines modifiedOffset 74, 16 lines modified
74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],
75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],
76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],
77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],
80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
81 ····['pme_2ecpp_67',·['pme.cpp',·['../pme_8cpp.xhtml',·1,·'(Global·Namespace)'],81 ····['pme_2ecpp_67',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
82 ········['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)']82 ········['../pme_8cpp.xhtml',·1,·'(Global·Namespace)']
83 ····]],83 ····]],
84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],
85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],
86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],
87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],
88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],
89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],
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Offset 12, 15 lines modifiedOffset 12, 15 lines modified
12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
13 ····]],13 ····]],
14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
17 ····]],17 ····]],
18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],
19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
20 ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
22 ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],22 ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],
23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],
24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],
25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]
26 ];26 ];
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158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>
159 <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt>159 <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt>
160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>
161 <dt>File·<a·class="el"·href="expandedensemble_8cpp.xhtml">expandedensemble.cpp</a>··</dt>161 <dt>File·<a·class="el"·href="expandedensemble_8cpp.xhtml">expandedensemble.cpp</a>··</dt>
162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>
163 <dt>Member·<a·class="el"·href="device__management_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt>163 <dt>Member·<a·class="el"·href="device__management_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt>
164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>
165 <dt>Member·<a·class="el"·href="expfit_8h.xhtml#a560ea7d97277b9e0576776ec695fb9b3">fit_acf</a>··(int·ncorr,·int·fitfn,·const·gmx_output_env_t·*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit)</dt>165 <dt>Member·<a·class="el"·href="expfit_8cpp.xhtml#a560ea7d97277b9e0576776ec695fb9b3">fit_acf</a>··(int·ncorr,·int·fitfn,·const·gmx_output_env_t·*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit)</dt>
166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>
167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>
168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>
170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
171 <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&amp;deviceInfo)</dt>171 <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&amp;deviceInfo)</dt>
172 <dd><a·class="anchor"·id="_todo000060"></a>:·Handled·AMD·RDNA?·</dd>172 <dd><a·class="anchor"·id="_todo000060"></a>:·Handled·AMD·RDNA?·</dd>
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477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>
478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>
479 </dd>479 </dd>
480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>
481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>
482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>
483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>
484 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>484 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>
485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>
486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>
487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>
488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>
489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>
490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>
491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>
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565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>
566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>
567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>
569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>
570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>
571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
572 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>572 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>
573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>
574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>
575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>
576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>
577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>
578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>
579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>
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596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],
598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
 602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'],
602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],603 ········['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()']
603 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'] 
604 ····]],604 ····]],
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605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],606 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']
606 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] 
607 ····]],607 ····]],
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609 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'] 
610 ····]],610 ····]],
611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
613 ····]],613 ····]],
614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],
615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],
616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],
Offset 618, 16 lines modifiedOffset 618, 16 lines modified
618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],
620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],
621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],
622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],
623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],
624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],
 625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'],
625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()'],626 ········['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()']
626 ········['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'] 
627 ····]],627 ····]],
628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],
629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']
630 ····]],630 ····]],
631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],
632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']
633 ····]],633 ····]],
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22 ····['uniquedeviceid_14',·['uniqueDeviceId',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'device_management_common.cpp']]],22 ····['uniquedeviceid_14',·['uniqueDeviceId',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'device_management_common.cpp']]],
23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],
24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
29 ····['unitvector_21',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'], 
30 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']29 ····['unitvector_21',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
 30 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']
31 ····]],31 ····]],
32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],
34 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'], 
35 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h']34 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
 35 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown']
36 ····]],36 ····]],
37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
42 ····['update_29',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],42 ····['update_29',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
 43 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'],
43 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],44 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()']
44 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'] 
45 ····]],45 ····]],
46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],
47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],
48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],
49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],
50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],
51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],
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65 ········['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups']65 ········['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups']
66 ····]],66 ····]],
67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],
68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],
69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']
70 ····]],70 ····]],
71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],
72 ····['updatehistory_51',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'], 
73 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()']72 ····['updatehistory_51',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],
 73 ········['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()']
74 ····]],74 ····]],
75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],
76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],
77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],
78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],
79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],
80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],
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231 ····]],231 ····]],
232 ····['optionsfinished_86',·['optionsfinished',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#ace80320e3379cc01c79e52c2a51e4e56',·1,·'gmx::ICommandLineOptionsModule::optionsFinished()'],232 ····['optionsfinished_86',·['optionsfinished',·['../classgmx_1_1ICommandLineOptionsModule.xhtml#ace80320e3379cc01c79e52c2a51e4e56',·1,·'gmx::ICommandLineOptionsModule::optionsFinished()'],
233 ········['../classgmx_1_1IOptionsBehavior.xhtml#a0e51c68861417e488fcb2a61b425887a',·1,·'gmx::IOptionsBehavior::optionsFinished()'],233 ········['../classgmx_1_1IOptionsBehavior.xhtml#a0e51c68861417e488fcb2a61b425887a',·1,·'gmx::IOptionsBehavior::optionsFinished()'],
234 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a39dbf3ae0c6cd27e41260525cdc81934',·1,·'gmx::TimeUnitBehavior::optionsFinished()'],234 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a39dbf3ae0c6cd27e41260525cdc81934',·1,·'gmx::TimeUnitBehavior::optionsFinished()'],
235 ········['../classgmx_1_1SelectionOptionBehavior.xhtml#ac18e2436bac7d70a0a973166150b3683',·1,·'gmx::SelectionOptionBehavior::optionsFinished()'],235 ········['../classgmx_1_1SelectionOptionBehavior.xhtml#ac18e2436bac7d70a0a973166150b3683',·1,·'gmx::SelectionOptionBehavior::optionsFinished()'],
236 ········['../classgmx_1_1TrajectoryAnalysisModule.xhtml#afa3457cc922f1d16c4c19cec740e0442',·1,·'gmx::TrajectoryAnalysisModule::optionsFinished()']236 ········['../classgmx_1_1TrajectoryAnalysisModule.xhtml#afa3457cc922f1d16c4c19cec740e0442',·1,·'gmx::TrajectoryAnalysisModule::optionsFinished()']
237 ····]],237 ····]],
238 ····['optionsfinishing_87',·['optionsfinishing',·['../classgmx_1_1IOptionsBehavior.xhtml#a2d687df65d56514816478fcda042c3b1',·1,·'gmx::IOptionsBehavior::optionsFinishing()'],238 ····['optionsfinishing_87',·['optionsfinishing',·['../classgmx_1_1SelectionOptionBehavior.xhtml#ab968390f8410e64d43021d5d7455154b',·1,·'gmx::SelectionOptionBehavior::optionsFinishing()'],
239 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a40693bc93fd435e9fb88c14f68dc709f',·1,·'gmx::TimeUnitBehavior::optionsFinishing()'],239 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a40693bc93fd435e9fb88c14f68dc709f',·1,·'gmx::TimeUnitBehavior::optionsFinishing()'],
240 ········['../classgmx_1_1SelectionOptionBehavior.xhtml#ab968390f8410e64d43021d5d7455154b',·1,·'gmx::SelectionOptionBehavior::optionsFinishing()']240 ········['../classgmx_1_1IOptionsBehavior.xhtml#a2d687df65d56514816478fcda042c3b1',·1,·'gmx::IOptionsBehavior::optionsFinishing()']
241 ····]],241 ····]],
242 ····['optiontemplate_88',·['OptionTemplate',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],242 ····['optiontemplate_88',·['OptionTemplate',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
243 ····['optiontemplate_3c_20bool_2c_20booleanoption_20_3e_89',·['OptionTemplate&lt;·bool,·BooleanOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],243 ····['optiontemplate_3c_20bool_2c_20booleanoption_20_3e_89',·['OptionTemplate&lt;·bool,·BooleanOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
244 ····['optiontemplate_3c_20double_2c_20doubleoption_20_3e_90',·['OptionTemplate&lt;·double,·DoubleOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],244 ····['optiontemplate_3c_20double_2c_20doubleoption_20_3e_90',·['OptionTemplate&lt;·double,·DoubleOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
245 ····['optiontemplate_3c_20enumtype_2c_20enumoption_3c_20enumtype_20_3e_20_3e_91',·['OptionTemplate&lt;·EnumType,·EnumOption&lt;·EnumType·&gt;·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],245 ····['optiontemplate_3c_20enumtype_2c_20enumoption_3c_20enumtype_20_3e_20_3e_91',·['OptionTemplate&lt;·EnumType,·EnumOption&lt;·EnumType·&gt;·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
246 ····['optiontemplate_3c_20enumtype_2c_20legacyenumoption_3c_20enumtype_20_3e_20_3e_92',·['OptionTemplate&lt;·EnumType,·LegacyEnumOption&lt;·EnumType·&gt;·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],246 ····['optiontemplate_3c_20enumtype_2c_20legacyenumoption_3c_20enumtype_20_3e_20_3e_92',·['OptionTemplate&lt;·EnumType,·LegacyEnumOption&lt;·EnumType·&gt;·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
247 ····['optiontemplate_3c_20float_2c_20floatoption_20_3e_93',·['OptionTemplate&lt;·float,·FloatOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],247 ····['optiontemplate_3c_20float_2c_20floatoption_20_3e_93',·['OptionTemplate&lt;·float,·FloatOption·&gt;',·['../classgmx_1_1OptionTemplate.xhtml',·1,·'gmx']]],
Offset 259, 31 lines modifiedOffset 259, 31 lines modified
259 ····['orientationstimeandensembleavbuffer_105',·['orientationsTimeAndEnsembleAvBuffer',·['../structt__oriresdata.xhtml#a9ca5caaf9f175ebf180358fffc6972db',·1,·'t_oriresdata']]],259 ····['orientationstimeandensembleavbuffer_105',·['orientationsTimeAndEnsembleAvBuffer',·['../structt__oriresdata.xhtml#a9ca5caaf9f175ebf180358fffc6972db',·1,·'t_oriresdata']]],
260 ····['other_106',·['Other',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a6311ae17c1ee52b36e68aaf4ad066387',·1,·'gmx']]],260 ····['other_106',·['Other',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a6311ae17c1ee52b36e68aaf4ad066387',·1,·'gmx']]],
261 ····['output_107',·['output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md26',·1,·'Coordinate·data·output'],261 ····['output_107',·['output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md26',·1,·'Coordinate·data·output'],
262 ········['../page_analysistemplate.xhtml#autotoc_md11',·1,·'Output']262 ········['../page_analysistemplate.xhtml#autotoc_md11',·1,·'Output']
263 ····]],263 ····]],
264 ····['output_20data_20analysisdata_108',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],264 ····['output_20data_20analysisdata_108',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],
265 ····['output_20data_20handling_109',·['output·data·handling',·['../page_analysisdata.xhtml',·1,·'Analysis·output·data·handling'],265 ····['output_20data_20handling_109',·['output·data·handling',·['../page_analysisdata.xhtml',·1,·'Analysis·output·data·handling'],
266 ········['../page_energyanalysisframework.xhtml#autotoc_md15',·1,·'Output·data·handling'], 
267 ········['../page_trajectoryanalysisframework.xhtml#autotoc_md25',·1,·'Output·data·handling']266 ········['../page_trajectoryanalysisframework.xhtml#autotoc_md25',·1,·'Output·data·handling'],
 267 ········['../page_energyanalysisframework.xhtml#autotoc_md15',·1,·'Output·data·handling']
268 ····]],268 ····]],
269 ····['outputadaptercontainer_2eh_110',·['outputadaptercontainer.h',·['../outputadaptercontainer_8h.xhtml',·1,·'']]],269 ····['outputadaptercontainer_2eh_110',·['outputadaptercontainer.h',·['../outputadaptercontainer_8h.xhtml',·1,·'']]],
270 ····['outputadapterpointer_111',·['OutputAdapterPointer',·['../namespacegmx.xhtml#a931d7c3f10f668b68f3307c9a23aac82',·1,·'gmx']]],270 ····['outputadapterpointer_111',·['OutputAdapterPointer',·['../namespacegmx.xhtml#a931d7c3f10f668b68f3307c9a23aac82',·1,·'gmx']]],
271 ····['outputadapters_2eh_112',·['outputadapters.h',·['../outputadapters_8h.xhtml',·1,·'(Global·Namespace)'],271 ····['outputadapters_2eh_112',·['outputadapters.h',·['../outputadapters_8h.xhtml',·1,·'(Global·Namespace)'],
272 ········['../tests_2outputadapters_8h.xhtml',·1,·'(Global·Namespace)']272 ········['../tests_2outputadapters_8h.xhtml',·1,·'(Global·Namespace)']
273 ····]],273 ····]],
274 ····['outputenv_5f_113',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]],274 ····['outputenv_5f_113',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]],
 275 ····['outputfile_114',·['outputfile',·['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()'],
275 ····['outputfile_114',·['outputfile',·['../classgmx_1_1TrajectoryFileOpener.xhtml#a95a59e0ec86cab7744c655097d17b211',·1,·'gmx::TrajectoryFileOpener::outputFile()'],276 ········['../classgmx_1_1TrajectoryFileOpener.xhtml#a95a59e0ec86cab7744c655097d17b211',·1,·'gmx::TrajectoryFileOpener::outputFile()']
276 ········['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()'] 
277 ····]],277 ····]],
278 ····['outputrequirementoptiondirector_115',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],278 ····['outputrequirementoptiondirector_115',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],
279 ····['outputrequirements_116',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],279 ····['outputrequirements_116',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],
280 ····['outputselector_117',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'],280 ····['outputselector_117',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector()'],
 281 ········['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'],
281 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&amp;sel)'],282 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector()']
282 ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&amp;&amp;old)·noexcept=default'] 
283 ····]],283 ····]],
284 ····['outputselector_2eh_118',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]],284 ····['outputselector_2eh_118',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]],
285 ····['outputselectorpointer_119',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]],285 ····['outputselectorpointer_119',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]],
286 ····['outputsforces_120',·['outputsforces',·['../classgmx_1_1TorchModel.xhtml#a4586a9e3c5c8b909d66de4fb6ec7a9cd',·1,·'gmx::TorchModel::outputsForces()'],286 ····['outputsforces_120',·['outputsforces',·['../classgmx_1_1TorchModel.xhtml#a4586a9e3c5c8b909d66de4fb6ec7a9cd',·1,·'gmx::TorchModel::outputsForces()'],
287 ········['../classgmx_1_1INNPotModel.xhtml#a3932241bd98dba18e262ac05c53d69ba',·1,·'gmx::INNPotModel::outputsForces()']287 ········['../classgmx_1_1INNPotModel.xhtml#a3932241bd98dba18e262ac05c53d69ba',·1,·'gmx::INNPotModel::outputsForces()']
288 ····]],288 ····]],
289 ····['over_20mpi_121',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],289 ····['over_20mpi_121',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
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83 ····['referencecoordinates_55',·['referenceCoordinates',·['../structt__oriresdata.xhtml#af77d3bc2cdec9b240c667f8075237a8a',·1,·'t_oriresdata']]],83 ····['referencecoordinates_55',·['referenceCoordinates',·['../structt__oriresdata.xhtml#af77d3bc2cdec9b240c667f8075237a8a',·1,·'t_oriresdata']]],
84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],
85 ····['refid_57',·['refid',·['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()'],85 ····['refid_57',·['refid',·['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()'],
86 ········['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid']86 ········['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid']
87 ····]],87 ····]],
88 ····['refids_58',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],88 ····['refids_58',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],
89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
90 ····['register_2ecpp_60',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],90 ····['register_2ecpp_60',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
91 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']91 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
92 ····]],92 ····]],
93 ····['register_2eh_61',·['register.h',·['../register_8h.xhtml',·1,·'']]],93 ····['register_2eh_61',·['register.h',·['../register_8h.xhtml',·1,·'']]],
94 ····['registeranalysisdataset_62',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],94 ····['registeranalysisdataset_62',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],
95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],
97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],
98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],
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2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],
3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],
4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],
5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],
6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']
7 ····]],7 ····]],
8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],
9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()'],
10 ········['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(const·param_type·&amp;param)'],10 ········['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],
11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(result_type·a=0.0,·result_type·b=1.0)']11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()']
12 ····]],12 ····]],
13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],
14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],
15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
22 ····['unitvector_14',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'], 
23 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']22 ····['unitvector_14',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
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24 ····]],24 ····]],
25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],
27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
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76305 ······<name>main</name>76305 ······<name>main</name>
76306 ····</member>76306 ····</member>
76307 ··</compound>76307 ··</compound>
76308 ··<compound·refid="abstractdata_8cpp"·kind="file">76308 ··<compound·refid="abstractdata_8cpp"·kind="file">
76309 ····<name>abstractdata.cpp</name>76309 ····<name>abstractdata.cpp</name>
76310 ··</compound>76310 ··</compound>
76311 ··<compound·refid="analysisdata_8cpp"·kind="file">76311 ··<compound·refid="arraydata_8cpp"·kind="file">
76312 ····<name>analysisdata.cpp</name>76312 ····<name>arraydata.cpp</name>
76313 ··</compound>76313 ··</compound>
76314 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">76314 ··<compound·refid="tests_2arraydata_8cpp"·kind="file">
76315 ····<name>analysisdata.cpp</name>76315 ····<name>arraydata.cpp</name>
76316 ··</compound>76316 ··</compound>
76317 ··<compound·refid="dataframe_8cpp"·kind="file">76317 ··<compound·refid="dataframe_8cpp"·kind="file">
76318 ····<name>dataframe.cpp</name>76318 ····<name>dataframe.cpp</name>
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76320 ··<compound·refid="datamodule_8cpp"·kind="file">76320 ··<compound·refid="datamodule_8cpp"·kind="file">
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76352 ··</compound>76352 ··</compound>
76353 ··<compound·refid="plot_8cpp"·kind="file">76353 ··<compound·refid="plot_8cpp"·kind="file">
76354 ····<name>plot.cpp</name>76354 ····<name>plot.cpp</name>
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76359 ··<compound·refid="arraydata_8cpp"·kind="file">76359 ··<compound·refid="analysisdata_8cpp"·kind="file">
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76570 ····<name>densityfittingforceprovider.cpp</name> 
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76572 ··<compound·refid="tests_2densityfittingforceprovider_8cpp"·kind="file"> 
76573 ····<name>densityfittingforceprovider.cpp</name> 
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76575 ··<compound·refid="densityfittingforceprovider_8h"·kind="file">76569 ··<compound·refid="densityfittingforceprovider_8h"·kind="file">
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 76602 ··<compound·refid="tests_2densityfittingforceprovider_8cpp"·kind="file">
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76608 ··<compound·refid="tests_2densityfittingoptions_8cpp"·kind="file">76608 ··<compound·refid="tests_2densityfittingoptions_8cpp"·kind="file">
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76611 ··<compound·refid="electricfield_8cpp"·kind="file"> 
76612 ····<name>electricfield.cpp</name> 
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76614 ··<compound·refid="tests_2electricfield_8cpp"·kind="file"> 
76615 ····<name>electricfield.cpp</name> 
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76617 ··<compound·refid="electricfield_8h"·kind="file">76611 ··<compound·refid="electricfield_8h"·kind="file">
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76621 ····<name>nnpot.cpp</name>76615 ····<name>nnpot.cpp</name>
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76623 ··<compound·refid="tests_2nnpot_8cpp"·kind="file">76617 ··<compound·refid="tests_2nnpot_8cpp"·kind="file">
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76626 ··<compound·refid="nnpot_8h"·kind="file">76620 ··<compound·refid="nnpot_8h"·kind="file">
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76629 ··<compound·refid="nnpotforceprovider_8cpp"·kind="file"> 
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76632 ··<compound·refid="tests_2nnpotforceprovider_8cpp"·kind="file"> 
76633 ····<name>nnpotforceprovider.cpp</name> 
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2663 ··············<anchor·id="todo_1_todo000152"/>2663 ··············<anchor·id="todo_1_todo000152"/>
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Offset 3202, 15 lines modifiedOffset 3202, 15 lines modified
3202 ··············<ndash/>3202 ··············<ndash/>
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3206 ··········<varlistentry>3206 ··········<varlistentry>
3207 ············<term>3207 ············<term>
3208 ··············Member3208 ··············Member
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3210 ··············(const·gmx_pme_t·*pme)3210 ··············(const·gmx_pme_t·*pme)
3211 ············</term>3211 ············</term>
3212 ··········</varlistentry>3212 ··········</varlistentry>
3213 ··········<listitem>3213 ··········<listitem>
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3215 ··············<anchor·id="todo_1_todo000025"/>3215 ··············<anchor·id="todo_1_todo000025"/>
3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.
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Offset 17662, 15 lines modifiedOffset 17662, 15 lines modified
17662 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David17662 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David
17663 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten17663 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten
17664 Wolf,·Artem·Zhmurov17664 Wolf,·Artem·Zhmurov
17665 Project·leaders:·Berk·Hess,·Erik·Lindahl17665 Project·leaders:·Berk·Hess,·Erik·Lindahl
17666 ©·1991·–·2000:17666 ©·1991·–·2000:
17667 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17667 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17668 The·Netherlands.17668 The·Netherlands.
17669 ©·2001·–·2025:17669 ©·2001·–·2026:
17670 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17670 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17671 Sweden.17671 Sweden.
17672 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first17672 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first
17673 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17673 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17674 is·not·entirely·correct.17674 is·not·entirely·correct.
17675 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17675 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17676 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue17676 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue
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00011760:·7279·2c20·556e·6976·6572·7369·7479·206f··ry,·University·o00011760:·7279·2c20·556e·6976·6572·7369·7479·206f··ry,·University·o
00011770:·6620·4772·6f6e·696e·6765·6e2e·0a4e·696a··f·Groningen..Nij00011770:·6620·4772·6f6e·696e·6765·6e2e·0a4e·696a··f·Groningen..Nij
00011780:·656e·626f·7267·6820·342c·2039·3734·3720··enborgh·4,·9747·00011780:·656e·626f·7267·6820·342c·2039·3734·3720··enborgh·4,·9747·
00011790:·4147·2047·726f·6e69·6e67·656e·2c20·5468··AG·Groningen,·Th00011790:·4147·2047·726f·6e69·6e67·656e·2c20·5468··AG·Groningen,·Th
000117a0:·6520·4e65·7468·6572·6c61·6e64·732e·3c2f··e·Netherlands.</000117a0:·6520·4e65·7468·6572·6c61·6e64·732e·3c2f··e·Netherlands.</
000117b0:·703e·0a3c·2f64·6976·3e3c·2f62·6c6f·636b··p>.</div></block000117b0:·703e·0a3c·2f64·6976·3e3c·2f62·6c6f·636b··p>.</div></block
000117c0:·7175·6f74·653e·0a3c·703e·c2a9·2032·3030··quote>.<p>..·200000117c0:·7175·6f74·653e·0a3c·703e·c2a9·2032·3030··quote>.<p>..·200
000117d0:·3120·e280·9320·3230·3235·3a3c·2f70·3e0a··1·...·2025:</p>.000117d0:·3120·e280·9320·3230·3236·3a3c·2f70·3e0a··1·...·2026:</p>.
000117e0:·3c62·6c6f·636b·7175·6f74·653e·0a3c·6469··<blockquote>.<di000117e0:·3c62·6c6f·636b·7175·6f74·653e·0a3c·6469··<blockquote>.<di
000117f0:·763e·3c70·3e54·6865·2047·524f·4d41·4353··v><p>The·GROMACS000117f0:·763e·3c70·3e54·6865·2047·524f·4d41·4353··v><p>The·GROMACS
00011800:·2064·6576·656c·6f70·6d65·6e74·2074·6561···development·tea00011800:·2064·6576·656c·6f70·6d65·6e74·2074·6561···development·tea
00011810:·6d73·2061·7420·7468·6520·526f·7961·6c20··ms·at·the·Royal·00011810:·6d73·2061·7420·7468·6520·526f·7961·6c20··ms·at·the·Royal·
00011820:·496e·7374·6974·7574·6520·6f66·2054·6563··Institute·of·Tec00011820:·496e·7374·6974·7574·6520·6f66·2054·6563··Institute·of·Tec
00011830:·686e·6f6c·6f67·7920·616e·640a·5570·7073··hnology·and.Upps00011830:·686e·6f6c·6f67·7920·616e·640a·5570·7073··hnology·and.Upps
00011840:·616c·6120·556e·6976·6572·7369·7479·2c20··ala·University,·00011840:·616c·6120·556e·6976·6572·7369·7479·2c20··ala·University,·
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Offset 458, 15 lines modifiedOffset 458, 15 lines modified
458 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons458 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons
459 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,459 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,
460 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov460 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
461 Project·leaders:·Berk·Hess,·Erik·Lindahl461 Project·leaders:·Berk·Hess,·Erik·Lindahl
462 ©·1991·–·2000:462 ©·1991·–·2000:
463 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.463 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
464 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.464 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
465 ©·2001·–·2025:465 ©·2001·–·2026:
466 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology466 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
467 ·····and·Uppsala·University,·Sweden.467 ·····and·Uppsala·University,·Sweden.
468 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time468 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time
469 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is469 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is
470 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not470 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
471 entirely·correct.471 entirely·correct.
472 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r472 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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./usr/share/doc/gromacs/html/searchindex.js
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Offset 11123, 15 lines modifiedOffset 11123, 15 lines modified
11123 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·372],11123 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·372],
11124 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·349,·372],11124 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·349,·372],
11125 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·372],11125 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·372],
11126 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·372],11126 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·372],
11127 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·372],11127 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·372],
11128 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·345,·346,·353,·354,·367],11128 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·345,·346,·353,·354,·367],
11129 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·347,·348,·350,·351,·352,·353,·354,·355,·356,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374,·375,·376],11129 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·347,·348,·350,·351,·352,·353,·354,·355,·356,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374,·375,·376],
11130 ········"2026":·[249,·357],11130 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66[·...·truncated·by·diffoscope;·len:·1517,·SHA:·09c8603a44542c22c70264356cca363de33355444e4d61d975a1611d4e1072b2·...·]],
11131 ········"2027":·249,11131 ········"2027":·249,
11132 ········"2028":·249,11132 ········"2028":·249,
11133 ········"2029":·223,11133 ········"2029":·223,
11134 ········"2031":·242,11134 ········"2031":·242,
11135 ········"2032":·[49,·193,·242],11135 ········"2032":·[49,·193,·242],
11136 ········"2033":·223,11136 ········"2033":·223,
11137 ········"2037":·[223,·239,·250],11137 ········"2037":·[223,·239,·250],
Generated by diffoscope 305