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1 -rw-r--r--···0········0········0········4·2025-02-15·18:22:37.000000·debian-binary1 -rw-r--r--···0········0········0········4·2025-02-15·18:22:37.000000·debian-binary
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2025.0-23 Version:·2025.0-2
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3290606 Installed-Size:·329058
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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74 </div><!--·top·-->74 </div><!--·top·-->
75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3552"·height="1964"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="4126"·height="1712"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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Offset 174, 67 lines modifiedOffset 174, 67 lines modified
174 ····['mapconstiterator_122',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],174 ····['mapconstiterator_122',·['MapConstIterator',·['../classgmx_1_1EnergyFrame.xhtml#a5b3ca67a8497cc2cf77f3c0da771fa95',·1,·'gmx::EnergyFrame']]],
175 ····['mapgridtodatagrid_123',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],175 ····['mapgridtodatagrid_123',·['mapGridToDataGrid',·['../namespacegmx.xhtml#ad49aba237e75034450c40885fccde22c',·1,·'gmx']]],
176 ····['mapid_124',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],176 ····['mapid_124',·['mapid',·['../structgmx__ana__indexmap__t.xhtml#a2675a18d204f864f94da0d616c115884',·1,·'gmx_ana_indexmap_t']]],
177 ····['mapnameformatterstoparameters_125',·['mapNameFormattersToParameters',·['../naming_8h.xhtml#a8152d9167617d92ebbc1c23f7af65108',·1,·'gmx::test::detail']]],177 ····['mapnameformatterstoparameters_125',·['mapNameFormattersToParameters',·['../naming_8h.xhtml#a8152d9167617d92ebbc1c23f7af65108',·1,·'gmx::test::detail']]],
178 ····['mappedid_126',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],178 ····['mappedid_126',·['mappedId',·['../classgmx_1_1SelectionPosition.xhtml#a9b2a183cd94c03a9aabe10c89e73648b',·1,·'gmx::SelectionPosition']]],
179 ····['mappedids_127',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],179 ····['mappedids_127',·['mappedIds',·['../classgmx_1_1Selection.xhtml#a44d2c2cd4db4eade34cac95f5916a2a0',·1,·'gmx::Selection']]],
180 ····['mappedunionfinder_128',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],180 ····['mappedunionfinder_128',·['MappedUnionFinder',·['../classgmx_1_1MappedUnionFinder.xhtml',·1,·'gmx']]],
181 ····['mapping_129',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()'], 
182 ········['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'],181 ····['mapping_129',·['mapping',·['../classgmx_1_1layout__right_1_1mapping.xhtml',·1,·'gmx::layout_right::mapping&lt;·Extents·&gt;'],
183 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping()'], 
184 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()'],182 ········['../classgmx_1_1basic__mdspan.xhtml#a02c710cacde0166f1c5f4c67b9971cee',·1,·'gmx::basic_mdspan::mapping()'],
 183 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a7aa3312a770a6a3946d60a7e23cb2002',·1,·'gmx::layout_right::mapping::mapping(const·Extents·&amp;ext)·noexcept'],
185 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping(const·mapping·&amp;)·noexcept=default'],184 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#ad632683c77288c28df614ea7915917ce',·1,·'gmx::layout_right::mapping::mapping(const·mapping·&amp;)·noexcept=default'],
186 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default']185 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#afc7b2299be673f6d37d0a570e061da72',·1,·'gmx::layout_right::mapping::mapping(mapping·&amp;&amp;)·noexcept=default'],
 186 ········['../classgmx_1_1layout__right_1_1mapping.xhtml#a80905ecdaf35273d7f7c303e7d2ff909',·1,·'gmx::layout_right::mapping::mapping()·noexcept=default']
187 ····]],187 ····]],
188 ····['mapping_5ftype_130',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],188 ····['mapping_5ftype_130',·['mapping_type',·['../classgmx_1_1basic__mdspan.xhtml#a41c0126e07c9b922b4b838b578af7888',·1,·'gmx::basic_mdspan']]],
189 ····['maptoframeatoms_5f_131',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],189 ····['maptoframeatoms_5f_131',·['mapToFrameAtoms_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a028b638ac6bf4c5c76f4c78819d94cff',·1,·'gmx::PositionCalculationCollection::Impl']]],
190 ····['maptype_132',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],190 ····['maptype_132',·['MapType',·['../classgmx_1_1EnergyFrame.xhtml#ae7cbc6aabfeacd2447563d8f137045f4',·1,·'gmx::EnergyFrame']]],
191 ····['mark_5fsubexpr_5fdynamic_133',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],191 ····['mark_5fsubexpr_5fdynamic_133',·['mark_subexpr_dynamic',·['../compiler_8cpp.xhtml#a2ce676e6caff3877910cd9cfc27cb955',·1,·'compiler.cpp']]],
192 ····['mark_5fsurface_5fcovered_134',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],192 ····['mark_5fsurface_5fcovered_134',·['mark_surface_covered',·['../sm__insolidangle_8cpp.xhtml#ad016ba6ae3e4a77948222f08f4004e4f',·1,·'sm_insolidangle.cpp']]],
193 ····['markasreadytoreduce_135',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],193 ····['markasreadytoreduce_135',·['markAsReadyToReduce',·['../classgmx_1_1ObservablesReducer.xhtml#aa76fb912aca1c30275e567685626f515',·1,·'gmx::ObservablesReducer']]],
194 ····['markasset_136',·['markAsSet',·['../classgmx_1_1AbstractOptionStorage.xhtml#af02f972186bba8ff52f0e789e7d6fedc',·1,·'gmx::AbstractOptionStorage']]],194 ····['markasset_136',·['markAsSet',·['../classgmx_1_1AbstractOptionStorage.xhtml#af02f972186bba8ff52f0e789e7d6fedc',·1,·'gmx::AbstractOptionStorage']]],
195 ····['marknotified_137',·['markNotified',·['../classgmx_1_1internal_1_1AnalysisDataStorageFrameData.xhtml#a2e4ff0da40c2d126b1dd4539cc1d8d99',·1,·'gmx::internal::AnalysisDataStorageFrameData']]],195 ····['marknotified_137',·['markNotified',·['../classgmx_1_1internal_1_1AnalysisDataStorageFrameData.xhtml#a2e4ff0da40c2d126b1dd4539cc1d8d99',·1,·'gmx::internal::AnalysisDataStorageFrameData']]],
196 ····['markup_138',·['markup',·['../page_onlinehelp.xhtml#autotoc_md91',·1,·'Formatting·markup'],196 ····['markup_138',·['markup',·['../page_onlinehelp.xhtml#autotoc_md91',·1,·'Formatting·markup'],
197 ········['../page_onlinehelp.xhtml#autotoc_md93',·1,·'GROMACS-specific·markup']197 ········['../page_onlinehelp.xhtml#autotoc_md93',·1,·'GROMACS-specific·markup']
198 ····]],198 ····]],
199 ····['mask_139',·['mask',·['../classgmx_1_1test_1_1AllocatorTest.xhtml#a3b860b1af26fe4dce4d932a100a1d1ab',·1,·'gmx::test::AllocatorTest']]],199 ····['mask_139',·['mask',·['../classgmx_1_1test_1_1AllocatorTest.xhtml#a3b860b1af26fe4dce4d932a100a1d1ab',·1,·'gmx::test::AllocatorTest']]],
 200 ····['maskadd_140',·['maskadd',·['../namespacegmx.xhtml#a0178a127dde331652ab015323ae622f2',·1,·'gmx::maskAdd(float·a,·float·b,·float·m)'],
 201 ········['../namespacegmx.xhtml#a68b090d0e3ab5695c508453406ee43c8',·1,·'gmx::maskAdd(double·a,·double·b,·double·m)'],
200 ····['maskadd_140',·['maskadd',·['../group__module__simd.xhtml#ga766a313a4a158cfcb0eed0373dd82dfc',·1,·'gmx::maskAdd(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],202 ········['../group__module__simd.xhtml#ga766a313a4a158cfcb0eed0373dd82dfc',·1,·'gmx::maskAdd(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],
201 ········['../namespacegmx.xhtml#a0178a127dde331652ab015323ae622f2',·1,·'gmx::maskAdd(float·a,·float·b,·float·m)'], 
202 ········['../group__module__simd.xhtml#gadab86e04bd62248ab68039d8983a9206',·1,·'gmx::maskAdd(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)'],203 ········['../group__module__simd.xhtml#gadab86e04bd62248ab68039d8983a9206',·1,·'gmx::maskAdd(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']
203 ········['../namespacegmx.xhtml#a68b090d0e3ab5695c508453406ee43c8',·1,·'gmx::maskAdd(double·a,·double·b,·double·m)'] 
204 ····]],204 ····]],
205 ····['maskarray_141',·['maskarray',·['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsHalfISize_01_4.xhtml#aa09948a382ac9009e878a3bf5081abd5',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsHalfISize·&gt;::maskArray()'],205 ····['maskarray_141',·['maskarray',·['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsHalfISize_01_4.xhtml#aa09948a382ac9009e878a3bf5081abd5',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsHalfISize·&gt;::maskArray()'],
206 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeEqualsISize_01_4.xhtml#a42fcf1ef011c98c6dca2d5fb14a4ff53',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeEqualsISize·&gt;::maskArray()'], 
207 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsDoubleISize_01_4.xhtml#a45e2188c94bad5c65ddfbf1802dd7a81',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsDoubleISize·&gt;::maskArray()']206 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeIsDoubleISize_01_4.xhtml#a45e2188c94bad5c65ddfbf1802dd7a81',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeIsDoubleISize·&gt;::maskArray()'],
 207 ········['../classgmx_1_1DiagonalMasker_3_01nR_00_01kernelLayout_00_01KernelLayoutClusterRatio_1_1JSizeEqualsISize_01_4.xhtml#a42fcf1ef011c98c6dca2d5fb14a4ff53',·1,·'gmx::DiagonalMasker&lt;·nR,·kernelLayout,·KernelLayoutClusterRatio::JSizeEqualsISize·&gt;::maskArray()']
208 ····]],208 ····]],
209 ····['maskzfma_142',·['maskzfma',·['../group__module__simd.xhtml#gac21c886b9883657fd67d8b48e784af2d',·1,·'gmx::maskzFma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c,·SimdFBool·m)'], 
210 ········['../group__module__simd.xhtml#gaaa689a6c17b1d60d62b6fcd51daa7639',·1,·'gmx::maskzFma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c,·SimdDBool·m)'],209 ····['maskzfma_142',·['maskzfma',·['../group__module__simd.xhtml#gaaa689a6c17b1d60d62b6fcd51daa7639',·1,·'gmx::maskzFma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c,·SimdDBool·m)'],
 210 ········['../group__module__simd.xhtml#gac21c886b9883657fd67d8b48e784af2d',·1,·'gmx::maskzFma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c,·SimdFBool·m)'],
 211 ········['../namespacegmx.xhtml#a8151e61ef06e30e360c03bba6fb5e2ab',·1,·'gmx::maskzFma(float·a,·float·b,·float·c,·float·m)'],
211 ········['../namespacegmx.xhtml#aa3cf4eaad108887d2462f5beecd4db62',·1,·'gmx::maskzFma(double·a,·double·b,·double·c,·double·m)'],212 ········['../namespacegmx.xhtml#aa3cf4eaad108887d2462f5beecd4db62',·1,·'gmx::maskzFma(double·a,·double·b,·double·c,·double·m)']
212 ········['../namespacegmx.xhtml#a8151e61ef06e30e360c03bba6fb5e2ab',·1,·'gmx::maskzFma(float·a,·float·b,·float·c,·float·m)'] 
213 ····]],213 ····]],
214 ····['maskzinv_143',·['maskzinv',·['../namespacegmx.xhtml#a582d71ff8e7d51cbd2386e29935e89ef',·1,·'gmx::maskzInv(float·x,·bool·m)'],214 ····['maskzinv_143',·['maskzinv',·['../namespacegmx.xhtml#a582d71ff8e7d51cbd2386e29935e89ef',·1,·'gmx::maskzInv(float·x,·bool·m)'],
215 ········['../namespacegmx.xhtml#af5cc89f64ab845f88816a9cbb16d467c',·1,·'gmx::maskzInv(double·x,·bool·m)']215 ········['../namespacegmx.xhtml#af5cc89f64ab845f88816a9cbb16d467c',·1,·'gmx::maskzInv(double·x,·bool·m)']
216 ····]],216 ····]],
217 ····['maskzinvsingleaccuracy_144',·['maskzInvSingleAccuracy',·['../namespacegmx.xhtml#a2433c82892495a73bf41de15f5e8908f',·1,·'gmx']]],217 ····['maskzinvsingleaccuracy_144',·['maskzInvSingleAccuracy',·['../namespacegmx.xhtml#a2433c82892495a73bf41de15f5e8908f',·1,·'gmx']]],
218 ····['maskzinvsqrt_145',·['maskzinvsqrt',·['../namespacegmx.xhtml#aa182f9ceead92b3055e6ae5903994651',·1,·'gmx::maskzInvsqrt(float·x,·bool·m)'],218 ····['maskzinvsqrt_145',·['maskzinvsqrt',·['../namespacegmx.xhtml#aa182f9ceead92b3055e6ae5903994651',·1,·'gmx::maskzInvsqrt(float·x,·bool·m)'],
219 ········['../namespacegmx.xhtml#aa5b5a9766964a2b854f493fd783bb63d',·1,·'gmx::maskzInvsqrt(double·x,·bool·m)']219 ········['../namespacegmx.xhtml#aa5b5a9766964a2b854f493fd783bb63d',·1,·'gmx::maskzInvsqrt(double·x,·bool·m)']
220 ····]],220 ····]],
221 ····['maskzinvsqrtsingleaccuracy_146',·['maskzInvsqrtSingleAccuracy',·['../namespacegmx.xhtml#a1fdaf91102db0bfbc6fd440524b15199',·1,·'gmx']]],221 ····['maskzinvsqrtsingleaccuracy_146',·['maskzInvsqrtSingleAccuracy',·['../namespacegmx.xhtml#a1fdaf91102db0bfbc6fd440524b15199',·1,·'gmx']]],
222 ····['maskzmul_147',·['maskzmul',·['../group__module__simd.xhtml#gafb416d879be4463f38af9b670583fd65',·1,·'gmx::maskzMul(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)'], 
223 ········['../namespacegmx.xhtml#a7e4ab8b1ab046ff242d32ab93366bfde',·1,·'gmx::maskzMul(double·a,·double·b,·double·m)'],222 ····['maskzmul_147',·['maskzmul',·['../namespacegmx.xhtml#a7e4ab8b1ab046ff242d32ab93366bfde',·1,·'gmx::maskzMul(double·a,·double·b,·double·m)'],
224 ········['../namespacegmx.xhtml#a1e3c4084e25d298f95003df8e9aeffa1',·1,·'gmx::maskzMul(float·a,·float·b,·float·m)'],223 ········['../namespacegmx.xhtml#a1e3c4084e25d298f95003df8e9aeffa1',·1,·'gmx::maskzMul(float·a,·float·b,·float·m)'],
225 ········['../group__module__simd.xhtml#gaa732ce9ab59cca63f834923a8cb4c775',·1,·'gmx::maskzMul(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)']224 ········['../group__module__simd.xhtml#gaa732ce9ab59cca63f834923a8cb4c775',·1,·'gmx::maskzMul(SimdFloat·a,·SimdFloat·b,·SimdFBool·m)'],
 225 ········['../group__module__simd.xhtml#gafb416d879be4463f38af9b670583fd65',·1,·'gmx::maskzMul(SimdDouble·a,·SimdDouble·b,·SimdDBool·m)']
226 ····]],226 ····]],
227 ····['maskzrcp_148',·['maskzrcp',·['../namespacegmx.xhtml#a46aa2887b65705f41a4f99028391e06d',·1,·'gmx::maskzRcp(double·x,·double·m)'],227 ····['maskzrcp_148',·['maskzrcp',·['../namespacegmx.xhtml#a46aa2887b65705f41a4f99028391e06d',·1,·'gmx::maskzRcp(double·x,·double·m)'],
228 ········['../namespacegmx.xhtml#a5e2078ca9735b86c8414dc80273c330f',·1,·'gmx::maskzRcp(float·x,·float·m)'],228 ········['../namespacegmx.xhtml#a5e2078ca9735b86c8414dc80273c330f',·1,·'gmx::maskzRcp(float·x,·float·m)'],
229 ········['../group__module__simd.xhtml#gabda785f716b1445f709fc7aa028c0589',·1,·'gmx::maskzRcp(SimdFloat·x,·SimdFBool·m)'],229 ········['../group__module__simd.xhtml#gabda785f716b1445f709fc7aa028c0589',·1,·'gmx::maskzRcp(SimdFloat·x,·SimdFBool·m)'],
230 ········['../group__module__simd.xhtml#ga0f425368efd0895189b0e11d4b5d4ccc',·1,·'gmx::maskzRcp(SimdDouble·x,·SimdDBool·m)']230 ········['../group__module__simd.xhtml#ga0f425368efd0895189b0e11d4b5d4ccc',·1,·'gmx::maskzRcp(SimdDouble·x,·SimdDBool·m)']
231 ····]],231 ····]],
232 ····['maskzrsqrt_149',·['maskzrsqrt',·['../group__module__simd.xhtml#ga6eb1ba8851b08ceea1c160b6b255ee9b',·1,·'gmx::maskzRsqrt(SimdFloat·x,·SimdFBool·m)'], 
233 ········['../group__module__simd.xhtml#ga3bbc24d75706e7515afc2f2071f1a469',·1,·'gmx::maskzRsqrt(SimdDouble·x,·SimdDBool·m)']232 ····['maskzrsqrt_149',·['maskzrsqrt',·['../group__module__simd.xhtml#ga3bbc24d75706e7515afc2f2071f1a469',·1,·'gmx::maskzRsqrt(SimdDouble·x,·SimdDBool·m)'],
 233 ········['../group__module__simd.xhtml#ga6eb1ba8851b08ceea1c160b6b255ee9b',·1,·'gmx::maskzRsqrt(SimdFloat·x,·SimdFBool·m)']
234 ····]],234 ····]],
235 ····['mass_150',·['mass',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099faff2864d6f652ee0ac254814f1ae4f4a8',·1,·'gmx::Mass'],235 ····['mass_150',·['mass',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099faff2864d6f652ee0ac254814f1ae4f4a8',·1,·'gmx::Mass'],
236 ········['../structSystemMomentum.xhtml#a28f63449530903c6d45c9bb6051e545a',·1,·'SystemMomentum::mass'],236 ········['../structSystemMomentum.xhtml#a28f63449530903c6d45c9bb6051e545a',·1,·'SystemMomentum::mass'],
237 ········['../structgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MoleculeData.xhtml#a905e6d6ed76e407661419ade98690710',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData::mass'],237 ········['../structgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MoleculeData.xhtml#a905e6d6ed76e407661419ade98690710',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MoleculeData::mass'],
238 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()']238 ········['../classgmx_1_1SelectionPosition.xhtml#ad0d89cf9872c5209484b47af5a829169',·1,·'gmx::SelectionPosition::mass()']
239 ····]],239 ····]],
240 ····['masses_151',·['masses',·['../classgmx_1_1Selection.xhtml#aca468745670b88b10b2adcce026ae259',·1,·'gmx::Selection::masses()'],240 ····['masses_151',·['masses',·['../classgmx_1_1Selection.xhtml#aca468745670b88b10b2adcce026ae259',·1,·'gmx::Selection::masses()'],
Offset 274, 18 lines modifiedOffset 274, 18 lines modified
274 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],274 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],
275 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],275 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],
276 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],276 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],
277 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'],277 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'],
278 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],278 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],
279 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'],279 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'],
280 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],280 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],
281 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'], 
282 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'],281 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'],
283 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],282 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],
284 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)']283 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'],
 284 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)']
285 ····]],285 ····]],
286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],
287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],
288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],
289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2'],289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2'],
290 ········['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp']290 ········['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp']
291 ····]],291 ····]],
Offset 542, 118 lines modifiedOffset 542, 118 lines modified
542 ····['mh_345',·['mH',·['../structSettleWaterTopology.xhtml#ae5c2bb98e8301302136172d7327aabe6',·1,·'SettleWaterTopology']]],542 ····['mh_345',·['mH',·['../structSettleWaterTopology.xhtml#ae5c2bb98e8301302136172d7327aabe6',·1,·'SettleWaterTopology']]],
543 ····['mhbox_5fdiag_346',·['mhbox_diag',·['../structt__pbc.xhtml#a99115cf054cd015a6320f2c7a3decb95',·1,·'t_pbc']]],543 ····['mhbox_5fdiag_346',·['mhbox_diag',·['../structt__pbc.xhtml#a99115cf054cd015a6320f2c7a3decb95',·1,·'t_pbc']]],
544 ····['mimic_2ecpp_347',·['mimic.cpp',·['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],544 ····['mimic_2ecpp_347',·['mimic.cpp',·['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],
545 ········['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']545 ········['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']
546 ····]],546 ····]],
547 ····['mimiccommunicator_348',·['MimicCommunicator',·['../classgmx_1_1MimicCommunicator.xhtml',·1,·'gmx']]],547 ····['mimiccommunicator_348',·['MimicCommunicator',·['../classgmx_1_1MimicCommunicator.xhtml',·1,·'gmx']]],
548 ····['mimictest_349',·['MimicTest',·['../classgmx_1_1test_1_1MimicTest.xhtml',·1,·'gmx::test']]],548 ····['mimictest_349',·['MimicTest',·['../classgmx_1_1test_1_1MimicTest.xhtml',·1,·'gmx::test']]],
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549 ····['min_350',·['min',·['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a8d1d5c9d6d6befc8db69b80a1f32d011',·1,·'gmx::BoundingBox::Corner::min()'], 
550 ········['../classgmx_1_1ExponentialDistribution.xhtml#a01eeced5dfdf0a9ac49fd8cde86ca86c',·1,·'gmx::ExponentialDistribution::min()'], 
551 ········['../classgmx_1_1GammaDistribution.xhtml#a508ed49231881353e4994ac6805dbd96',·1,·'gmx::GammaDistribution::min()'],550 ········['../classgmx_1_1GammaDistribution.xhtml#a508ed49231881353e4994ac6805dbd96',·1,·'gmx::GammaDistribution::min()'],
552 ········['../classgmx_1_1NormalDistribution.xhtml#a0d071daf59c7d5fd6cc2e03e986eb573',·1,·'gmx::NormalDistribution::min()'], 
553 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a7f7e85f465de2b7114ac1716aace7920',·1,·'gmx::TabulatedNormalDistribution::min()'], 
554 ········['../classgmx_1_1UniformRealDistribution.xhtml#a6a8182b711f1f09839fd540cd7380aa2',·1,·'gmx::UniformRealDistribution::min()'], 
555 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a894276bb060524bbd3c43d2d86a96fa8',·1,·'gmx::ThreeFry2x64General::min()'], 
556 ········['../classgmx_1_1UniformIntDistribution.xhtml#a2ba096f455f54b3312098b670c517095',·1,·'gmx::UniformIntDistribution::min()'],551 ········['../classgmx_1_1UniformIntDistribution.xhtml#a2ba096f455f54b3312098b670c517095',·1,·'gmx::UniformIntDistribution::min()'],
 552 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a7f7e85f465de2b7114ac1716aace7920',·1,·'gmx::TabulatedNormalDistribution::min()'],
557 ········['../namespacegmx.xhtml#a65fb0c7aa84962905d3d78a913c787c3',·1,·'gmx::min(double·a,·double·b)'],553 ········['../namespacegmx.xhtml#a65fb0c7aa84962905d3d78a913c787c3',·1,·'gmx::min(double·a,·double·b)'],
558 ········['../namespacegmx.xhtml#aa6d21dccd9a94698363bdb1943f139bb',·1,·'gmx::min(float·a,·float·b)'],554 ········['../namespacegmx.xhtml#aa6d21dccd9a94698363bdb1943f139bb',·1,·'gmx::min(float·a,·float·b)'],
559 ········['../group__module__simd.xhtml#ga66c497c1f66c2aaccafefdfdeaf6ce2f',·1,·'gmx::min(SimdFloat·a,·SimdFloat·b)'],555 ········['../group__module__simd.xhtml#ga66c497c1f66c2aaccafefdfdeaf6ce2f',·1,·'gmx::min(SimdFloat·a,·SimdFloat·b)'],
560 ········['../group__module__simd.xhtml#gacf515651ecc6efcf3ec65a8ff488ea02',·1,·'gmx::min(Simd4Double·a,·Simd4Double·b)'],556 ········['../group__module__simd.xhtml#ga48c0e6ede1542c0a5eee7094c56d51b2',·1,·'gmx::min(SimdDouble·a,·SimdDouble·b)'],
561 ········['../group__module__simd.xhtml#ga2da2e85aea6a6eef4add06627566b8ab',·1,·'gmx::min(Simd4Float·a,·Simd4Float·b)'],557 ········['../group__module__simd.xhtml#ga2da2e85aea6a6eef4add06627566b8ab',·1,·'gmx::min(Simd4Float·a,·Simd4Float·b)'],
562 ········['../group__module__simd.xhtml#ga48c0e6ede1542c0a5eee7094c56d51b2',·1,·'gmx::min(SimdDouble·a,·SimdDouble·b)']558 ········['../group__module__simd.xhtml#gacf515651ecc6efcf3ec65a8ff488ea02',·1,·'gmx::min(Simd4Double·a,·Simd4Double·b)'],
 559 ········['../classgmx_1_1ExponentialDistribution.xhtml#a01eeced5dfdf0a9ac49fd8cde86ca86c',·1,·'gmx::ExponentialDistribution::min()'],
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 561 ········['../classgmx_1_1UniformRealDistribution.xhtml#a6a8182b711f1f09839fd540cd7380aa2',·1,·'gmx::UniformRealDistribution::min()'],
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563 ····]],563 ····]],
564 ····['min_5f_351',·['min_',·['../structgmx_1_1MrcDataStatistics.xhtml#a44fd54ddb96bae54c1106fdd50bf35b4',·1,·'gmx::MrcDataStatistics']]],564 ····['min_5f_351',·['min_',·['../structgmx_1_1MrcDataStatistics.xhtml#a44fd54ddb96bae54c1106fdd50bf35b4',·1,·'gmx::MrcDataStatistics']]],
565 ····['min_5fatoms_5fper_5fgpu_352',·['min_atoms_per_gpu',·['../resourcedivision_8cpp.xhtml#af7c741d3817214b7d0507bf8b4d63ec9',·1,·'resourcedivision.cpp']]],565 ····['min_5fatoms_5fper_5fgpu_352',·['min_atoms_per_gpu',·['../resourcedivision_8cpp.xhtml#af7c741d3817214b7d0507bf8b4d63ec9',·1,·'resourcedivision.cpp']]],
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336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],
337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],
338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],
339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],
340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],
341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],
 342 ····['next_229',·['next',·['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'],
342 ····['next_229',·['next',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],
343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],344 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],
344 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],345 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],
345 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],346 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],
346 ········['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'], 
347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']
348 ····]],348 ····]],
349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],
350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']
351 ····]],351 ····]],
352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],
353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],
Offset 365, 62 lines modifiedOffset 365, 62 lines modified
365 ····['nfile_244',·['NFILE',·['../gmx__wham_8cpp.xhtml#a8485f4e81de2537e6a0935626167a775',·1,·'gmx_wham.cpp']]],365 ····['nfile_244',·['NFILE',·['../gmx__wham_8cpp.xhtml#a8485f4e81de2537e6a0935626167a775',·1,·'gmx_wham.cpp']]],
366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],
367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],
368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],
369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],
370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],
371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],
372 ····['ngtc_251',·['ngtc',·['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc'],372 ····['ngtc_251',·['ngtc',·['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc'],
373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],
374 ········['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc']374 ········['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc']
375 ····]],375 ····]],
376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],
377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],
378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']
379 ····]],379 ····]],
380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],
 381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi'],
381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi'],382 ········['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi']
382 ········['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi'] 
383 ····]],383 ····]],
384 ····['nhpres_5fxi_256',·['nhpres_xi',·['../classt__state.xhtml#aad70ff9fb16e28b424c2b817618409d0',·1,·'t_state::nhpres_xi'], 
385 ········['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi']384 ····['nhpres_5fxi_256',·['nhpres_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi'],
 385 ········['../classt__state.xhtml#aad70ff9fb16e28b424c2b817618409d0',·1,·'t_state::nhpres_xi']
386 ····]],386 ····]],
387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],
388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],
389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],
390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],
393 ····['niter_263',·['nIter',·['../classgmx_1_1Lincs.xhtml#a824b37b2ef7e60c47c602b99401253cb',·1,·'gmx::Lincs']]],393 ····['niter_263',·['nIter',·['../classgmx_1_1Lincs.xhtml#a824b37b2ef7e60c47c602b99401253cb',·1,·'gmx::Lincs']]],
394 ····['nk_264',·['nk',·['../structPmeShared.xhtml#ad46bca92a6c9fcfab1703a4a543c08ad',·1,·'PmeShared']]],394 ····['nk_264',·['nk',·['../structPmeShared.xhtml#ad46bca92a6c9fcfab1703a4a543c08ad',·1,·'PmeShared']]],
395 ····['nlambda_265',·['nlambda',·['../structCheckpointHeaderContents.xhtml#ab66bef502f8f4264009a232ccb2784f2',·1,·'CheckpointHeaderContents::nlambda'],395 ····['nlambda_265',·['nlambda',·['../structgmx_1_1test_1_1anonymous__namespace_02freeenergyparameters_8cpp_03_1_1FreeEnergyParameterTestParameters.xhtml#aa38e81dff96e60ddd2840caf586a25f8',·1,·'gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters::nLambda'],
396 ········['../structdf__history__t.xhtml#a4eb78866873d889cb92ac4c8ae4a9fc5',·1,·'df_history_t::nlambda'],396 ········['../structdf__history__t.xhtml#a4eb78866873d889cb92ac4c8ae4a9fc5',·1,·'df_history_t::nlambda'],
397 ········['../structgmx_1_1test_1_1anonymous__namespace_02freeenergyparameters_8cpp_03_1_1FreeEnergyParameterTestParameters.xhtml#aa38e81dff96e60ddd2840caf586a25f8',·1,·'gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters::nLambda']397 ········['../structCheckpointHeaderContents.xhtml#ab66bef502f8f4264009a232ccb2784f2',·1,·'CheckpointHeaderContents::nlambda']
398 ····]],398 ····]],
399 ····['nlhelp_266',·['nlhelp',·['../structgmx__ana__selmethod__help__t.xhtml#a6c9953d18124d498c25625b5bbe93ca2',·1,·'gmx_ana_selmethod_help_t']]],399 ····['nlhelp_266',·['nlhelp',·['../structgmx__ana__selmethod__help__t.xhtml#a6c9953d18124d498c25625b5bbe93ca2',·1,·'gmx_ana_selmethod_help_t']]],
400 ····['nlocat_267',·['nlocat',·['../classgmx_1_1Lincs.xhtml#a680bd23340caa32d1487edebe29d9d73',·1,·'gmx::Lincs']]],400 ····['nlocat_267',·['nlocat',·['../classgmx_1_1Lincs.xhtml#a680bd23340caa32d1487edebe29d9d73',·1,·'gmx::Lincs']]],
401 ····['nmax_268',·['nmax',·['../classgmx_1_1AnalysisDataDisplacementModule_1_1Impl.xhtml#a8e5b2f9059d6f17693094a6a4b5128d2',·1,·'gmx::AnalysisDataDisplacementModule::Impl']]],401 ····['nmax_268',·['nmax',·['../classgmx_1_1AnalysisDataDisplacementModule_1_1Impl.xhtml#a8e5b2f9059d6f17693094a6a4b5128d2',·1,·'gmx::AnalysisDataDisplacementModule::Impl']]],
402 ····['nmol_269',·['nmol',·['../structswap__compartment.xhtml#a2e94233e596a0f850f243f40ed3065ad',·1,·'swap_compartment::nMol'], 
403 ········['../classIListProxy.xhtml#af03684eb1f6214d450b0eafe27f6656e',·1,·'IListProxy::nmol()'],402 ····['nmol_269',·['nmol',·['../classIListProxy.xhtml#af03684eb1f6214d450b0eafe27f6656e',·1,·'IListProxy::nmol()'],
404 ········['../structgmx__molblock__t.xhtml#ad66167c805c7e81d2b03230107f6988e',·1,·'gmx_molblock_t::nmol']403 ········['../structgmx__molblock__t.xhtml#ad66167c805c7e81d2b03230107f6988e',·1,·'gmx_molblock_t::nmol'],
 404 ········['../structswap__compartment.xhtml#a2e94233e596a0f850f243f40ed3065ad',·1,·'swap_compartment::nMol']
405 ····]],405 ····]],
406 ····['nmolav_270',·['nMolAv',·['../structswap__compartment.xhtml#a1c5cf1b43aad0e72e026192e463ef86d',·1,·'swap_compartment']]],406 ····['nmolav_270',·['nMolAv',·['../structswap__compartment.xhtml#a1c5cf1b43aad0e72e026192e463ef86d',·1,·'swap_compartment']]],
407 ····['nmolbefore_271',·['nMolBefore',·['../structswap__compartment.xhtml#a292f4fa2500a441010023c9153bbddbd',·1,·'swap_compartment']]],407 ····['nmolbefore_271',·['nMolBefore',·['../structswap__compartment.xhtml#a292f4fa2500a441010023c9153bbddbd',·1,·'swap_compartment']]],
408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],
409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],
410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],
411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],
413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],
414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],
415 ····['nnhpres_279',·['nnhpres',·['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres'],415 ····['nnhpres_279',·['nnhpres',·['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres'],
416 ········['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres']416 ········['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres']
417 ····]],417 ····]],
418 ····['nnodes_280',·['nnodes',·['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes'], 
419 ········['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes']418 ····['nnodes_280',·['nnodes',·['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes'],
 419 ········['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes']
420 ····]],420 ····]],
421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],
422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],
423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
424 ········['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']424 ········['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
425 ····]],425 ····]],
426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
Offset 438, 34 lines modifiedOffset 438, 34 lines modified
438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
439 ····]],439 ····]],
440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],
442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],
443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']
444 ····]],444 ····]],
445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
446 ········['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']446 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
447 ····]],447 ····]],
448 ····['nnpottopologypreprocessor_2eh_298',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],448 ····['nnpottopologypreprocessor_2eh_298',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],
449 ····['nnpottopologypreprocessortest_299',·['NNPotTopologyPreprocessorTest',·['../classgmx_1_1test_1_1NNPotTopologyPreprocessorTest.xhtml',·1,·'gmx::test']]],449 ····['nnpottopologypreprocessortest_299',·['NNPotTopologyPreprocessorTest',·['../classgmx_1_1test_1_1NNPotTopologyPreprocessorTest.xhtml',·1,·'gmx::test']]],
450 ····['nnstl_300',·['NNSTL',·['../pairlist__tuning_8cpp.xhtml#aa7bb25f96f0e989b4b7c45d407a1b63c',·1,·'pairlist_tuning.cpp']]],450 ····['nnstl_300',·['NNSTL',·['../pairlist__tuning_8cpp.xhtml#aa7bb25f96f0e989b4b7c45d407a1b63c',·1,·'pairlist_tuning.cpp']]],
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465 ····]],465 ····]],
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467 ····['no_5fvalue_303',·['NO_VALUE',·['../selvalue_8h.xhtml#a70b42b87d434580bf1493591857b8beca4d694119ce83b62d74ff06b5e017dca8',·1,·'selvalue.h']]],467 ····['no_5fvalue_303',·['NO_VALUE',·['../selvalue_8h.xhtml#a70b42b87d434580bf1493591857b8beca4d694119ce83b62d74ff06b5e017dca8',·1,·'selvalue.h']]],
468 ····['noappending_304',·['NoAppending',·['../namespacegmx.xhtml#afd6f3326407d61e4364f4bfeeebe5f03a95924eff082d0bc6529c77794edce7c8',·1,·'gmx']]],468 ····['noappending_304',·['NoAppending',·['../namespacegmx.xhtml#afd6f3326407d61e4364f4bfeeebe5f03a95924eff082d0bc6529c77794edce7c8',·1,·'gmx']]],
469 ····['nocallparameter_305',·['NoCallParameter',·['../classgmx_1_1BuildMDModulesNotifier_3_4_1_1NoCallParameter.xhtml',·1,·'gmx::BuildMDModulesNotifier&lt;&gt;']]],469 ····['nocallparameter_305',·['NoCallParameter',·['../classgmx_1_1BuildMDModulesNotifier_3_4_1_1NoCallParameter.xhtml',·1,·'gmx::BuildMDModulesNotifier&lt;&gt;']]],
470 ····['nocontentsmatch_306',·['NoContentsMatch',·['../classgmx_1_1test_1_1NoContentsMatch.xhtml',·1,·'gmx::test']]],470 ····['nocontentsmatch_306',·['NoContentsMatch',·['../classgmx_1_1test_1_1NoContentsMatch.xhtml',·1,·'gmx::test']]],
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456 ········['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],456 ········['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],
457 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|()'],457 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|()'],
458 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'],458 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'],
459 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)']459 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)']
460 ····]],460 ····]],
461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],
462 ····['operator_7c_7c_137',·['operator||',·['../group__module__simd.xhtml#gab7b197309edc60323a129fa9620a7400',·1,·'gmx::operator||(SimdFIBool·a,·SimdFIBool·b)'], 
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468 ····]],468 ····]],
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470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],
471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],
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473 ····]],473 ····]],
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513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],
514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],
515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],
516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],
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517 ····['option_160',·['option',·['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],518 ········['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],
518 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],519 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()']
519 ········['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'] 
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523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],
524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],
525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],
526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],
527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],
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528 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],529 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],
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582 ····['optionsbehaviorcollection_184',·['optionsbehaviorcollection',·['../classgmx_1_1OptionsBehaviorCollection.xhtml#a74526a586cd629ef3cf99fea463e57f1',·1,·'gmx::OptionsBehaviorCollection::OptionsBehaviorCollection()'],582 ····['optionsbehaviorcollection_184',·['optionsbehaviorcollection',·['../classgmx_1_1OptionsBehaviorCollection.xhtml',·1,·'gmx::OptionsBehaviorCollection'],
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595 ····]],595 ····]],
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60 ····]],60 ····]],
61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],
63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],
64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']
65 ····]],65 ····]],
66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],
Offset 68, 33 lines modifiedOffset 68, 33 lines modified
68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],
69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],
70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],
71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],
72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],
73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],
75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff'], 
76 ········['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff']75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff'],
 76 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff']
77 ····]],77 ····]],
78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],
79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],
80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],
 81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'],
81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()'],82 ········['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()']
82 ········['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'] 
83 ····]],83 ····]],
84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],
85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],
86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'], 
87 ········['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],
 87 ········['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'],
88 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()']88 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()']
89 ····]],89 ····]],
90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],
91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
 92 ····['pairlistsets_58',·['pairlistsets',·['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()'],
92 ····['pairlistsets_58',·['pairlistsets',·['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],93 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],
93 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()'], 
94 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets']94 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets']
95 ····]],95 ····]],
96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
97 ····['pairlisttype_60',·['pairlisttype',·['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType'],97 ····['pairlisttype_60',·['pairlisttype',·['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType'],
98 ········['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType']98 ········['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType']
99 ····]],99 ····]],
100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],
Offset 127, 34 lines modifiedOffset 127, 34 lines modified
127 ····['parallelization_77',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],127 ····['parallelization_77',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],
128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],
130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],
132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],
133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],
134 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'], 
135 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'],134 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'],
136 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],135 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],
137 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],136 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],
138 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],137 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],
 138 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],
139 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],139 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],
140 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param']140 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param']
141 ····]],141 ····]],
142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'],
143 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type'],143 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type'],
144 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],144 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],
145 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'],145 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'],
146 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],146 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],
147 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],147 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],
148 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'], 
149 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'],148 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'],
150 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'],149 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'],
151 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'],150 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'],
152 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml#a479bbfe6aea453e1b93fb6c46b2a586a',·1,·'gmx::NormalDistribution::param_type::param_type()'],151 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml#a479bbfe6aea453e1b93fb6c46b2a586a',·1,·'gmx::NormalDistribution::param_type::param_type()'],
153 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml#a945429fd633cd59c2850bf7cd70d88d5',·1,·'gmx::GammaDistribution::param_type::param_type()']152 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml#a945429fd633cd59c2850bf7cd70d88d5',·1,·'gmx::GammaDistribution::param_type::param_type()'],
 153 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()']
154 ····]],154 ····]],
155 ····['parameterizedmdruntestfixture_85',·['ParameterizedMdrunTestFixture',·['../classgmx_1_1test_1_1ParameterizedMdrunTestFixture.xhtml',·1,·'gmx::test']]],155 ····['parameterizedmdruntestfixture_85',·['ParameterizedMdrunTestFixture',·['../classgmx_1_1test_1_1ParameterizedMdrunTestFixture.xhtml',·1,·'gmx::test']]],
156 ····['parameters_86',·['parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'Defining·parameters'],156 ····['parameters_86',·['parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'Defining·parameters'],
157 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pull__rotation_8cpp_03.xhtml#af94b35600673f3744fbf6caec27ac27c',·1,·'gmx::test::anonymous_namespace{pull_rotation.cpp}::Parameters'],157 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pull__rotation_8cpp_03.xhtml#af94b35600673f3744fbf6caec27ac27c',·1,·'gmx::test::anonymous_namespace{pull_rotation.cpp}::Parameters'],
158 ········['../classgmx_1_1QMMMOptions.xhtml#a087e8b86cad35f25abf237869a360434',·1,·'gmx::QMMMOptions::parameters()'],158 ········['../classgmx_1_1QMMMOptions.xhtml#a087e8b86cad35f25abf237869a360434',·1,·'gmx::QMMMOptions::parameters()'],
159 ········['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#adf8f8c60fbcbe9df7463a22e5180056e',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite::parameters'],159 ········['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#adf8f8c60fbcbe9df7463a22e5180056e',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite::parameters'],
160 ········['../page_mdmodules.xhtml#autotoc_md7',·1,·'Storing·non-mdp·option·module·parameters']160 ········['../page_mdmodules.xhtml#autotoc_md7',·1,·'Storing·non-mdp·option·module·parameters']
Offset 239, 27 lines modifiedOffset 239, 27 lines modified
239 ····['particles_144',·['Interactions·between·lists·of·particles',·['../group__module__listed__forces.xhtml',·1,·'']]],239 ····['particles_144',·['Interactions·between·lists·of·particles',·['../group__module__listed__forces.xhtml',·1,·'']]],
240 ····['particletypenamea_145',·['particleTypeNameA',·['../classSimulationParticle.xhtml#a496a7fbd86890361e14206c021119b06',·1,·'SimulationParticle']]],240 ····['particletypenamea_145',·['particleTypeNameA',·['../classSimulationParticle.xhtml#a496a7fbd86890361e14206c021119b06',·1,·'SimulationParticle']]],
241 ····['particletypenameb_146',·['particleTypeNameB',·['../classSimulationParticle.xhtml#af0b80a3f5d5a292d6a6eca327b34b2cc',·1,·'SimulationParticle']]],241 ····['particletypenameb_146',·['particleTypeNameB',·['../classSimulationParticle.xhtml#af0b80a3f5d5a292d6a6eca327b34b2cc',·1,·'SimulationParticle']]],
242 ····['partition_147',·['partition',·['../structpartition.xhtml',·1,·'']]],242 ····['partition_147',·['partition',·['../structpartition.xhtml',·1,·'']]],
243 ····['partition_2ecpp_148',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],243 ····['partition_2ecpp_148',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],
244 ····['partition_2eh_149',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],244 ····['partition_2eh_149',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],
245 ····['partlyuniformdiagonal_150',·['PartlyUniformDiagonal',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a776ec8348aff2ffd8b62d32d6c54bbeaa38d3d821130dde2b2f53b5301598da2e',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],245 ····['partlyuniformdiagonal_150',·['PartlyUniformDiagonal',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a776ec8348aff2ffd8b62d32d6c54bbeaa38d3d821130dde2b2f53b5301598da2e',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
246 ····['path_2ecpp_151',·['path.cpp',·['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)'],246 ····['path_2ecpp_151',·['path.cpp',·['../path_8cpp.xhtml',·1,·'(Global·Namespace)'],
247 ········['../path_8cpp.xhtml',·1,·'(Global·Namespace)']247 ········['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)']
248 ····]],248 ····]],
249 ····['path_2eh_152',·['path.h',·['../path_8h.xhtml',·1,·'']]],249 ····['path_2eh_152',·['path.h',·['../path_8h.xhtml',·1,·'']]],
250 ····['path_5f_153',·['path_',·['../structgmx_1_1InstallationPrefixInfo.xhtml#a6c5de6c41408d0cf40a07deb808d47fb',·1,·'gmx::InstallationPrefixInfo::path_'], 
251 ········['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#ae864c01ce9412c5674de823de8c0effb',·1,·'gmx::test::TestReferenceChecker::Impl::path_']250 ····['path_5f_153',·['path_',·['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#ae864c01ce9412c5674de823de8c0effb',·1,·'gmx::test::TestReferenceChecker::Impl::path_'],
 251 ········['../structgmx_1_1InstallationPrefixInfo.xhtml#a6c5de6c41408d0cf40a07deb808d47fb',·1,·'gmx::InstallationPrefixInfo::path_']
252 ····]],252 ····]],
253 ····['pause_154',·['Pause',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a105b296a83f9c105355403f3332af50f',·1,·'gmx']]],253 ····['pause_154',·['Pause',·['../namespacegmx.xhtml#aa72f45c17038ea5aae00ba6b17cab901a105b296a83f9c105355403f3332af50f',·1,·'gmx']]],
 254 ····['pbc_155',·['pbc',·['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::Pbc'],
254 ····['pbc_155',·['pbc',·['../classgmx_1_1TrajectoryFrame.xhtml#a582f593e420137d31acaf230d0b0f4c3',·1,·'gmx::TrajectoryFrame::pbc()'],255 ········['../classgmx_1_1TrajectoryFrame.xhtml#a582f593e420137d31acaf230d0b0f4c3',·1,·'gmx::TrajectoryFrame::pbc()'],
255 ········['../structt__swap.xhtml#aa56af1174023261f045e7846a7736772',·1,·'t_swap::pbc'],256 ········['../structt__swap.xhtml#aa56af1174023261f045e7846a7736772',·1,·'t_swap::pbc'],
256 ········['../structgmx__sel__evaluate__t.xhtml#ad45dbdc326186b045973ef3ba68bf677',·1,·'gmx_sel_evaluate_t::pbc'],257 ········['../structgmx__sel__evaluate__t.xhtml#ad45dbdc326186b045973ef3ba68bf677',·1,·'gmx_sel_evaluate_t::pbc'],
257 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::VirtualSitesHandler::Pbc'],258 ········['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::VirtualSitesHandler::Pbc']
258 ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a0fa76fc9cd273da2983f32b5f228e490',·1,·'gmx::Pbc'] 
259 ····]],259 ····]],
260 ····['pbc_2ecpp_156',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],260 ····['pbc_2ecpp_156',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
261 ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)']261 ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
262 ····]],262 ····]],
263 ····['pbc_5f_157',·['pbc_',·['../structgmx_1_1SelMethodEvalContext.xhtml#ab12ab95ec24bd1ca9d76d39ed729005b',·1,·'gmx::SelMethodEvalContext']]],263 ····['pbc_5f_157',·['pbc_',·['../structgmx_1_1SelMethodEvalContext.xhtml#ab12ab95ec24bd1ca9d76d39ed729005b',·1,·'gmx::SelMethodEvalContext']]],
264 ····['pbc_5faiuc_2eh_158',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],264 ····['pbc_5faiuc_2eh_158',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
265 ····['pbc_5faiuc_5fsycl_2eh_159',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],265 ····['pbc_5faiuc_5fsycl_2eh_159',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
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14 ····['qminput_5f_8',·['qmInput_',·['../structgmx_1_1QMMMParameters.xhtml#a7674a3c259e4898d8aa6318e84bc6e30',·1,·'gmx::QMMMParameters']]],14 ····['qminput_5f_8',·['qmInput_',·['../structgmx_1_1QMMMParameters.xhtml#a7674a3c259e4898d8aa6318e84bc6e30',·1,·'gmx::QMMMParameters']]],
15 ····['qminputfilename_9',·['QMInputFileName',·['../structgmx_1_1QMInputFileName.xhtml',·1,·'gmx']]],15 ····['qminputfilename_9',·['QMInputFileName',·['../structgmx_1_1QMInputFileName.xhtml',·1,·'gmx']]],
16 ····['qminputfilename_5f_10',·['qmInputFileName_',·['../structgmx_1_1QMInputFileName.xhtml#a9ac3efe1c20d50610639261468b53431',·1,·'gmx::QMInputFileName']]],16 ····['qminputfilename_5f_10',·['qmInputFileName_',·['../structgmx_1_1QMInputFileName.xhtml#a9ac3efe1c20d50610639261468b53431',·1,·'gmx::QMInputFileName']]],
17 ····['qmmethod_5f_11',·['qmMethod_',·['../structgmx_1_1QMMMParameters.xhtml#a7fda0bb8e38552a5c15354eadf9c23ac',·1,·'gmx::QMMMParameters']]],17 ····['qmmethod_5f_11',·['qmMethod_',·['../structgmx_1_1QMMMParameters.xhtml#a7fda0bb8e38552a5c15354eadf9c23ac',·1,·'gmx::QMMMParameters']]],
18 ····['qmmm_12',·['qmmm',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM'],18 ····['qmmm_12',·['qmmm',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM'],
19 ········['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml#ac2fa5d36187e29b84a608477b6f2777c',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM::QMMM()']19 ········['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMM.xhtml#ac2fa5d36187e29b84a608477b6f2777c',·1,·'gmx::anonymous_namespace{qmmm.cpp}::QMMM::QMMM()']
20 ····]],20 ····]],
21 ····['qmmm_2ecpp_13',·['qmmm.cpp',·['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)'],21 ····['qmmm_2ecpp_13',·['qmmm.cpp',·['../tests_2qmmm_8cpp.xhtml',·1,·'(Global·Namespace)'],
22 ········['../tests_2qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']22 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']
23 ····]],23 ····]],
24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],
26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],
32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']
33 ····]],33 ····]],
34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],
39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],
40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],
41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
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48 ····]],48 ····]],
49 ····['qmmmqmmethod_29',·['QMMMQMMethod',·['../namespacegmx.xhtml#ae35b2c8b377f35030a2b9dfb697e2ea3',·1,·'gmx']]],49 ····['qmmmqmmethod_29',·['QMMMQMMethod',·['../namespacegmx.xhtml#ae35b2c8b377f35030a2b9dfb697e2ea3',·1,·'gmx']]],
50 ····['qmmmsimulationparametersetup_30',·['QMMMSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMMSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}']]],50 ····['qmmmsimulationparametersetup_30',·['QMMMSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02qmmm_8cpp_03_1_1QMMMSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{qmmm.cpp}']]],
51 ····['qmmmtopologyinfo_31',·['QMMMTopologyInfo',·['../structgmx_1_1QMMMTopologyInfo.xhtml',·1,·'gmx']]],51 ····['qmmmtopologyinfo_31',·['QMMMTopologyInfo',·['../structgmx_1_1QMMMTopologyInfo.xhtml',·1,·'gmx']]],
52 ····['qmmmtopologypreprocessor_32',·['qmmmtopologypreprocessor',·['../classgmx_1_1QMMMTopologyPreprocessor.xhtml',·1,·'gmx::QMMMTopologyPreprocessor'],52 ····['qmmmtopologypreprocessor_32',·['qmmmtopologypreprocessor',·['../classgmx_1_1QMMMTopologyPreprocessor.xhtml',·1,·'gmx::QMMMTopologyPreprocessor'],
53 ········['../classgmx_1_1QMMMTopologyPreprocessor.xhtml#a9cbf3dfe9cc1e591acdb6bf5723d54a8',·1,·'gmx::QMMMTopologyPreprocessor::QMMMTopologyPreprocessor()']53 ········['../classgmx_1_1QMMMTopologyPreprocessor.xhtml#a9cbf3dfe9cc1e591acdb6bf5723d54a8',·1,·'gmx::QMMMTopologyPreprocessor::QMMMTopologyPreprocessor()']
54 ····]],54 ····]],
55 ····['qmmmtopologypreprocessor_2ecpp_33',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],55 ····['qmmmtopologypreprocessor_2ecpp_33',·['qmmmtopologypreprocessor.cpp',·['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
56 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']56 ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
57 ····]],57 ····]],
58 ····['qmmmtopologypreprocessor_2eh_34',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],58 ····['qmmmtopologypreprocessor_2eh_34',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]],
59 ····['qmmmtypes_2eh_35',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],59 ····['qmmmtypes_2eh_35',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],
60 ····['qmmultiplicity_5f_36',·['qmMultiplicity_',·['../structgmx_1_1QMMMParameters.xhtml#a7a6462874d94f1796438498baf316205',·1,·'gmx::QMMMParameters']]],60 ····['qmmultiplicity_5f_36',·['qmMultiplicity_',·['../structgmx_1_1QMMMParameters.xhtml#a7a6462874d94f1796438498baf316205',·1,·'gmx::QMMMParameters']]],
61 ····['qmpdb_5f_37',·['qmPdb_',·['../structgmx_1_1QMMMParameters.xhtml#aa744e90d045c43378c79f232ad5569df',·1,·'gmx::QMMMParameters']]],61 ····['qmpdb_5f_37',·['qmPdb_',·['../structgmx_1_1QMMMParameters.xhtml#aa744e90d045c43378c79f232ad5569df',·1,·'gmx::QMMMParameters']]],
62 ····['qmtrans_38',·['qmTrans',·['../classgmx_1_1QMMMInputGenerator.xhtml#afe2a5eef7dcb5e0bb01b2cf091fb54b7',·1,·'gmx::QMMMInputGenerator']]],62 ····['qmtrans_38',·['qmTrans',·['../classgmx_1_1QMMMInputGenerator.xhtml#afe2a5eef7dcb5e0bb01b2cf091fb54b7',·1,·'gmx::QMMMInputGenerator']]],
63 ····['qmtrans_5f_39',·['qmTrans_',·['../structgmx_1_1QMMMParameters.xhtml#a8e2f8f012ba8f6d14a7acc0a6e7fa12a',·1,·'gmx::QMMMParameters']]],63 ····['qmtrans_5f_39',·['qmTrans_',·['../structgmx_1_1QMMMParameters.xhtml#a8e2f8f012ba8f6d14a7acc0a6e7fa12a',·1,·'gmx::QMMMParameters']]],
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86 ········['../structgmx_1_1NBParamGpu.xhtml#a95f083fe552f034c73ef2ad874502bbb',·1,·'gmx::NBParamGpu::rcoulomb_sq']86 ········['../structgmx_1_1NBParamGpu.xhtml#a95f083fe552f034c73ef2ad874502bbb',·1,·'gmx::NBParamGpu::rcoulomb_sq']
87 ····]],87 ····]],
88 ····['rcp_50',·['rcp',·['../group__module__simd.xhtml#ga4c2c3eae5c42d898373ec6e90dd99064',·1,·'gmx::rcp(SimdDouble·x)'],88 ····['rcp_50',·['rcp',·['../group__module__simd.xhtml#ga4c2c3eae5c42d898373ec6e90dd99064',·1,·'gmx::rcp(SimdDouble·x)'],
89 ········['../group__module__simd.xhtml#ga48cb29271cf7ac44a06cfe20e5c29dc2',·1,·'gmx::rcp(SimdFloat·x)']89 ········['../group__module__simd.xhtml#ga48cb29271cf7ac44a06cfe20e5c29dc2',·1,·'gmx::rcp(SimdFloat·x)']
90 ····]],90 ····]],
91 ····['rcut_5fcoulomb_51',·['rcut_coulomb',·['../structpme__setup__t.xhtml#a10b26bc4762a645db835d9e55df7324c',·1,·'pme_setup_t']]],91 ····['rcut_5fcoulomb_51',·['rcut_coulomb',·['../structpme__setup__t.xhtml#a10b26bc4762a645db835d9e55df7324c',·1,·'pme_setup_t']]],
92 ····['rdf_52',·['Rdf',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1Rdf.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],92 ····['rdf_52',·['Rdf',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1Rdf.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],
93 ····['rdf_2ecpp_53',·['rdf.cpp',·['../modules_2rdf_8cpp.xhtml',·1,·'(Global·Namespace)'],93 ····['rdf_2ecpp_53',·['rdf.cpp',·['../tests_2rdf_8cpp.xhtml',·1,·'(Global·Namespace)'],
94 ········['../tests_2rdf_8cpp.xhtml',·1,·'(Global·Namespace)']94 ········['../modules_2rdf_8cpp.xhtml',·1,·'(Global·Namespace)']
95 ····]],95 ····]],
96 ····['rdf_2eh_54',·['rdf.h',·['../rdf_8h.xhtml',·1,·'']]],96 ····['rdf_2eh_54',·['rdf.h',·['../rdf_8h.xhtml',·1,·'']]],
97 ····['rdfmoduledata_55',·['rdfmoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1RdfModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData'], 
98 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1RdfModuleData.xhtml#a1aaa209e9ec17919e6ed89cd2ba508d6',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData::RdfModuleData()']97 ····['rdfmoduledata_55',·['rdfmoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1RdfModuleData.xhtml#a1aaa209e9ec17919e6ed89cd2ba508d6',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData::RdfModuleData()'[·...·truncated·by·diffoscope;·len:·2,·SHA:·39d4b54e0416be65f3fcb26963ff2c5c40153a3b4044179d7d7c8a6ca2f2bf87·...·]
 98 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02rdf_8cpp_03_1_1RdfModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::RdfModuleData']
99 ····]],99 ····]],
100 ····['rdfmoduletest_56',·['RdfModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02rdf_8cpp_03.xhtml#a985b877a009ae52e74963658758768f4',·1,·'gmx::test::anonymous_namespace{rdf.cpp}']]],100 ····['rdfmoduletest_56',·['RdfModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02rdf_8cpp_03.xhtml#a985b877a009ae52e74963658758768f4',·1,·'gmx::test::anonymous_namespace{rdf.cpp}']]],
101 ····['reactionfieldexclusioncorrection_57',·['reactionFieldExclusionCorrection',·['../namespacegmx.xhtml#a43575bc1288fed7c33e5ff7cb9e93f1d',·1,·'gmx']]],101 ····['reactionfieldexclusioncorrection_57',·['reactionFieldExclusionCorrection',·['../namespacegmx.xhtml#a43575bc1288fed7c33e5ff7cb9e93f1d',·1,·'gmx']]],
102 ····['read_5fatype_58',·['read_atype',·['../resall_8h.xhtml#af588ee5713ff8f37bcf2357f531f7b09',·1,·'resall.cpp']]],102 ····['read_5fatype_58',·['read_atype',·['../resall_8h.xhtml#af588ee5713ff8f37bcf2357f531f7b09',·1,·'resall.cpp']]],
103 ····['read_5fedi_59',·['read_edi',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a2cbcc925e9a35783deee0b265aa47833',·1,·'anonymous_namespace{edsam.cpp}']]],103 ····['read_5fedi_59',·['read_edi',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a2cbcc925e9a35783deee0b265aa47833',·1,·'anonymous_namespace{edsam.cpp}']]],
104 ····['read_5fedi_5ffile_60',·['read_edi_file',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a555d9bb4317e61e30b190cef73648f46',·1,·'anonymous_namespace{edsam.cpp}']]],104 ····['read_5fedi_5ffile_60',·['read_edi_file',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a555d9bb4317e61e30b190cef73648f46',·1,·'anonymous_namespace{edsam.cpp}']]],
105 ····['read_5fedvec_61',·['read_edvec',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a07611fa77decbecebabdff242b923c51',·1,·'anonymous_namespace{edsam.cpp}']]],105 ····['read_5fedvec_61',·['read_edvec',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a07611fa77decbecebabdff242b923c51',·1,·'anonymous_namespace{edsam.cpp}']]],
Offset 107, 18 lines modifiedOffset 107, 18 lines modified
107 ····['read_5fpull_5fxf_63',·['read_pull_xf',·['../gmx__wham_8cpp.xhtml#a3b6881c8a81744c8faa70b8a461a5cd1',·1,·'gmx_wham.cpp']]],107 ····['read_5fpull_5fxf_63',·['read_pull_xf',·['../gmx__wham_8cpp.xhtml#a3b6881c8a81744c8faa70b8a461a5cd1',·1,·'gmx_wham.cpp']]],
108 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],108 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],
109 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],109 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],
110 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],110 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],
111 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],111 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],
112 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],112 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],
113 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],113 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],
114 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],114 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()'],
115 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'], 
116 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],115 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],
117 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()']116 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'],
 117 ········['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()']
118 ····]],118 ····]],
119 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],119 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],
120 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],120 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],
121 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],121 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],
122 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'],122 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'],
123 ········['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()']123 ········['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()']
124 ····]],124 ····]],
Offset 129, 16 lines modifiedOffset 129, 16 lines modified
129 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],129 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
130 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)'],130 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)'],
131 ········['../classgmx_1_1TextReader.xhtml#ab60a4095bedb4918dda1e2071bf36454',·1,·'gmx::TextReader::readFileToString(const·std::filesystem::path·&amp;filename)']131 ········['../classgmx_1_1TextReader.xhtml#ab60a4095bedb4918dda1e2071bf36454',·1,·'gmx::TextReader::readFileToString(const·std::filesystem::path·&amp;filename)']
132 ····]],132 ····]],
133 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],133 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],
134 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],134 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],
135 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],135 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],
 136 ····['reading_83',·['reading',·['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()'],
136 ····['reading_83',·['reading',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()'],137 ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()']
137 ········['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()'] 
138 ····]],138 ····]],
139 ····['readinp_2ecpp_84',·['readinp.cpp',·['../tests_2readinp_8cpp.xhtml',·1,·'']]],139 ····['readinp_2ecpp_84',·['readinp.cpp',·['../tests_2readinp_8cpp.xhtml',·1,·'']]],
140 ····['readint32_85',·['readInt32',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#afee39969b1f4ed1ce509bbd6bd8e9bd9',·1,·'gmx::test::TestReferenceChecker']]],140 ····['readint32_85',·['readInt32',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#afee39969b1f4ed1ce509bbd6bd8e9bd9',·1,·'gmx::test::TestReferenceChecker']]],
141 ····['readint64_86',·['readInt64',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a596176a0591133ef4331185c29cdf9c9',·1,·'gmx::test::TestReferenceChecker']]],141 ····['readint64_86',·['readInt64',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a596176a0591133ef4331185c29cdf9c9',·1,·'gmx::test::TestReferenceChecker']]],
142 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],142 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],
143 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],143 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],
144 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()'],144 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()'],
Offset 146, 36 lines modifiedOffset 146, 36 lines modified
146 ········['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()']146 ········['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()']
147 ····]],147 ····]],
148 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],148 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],
149 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],149 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
150 ········['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],150 ········['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
151 ········['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']151 ········['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']
152 ····]],152 ····]],
 153 ····['readline_92',·['readline',·['../classgmx_1_1TextInputFile.xhtml#a22384d24f47f270203e74d1b8f765234',·1,·'gmx::TextInputFile::readLine()'],
153 ····['readline_92',·['readline',·['../classgmx_1_1StandardInputStream.xhtml#a1c31a636987618552b18e9ec72c77400',·1,·'gmx::StandardInputStream::readLine()'],154 ········['../classgmx_1_1StandardInputStream.xhtml#a1c31a636987618552b18e9ec72c77400',·1,·'gmx::StandardInputStream::readLine()'],
154 ········['../classgmx_1_1TextInputFile.xhtml#a22384d24f47f270203e74d1b8f765234',·1,·'gmx::TextInputFile::readLine()'], 
155 ········['../classgmx_1_1StringInputStream.xhtml#a5312438a2d0d1ff527c027a4d7b5181d',·1,·'gmx::StringInputStream::readLine()'],155 ········['../classgmx_1_1StringInputStream.xhtml#a5312438a2d0d1ff527c027a4d7b5181d',·1,·'gmx::StringInputStream::readLine()'],
156 ········['../classgmx_1_1TextReader.xhtml#a8a4578260ea39592894870109d92e723',·1,·'gmx::TextReader::readLine()'],156 ········['../classgmx_1_1TextReader.xhtml#a8a4578260ea39592894870109d92e723',·1,·'gmx::TextReader::readLine()'],
157 ········['../classgmx_1_1TextInputStream.xhtml#addd5947a5b6f6065db02467d8f3c5137',·1,·'gmx::TextInputStream::readLine()']157 ········['../classgmx_1_1TextInputStream.xhtml#addd5947a5b6f6065db02467d8f3c5137',·1,·'gmx::TextInputStream::readLine()']
158 ····]],158 ····]],
159 ····['readlineimpl_93',·['readLineImpl',·['../namespacegmx_1_1anonymous__namespace_02filestream_8cpp_03.xhtml#a790ebb9ff1c047f07a40d8e253abc7e5',·1,·'gmx::anonymous_namespace{filestream.cpp}']]],159 ····['readlineimpl_93',·['readLineImpl',·['../namespacegmx_1_1anonymous__namespace_02filestream_8cpp_03.xhtml#a790ebb9ff1c047f07a40d8e253abc7e5',·1,·'gmx::anonymous_namespace{filestream.cpp}']]],
 160 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'],
160 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()'],161 ········['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()'],
161 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'], 
162 ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()']162 ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()']
163 ····]],163 ····]],
164 ····['readpullcoordselection_95',·['readPullCoordSelection',·['../gmx__wham_8cpp.xhtml#aa2af34b5c91653320b8332bbf308d772',·1,·'gmx_wham.cpp']]],164 ····['readpullcoordselection_95',·['readPullCoordSelection',·['../gmx__wham_8cpp.xhtml#aa2af34b5c91653320b8332bbf308d772',·1,·'gmx_wham.cpp']]],
165 ····['readreferencedatafile_96',·['readReferenceDataFile',·['../group__module__testutils.xhtml#gaca906b8c921bc54965ffa4750d6bfbc9',·1,·'gmx::test']]],165 ····['readreferencedatafile_96',·['readReferenceDataFile',·['../group__module__testutils.xhtml#gaca906b8c921bc54965ffa4750d6bfbc9',·1,·'gmx::test']]],
166 ····['readreferencedensityfromfile_97',·['readReferenceDensityFromFile',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#ad4e222142529fd47f5bef11ea129fc7f',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],166 ····['readreferencedensityfromfile_97',·['readReferenceDensityFromFile',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#ad4e222142529fd47f5bef11ea129fc7f',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]],
167 ····['readresiduedatabase_98',·['readResidueDatabase',·['../resall_8h.xhtml#a50a12a882cf1a437fca36c47ce6d23d1',·1,·'resall.cpp']]],167 ····['readresiduedatabase_98',·['readResidueDatabase',·['../resall_8h.xhtml#a50a12a882cf1a437fca36c47ce6d23d1',·1,·'resall.cpp']]],
168 ····['readstate_99',·['readstate',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a14e15e0a9533b3a6d71508a927f0e5bd',·1,·'gmx::ColvarsForceProviderState::readState()'],168 ····['readstate_99',·['readstate',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a14e15e0a9533b3a6d71508a927f0e5bd',·1,·'gmx::ColvarsForceProviderState::readState()'],
169 ········['../structgmx_1_1DensityFittingForceProviderState.xhtml#a2911de3619c7d463438ddd52813ffde5',·1,·'gmx::DensityFittingForceProviderState::readState()']169 ········['../structgmx_1_1DensityFittingForceProviderState.xhtml#a2911de3619c7d463438ddd52813ffde5',·1,·'gmx::DensityFittingForceProviderState::readState()']
170 ····]],170 ····]],
171 ····['readstring_100',·['readString',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a38fcda0cfed63c609eeffe629101ce42',·1,·'gmx::test::TestReferenceChecker']]],171 ····['readstring_100',·['readString',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a38fcda0cfed63c609eeffe629101ce42',·1,·'gmx::test::TestReferenceChecker']]],
172 ····['readstringtableentry_101',·['readstringtableentry',·['../classStringTableEntry.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'StringTableEntry::readStringTableEntry'],172 ····['readstringtableentry_101',·['readstringtableentry',·['../classStringTableEntry.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'StringTableEntry::readStringTableEntry'],
 173 ········['../symtab_8h.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],
173 ········['../symtab_8cpp.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'],174 ········['../symtab_8cpp.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp']
174 ········['../symtab_8h.xhtml#a14c793043038dfc8081c875bcce99bb4',·1,·'readStringTableEntry(gmx::ISerializer·*serializer,·const·StringTable·&amp;table):&#160;symtab.cpp'] 
175 ····]],175 ····]],
176 ····['readtprinput_102',·['readTprInput',·['../namespacegmx_1_1test.xhtml#ad13e4bee2ef08b08bb7cbe99b5046f64',·1,·'gmx::test']]],176 ····['readtprinput_102',·['readTprInput',·['../namespacegmx_1_1test.xhtml#ad13e4bee2ef08b08bb7cbe99b5046f64',·1,·'gmx::test']]],
177 ····['readuchar_103',·['readUChar',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a74807c9db3ebc891f38a20494d2223eb',·1,·'gmx::test::TestReferenceChecker']]],177 ····['readuchar_103',·['readUChar',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a74807c9db3ebc891f38a20494d2223eb',·1,·'gmx::test::TestReferenceChecker']]],
178 ····['readuserpmfandtargetdistribution_104',·['readUserPmfAndTargetDistribution',·['../namespacegmx.xhtml#a4cf14b3e4d45a42254ed8d42c1d7685c',·1,·'gmx']]],178 ····['readuserpmfandtargetdistribution_104',·['readUserPmfAndTargetDistribution',·['../namespacegmx.xhtml#a4cf14b3e4d45a42254ed8d42c1d7685c',·1,·'gmx']]],
179 ····['readvmdforces_105',·['readVmdForces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8727e2dcdf140c43313d7bc1d35a24df',·1,·'gmx::ImdSession::Impl']]],179 ····['readvmdforces_105',·['readVmdForces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8727e2dcdf140c43313d7bc1d35a24df',·1,·'gmx::ImdSession::Impl']]],
180 ····['readwriteflags_106',·['readWriteFlags',·['../classgmx_1_1FileNameOption.xhtml#ae5dac2a5fb815fb82f3671a4276ff127',·1,·'gmx::FileNameOption']]],180 ····['readwriteflags_106',·['readWriteFlags',·['../classgmx_1_1FileNameOption.xhtml#ae5dac2a5fb815fb82f3671a4276ff127',·1,·'gmx::FileNameOption']]],
181 ····['readxvgdatainternal_107',·['readXvgDataInternal',·['../namespaceanonymous__namespace_02xvgr_8cpp_03.xhtml#a7eaa192880e876ce77c90f5d9621ed49',·1,·'anonymous_namespace{xvgr.cpp}']]],181 ····['readxvgdatainternal_107',·['readXvgDataInternal',·['../namespaceanonymous__namespace_02xvgr_8cpp_03.xhtml#a7eaa192880e876ce77c90f5d9621ed49',·1,·'anonymous_namespace{xvgr.cpp}']]],
Offset 222, 47 lines modifiedOffset 222, 47 lines modified
222 ····['recorded_139',·['Recorded',·['../namespacegmx.xhtml#a936952a1a6d4f2d24c06259e1b03647ba5b6352d4af330defb41d0bba3929b885',·1,·'gmx']]],222 ····['recorded_139',·['Recorded',·['../namespacegmx.xhtml#a936952a1a6d4f2d24c06259e1b03647ba5b6352d4af330defb41d0bba3929b885',·1,·'gmx']]],
223 ····['recording_140',·['Recording',·['../namespacegmx.xhtml#a936952a1a6d4f2d24c06259e1b03647bac5564d2e8b8e0ae08bf4363f2b947166',·1,·'gmx']]],223 ····['recording_140',·['Recording',·['../namespacegmx.xhtml#a936952a1a6d4f2d24c06259e1b03647bac5564d2e8b8e0ae08bf4363f2b947166',·1,·'gmx']]],
224 ····['recordtostring_141',·['recordToString',·['../namespacegmx.xhtml#a0958e8470ac61787d0329f347479255b',·1,·'gmx']]],224 ····['recordtostring_141',·['recordToString',·['../namespacegmx.xhtml#a0958e8470ac61787d0329f347479255b',·1,·'gmx']]],
225 ····['recvffrompme_142',·['recvFFromPme',·['../pme__pp_8cpp.xhtml#a049575e0b3d700a685b6cd141b140990',·1,·'pme_pp.cpp']]],225 ····['recvffrompme_142',·['recvFFromPme',·['../pme__pp_8cpp.xhtml#a049575e0b3d700a685b6cd141b140990',·1,·'pme_pp.cpp']]],
226 ····['redirector_5f_143',·['redirector_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#afc06e7b47940374cf61927782ad79efc',·1,·'gmx::FileNameOptionManager::Impl']]],226 ····['redirector_5f_143',·['redirector_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#afc06e7b47940374cf61927782ad79efc',·1,·'gmx::FileNameOptionManager::Impl']]],
227 ····['redirectstringtostdin_144',·['redirectStringToStdin',·['../classgmx_1_1test_1_1StdioTestHelper.xhtml#a584c8b801f18cd4fdc924d54d7b347fb',·1,·'gmx::test::StdioTestHelper']]],227 ····['redirectstringtostdin_144',·['redirectStringToStdin',·['../classgmx_1_1test_1_1StdioTestHelper.xhtml#a584c8b801f18cd4fdc924d54d7b347fb',·1,·'gmx::test::StdioTestHelper']]],
228 ····['redistribute_2eh_145',·['redistribute.h',·['../redistribute_8h.xhtml',·1,·'']]],228 ····['redistribute_2eh_145',·['redistribute.h',·['../redistribute_8h.xhtml',·1,·'']]],
229 ····['reduce_146',·['reduce',·['../group__module__simd.xhtml#ga5ee526de5755cc7bb8d7c46c532483e4',·1,·'gmx::reduce(Simd4Double·a)'],229 ····['reduce_146',·['reduce',·['../group__module__simd.xhtml#ga55d2bf9090a7a9aed6e4b1f6391ef844',·1,·'gmx::reduce(SimdFloat·a)'],
230 ········['../group__module__simd.xhtml#ga072c4a40acda5dbbd28687df84331335',·1,·'gmx::reduce(Simd4Float·a)'],230 ········['../namespacegmx.xhtml#aa4a37558328ab029203170ad4c6c4d01',·1,·'gmx::reduce(float·a)'],
 231 ········['../namespacegmx.xhtml#a157983d90620412d404e8a77d1ddbd0f',·1,·'gmx::reduce(double·a)'],
231 ········['../group__module__simd.xhtml#ga62d67c8b5c817dab3ee4acdd5779c14b',·1,·'gmx::reduce(SimdDouble·a)'],232 ········['../group__module__simd.xhtml#ga62d67c8b5c817dab3ee4acdd5779c14b',·1,·'gmx::reduce(SimdDouble·a)'],
232 ········['../group__module__simd.xhtml#ga55d2bf9090a7a9aed6e4b1f6391ef844',·1,·'gmx::reduce(SimdFloat·a)'],233 ········['../group__module__simd.xhtml#ga072c4a40acda5dbbd28687df84331335',·1,·'gmx::reduce(Simd4Float·a)'],
233 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#a7774c66a2b407ff1cce0e6bea9ec5ca3',·1,·'gmx::ThreadedForceBuffer::reduce(gmx::ForceWithShiftForces·*forceWithShiftForces,·real·*ener,·gmx_grppairener_t·*grpp,·gmx::ArrayRef&lt;·real·&gt;·dvdl,·const·gmx::StepWorkload·&[·...·truncated·by·diffoscope;·len:·37,·SHA:·03719c075462463161864a732f759541b0f148c4996dc3cc2feb15a5108da12d·...·])'],234 ········['../group__module__simd.xhtml#ga5ee526de5755cc7bb8d7c46c532483e4',·1,·'gmx::reduce(Simd4Double·a)'],
234 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#a55aa2bcd64727def69370209a8e4d1bc',·1,·'gmx::ThreadedForceBuffer::reduce(gmx::ForceWithVirial·*forceWithVirial,·real·*ener,·gmx_grppairener_t·*grpp,·gmx::ArrayRef&lt;·real·&gt;·dvdl,·const·gmx::StepWorkload·&amp;stepWork,·int·reductionBeginIndex)'],235 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#a55aa2bcd64727def69370209a8e4d1bc',·1,·'gmx::ThreadedForceBuffer::reduce(gmx::ForceWithVirial·*forceWithVirial,·real·*ener,·gmx_grppairener_t·*grpp,·gmx::ArrayRef&lt;·real·&gt;·dvdl,·const·gmx::StepWorkload·&amp;stepWork,·int·reductionBeginIndex)'],
 236 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#a7774c66a2b407ff1cce0e6bea9ec5ca3',·1,·'gmx::ThreadedForceBuffer::reduce(gmx::ForceWithShiftForces·*forceWithShiftForces,·real·*ener,·gmx_grppairener_t·*grpp,·gmx::ArrayRef&lt;·real·&gt;·dvdl,·const·gmx::StepWorkload·&amp;stepWork,·int·reductionBeginIndex)']
235 ········['../namespacegmx.xhtml#aa4a37558328ab029203170ad4c6c4d01',·1,·'gmx::reduce(float·a)'], 
236 ········['../namespacegmx.xhtml#a157983d90620412d404e8a77d1ddbd0f',·1,·'gmx::reduce(double·a)'] 
237 ····]],237 ····]],
238 ····['reduce_5fenergies_5fover_5flists_147',·['reduce_energies_over_lists',·['../namespacegmx.xhtml#a9a6140c185acf41158fecb86654d099e',·1,·'gmx']]],238 ····['reduce_5fenergies_5fover_5flists_147',·['reduce_energies_over_lists',·['../namespacegmx.xhtml#a9a6140c185acf41158fecb86654d099e',·1,·'gmx']]],
239 ····['reduceatomforces_148',·['reduceAtomForces',·['../pme__gather__sycl_8cpp.xhtml#a80583d62a57d33aa6273af17077c6824',·1,·'pme_gather_sycl.cpp']]],239 ····['reduceatomforces_148',·['reduceAtomForces',·['../pme__gather__sycl_8cpp.xhtml#a80583d62a57d33aa6273af17077c6824',·1,·'pme_gather_sycl.cpp']]],
240 ····['reduceenergiesanddvdl_149',·['reduceEnergiesAndDvdl',·['../classgmx_1_1ThreadedForceBuffer.xhtml#a1cea1fc1587955e216487f105ff730b5',·1,·'gmx::ThreadedForceBuffer']]],240 ····['reduceenergiesanddvdl_149',·['reduceEnergiesAndDvdl',·['../classgmx_1_1ThreadedForceBuffer.xhtml#a1cea1fc1587955e216487f105ff730b5',·1,·'gmx::ThreadedForceBuffer']]],
241 ····['reduceenergywarpshuffle_150',·['reduceEnergyWarpShuffle',·['../namespacegmx.xhtml#a3da842b9a19f6597f9362c5ce45cb234',·1,·'gmx']]],241 ····['reduceenergywarpshuffle_150',·['reduceEnergyWarpShuffle',·['../namespacegmx.xhtml#a3da842b9a19f6597f9362c5ce45cb234',·1,·'gmx']]],
242 ····['reduceforcei_151',·['reduceForceI',·['../namespacegmx.xhtml#a5aa31b7d8b3fbf5596365f7c52d9f75a',·1,·'gmx']]],242 ····['reduceforcei_151',·['reduceForceI',·['../namespacegmx.xhtml#a5aa31b7d8b3fbf5596365f7c52d9f75a',·1,·'gmx']]],
243 ····['reduceforceiandfshift_152',·['reduceForceIAndFShift',·['../namespacegmx.xhtml#a43a4233e627ec67a4f7082a15294ca27',·1,·'gmx']]],243 ····['reduceforceiandfshift_152',·['reduceForceIAndFShift',·['../namespacegmx.xhtml#a43a4233e627ec67a4f7082a15294ca27',·1,·'gmx']]],
244 ····['reduceforceiandfshiftgeneric_153',·['reduceForceIAndFShiftGeneric',·['../namespacegmx.xhtml#a5f7ff281f1f88cb014ba42e0200e6aa0',·1,·'gmx']]],244 ····['reduceforceiandfshiftgeneric_153',·['reduceForceIAndFShiftGeneric',·['../namespacegmx.xhtml#a5f7ff281f1f88cb014ba42e0200e6aa0',·1,·'gmx']]],
245 ····['reduceforceiandfshiftshuffles_154',·['reduceforceiandfshiftshuffles',·['../namespacegmx.xhtml#ae004a6bfac4b3016d2d63efdcd369ada',·1,·'gmx::reduceForceIAndFShiftShuffles(const·FCiBufferWrapperX·&amp;fCiBufX,·const·FCiBufferWrapperY·&amp;fCiBufY,·const·FCiBufferWrapperZ·&amp;fCiBufZ,·const·bool·calcFShift,·const·sycl::nd_item&lt;·3·&gt;·itemIdx,·const·int·tidxi,·const·int·tidxj,·const·int·sci,·const·int·shift,·sycl::global_ptr&lt;·Float3·&gt;·a_f,·sycl::global_ptr&lt;·Float3·&gt;·a_fShift)'],245 ····['reduceforceiandfshiftshuffles_154',·['reduceforceiandfshiftshuffles',·['../namespacegmx.xhtml#a84a0ae80b5a2eb8ce9b33980e39fac7c',·1,·'gmx::reduceForceIAndFShiftShuffles(const·FCiBufferWrapperX·&amp;fCiBufX,·const·FCiBufferWrapperY·&amp;fCiBufY,·const·FCiBufferWrapperZ·&amp;fCiBufZ,·const·bool·calcFShift,·const·sycl::nd_item&lt;·3·&gt;·itemIdx,·const·int·tidxi,·const·int·tidxj,·const·int·sci,·const·int·shift,·sycl::global_ptr&lt;·Float3·&gt;·a_f,·sycl::global_ptr&lt;·Float3·&gt;·a_fShift)'],
246 ········['../namespacegmx.xhtml#a84a0ae80b5a2eb8ce9b33980e39fac7c',·1,·'gmx::reduceForceIAndFShiftShuffles(const·FCiBufferWrapperX·&amp;fCiBufX,·const·FCiBufferWrapperY·&amp;fCiBufY,·const·FCiBufferWrapperZ·&amp;fCiBufZ,·const·bool·calcFShift,·const·sycl::nd_item&lt;·3·&gt;·itemIdx,·const·int·tidxi,·const·int·tidxj,·const·int·sci,·const·int·shift,·sycl::global_ptr&lt;·Float3·&gt;·a_f,·sycl::global_ptr&lt;·Float3·&gt;·a_fShift)']246 ········['../namespacegmx.xhtml#ae004a6bfac4b3016d2d63efdcd369ada',·1,·'gmx::reduceForceIAndFShiftShuffles(const·FCiBufferWrapperX·&amp;fCiBufX,·const·FCiBufferWrapperY·&amp;fCiBufY,·const·FCiBufferWrapperZ·&amp;fCiBufZ,·const·bool·calcFShift,·const·sycl::nd_item&lt;·3·&gt;·itemIdx,·const·int·tidxi,·const·int·tidxj,·const·int·sci,·const·int·shift,·sycl::global_ptr&lt;·Float3·&gt;·a_f,·sycl::global_ptr&lt;·Float3·&gt;·a_fShift)']
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Offset 58, 40 lines modifiedOffset 58, 40 lines modified
58 ····['sandrtty_39',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],58 ····['sandrtty_39',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],
59 ····['sanegridsize_40',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],59 ····['sanegridsize_40',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
60 ····['sanepmeorder_41',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],60 ····['sanepmeorder_41',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
61 ····['sansdebye_42',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()'],61 ····['sansdebye_42',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()'],
62 ········['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye']62 ········['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye']
63 ····]],63 ····]],
64 ····['sasa_43',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],64 ····['sasa_43',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],
65 ····['sasa_2ecpp_44',·['sasa.cpp',·['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],65 ····['sasa_2ecpp_44',·['sasa.cpp',·['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],
66 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']66 ········['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
67 ····]],67 ····]],
68 ····['sasa_2eh_45',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],68 ····['sasa_2eh_45',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
69 ····['sasamoduledata_46',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModuleData()'],69 ····['sasamoduledata_46',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModuleData()'],
70 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData']70 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData']
71 ····]],71 ····]],
72 ····['sasamoduletest_47',·['SasaModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02sasa_8cpp_03.xhtml#a6ab13a9087286dbfd65219d20022e6e1',·1,·'gmx::test::anonymous_namespace{sasa.cpp}']]],72 ····['sasamoduletest_47',·['SasaModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02sasa_8cpp_03.xhtml#a6ab13a9087286dbfd65219d20022e6e1',·1,·'gmx::test::anonymous_namespace{sasa.cpp}']]],
73 ····['save_5fcalloc_48',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],73 ····['save_5fcalloc_48',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],
74 ····['save_5fcalloc_5faligned_49',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],74 ····['save_5fcalloc_5faligned_49',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],
75 ····['save_5ffree_50',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],75 ····['save_5ffree_50',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],
76 ····['save_5ffree_5faligned_51',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],76 ····['save_5ffree_5faligned_51',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],
77 ····['save_5fmalloc_52',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],77 ····['save_5fmalloc_52',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],
78 ····['save_5fmalloc_5faligned_53',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],78 ····['save_5fmalloc_5faligned_53',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],
79 ····['save_5frealloc_54',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],79 ····['save_5frealloc_54',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],
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 81 ········['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'],
80 ····['savecheckpointstate_55',·['savecheckpointstate',·['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'], 
81 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'], 
82 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#aa81f8ca220fe300d1c4ea3aa561c7d4d',·1,·'gmx::ExpandedEnsembleElement::saveCheckpointState()'], 
83 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a7215fd9b674948475b7a7394a34cf3e9',·1,·'gmx::FirstOrderPressureCoupling::saveCheckpointState()'], 
84 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()'],82 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()'],
85 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()'],83 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()'],
86 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'],84 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'],
87 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()'], 
88 ········['../classgmx_1_1MttkData.xhtml#acf983f5ad30b4b8792883b4a69799566',·1,·'gmx::MttkData::saveCheckpointState()'], 
89 ········['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'], 
90 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()']85 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()'],
 86 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'],
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 89 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'],
 90 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()']
91 ····]],91 ····]],
92 ····['saveedsampointer_56',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],92 ····['saveedsampointer_56',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],
93 ····['saxsdebye_57',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()'],93 ····['saxsdebye_57',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()'],
94 ········['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye']94 ········['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye']
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97 ····['sblock_59',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],97 ····['sblock_59',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],
Offset 120, 71 lines modifiedOffset 120, 71 lines modified
120 ····['sc_5fgpunumclusterpercellx_82',·['sc_gpuNumClusterPerCellX',·['../namespacegmx.xhtml#ab7199026076a9a98316402a6a771a4b6',·1,·'gmx']]],120 ····['sc_5fgpunumclusterpercellx_82',·['sc_gpuNumClusterPerCellX',·['../namespacegmx.xhtml#ab7199026076a9a98316402a6a771a4b6',·1,·'gmx']]],
121 ····['sc_5fgpunumclusterpercelly_83',·['sc_gpuNumClusterPerCellY',·['../namespacegmx.xhtml#a6ee970be4850758013a1f72fa03cb8c4',·1,·'gmx']]],121 ····['sc_5fgpunumclusterpercelly_83',·['sc_gpuNumClusterPerCellY',·['../namespacegmx.xhtml#a6ee970be4850758013a1f72fa03cb8c4',·1,·'gmx']]],
122 ····['sc_5fgpunumclusterpercellz_84',·['sc_gpuNumClusterPerCellZ',·['../namespacegmx.xhtml#ae206fb5ebac7082694cf15a78c8b7053',·1,·'gmx']]],122 ····['sc_5fgpunumclusterpercellz_84',·['sc_gpuNumClusterPerCellZ',·['../namespacegmx.xhtml#ae206fb5ebac7082694cf15a78c8b7053',·1,·'gmx']]],
123 ····['sc_5fgpuparallelexecutionwidth_85',·['sc_gpuParallelExecutionWidth',·['../namespacegmx.xhtml#a9ecec7ee7847a6e0bf65447241ebd6c0',·1,·'gmx']]],123 ····['sc_5fgpuparallelexecutionwidth_85',·['sc_gpuParallelExecutionWidth',·['../namespacegmx.xhtml#a9ecec7ee7847a6e0bf65447241ebd6c0',·1,·'gmx']]],
124 ····['sc_5fgpusplitjclustersize_86',·['sc_gpuSplitJClusterSize',·['../namespacegmx.xhtml#adf9e2c70b2c60d94f56fec5823285ef3',·1,·'gmx']]],124 ····['sc_5fgpusplitjclustersize_86',·['sc_gpuSplitJClusterSize',·['../namespacegmx.xhtml#adf9e2c70b2c60d94f56fec5823285ef3',·1,·'gmx']]],
125 ····['sc_5fhavenbnxmsimd2xmmkernels_87',·['sc_haveNbnxmSimd2xmmKernels',·['../nbnxm__simd_8h.xhtml#ac11fe49ef54d157502af1453777bb647',·1,·'nbnxm_simd.h']]],125 ····['sc_5fhavenbnxmsimd2xmmkernels_87',·['sc_haveNbnxmSimd2xmmKernels',·['../nbnxm__simd_8h.xhtml#ac11fe49ef54d157502af1453777bb647',·1,·'nbnxm_simd.h']]],
126 ····['sc_5fhavenbnxmsimd4xmkernels_88',·['sc_haveNbnxmSimd4xmKernels',·['../nbnxm__simd_8h.xhtml#a81d865f76ee91e7ded396efbbc90ac4f',·1,·'nbnxm_simd.h']]],126 ····['sc_5fhavenbnxmsimd4xmkernels_88',·['sc_haveNbnxmSimd4xmKernels',·['../nbnxm__simd_8h.xhtml#a81d865f76ee91e7ded396efbbc90ac4f',·1,·'nbnxm_simd.h']]],
127 ····['sc_5ficlustersize_89',·['sc_iclustersize',·['../namespacegmx.xhtml#ad5df7dcd80bf26c8f31fb76780234400',·1,·'gmx::sc_iClusterSize()'], 
128 ········['../nbnxm__simd_8h.xhtml#aa414705a24a611a6ebd70074354224fa',·1,·'sc_iClusterSize():&#160;nbnxm_simd.h']127 ····['sc_5ficlustersize_89',·['sc_iclustersize',·['../nbnxm__simd_8h.xhtml#aa414705a24a611a6ebd70074354224fa',·1,·'sc_iClusterSize():&#160;nbnxm_simd.h'],
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131 ····['sc_5fjclustersize_91',·['sc_jClusterSize',·['../namespacegmx.xhtml#a858c5384b6739a1bd6989e44f942b5fc',·1,·'gmx']]],131 ····['sc_5fjclustersize_91',·['sc_jClusterSize',·['../namespacegmx.xhtml#a858c5384b6739a1bd6989e44f942b5fc',·1,·'gmx']]],
132 ····['sc_5flayouttype_92',·['sc_layoutType',·['../namespacegmx.xhtml#af1c005d1c11ecc155592ef473cc832ee',·1,·'gmx']]],132 ····['sc_5flayouttype_92',·['sc_layoutType',·['../namespacegmx.xhtml#af1c005d1c11ecc155592ef473cc832ee',·1,·'gmx']]],
133 ····['sc_5fmaxdonorsperresidue_93',·['sc_maxDonorsPerResidue',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1ResInfo.xhtml#a295e4dc2a8943f881df3febe63b6572f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo']]],133 ····['sc_5fmaxdonorsperresidue_93',·['sc_maxDonorsPerResidue',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1ResInfo.xhtml#a295e4dc2a8943f881df3febe63b6572f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo']]],
134 ····['sc_5fmaxnumizones_94',·['sc_maxNumIZones',·['../namespacegmx.xhtml#ad29c98a8ee43ed2ed812f11630f96a62',·1,·'gmx']]],134 ····['sc_5fmaxnumizones_94',·['sc_maxNumIZones',·['../namespacegmx.xhtml#ad29c98a8ee43ed2ed812f11630f96a62',·1,·'gmx']]],
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136 ····['sc_5fncolvarsatomsname_5f_96',·['sc_nColvarsAtomsName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#ac0a5afaf0b4b6ab472ce670fb17acd1e',·1,·'gmx::ColvarsForceProviderState']]],136 ····['sc_5fncolvarsatomsname_5f_96',·['sc_nColvarsAtomsName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#ac0a5afaf0b4b6ab472ce670fb17acd1e',·1,·'gmx::ColvarsForceProviderState']]],
137 ····['sc_5fnumenergygroups_97',·['sc_numenergygroups',·['../structgmx_1_1test_1_1TestSystem.xhtml#a6a0f14e33f368f96c0f3c4128e3c3f2c',·1,·'gmx::test::TestSystem::sc_numEnergyGroups'], 
138 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ad47ab0f836918e5019cfc367f1efbda3',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::sc_numEnergyGroups']137 ····['sc_5fnumenergygroups_97',·['sc_numenergygroups',·['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ad47ab0f836918e5019cfc367f1efbda3',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::sc_numEnergyGroups'],
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141 ····['sc_5fnumgridsljlb_99',·['sc_numGridsLJLB',·['../pme__internal_8h.xhtml#afae6cc23490d753bc9f480193607a2bd',·1,·'pme_internal.h']]],141 ····['sc_5fnumgridsljlb_99',·['sc_numGridsLJLB',·['../pme__internal_8h.xhtml#afae6cc23490d753bc9f480193607a2bd',·1,·'pme_internal.h']]],
142 ····['sc_5fpressurematrixtypenames_100',·['sc_pressureMatrixTypeNames',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#ad8d195071fbeafd96f845f9bd83ddf5f',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],142 ····['sc_5fpressurematrixtypenames_100',·['sc_pressureMatrixTypeNames',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#ad8d195071fbeafd96f845f9bd83ddf5f',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
143 ····['sc_5frefdatafilenamemaker_101',·['sc_refDataFilenameMaker',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a612cdac13c1c842588ae6f765b4c8158',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}']]],143 ····['sc_5frefdatafilenamemaker_101',·['sc_refDataFilenameMaker',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a612cdac13c1c842588ae6f765b4c8158',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}']]],
144 ····['sc_5fskewnessmargin_102',·['sc_skewnessMargin',·['../pbc_8cpp.xhtml#a01ddfce19291b0878ba36bd9285a1e9d',·1,·'pbc.cpp']]],144 ····['sc_5fskewnessmargin_102',·['sc_skewnessMargin',·['../pbc_8cpp.xhtml#a01ddfce19291b0878ba36bd9285a1e9d',·1,·'pbc.cpp']]],
145 ····['sc_5fsubgroupsize_103',·['sc_subGroupSize',·['../pme__gpu__grid__sycl_8cpp.xhtml#a3bb4a447d7735630217c8d9b6a5e1963',·1,·'pme_gpu_grid_sycl.cpp']]],145 ····['sc_5fsubgroupsize_103',·['sc_subGroupSize',·['../pme__gpu__grid__sycl_8cpp.xhtml#a3bb4a447d7735630217c8d9b6a5e1963',·1,·'pme_gpu_grid_sycl.cpp']]],
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147 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a144cb9000ebc841c25d100cb1b45b6f7',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}::sc_testNamer'],148 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a144cb9000ebc841c25d100cb1b45b6f7',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}::sc_testNamer'],
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150 ····]],150 ····]],
151 ····['sc_5fworkgroupsize_105',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],151 ····['sc_5fworkgroupsize_105',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],
152 ····['sc_5fxoldwholename_5f_106',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],152 ····['sc_5fxoldwholename_5f_106',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],
153 ····['sc_5fxstride_107',·['sc_xStride',·['../namespacegmx.xhtml#a56bd008a3e40cc25b83bc1196e150ea9',·1,·'gmx']]],153 ····['sc_5fxstride_107',·['sc_xStride',·['../namespacegmx.xhtml#a56bd008a3e40cc25b83bc1196e150ea9',·1,·'gmx']]],
154 ····['scalar_2eh_108',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],154 ····['scalar_2eh_108',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
155 ····['scalar_5fmath_2eh_109',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],155 ····['scalar_5fmath_2eh_109',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
156 ····['scalar_5futil_2eh_110',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],156 ····['scalar_5futil_2eh_110',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],
157 ····['scalardatatypes_111',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],157 ····['scalardatatypes_111',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],
158 ····['scalarforce_112',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],158 ····['scalarforce_112',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],
159 ····['scale_113',·['scale',·['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale'], 
160 ········['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale'],159 ····['scale_113',·['scale',·['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale'],
 160 ········['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale'],
161 ········['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()']161 ········['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()']
162 ····]],162 ····]],
163 ····['scaleall_114',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],163 ····['scaleall_114',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],
164 ····['scaleallbyvector_115',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],164 ····['scaleallbyvector_115',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],
165 ····['scalebox_116',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],165 ····['scalebox_116',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],
166 ····['scalebyvector_117',·['scaleByVector',·['../namespacegmx.xhtml#a0f5022a3da3a90ab52ba2cec11c936d5',·1,·'gmx']]],166 ····['scalebyvector_117',·['scaleByVector',·['../namespacegmx.xhtml#a0f5022a3da3a90ab52ba2cec11c936d5',·1,·'gmx']]],
167 ····['scalecoordinates_118',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],167 ····['scalecoordinates_118',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],
168 ····['scaled_5flagrange_5fmultiplier_119',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],168 ····['scaled_5flagrange_5fmultiplier_119',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],
169 ····['scaledsampleweight_120',·['ScaledSampleWeight',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a7cffc85b2f1c2177a818913479ea4f18',·1,·'gmx']]],169 ····['scaledsampleweight_120',·['ScaledSampleWeight',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a7cffc85b2f1c2177a818913479ea4f18',·1,·'gmx']]],
170 ····['scaleinternaltouserinput_121',·['scaleInternalToUserInput',·['../structgmx_1_1DimParams.xhtml#a8b7199033caa1dbea6f4fbc8457c3103',·1,·'gmx::DimParams']]],170 ····['scaleinternaltouserinput_121',·['scaleInternalToUserInput',·['../structgmx_1_1DimParams.xhtml#a8b7199033caa1dbea6f4fbc8457c3103',·1,·'gmx::DimParams']]],
171 ····['scalekernel_122',·['scaleKernel',·['../namespacegmx.xhtml#a3478a6cdaf4905d5f1939a1cc0f7672c',·1,·'gmx']]],171 ····['scalekernel_122',·['scaleKernel',·['../namespacegmx.xhtml#a3478a6cdaf4905d5f1939a1cc0f7672c',·1,·'gmx']]],
172 ····['scaleoperationonly_123',·['scaleOperationOnly',·['../classgmx_1_1TranslateAndScale.xhtml#acc95c4510196adaa2be2e247eaa400a6',·1,·'gmx::TranslateAndScale']]],172 ····['scaleoperationonly_123',·['scaleOperationOnly',·['../classgmx_1_1TranslateAndScale.xhtml#acc95c4510196adaa2be2e247eaa400a6',·1,·'gmx::TranslateAndScale']]],
 173 ····['scalepositions_124',·['scalepositions',·['../namespacegmx.xhtml#aa40466eed05791a3c070a9620d0118a5',·1,·'gmx::scalePositions(int·a,·real·lambda,·rvec·*gmx_restrict·x)'],
173 ····['scalepositions_124',·['scalepositions',·['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a0ad0cca109a60ba3ddbe1df8f32d19ba',·1,·'gmx::ScalePositions'],174 ········['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a0ad0cca109a60ba3ddbe1df8f32d19ba',·1,·'gmx::ScalePositions']
174 ········['../namespacegmx.xhtml#aa40466eed05791a3c070a9620d0118a5',·1,·'gmx::scalePositions(int·a,·real·lambda,·rvec·*gmx_restrict·x)'] 
175 ····]],175 ····]],
176 ····['scalesingle_125',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],176 ····['scalesingle_125',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],
177 ····['scaletarget_126',·['scaleTarget',·['../classgmx_1_1PointState.xhtml#a93751c7f51be9d69545a30ce189bffc2',·1,·'gmx::PointState']]],177 ····['scaletarget_126',·['scaleTarget',·['../classgmx_1_1PointState.xhtml#a93751c7f51be9d69545a30ce189bffc2',·1,·'gmx::PointState']]],
178 ····['scaletargetbymetric_127',·['scaleTargetByMetric',·['../classgmx_1_1BiasParams.xhtml#ad9bd18c9c3bb06a0a31ae993dc420eba',·1,·'gmx::BiasParams']]],178 ····['scaletargetbymetric_127',·['scaleTargetByMetric',·['../classgmx_1_1BiasParams.xhtml#ad9bd18c9c3bb06a0a31ae993dc420eba',·1,·'gmx::BiasParams']]],
179 ····['scaleuserinputtointernal_128',·['scaleUserInputToInternal',·['../structgmx_1_1DimParams.xhtml#a004d2c59395c40d1600fcfecde06de49',·1,·'gmx::DimParams']]],179 ····['scaleuserinputtointernal_128',·['scaleUserInputToInternal',·['../structgmx_1_1DimParams.xhtml#a004d2c59395c40d1600fcfecde06de49',·1,·'gmx::DimParams']]],
 180 ····['scalevelocities_129',·['scalevelocities',·['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a2108282211446e168416bdfc55bbbda1',·1,·'gmx::ScaleVelocities'],
180 ····['scalevelocities_129',·['scalevelocities',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a92ef8227ecb881d5a8f7fd2b3882afe3',·1,·'gmx::UpdateConstrainGpu::Impl::scaleVelocities()'], 
181 ········['../namespacegmx.xhtml#a4e4da4f100aca65e4733c6fe8e881a45',·1,·'gmx::scaleVelocities(int·a,·real·lambda,·rvec·*gmx_restrict·v)'], 
182 ········['../group__module__modularsimulator.xhtml#ga5ff057aa36da97961cf549a2d15d0a1d',·1,·'gmx::ScaleVelocities'],181 ········['../group__module__modularsimulator.xhtml#ga5ff057aa36da97961cf549a2d15d0a1d',·1,·'gmx::ScaleVelocities'],
183 ········['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a2108282211446e168416bdfc55bbbda1',·1,·'gmx::ScaleVelocities']182 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a92ef8227ecb881d5a8f7fd2b3882afe3',·1,·'gmx::UpdateConstrainGpu::Impl::scaleVelocities()'],
 183 ········['../namespacegmx.xhtml#a4e4da4f100aca65e4733c6fe8e881a45',·1,·'gmx::scaleVelocities(int·a,·real·lambda,·rvec·*gmx_restrict·v)']
184 ····]],184 ····]],
185 ····['scalingmatrix_130',·['ScalingMatrix',·['../structgmx_1_1ScalingMatrix.xhtml',·1,·'gmx']]],185 ····['scalingmatrix_130',·['ScalingMatrix',·['../structgmx_1_1ScalingMatrix.xhtml',·1,·'gmx']]],
186 ····['scan_5fedvec_131',·['scan_edvec',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa33eff7a8d809b89f9cf9041736b276e',·1,·'anonymous_namespace{edsam.cpp}']]],186 ····['scan_5fedvec_131',·['scan_edvec',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa33eff7a8d809b89f9cf9041736b276e',·1,·'anonymous_namespace{edsam.cpp}']]],
187 ····['scanner_2eh_132',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],187 ····['scanner_2eh_132',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],
188 ····['scanner_5finternal_2ecpp_133',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],188 ····['scanner_5finternal_2ecpp_133',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],
189 ····['scanner_5finternal_2eh_134',·['scanner_internal.h',·['../scanner__internal_8h.xhtml',·1,·'']]],189 ····['scanner_5finternal_2eh_134',·['scanner_internal.h',·['../scanner__internal_8h.xhtml',·1,·'']]],
190 ····['scantemporary_135',·['scanTemporary',·['../classgmx_1_1GpuPairlistSorting.xhtml#af57aed49734b372a758187b23a0a347c',·1,·'gmx::GpuPairlistSorting']]],190 ····['scantemporary_135',·['scanTemporary',·['../classgmx_1_1GpuPairlistSorting.xhtml#af57aed49734b372a758187b23a0a347c',·1,·'gmx::GpuPairlistSorting']]],
Offset 202, 34 lines modifiedOffset 202, 34 lines modified
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Offset 66, 22 lines modifiedOffset 66, 22 lines modified
66 ····['t_5fumbrellawindow_49',·['t_UmbrellaWindow',·['../structt__UmbrellaWindow.xhtml',·1,·'']]],66 ····['t_5fumbrellawindow_49',·['t_UmbrellaWindow',·['../structt__UmbrellaWindow.xhtml',·1,·'']]],
67 ····['t_5fxpmelmt_50',·['t_xpmelmt',·['../structt__xpmelmt.xhtml',·1,·'']]],67 ····['t_5fxpmelmt_50',·['t_xpmelmt',·['../structt__xpmelmt.xhtml',·1,·'']]],
68 ····['ta_5fdisres_51',·['ta_disres',·['../disre_8h.xhtml#a0f24a3fea145dd8f74fc24a64232e8b9',·1,·'disre.h']]],68 ····['ta_5fdisres_51',·['ta_disres',·['../disre_8h.xhtml#a0f24a3fea145dd8f74fc24a64232e8b9',·1,·'disre.h']]],
69 ····['table_20interpolation_52',·['Classes·for·table·interpolation',·['../group__module__tables.xhtml',·1,·'']]],69 ····['table_20interpolation_52',·['Classes·for·table·interpolation',·['../group__module__tables.xhtml',·1,·'']]],
70 ····['tableinput_2eh_53',·['tableinput.h',·['../tableinput_8h.xhtml',·1,·'']]],70 ····['tableinput_2eh_53',·['tableinput.h',·['../tableinput_8h.xhtml',·1,·'']]],
71 ····['tableinteraction_54',·['TableInteraction',·['../forcetable_8h.xhtml#a5ab83e2e3173b76df0ca2b9ca595040c',·1,·'forcetable.h']]],71 ····['tableinteraction_54',·['TableInteraction',·['../forcetable_8h.xhtml#a5ab83e2e3173b76df0ca2b9ca595040c',·1,·'forcetable.h']]],
72 ····['tablesoffsets_55',·['tablesOffsets',·['../structPmeGpuGridParams.xhtml#a705c9e648f29b1dc77275482d31b5e2e',·1,·'PmeGpuGridParams']]],72 ····['tablesoffsets_55',·['tablesOffsets',·['../structPmeGpuGridParams.xhtml#a705c9e648f29b1dc77275482d31b5e2e',·1,·'PmeGpuGridParams']]],
 73 ····['tablespacing_56',·['tablespacing',·['../classgmx_1_1CubicSplineTable.xhtml#a68e69e9f9e7653a0f59b4417d9278055',·1,·'gmx::CubicSplineTable::tableSpacing()'],
73 ····['tablespacing_56',·['tablespacing',·['../classgmx_1_1QuadraticSplineTable.xhtml#a01c2df243de4371cf4c88ed712073ec4',·1,·'gmx::QuadraticSplineTable::tableSpacing()'],74 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a01c2df243de4371cf4c88ed712073ec4',·1,·'gmx::QuadraticSplineTable::tableSpacing()']
74 ········['../classgmx_1_1CubicSplineTable.xhtml#a68e69e9f9e7653a0f59b4417d9278055',·1,·'gmx::CubicSplineTable::tableSpacing()'] 
75 ····]],75 ····]],
76 ····['tabulated_5fbonded_5finteractions_2ecpp_57',·['tabulated_bonded_interactions.cpp',·['../tabulated__bonded__interactions_8cpp.xhtml',·1,·'']]],76 ····['tabulated_5fbonded_5finteractions_2ecpp_57',·['tabulated_bonded_interactions.cpp',·['../tabulated__bonded__interactions_8cpp.xhtml',·1,·'']]],
77 ····['tabulated_5fpot_58',·['tabulated_pot',·['../gmx__wham_8cpp.xhtml#a0274f4fbc68349f4127af1ea77473b89',·1,·'gmx_wham.cpp']]],77 ····['tabulated_5fpot_58',·['tabulated_pot',·['../gmx__wham_8cpp.xhtml#a0274f4fbc68349f4127af1ea77473b89',·1,·'gmx_wham.cpp']]],
 78 ····['tabulatednormaldistribution_59',·['tabulatednormaldistribution',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution()'],
78 ····['tabulatednormaldistribution_59',·['tabulatednormaldistribution',·['../classgmx_1_1TabulatedNormalDistribution.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;'],79 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;'],
79 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],80 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution()']
80 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(const·param_type·&amp;param)'] 
81 ····]],81 ····]],
82 ····['tabulatednormaldistribution_2ecpp_60',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],82 ····['tabulatednormaldistribution_2ecpp_60',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],
83 ····['tabulatednormaldistribution_2eh_61',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],83 ····['tabulatednormaldistribution_2eh_61',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],
84 ····['tabulatestructurefactors_62',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],84 ····['tabulatestructurefactors_62',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],
85 ····['tag_63',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],85 ····['tag_63',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],
86 ····['tan_64',·['tan',·['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)'],86 ····['tan_64',·['tan',·['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)'],
87 ········['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)']87 ········['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)']
Offset 111, 16 lines modifiedOffset 111, 16 lines modified
111 ····['tausmooth_80',·['tausmooth',·['../structt__UmbrellaWindow.xhtml#adca5c639bf77415ff74cdd36259747ac',·1,·'t_UmbrellaWindow']]],111 ····['tausmooth_80',·['tausmooth',·['../structt__UmbrellaWindow.xhtml#adca5c639bf77415ff74cdd36259747ac',·1,·'t_UmbrellaWindow']]],
112 ····['taut_81',·['tauT',·['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#ad2429598fcf2120680f2c9cbb242a227',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters']]],112 ····['taut_81',·['tauT',·['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#ad2429598fcf2120680f2c9cbb242a227',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters']]],
113 ····['tbin_82',·['tbin',·['../structmethoddata__insolidangle.xhtml#a8e051ab9e3b8939ceaf35aea4b20c980',·1,·'methoddata_insolidangle']]],113 ····['tbin_82',·['tbin',·['../structmethoddata__insolidangle.xhtml#a8e051ab9e3b8939ceaf35aea4b20c980',·1,·'methoddata_insolidangle']]],
114 ····['tbinsize_83',·['tbinsize',·['../structmethoddata__insolidangle.xhtml#a37c045688253e214ec4f38582c565d5a',·1,·'methoddata_insolidangle']]],114 ····['tbinsize_83',·['tbinsize',·['../structmethoddata__insolidangle.xhtml#a37c045688253e214ec4f38582c565d5a',·1,·'methoddata_insolidangle']]],
115 ····['teardown_84',·['teardown',·['../classgmx_1_1PmeLoadBalanceHelper.xhtml#a3130fd41d2ff2414f0fc6089b586d5bb',·1,·'gmx::PmeLoadBalanceHelper::teardown()'],115 ····['teardown_84',·['teardown',·['../classgmx_1_1PmeLoadBalanceHelper.xhtml#a3130fd41d2ff2414f0fc6089b586d5bb',·1,·'gmx::PmeLoadBalanceHelper::teardown()'],
116 ········['../classgmx_1_1EnergyData.xhtml#ab37d08455a3f6c93bf73d3b6983f99af',·1,·'gmx::EnergyData::teardown()']116 ········['../classgmx_1_1EnergyData.xhtml#ab37d08455a3f6c93bf73d3b6983f99af',·1,·'gmx::EnergyData::teardown()']
117 ····]],117 ····]],
118 ····['teardowntestsuite_85',·['teardowntestsuite',·['../classgmx_1_1test_1_1MdrunTestFixtureBase.xhtml#aeb3adf1e5777af74e64006f41c7ed0fd',·1,·'gmx::test::MdrunTestFixtureBase::TearDownTestSuite()'], 
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222 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02checkpointdata_8cpp_03.xhtml#aad44cd3d138240462d4534ee9633bfa1',·1,·'gmx::test::anonymous_namespace{checkpointdata.cpp}::testOutput(const·std::string·&amp;key,·const·std::vector&lt;·T·&gt;·&amp;inputVector,·ReadCheckpointData·*checkpointData)'],222 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02checkpointdata_8cpp_03.xhtml#aad44cd3d138240462d4534ee9633bfa1',·1,·'gmx::test::anonymous_namespace{checkpointdata.cpp}::testOutput(const·std::string·&amp;key,·const·std::vector&lt;·T·&gt;·&amp;inputVector,·ReadCheckpointData·*checkpointData)'],
223 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02checkpointdata_8cpp_03.xhtml#a256911cd50800e2c87bacc8cba91a65d',·1,·'gmx::test::anonymous_namespace{checkpointdata.cpp}::testOutput(const·std::string·&amp;key,·const·tensor·inputTensor,·ReadCheckpointData·*checkpointData)']223 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02checkpointdata_8cpp_03.xhtml#a2e5f4a7e8bb22f68c3b391de25d9b253',·1,·'gmx::test::anonymous_namespace{checkpointdata.cpp}::testOutput(const·std::string·&amp;key,·const·T·&amp;inputValue,·ReadCheckpointData·*checkpointData)']
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34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
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36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],
37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']37 ········['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']
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39 ····['unit_23',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'],39 ····['unit_23',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'],
40 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']40 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']
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483 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']483 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
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486 ····['analysisdataaveragemodule_294',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],486 ····['analysisdataaveragemodule_294',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],
487 ····['analysisdataaveragemodulepointer_295',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],487 ····['analysisdataaveragemodulepointer_295',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],
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912 ····['asconstview_530',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],912 ····['asconstview_530',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],
913 ····['asfloat3_531',·['asfloat3',·['../typecasts__cuda__hip_8h.xhtml#a907e7d1b77f6ed53ba9aee03de2e104e',·1,·'asFloat3(gmx::RVec·*in):&#160;typecasts_cuda_hip.h'],913 ····['asfloat3_531',·['asfloat3',·['../typecasts__cuda__hip_8h.xhtml#a907e7d1b77f6ed53ba9aee03de2e104e',·1,·'asFloat3(gmx::RVec·*in):&#160;typecasts_cuda_hip.h'],
914 ········['../typecasts__cuda__hip_8h.xhtml#a5b3b274c6d609569eeb80fdcbe90793b',·1,·'asFloat3(const·gmx::RVec·*in):&#160;typecasts_cuda_hip.h']914 ········['../typecasts__cuda__hip_8h.xhtml#a5b3b274c6d609569eeb80fdcbe90793b',·1,·'asFloat3(const·gmx::RVec·*in):&#160;typecasts_cuda_hip.h']
915 ····]],915 ····]],
 916 ····['asfloat3pointer_532',·['asfloat3pointer',·['../typecasts__cuda__hip_8h.xhtml#a11a331229d7c98f7483574dec7798425',·1,·'asFloat3Pointer(gmx::RVec·**in):&#160;typecasts_cuda_hip.h'],
916 ····['asfloat3pointer_532',·['asfloat3pointer',·['../typecasts__cuda__hip_8h.xhtml#ab65b218556c9108ce68d7332f0a801f8',·1,·'asFloat3Pointer(const·gmx::RVec·*const·*in):&#160;typecasts_cuda_hip.h'],917 ········['../typecasts__cuda__hip_8h.xhtml#ab65b218556c9108ce68d7332f0a801f8',·1,·'asFloat3Pointer(const·gmx::RVec·*const·*in):&#160;typecasts_cuda_hip.h']
917 ········['../typecasts__cuda__hip_8h.xhtml#a11a331229d7c98f7483574dec7798425',·1,·'asFloat3Pointer(gmx::RVec·**in):&#160;typecasts_cuda_hip.h'] 
918 ····]],918 ····]],
919 ····['asgenericfloat3pointer_533',·['asgenericfloat3pointer',·['../namespacegmx.xhtml#a7cf8c0c79ed50d630c676a108cff651e',·1,·'gmx::asGenericFloat3Pointer(T·*in)'],919 ····['asgenericfloat3pointer_533',·['asgenericfloat3pointer',·['../namespacegmx.xhtml#a61d1fa4d0073e932d5ea53fd4ec968e9',·1,·'gmx::asGenericFloat3Pointer(C·&amp;in)'],
 920 ········['../namespacegmx.xhtml#a7cf8c0c79ed50d630c676a108cff651e',·1,·'gmx::asGenericFloat3Pointer(T·*in)'],
920 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],921 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],
921 ········['../namespacegmx.xhtml#a61d1fa4d0073e932d5ea53fd4ec968e9',·1,·'gmx::asGenericFloat3Pointer(C·&amp;in)'], 
922 ········['../namespacegmx.xhtml#a1b0b8846fcb8364fafd83a5592f12108',·1,·'gmx::asGenericFloat3Pointer(const·C·&amp;in)']922 ········['../namespacegmx.xhtml#a1b0b8846fcb8364fafd83a5592f12108',·1,·'gmx::asGenericFloat3Pointer(const·C·&amp;in)']
923 ····]],923 ····]],
924 ····['asin_534',·['asin',·['../namespacegmx.xhtml#a3d5120df9c0bf437e64c806a7cfdad02',·1,·'gmx::asin(float·x)'],924 ····['asin_534',·['asin',·['../namespacegmx.xhtml#a3d5120df9c0bf437e64c806a7cfdad02',·1,·'gmx::asin(float·x)'],
925 ········['../namespacegmx.xhtml#ab02c7d47595f11074fbfedff40145544',·1,·'gmx::asin(double·x)']925 ········['../namespacegmx.xhtml#ab02c7d47595f11074fbfedff40145544',·1,·'gmx::asin(double·x)']
926 ····]],926 ····]],
927 ····['asinsingleaccuracy_535',·['asinSingleAccuracy',·['../namespacegmx.xhtml#a98465e562d7b1b24755bc693db04c8f5',·1,·'gmx']]],927 ····['asinsingleaccuracy_535',·['asinSingleAccuracy',·['../namespacegmx.xhtml#a98465e562d7b1b24755bc693db04c8f5',·1,·'gmx']]],
928 ····['asize_536',·['asize',·['../group__module__utility.xhtml#ga2f549c8a29e4b43b862a96314a66a5fa',·1,·'arraysize.h']]],928 ····['asize_536',·['asize',·['../group__module__utility.xhtml#ga2f549c8a29e4b43b862a96314a66a5fa',·1,·'arraysize.h']]],
Offset 951, 159 lines modifiedOffset 951, 159 lines modified
951 ····['assignpositionrestraintsforatom_557',·['assignPositionRestraintsForAtom',·['../localtopology_8cpp.xhtml#afb4fa529774cf67304776e604b9879fd',·1,·'localtopology.cpp']]],951 ····['assignpositionrestraintsforatom_557',·['assignPositionRestraintsForAtom',·['../localtopology_8cpp.xhtml#afb4fa529774cf67304776e604b9879fd',·1,·'localtopology.cpp']]],
952 ····['assignvsitestosingletask_558',·['assignVsitesToSingleTask',·['../namespacegmx.xhtml#a1eee8bc37f540f65a107fa21a102c09d',·1,·'gmx']]],952 ····['assignvsitestosingletask_558',·['assignVsitesToSingleTask',·['../namespacegmx.xhtml#a1eee8bc37f540f65a107fa21a102c09d',·1,·'gmx']]],
953 ····['assignvsitestothread_559',·['assignVsitesToThread',·['../namespacegmx.xhtml#a8ff9857961193a9bd5fbd1fb027ba44f',·1,·'gmx']]],953 ····['assignvsitestothread_559',·['assignVsitesToThread',·['../namespacegmx.xhtml#a8ff9857961193a9bd5fbd1fb027ba44f',·1,·'gmx']]],
954 ····['associativity_560',·['associativity',·['../structgmx_1_1HardwareTopology_1_1Cache.xhtml#ad5a56cc20c9ca27eb6276374e411a430',·1,·'gmx::HardwareTopology::Cache']]],954 ····['associativity_560',·['associativity',·['../structgmx_1_1HardwareTopology_1_1Cache.xhtml#ad5a56cc20c9ca27eb6276374e411a430',·1,·'gmx::HardwareTopology::Cache']]],
955 ····['asulps_561',·['asUlps',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a64f20cf7b256513aa8bdda6c142f7dae',·1,·'gmx::test::FloatingPointDifference']]],955 ····['asulps_561',·['asUlps',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a64f20cf7b256513aa8bdda6c142f7dae',·1,·'gmx::test::FloatingPointDifference']]],
956 ····['asview_562',·['asView',·['../classgmx_1_1MultiDimArray.xhtml#a23a1fb8f2c0045928c48ccb88ef85632',·1,·'gmx::MultiDimArray']]],956 ····['asview_562',·['asView',·['../classgmx_1_1MultiDimArray.xhtml#a23a1fb8f2c0045928c48ccb88ef85632',·1,·'gmx::MultiDimArray']]],
957 ····['async_563',·['Async',·['../gpu__utils_8h.xhtml#aed6d99acc2a7b8495f08fa2d9d2277eba24aa4117da86c41684ad25742832dfa6',·1,·'gpu_utils.h']]],957 ····['async_563',·['Async',·['../gpu__utils_8h.xhtml#aed6d99acc2a7b8495f08fa2d9d2277eba24aa4117da86c41684ad25742832dfa6',·1,·'gpu_utils.h']]],
 958 ····['at_564',·['at',·['../classgmx_1_1ListOfLists.xhtml#a49d32c6ff1a5eca209be358475e05713',·1,·'gmx::ListOfLists::at()'],
958 ····['at_564',·['at',·['../classgmx_1_1EnergyFrame.xhtml#a73ace4971cafa88adaceea02aea4646e',·1,·'gmx::EnergyFrame::at()'], 
959 ········['../classgmx__ga2la__t.xhtml#ad8f304cbe18bbec9715f837fd1e2aa93',·1,·'gmx_ga2la_t::at()'], 
960 ········['../classgmx_1_1FixedCapacityVector.xhtml#a7a5d2f452d79950647ced1d370628f76',·1,·'gmx::FixedCapacityVector::at(size_type·n)·const'], 
961 ········['../classgmx_1_1FixedCapacityVector.xhtml#a438cb41d4f31da753c8d7d36256c0c41',·1,·'gmx::FixedCapacityVector::at(size_type·n)'], 
962 ········['../classStringTable.xhtml#adcc938ba043e0c531773e64d87d00827',·1,·'StringTable::at()'], 
963 ········['../classgmx_1_1ArrayRef.xhtml#adc8ea4073c94eb246b0027c4bd7d01da',·1,·'gmx::ArrayRef::at()'],959 ········['../classgmx_1_1ArrayRef.xhtml#adc8ea4073c94eb246b0027c4bd7d01da',·1,·'gmx::ArrayRef::at()'],
964 ········['../classgmx_1_1ListOfLists.xhtml#a49d32c6ff1a5eca209be358475e05713',·1,·'gmx::ListOfLists::at()']960 ········['../classStringTable.xhtml#adcc938ba043e0c531773e64d87d00827',·1,·'StringTable::at()'],
 961 ········['../classgmx_1_1FixedCapacityVector.xhtml#a438cb41d4f31da753c8d7d36256c0c41',·1,·'gmx::FixedCapacityVector::at(size_type·n)'],
 962 ········['../classgmx_1_1FixedCapacityVector.xhtml#a7a5d2f452d79950647ced1d370628f76',·1,·'gmx::FixedCapacityVector::at(size_type·n)·const'],
 963 ········['../classgmx_1_1EnergyFrame.xhtml#a73ace4971cafa88adaceea02aea4646e',·1,·'gmx::EnergyFrame::at()'],
 964 ········['../classgmx__ga2la__t.xhtml#ad8f304cbe18bbec9715f837fd1e2aa93',·1,·'gmx_ga2la_t::at()']
965 ····]],965 ····]],
966 ····['at_5fend_565',·['at_end',·['../structgmx__domdec__specat__comm__t.xhtml#acfc1ad88275feb891d5eaf41e6fe31b6',·1,·'gmx_domdec_specat_comm_t']]],966 ····['at_5fend_565',·['at_end',·['../structgmx__domdec__specat__comm__t.xhtml#acfc1ad88275feb891d5eaf41e6fe31b6',·1,·'gmx_domdec_specat_comm_t']]],
967 ····['at_5fstart_566',·['at_start',·['../structgmx__domdec__specat__comm__t.xhtml#a55cac48fb79ab129c6e54ecd71b10d66',·1,·'gmx_domdec_specat_comm_t']]],967 ····['at_5fstart_566',·['at_start',·['../structgmx__domdec__specat__comm__t.xhtml#a55cac48fb79ab129c6e54ecd71b10d66',·1,·'gmx_domdec_specat_comm_t']]],
968 ····['atan_567',·['atan',·['../namespacegmx.xhtml#a1afbc2ada56f899a8d3dc5c61530e28b',·1,·'gmx::atan(float·x)'],968 ····['atan_567',·['atan',·['../namespacegmx.xhtml#a1afbc2ada56f899a8d3dc5c61530e28b',·1,·'gmx::atan(float·x)'],
969 ········['../namespacegmx.xhtml#af15e6f3962e035d69013bd91621fd9f8',·1,·'gmx::atan(double·x)']969 ········['../namespacegmx.xhtml#af15e6f3962e035d69013bd91621fd9f8',·1,·'gmx::atan(double·x)']
970 ····]],970 ····]],
 971 ····['atan2_568',·['atan2',·['../namespacegmx.xhtml#aed8336a58abddcdb6afa7835138ecf46',·1,·'gmx::atan2(float·y,·float·x)'],
971 ····['atan2_568',·['atan2',·['../namespacegmx.xhtml#aa70a1aa5e9c161a2770d0f9b7eca1805',·1,·'gmx::atan2(double·y,·double·x)'],972 ········['../namespacegmx.xhtml#aa70a1aa5e9c161a2770d0f9b7eca1805',·1,·'gmx::atan2(double·y,·double·x)']
972 ········['../namespacegmx.xhtml#aed8336a58abddcdb6afa7835138ecf46',·1,·'gmx::atan2(float·y,·float·x)'] 
973 ····]],973 ····]],
974 ····['atan2singleaccuracy_569',·['atan2SingleAccuracy',·['../namespacegmx.xhtml#a2552094c1be29e087e1e85ae02fb0c7a',·1,·'gmx']]],974 ····['atan2singleaccuracy_569',·['atan2SingleAccuracy',·['../namespacegmx.xhtml#a2552094c1be29e087e1e85ae02fb0c7a',·1,·'gmx']]],
975 ····['atansingleaccuracy_570',·['atanSingleAccuracy',·['../namespacegmx.xhtml#a44ca54cb014d2f33b98f3d523d90a2f5',·1,·'gmx']]],975 ····['atansingleaccuracy_570',·['atanSingleAccuracy',·['../namespacegmx.xhtml#a44ca54cb014d2f33b98f3d523d90a2f5',·1,·'gmx']]],
976 ····['atdat_571',·['atdat',·['../structgmx_1_1NbnxmGpu.xhtml#ac977a0cf05953a53ff1df8cd01d06853',·1,·'gmx::NbnxmGpu::atdat'],976 ····['atdat_571',·['atdat',·['../structgmx_1_1NbnxmGpu.xhtml#ac977a0cf05953a53ff1df8cd01d06853',·1,·'gmx::NbnxmGpu::atdat'],
977 ········['../structgmx_1_1GpuTimers.xhtml#ae992b44d7d09dcf79d1347f9219d3402',·1,·'gmx::GpuTimers::atdat']977 ········['../structgmx_1_1GpuTimers.xhtml#ae992b44d7d09dcf79d1347f9219d3402',·1,·'gmx::GpuTimers::atdat']
978 ····]],978 ····]],
979 ····['atf_572',·['atf',·['../classgmx_1_1Lincs.xhtml#a0c17addba5fc06083dd777639123fbee',·1,·'gmx::Lincs']]],979 ····['atf_572',·['atf',·['../classgmx_1_1Lincs.xhtml#a0c17addba5fc06083dd777639123fbee',·1,·'gmx::Lincs']]],
980 ····['atnr_573',·['atnr',·['../structgmx__ffparams__t.xhtml#a0bbf906344980fc3d5af5872db5b8ff4',·1,·'gmx_ffparams_t::atnr'],980 ····['atnr_573',·['atnr',·['../structgmx__ffparams__t.xhtml#a0bbf906344980fc3d5af5872db5b8ff4',·1,·'gmx_ffparams_t::atnr'],
981 ········['../structt__idef.xhtml#ac0de032c9fe33bc65755c359d7724d71',·1,·'t_idef::atnr']981 ········['../structt__idef.xhtml#ac0de032c9fe33bc65755c359d7724d71',·1,·'t_idef::atnr']
982 ····]],982 ····]],
 983 ····['atom_574',·['atom',·['../classAtomProxy.xhtml#a74dd8b9d35b876b3cf4a3b4a8e772cfc',·1,·'AtomProxy::atom()'],
983 ····['atom_574',·['atom',·['../structt__nblist_1_1JEntry.xhtml#a41ea68a69e0699cbc7a9809dbcf739ec',·1,·'t_nblist::JEntry::atom'],984 ········['../structt__nblist_1_1JEntry.xhtml#a41ea68a69e0699cbc7a9809dbcf739ec',·1,·'t_nblist::JEntry::atom'],
 985 ········['../structPreprocessResidue.xhtml#acb4af191ced642266b5124549f2bb90e',·1,·'PreprocessResidue::atom'],
984 ········['../classAtomProxy.xhtml#a74dd8b9d35b876b3cf4a3b4a8e772cfc',·1,·'AtomProxy::atom()'], 
985 ········['../structt__nblist_1_1IEntry.xhtml#a159a337c3a0dff382aa71c1d327272bf',·1,·'t_nblist::IEntry::atom'], 
986 ········['../structgmx_1_1AtomIndex.xhtml#a86c46467c265c752b180d28dac63910e',·1,·'gmx::AtomIndex::atom'], 
987 ········['../structMoleculePatch.xhtml#a1d1bc0e0e73fa1aed4ca493c981fb464',·1,·'MoleculePatch::atom'],986 ········['../structMoleculePatch.xhtml#a1d1bc0e0e73fa1aed4ca493c981fb464',·1,·'MoleculePatch::atom'],
988 ········['../structPreprocessResidue.xhtml#acb4af191ced642266b5124549f2bb90e',·1,·'PreprocessResidue::atom']987 ········['../structgmx_1_1AtomIndex.xhtml#a86c46467c265c752b180d28dac63910e',·1,·'gmx::AtomIndex::atom'],
 988 ········['../structt__nblist_1_1IEntry.xhtml#a159a337c3a0dff382aa71c1d327272bf',·1,·'t_nblist::IEntry::atom']
989 ····]],989 ····]],
990 ····['atom_20cluster_20non_20bonded_20algorithm_575',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],990 ····['atom_20cluster_20non_20bonded_20algorithm_575',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
 991 ····['atom1_576',·['atom1',·['../structVirtualSiteTopology_1_1VirtualSiteBond.xhtml#aa1b18c7a3742b0f0a0dc5c16c0fd4f63',·1,·'VirtualSiteTopology::VirtualSiteBond::atom1'],
991 ····['atom1_576',·['atom1',·['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#af57ae380179f35813f7df5fbfc9974e6',·1,·'VirtualSiteTopology::VirtualSiteAngle::atom1'],992 ········['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#af57ae380179f35813f7df5fbfc9974e6',·1,·'VirtualSiteTopology::VirtualSiteAngle::atom1']
992 ········['../structVirtualSiteTopology_1_1VirtualSiteBond.xhtml#aa1b18c7a3742b0f0a0dc5c16c0fd4f63',·1,·'VirtualSiteTopology::VirtualSiteBond::atom1'] 
993 ····]],993 ····]],
994 ····['atom2_577',·['atom2',·['../structVirtualSiteTopology_1_1VirtualSiteBond.xhtml#ab9f07b4bfbc4fdfab7cb68c97b07d65f',·1,·'VirtualSiteTopology::VirtualSiteBond::atom2'],994 ····['atom2_577',·['atom2',·['../structVirtualSiteTopology_1_1VirtualSiteBond.xhtml#ab9f07b4bfbc4fdfab7cb68c97b07d65f',·1,·'VirtualSiteTopology::VirtualSiteBond::atom2'],
995 ········['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#a4e6b102e3e81587c06285605cadb6cf2',·1,·'VirtualSiteTopology::VirtualSiteAngle::atom2']995 ········['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#a4e6b102e3e81587c06285605cadb6cf2',·1,·'VirtualSiteTopology::VirtualSiteAngle::atom2']
996 ····]],996 ····]],
997 ····['atom2constraints_5fmoltype_578',·['atom2constraints_moltype',·['../classgmx_1_1Constraints.xhtml#ae549351ff9c0499f19c9973ce201a447',·1,·'gmx::Constraints']]],997 ····['atom2constraints_5fmoltype_578',·['atom2constraints_moltype',·['../classgmx_1_1Constraints.xhtml#ae549351ff9c0499f19c9973ce201a447',·1,·'gmx::Constraints']]],
998 ····['atom2settle_5fmoltype_579',·['atom2settle_moltype',·['../classgmx_1_1Constraints.xhtml#a7661c09da92e38f1b6bb66aa92b5f13b',·1,·'gmx::Constraints']]],998 ····['atom2settle_5fmoltype_579',·['atom2settle_moltype',·['../classgmx_1_1Constraints.xhtml#a7661c09da92e38f1b6bb66aa92b5f13b',·1,·'gmx::Constraints']]],
999 ····['atom2vsitebond_580',·['Atom2VsiteBond',·['../structAtom2VsiteBond.xhtml',·1,·'']]],999 ····['atom2vsitebond_580',·['Atom2VsiteBond',·['../structAtom2VsiteBond.xhtml',·1,·'']]],
1000 ····['atom3_581',·['atom3',·['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#a13def359d1298b31a803c856da142ec7',·1,·'VirtualSiteTopology::VirtualSiteAngle']]],1000 ····['atom3_581',·['atom3',·['../structVirtualSiteTopology_1_1VirtualSiteAngle.xhtml#a13def359d1298b31a803c856da142ec7',·1,·'VirtualSiteTopology::VirtualSiteAngle']]],
1001 ····['atom_5fto_5fx_5findex_582',·['atom_to_x_index',·['../namespacegmx.xhtml#ad564a95065204fd06ea7ef304a1a8065',·1,·'gmx']]],1001 ····['atom_5fto_5fx_5findex_582',·['atom_to_x_index',·['../namespacegmx.xhtml#ad564a95065204fd06ea7ef304a1a8065',·1,·'gmx']]],
1002 ····['atomareas_5f_583',·['atomAreas_',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#aaa6a3ef895fa4220cf874abbd824ad79',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData']]],1002 ····['atomareas_5f_583',·['atomAreas_',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#aaa6a3ef895fa4220cf874abbd824ad79',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData']]],
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62 ········['../structBaseEntry.xhtml#a2401e50e491660cddeb73b3a72a94e69',·1,·'BaseEntry::BaseEntry()']62 ········['../structBaseEntry.xhtml#a2401e50e491660cddeb73b3a72a94e69',·1,·'BaseEntry::BaseEntry()']
63 ····]],63 ····]],
64 ····['baseid_26',·['baseid',·['../structgmx__ana__poscalc__t.xhtml#ae07c26738181ffe6a413e57ed6e5bd64',·1,·'gmx_ana_poscalc_t']]],64 ····['baseid_26',·['baseid',·['../structgmx__ana__poscalc__t.xhtml#ae07c26738181ffe6a413e57ed6e5bd64',·1,·'gmx_ana_poscalc_t']]],
65 ····['baselatency_27',·['baseLatency',·['../structgmx_1_1HardwareTopology_1_1Numa.xhtml#ae5953a3434aa195be6ec0af0c98461d0',·1,·'gmx::HardwareTopology::Numa']]],65 ····['baselatency_27',·['baseLatency',·['../structgmx_1_1HardwareTopology_1_1Numa.xhtml#ae5953a3434aa195be6ec0af0c98461d0',·1,·'gmx::HardwareTopology::Numa']]],
66 ····['basenetwork_2eh_28',·['basenetwork.h',·['../basenetwork_8h.xhtml',·1,·'']]],66 ····['basenetwork_2eh_28',·['basenetwork.h',·['../basenetwork_8h.xhtml',·1,·'']]],
67 ····['baseversion_2eh_29',·['baseversion.h',·['../baseversion_8h.xhtml',·1,·'']]],67 ····['baseversion_2eh_29',·['baseversion.h',·['../baseversion_8h.xhtml',·1,·'']]],
68 ····['baseversion_5fgen_2eh_30',·['baseversion_gen.h',·['../baseversion__gen_8h.xhtml',·1,·'']]],68 ····['baseversion_5fgen_2eh_30',·['baseversion_gen.h',·['../baseversion__gen_8h.xhtml',·1,·'']]],
 69 ····['basic_31',·['basic',·['../classgmx_1_1HardwareTopology.xhtml#aa94ffc2c936d76ba16f1938f449cfaa8a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::HardwareTopology::Basic'],
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70 ········['../classgmx_1_1HardwareTopology.xhtml#aa94ffc2c936d76ba16f1938f449cfaa8a972e73b7a882d0802a4e3a16946a2f94',·1,·'gmx::HardwareTopology::Basic'] 
71 ····]],71 ····]],
72 ····['basic_5fmdspan_32',·['basic_mdspan',·['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan&lt;·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·&gt;·&amp;rhs)·noexcept'], 
73 ········['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&amp;other)'],72 ····['basic_5fmdspan_32',·['basic_mdspan',·['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&amp;other)'],
74 ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&amp;&amp;other)'], 
75 ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m,·const·accessor_type·&amp;a)·noexcept'], 
76 ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m)·noexcept'],73 ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m)·noexcept'],
77 ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan&lt;·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·&gt;'], 
78 ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array&lt;·ptrdiff_t,·extents_type::rank_dynamic()&gt;·&amp;dynamic_extents)'],74 ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array&lt;·ptrdiff_t,·extents_type::rank_dynamic()&gt;·&amp;dynamic_extents)'],
79 ········['../classgmx_1_1basic__mdspan.xhtml#af91e1c5db6aa3eb085defcaf777c6fd3',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·IndexType...·DynamicExtents)·noexcept'],75 ········['../classgmx_1_1basic__mdspan.xhtml#af91e1c5db6aa3eb085defcaf777c6fd3',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·IndexType...·DynamicExtents)·noexcept'],
80 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept'],76 ········['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan&lt;·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·&gt;·&amp;rhs)·noexcept'],
 77 ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&amp;m,·const·accessor_type·&amp;a)·noexcept'],
 78 ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&amp;&amp;other)'],
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81 ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&amp;&amp;other)·noexcept=default'],81 ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&amp;&amp;other)·noexcept=default'],
82 ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&amp;other)·noexcept=default']82 ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()·noexcept']
83 ····]],83 ····]],
84 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],84 ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_33',·['basic_mdspan&lt;·value_type,·dynamic_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
85 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],85 ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_34',·['basic_mdspan&lt;·value_type,·Extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
86 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_35',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],86 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_35',·['basic_mdspan&lt;·value_type,·gmx::extents,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
87 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_204_2c_203_20_3e_2c_20layout_5fright_20_3e_36',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·4,·3·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],87 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_204_2c_203_20_3e_2c_20layout_5fright_20_3e_36',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·4,·3·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
88 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_37',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·dynamic_extent,·dynamic_extent·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],88 ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_37',·['basic_mdspan&lt;·value_type,·gmx::extents&lt;·dynamic_extent,·dynamic_extent·&gt;,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
89 ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_38',·['basic_mdspan&lt;·value_type,·static_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],89 ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_38',·['basic_mdspan&lt;·value_type,·static_extents_type,·layout_right·&gt;',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]],
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129 ····['bdataproperty_5f_68',·['bDataProperty_',·['../classgmx_1_1AnalysisDataModuleManager_1_1Impl.xhtml#a12b9fab82a72fdb6d521944c6fab4eab',·1,·'gmx::AnalysisDataModuleManager::Impl']]],129 ····['bdataproperty_5f_68',·['bDataProperty_',·['../classgmx_1_1AnalysisDataModuleManager_1_1Impl.xhtml#a12b9fab82a72fdb6d521944c6fab4eab',·1,·'gmx::AnalysisDataModuleManager::Impl']]],
130 ····['bdebugmode_69',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],130 ····['bdebugmode_69',·['bDebugMode',·['../fatalerror_8h.xhtml#aeceaa87707ac5c2c96e224de90dd481c',·1,·'fatalerror.cpp']]],
131 ····['bdiscrete_70',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],131 ····['bdiscrete_70',·['bDiscrete',·['../structt__matrix.xhtml#a6ca5a8d5f5d4be235502f83ffac2586c',·1,·'t_matrix']]],
132 ····['bdotime_71',·['bDoTime',·['../structgmx_1_1NbnxmGpu.xhtml#a3d617d678246cce64ceda64d6358cc0c',·1,·'gmx::NbnxmGpu']]],132 ····['bdotime_71',·['bDoTime',·['../structgmx_1_1NbnxmGpu.xhtml#a3d617d678246cce64ceda64d6358cc0c',·1,·'gmx::NbnxmGpu']]],
133 ····['bdynamicbox_72',·['bDynamicBox',·['../structgmx_1_1nbnxn__atomdata__t.xhtml#afaf048710cbf2887f36a734d8707078f',·1,·'gmx::nbnxn_atomdata_t']]],133 ····['bdynamicbox_72',·['bDynamicBox',·['../structgmx_1_1nbnxn__atomdata__t.xhtml#afaf048710cbf2887f36a734d8707078f',·1,·'gmx::nbnxn_atomdata_t']]],
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136 ········['../classgmx_1_1EnergyTerm.xhtml#a4b930e14cacc91c16a0c6e59fb48ea58',·1,·'gmx::EnergyTerm::begin()'], 
137 ········['../classgmx_1_1IntegerBox.xhtml#a4bdda1928d7845c8e5c5c3ef2918a466',·1,·'gmx::IntegerBox::begin()'], 
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139 ········['../classAtomRange.xhtml#afc17642be8cc592f6f47fdd9d86aa408',·1,·'AtomRange::begin()'], 
140 ········['../classIListRange.xhtml#a7526befe10a07f17dbc35e704d01aeea',·1,·'IListRange::begin()'], 
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142 ········['../classgmx_1_1FixedCapacityVector.xhtml#a93f0ea6236ab2cc8e924025646f8d87b',·1,·'gmx::FixedCapacityVector::begin()·const·noexcept'], 
143 ········['../classgmx_1_1FixedCapacityVector.xhtml#a453e4185086abe32f76359d79e5df439',·1,·'gmx::FixedCapacityVector::begin()·noexcept'], 
144 ········['../classgmx_1_1EnumerationWrapper.xhtml#abf496f9dcaab55be1b9cbe93f05312d9',·1,·'gmx::EnumerationWrapper::begin()'], 
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148 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],141 ········['../namespacegmx.xhtml#a636719700df07fe8736fa19bb12c29dd',·1,·'gmx::begin(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
149 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)']142 ········['../namespacegmx.xhtml#a9fd99e24e163158545296b3f791b0ee8',·1,·'gmx::begin(const·BasicMdspan·&amp;basicMdspan)'],
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152 ····['beginiterator_76',·['beginIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#a6301d2be458f368de68f404d9dff17f7',·1,·'gmx::SelectionParserSymbolTable']]],152 ····['beginiterator_76',·['beginIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#a6301d2be458f368de68f404d9dff17f7',·1,·'gmx::SelectionParserSymbolTable']]],
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164 ····['bend_86',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],164 ····['bend_86',·['Bend',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a8ec2371446161e824ba0e6fb1edbba0cadcef3e264a0eecc2a9eadd4478c67a1f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
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166 ····['berendsentemperaturecoupling_88',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],166 ····['berendsentemperaturecoupling_88',·['BerendsenTemperatureCoupling',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml',·1,·'gmx']]],
167 ····['bestvertex_89',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],167 ····['bestvertex_89',·['bestVertex',·['../classgmx_1_1NelderMeadSimplex.xhtml#a766a1b22213cf4e5a7a10ee4130afd6f',·1,·'gmx::NelderMeadSimplex']]],
168 ····['beta_90',·['beta',·['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta'],168 ····['beta_90',·['beta',·['../structgmx_1_1test_1_1AwhTestParameters.xhtml#a3f4c1a9b2610aa00392d66d2c4b183ea',·1,·'gmx::test::AwhTestParameters::beta'],
169 ········['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta']169 ········['../structgmx_1_1DimParams_1_1FepDimParams.xhtml#ad3aa1edaec7f13643c5038ccc2a01a78',·1,·'gmx::DimParams::FepDimParams::beta']
Offset 182, 44 lines modifiedOffset 182, 44 lines modified
182 ····['bgeneratehh14interactions_102',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],182 ····['bgeneratehh14interactions_102',·['bGenerateHH14Interactions',·['../structPreprocessResidue.xhtml#a7ef40e3704969bcd360c3d5d94ee264b',·1,·'PreprocessResidue']]],
183 ····['bgroups_103',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],183 ····['bgroups_103',·['bGroups',·['../structgmx__sel__lexer__t.xhtml#a5bf6b14ef14775f440cd6a150acf22b0',·1,·'gmx_sel_lexer_t']]],
184 ····['bharmonic_104',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],184 ····['bharmonic_104',·['bHarmonic',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ad3c168d4052e3bc5a77dea8ff3a877fe',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
185 ····['bhelix_105',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],185 ····['bhelix_105',·['bHelix',·['../structt__bb.xhtml#a48c50f40d59ad266202feb100567d843',·1,·'t_bb']]],
186 ····['bhidden_5f_106',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],186 ····['bhidden_5f_106',·['bHidden_',·['../classgmx_1_1CommandLineHelpContext_1_1Impl.xhtml#a1a012091fc0390f509fcc3c55bd97092',·1,·'gmx::CommandLineHelpContext::Impl']]],
187 ····['bhistonly_107',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],187 ····['bhistonly_107',·['bHistOnly',·['../structUmbrellaOptions.xhtml#acdf67a7adadf17543b0433c028aa387a',·1,·'UmbrellaOptions']]],
188 ····['bhost_5funused_108',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],188 ····['bhost_5funused_108',·['bhost_UNUSED',·['../structCheckpointHeaderContents.xhtml#aef8c2b80e340df183cde5c1946fc64e5',·1,·'CheckpointHeaderContents']]],
 189 ····['bias_109',·['bias',·['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()'],
189 ····['bias_109',·['bias',·['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()'], 
190 ········['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias'], 
191 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],190 ········['../namespacegmx.xhtml#aed0429233bc357e419dafee7b8bd1344a4ad6b9e6418fd2d739906bd47e887ae3',·1,·'gmx::Bias'],
192 ········['../classgmx_1_1PointState.xhtml#a051fc887a154fd8e8429f772006ff597',·1,·'gmx::PointState::bias()']191 ········['../classgmx_1_1Bias.xhtml#a6ea05d388c5983d92b1e4f9216ec3c07',·1,·'gmx::Bias::Bias()'],
 192 ········['../classgmx_1_1Bias.xhtml',·1,·'gmx::Bias']
193 ····]],193 ····]],
194 ····['bias_2ecpp_110',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],194 ····['bias_2ecpp_110',·['bias.cpp',·['../bias_8cpp.xhtml',·1,·'']]],
195 ····['bias_2eh_111',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],195 ····['bias_2eh_111',·['bias.h',·['../bias_8h.xhtml',·1,·'']]],
196 ····['bias_5f_112',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],196 ····['bias_5f_112',·['bias_',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a915eb82b66d861dd5377036383b654f0',·1,·'gmx::BiasCoupledToSystem::bias_'],
197 ········['../classgmx_1_1test_1_1BiasTest.xhtml#af4806c866b09dce06db386eb0dcea407',·1,·'gmx::test::BiasTest::bias_'],197 ········['../classgmx_1_1test_1_1BiasTest.xhtml#af4806c866b09dce06db386eb0dcea407',·1,·'gmx::test::BiasTest::bias_'],
198 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_']198 ········['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml#ae7e39eda7a77d998b80c658f65fb9074',·1,·'gmx::test::BiasFepLambdaStateTest::bias_']
199 ····]],199 ····]],
200 ····['biascorrectedaverage_113',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],200 ····['biascorrectedaverage_113',·['biasCorrectedAverage',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a83f79db8f50129497cc5349b972ecabb',·1,·'gmx::ExponentialMovingAverage']]],
 201 ····['biascoupledtosystem_114',·['biascoupledtosystem',·['../structgmx_1_1BiasCoupledToSystem.xhtml',·1,·'gmx::BiasCoupledToSystem'],
201 ····['biascoupledtosystem_114',·['biascoupledtosystem',·['../structgmx_1_1BiasCoupledToSystem.xhtml#a0d55bb29484a8c71778a4bf70a3ddfd0',·1,·'gmx::BiasCoupledToSystem::BiasCoupledToSystem()'],202 ········['../structgmx_1_1BiasCoupledToSystem.xhtml#a0d55bb29484a8c71778a4bf70a3ddfd0',·1,·'gmx::BiasCoupledToSystem::BiasCoupledToSystem()']
202 ········['../structgmx_1_1BiasCoupledToSystem.xhtml',·1,·'gmx::BiasCoupledToSystem'] 
203 ····]],203 ····]],
204 ····['biasedlogweightfrompoint_115',·['biasedLogWeightFromPoint',·['../namespacegmx_1_1anonymous__namespace_02biasstate_8cpp_03.xhtml#a154728ee54b770144eeaee8650142f3f',·1,·'gmx::anonymous_namespace{biasstate.cpp}']]],204 ····['biasedlogweightfrompoint_115',·['biasedLogWeightFromPoint',·['../namespacegmx_1_1anonymous__namespace_02biasstate_8cpp_03.xhtml#a154728ee54b770144eeaee8650142f3f',·1,·'gmx::anonymous_namespace{biasstate.cpp}']]],
205 ····['biasesarecompatibleforsharingbetweensimulations_116',·['biasesAreCompatibleForSharingBetweenSimulations',·['../namespacegmx.xhtml#a161ff1b8f4e89a7136264bf0130c8627',·1,·'gmx']]],205 ····['biasesarecompatibleforsharingbetweensimulations_116',·['biasesAreCompatibleForSharingBetweenSimulations',·['../namespacegmx.xhtml#a161ff1b8f4e89a7136264bf0130c8627',·1,·'gmx']]],
206 ····['biasfeplambdastatetest_117',·['BiasFepLambdaStateTest',·['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml',·1,·'gmx::test']]],206 ····['biasfeplambdastatetest_117',·['BiasFepLambdaStateTest',·['../classgmx_1_1test_1_1BiasFepLambdaStateTest.xhtml',·1,·'gmx::test']]],
207 ····['biasgrid_118',·['biasgrid',·['../classgmx_1_1BiasGrid.xhtml',·1,·'gmx::BiasGrid'],207 ····['biasgrid_118',·['biasgrid',·['../classgmx_1_1BiasGrid.xhtml',·1,·'gmx::BiasGrid'],
208 ········['../classgmx_1_1BiasGrid.xhtml#a79cd36dafbb90c36bf2d88dd5c8d8171',·1,·'gmx::BiasGrid::BiasGrid()']208 ········['../classgmx_1_1BiasGrid.xhtml#a79cd36dafbb90c36bf2d88dd5c8d8171',·1,·'gmx::BiasGrid::BiasGrid()']
209 ····]],209 ····]],
210 ····['biasgrid_2ecpp_119',·['biasgrid.cpp',·['../biasgrid_8cpp.xhtml',·1,·'']]],210 ····['biasgrid_2ecpp_119',·['biasgrid.cpp',·['../biasgrid_8cpp.xhtml',·1,·'']]],
211 ····['biasgrid_2eh_120',·['biasgrid.h',·['../biasgrid_8h.xhtml',·1,·'']]],211 ····['biasgrid_2eh_120',·['biasgrid.h',·['../biasgrid_8h.xhtml',·1,·'']]],
212 ····['biasindex_121',·['biasIndex',·['../classgmx_1_1Bias.xhtml#aaa9ddb42d042542e30e4374487dd3198',·1,·'gmx::Bias']]],212 ····['biasindex_121',·['biasIndex',·['../classgmx_1_1Bias.xhtml#aaa9ddb42d042542e30e4374487dd3198',·1,·'gmx::Bias']]],
213 ····['biasindex_5f_122',·['biasIndex_',·['../classgmx_1_1BiasParams.xhtml#a4713cfcee75b921b834d234b3e775304',·1,·'gmx::BiasParams']]],213 ····['biasindex_5f_122',·['biasIndex_',·['../classgmx_1_1BiasParams.xhtml#a4713cfcee75b921b834d234b3e775304',·1,·'gmx::BiasParams']]],
214 ····['biasoutputsetup_123',·['biasoutputsetup',·['../structBiasOutputSetup.xhtml#a510f3876df7545def34fa6c6a1fe9856',·1,·'BiasOutputSetup::BiasOutputSetup()'],214 ····['biasoutputsetup_123',·['biasoutputsetup',·['../structBiasOutputSetup.xhtml#a510f3876df7545def34fa6c6a1fe9856',·1,·'BiasOutputSetup::BiasOutputSetup()'],
215 ········['../structBiasOutputSetup.xhtml',·1,·'BiasOutputSetup']215 ········['../structBiasOutputSetup.xhtml',·1,·'BiasOutputSetup']
216 ····]],216 ····]],
217 ····['biasparams_124',·['biasparams',·['../classgmx_1_1BiasParams.xhtml',·1,·'gmx::BiasParams'], 
218 ········['../classgmx_1_1BiasParams.xhtml#a34258b327dcbfe7690e74b992b938aae',·1,·'gmx::BiasParams::BiasParams()']217 ····['biasparams_124',·['biasparams',·['../classgmx_1_1BiasParams.xhtml#a34258b327dcbfe7690e74b992b938aae',·1,·'gmx::BiasParams::BiasParams()'],
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144 ····['c_5fnbnxnlistsizefactorgpu_113',·['c_nbnxnListSizeFactorGPU',·['../namespacegmx.xhtml#af6d5e72407fa960b131ac2b97cc5c1ef',·1,·'gmx']]],144 ····['c_5fnbnxnlistsizefactorgpu_113',·['c_nbnxnListSizeFactorGPU',·['../namespacegmx.xhtml#af6d5e72407fa960b131ac2b97cc5c1ef',·1,·'gmx']]],
145 ····['c_5fnbnxnlistsizefactorintelxeonphi_114',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../namespacegmx.xhtml#a66502134e5eb3aeccaa92d5fd5c3107d',·1,·'gmx']]],145 ····['c_5fnbnxnlistsizefactorintelxeonphi_114',·['c_nbnxnListSizeFactorIntelXeonPhi',·['../namespacegmx.xhtml#a66502134e5eb3aeccaa92d5fd5c3107d',·1,·'gmx']]],
146 ····['c_5fnbnxnlistsizefactormargin_115',·['c_nbnxnListSizeFactorMargin',·['../namespacegmx.xhtml#a5a22f8b4faac5d466c4f02b158b5a361',·1,·'gmx']]],146 ····['c_5fnbnxnlistsizefactormargin_115',·['c_nbnxnListSizeFactorMargin',·['../namespacegmx.xhtml#a5a22f8b4faac5d466c4f02b158b5a361',·1,·'gmx']]],
147 ····['c_5fnbnxnmindistancesquared_116',·['c_nbnxnMinDistanceSquared',·['../namespacegmx.xhtml#a7ecc092df63d887998b03ebf9b041fee',·1,·'gmx']]],147 ····['c_5fnbnxnmindistancesquared_116',·['c_nbnxnMinDistanceSquared',·['../namespacegmx.xhtml#a7ecc092df63d887998b03ebf9b041fee',·1,·'gmx']]],
148 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],148 ····['c_5fnmtomrcunits_117',·['c_nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a084c836f7f75cc97b5c92d3fa400dc70',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
149 ····['c_5fnnpotmodulename_118',·['c_nnpotModuleName',·['../namespacegmx.xhtml#a29db5676487ac7189bbe96691b95cc6d',·1,·'gmx']]],149 ····['c_5fnnpotmodulename_118',·['c_nnpotModuleName',·['../namespacegmx.xhtml#a29db5676487ac7189bbe96691b95cc6d',·1,·'gmx']]],
150 ····['c_5fnormalizationnames_119',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],150 ····['c_5fnormalizationnames_119',·['c_normalizationNames',·['../group__module__trajectoryanalysis.xhtml#gafe9e3ae6c83f2aeb21e0ad8841e3b0e2',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}']]],
151 ····['c_5fnumatoms_120',·['c_numatoms',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],151 ····['c_5fnumatoms_120',·['c_numatoms',·['../namespacegmx_1_1test_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#a4a0a79bb04de0656b32b35e3d13fac9c',·1,·'gmx::test::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms'],
152 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms'],152 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03.xhtml#ab0d16511710d3d446c4ebe139a1a93d8',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::c_numAtoms'],
153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#a4a0a79bb04de0656b32b35e3d13fac9c',·1,·'gmx::test::anonymous_namespace{wholemoleculetransform.cpp}::c_numAtoms'],153 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a60f4b0f65ad59fda745897b8764dae0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_numAtoms'],
154 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03.xhtml#a9e6451d690e56d5db0395022cefa888c',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::c_numAtoms']154 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03.xhtml#a9e6451d690e56d5db0395022cefa888c',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::c_numAtoms']
155 ····]],155 ····]],
156 ····['c_5fnumbonds_121',·['c_numBonds',·['../namespacegmx_1_1test_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#ae110a0f5e65d4f5cf02206f0df72a038',·1,·'gmx::test::anonymous_namespace{wholemoleculetransform.cpp}']]],156 ····['c_5fnumbonds_121',·['c_numBonds',·['../namespacegmx_1_1test_1_1anonymous__namespace_02wholemoleculetransform_8cpp_03.xhtml#ae110a0f5e65d4f5cf02206f0df72a038',·1,·'gmx::test::anonymous_namespace{wholemoleculetransform.cpp}']]],
157 ····['c_5fnumboundingboxbounds1d_122',·['c_numBoundingBoxBounds1D',·['../namespacegmx.xhtml#a991d17595deb2abcd922d96aec69d1db',·1,·'gmx']]],157 ····['c_5fnumboundingboxbounds1d_122',·['c_numBoundingBoxBounds1D',·['../namespacegmx.xhtml#a991d17595deb2abcd922d96aec69d1db',·1,·'gmx']]],
158 ····['c_5fnumcorrelationblocks_123',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],158 ····['c_5fnumcorrelationblocks_123',·['c_numCorrelationBlocks',·['../classgmx_1_1CorrelationTensor.xhtml#a3bacb906f9931328bddd22c8e218c9d4',·1,·'gmx::CorrelationTensor']]],
159 ····['c_5fnumeigenrealsperexperiment_124',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],159 ····['c_5fnumeigenrealsperexperiment_124',·['c_numEigenRealsPerExperiment',·['../structt__oriresdata.xhtml#a19c8ceb03fed76dc54909c852ea83321',·1,·'t_oriresdata']]],
160 ····['c_5fnumelectypes_125',·['c_numElecTypes',·['../namespacegmx.xhtml#a3865067eb3fb992ca03ab7795d6fa30a',·1,·'gmx']]],160 ····['c_5fnumelectypes_125',·['c_numElecTypes',·['../namespacegmx.xhtml#a3865067eb3fb992ca03ab7795d6fa30a',·1,·'gmx']]],
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167 ····['c_5fnvshmemthreadsperblock_132',·['c_nvshmemThreadsPerBlock',·['../structgmx_1_1nvshmemHaloExchangeOps.xhtml#a22e6540428666f369082aa85111f0114',·1,·'gmx::nvshmemHaloExchangeOps']]],167 ····['c_5fnvshmemthreadsperblock_132',·['c_nvshmemThreadsPerBlock',·['../structgmx_1_1nvshmemHaloExchangeOps.xhtml#a22e6540428666f369082aa85111f0114',·1,·'gmx::nvshmemHaloExchangeOps']]],
168 ····['c_5foldestsupportedmagicnumber_133',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],168 ····['c_5foldestsupportedmagicnumber_133',·['c_oldestSupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#afb8f8255516cbf4c08e51ee7cface65b',·1,·'anonymous_namespace{edsam.cpp}']]],
169 ····['c_5foldestunsupportedmagicnumber_134',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],169 ····['c_5foldestunsupportedmagicnumber_134',·['c_oldestUnsupportedMagicNumber',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#a3d1dc11b4252282579382b89abd9d815',·1,·'anonymous_namespace{edsam.cpp}']]],
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172 ····['c_5fpackx8_137',·['c_packX8',·['../namespacegmx.xhtml#aeed0b85513edbdaa3190b188faa6aede',·1,·'gmx']]],172 ····['c_5fpackx8_137',·['c_packX8',·['../namespacegmx.xhtml#aeed0b85513edbdaa3190b188faa6aede',·1,·'gmx']]],
173 ····['c_5fpbcfortests_138',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03.xhtml#a8716925dfcab1e34ee190aa91b188f0a',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::c_pbcForTests'],173 ····['c_5fpbcfortests_138',·['c_pbcfortests',·['../namespacegmx_1_1test_1_1anonymous__namespace_02position__restraints_8cpp_03.xhtml#a3f98f7220875de5238f25cb8ef1a380e',·1,·'gmx::test::anonymous_namespace{position_restraints.cpp}::c_pbcForTests'],
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179 ····['c_5fpmeatomdatablocksize_141',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],179 ····['c_5fpmeatomdatablocksize_141',·['c_pmeAtomDataBlockSize',·['../pme__gpu__internal_8cpp.xhtml#a9751dab48d98743b36ad4d6eee89aab6',·1,·'pme_gpu_internal.cpp']]],
180 ····['c_5fpmegpuorder_142',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],180 ····['c_5fpmegpuorder_142',·['c_pmeGpuOrder',·['../pme__gpu__constants_8h.xhtml#a8027cdc3ec057297fa567378562d892e',·1,·'pme_gpu_constants.h']]],
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194 ····['c_5fresiduenumberingtypenames_156',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],194 ····['c_5fresiduenumberingtypenames_156',·['c_residueNumberingTypeNames',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02select_8cpp_03.xhtml#aacce3e6b8a3d818ebca234f667803dd9',·1,·'gmx::analysismodules::anonymous_namespace{select.cpp}']]],
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196 ········['../structgmx_1_1NBParamGpu.xhtml#a3ba2156cdbb0c7d0358e8b1002780761',·1,·'gmx::NBParamGpu::c_rf'] 
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199 ····['c_5frootnodename_159',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],199 ····['c_5frootnodename_159',·['c_RootNodeName',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#af8fced14cf0f669ed507c1d04af58fe2',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
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202 ····['c_5fscisortingthreadsperblock_162',·['c_sciSortingThreadsPerBlock',·['../namespacegmx.xhtml#afbb6400bc4724a357e26564e35fa996b',·1,·'gmx']]],202 ····['c_5fscisortingthreadsperblock_162',·['c_sciSortingThreadsPerBlock',·['../namespacegmx.xhtml#afbb6400bc4724a357e26564e35fa996b',·1,·'gmx']]],
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228 ····['c_5funknown_186',·['c_unknown',·['../namespaceanonymous__namespace_02sysinfo_8cpp_03.xhtml#ad4a20f207d75277ec8c8f9d8cef88fd3',·1,·'anonymous_namespace{sysinfo.cpp}']]],228 ····['c_5funknown_186',·['c_unknown',·['../namespaceanonymous__namespace_02sysinfo_8cpp_03.xhtml#ad4a20f207d75277ec8c8f9d8cef88fd3',·1,·'anonymous_namespace{sysinfo.cpp}']]],
229 ····['c_5fusedelayedwait_187',·['c_useDelayedWait',·['../pme__pp_8cpp.xhtml#a2e369172045aa7262c8f217f3eb9c35a',·1,·'pme_pp.cpp']]],229 ····['c_5fusedelayedwait_187',·['c_useDelayedWait',·['../pme__pp_8cpp.xhtml#a2e369172045aa7262c8f217f3eb9c35a',·1,·'pme_pp.cpp']]],
230 ····['c_5fversiondeclarationstring_188',·['c_VersionDeclarationString',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a1339168f3e2f4e9e7ef6d237af203de5',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],230 ····['c_5fversiondeclarationstring_188',·['c_VersionDeclarationString',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a1339168f3e2f4e9e7ef6d237af203de5',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
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232 ····['c_5fwaterpositions_190',·['c_waterPositions',·['../namespacegmx_1_1test.xhtml#a9329c087051c3222ed27a5029278ac90',·1,·'gmx::test']]],232 ····['c_5fwaterpositions_190',·['c_waterPositions',·['../namespacegmx_1_1test.xhtml#a9329c087051c3222ed27a5029278ac90',·1,·'gmx::test']]],
233 ····['c_5fxvgformatnames_191',·['c_xvgformatnames',·['../namespacegmx.xhtml#ab9bc40c2a1ef7bbf8b7cd0671702f720',·1,·'gmx::c_xvgFormatNames'], 
234 ········['../namespacegmx_1_1anonymous__namespace_02pargs_8cpp_03.xhtml#afe48c42da00d80d1811918be03801c87',·1,·'gmx::anonymous_namespace{pargs.cpp}::c_xvgFormatNames']233 ····['c_5fxvgformatnames_191',·['c_xvgformatnames',·['../namespacegmx_1_1anonymous__namespace_02pargs_8cpp_03.xhtml#afe48c42da00d80d1811918be03801c87',·1,·'gmx::anonymous_namespace{pargs.cpp}::c_xvgFormatNames'],
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235 ····]],235 ····]],
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537 ····['checkenergycaluclationfrequency_403',·['checkEnergyCaluclationFrequency',·['../classgmx_1_1DensityFittingOptions.xhtml#a64787eff57d350cee2e13b2c1097270d',·1,·'gmx::DensityFittingOptions']]],537 ····['checkenergycaluclationfrequency_403',·['checkEnergyCaluclationFrequency',·['../classgmx_1_1DensityFittingOptions.xhtml#a64787eff57d350cee2e13b2c1097270d',·1,·'gmx::DensityFittingOptions']]],
538 ····['checkenergygroups_404',·['checkEnergyGroups',·['../classgmx_1_1TestParticleInsertion.xhtml#a35bb780b31122e7bc2a7a66c3385dadb',·1,·'gmx::TestParticleInsertion']]],538 ····['checkenergygroups_404',·['checkEnergyGroups',·['../classgmx_1_1TestParticleInsertion.xhtml#a35bb780b31122e7bc2a7a66c3385dadb',·1,·'gmx::TestParticleInsertion']]],
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540 ····['checkequalcaseinsensitive_406',·['checkEqualCaseInsensitive',·['../namespacegmx_1_1test_1_1anonymous__namespace_02stringutil_8cpp_03.xhtml#ac8f1f81f4e3436b8691a3238729715f6',·1,·'gmx::test::anonymous_namespace{stringutil.cpp}']]],540 ····['checkequalcaseinsensitive_406',·['checkEqualCaseInsensitive',·['../namespacegmx_1_1test_1_1anonymous__namespace_02stringutil_8cpp_03.xhtml#ac8f1f81f4e3436b8691a3238729715f6',·1,·'gmx::test::anonymous_namespace{stringutil.cpp}']]],
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543 ········['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a0f800c418ac71536bcab6e51b55969c1',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::checker_'],542 ····['checker_5f_408',·['checker_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a0f800c418ac71536bcab6e51b55969c1',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::checker_'],
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548 ····['checkfeplambdadimdecouplingconsistency_410',·['checkFepLambdaDimDecouplingConsistency',·['../namespacegmx_1_1anonymous__namespace_02read__params_8cpp_03.xhtml#a6f3130dffe6f1eb12ce1769a34b72051',·1,·'gmx::anonymous_namespace{read_params.cpp}']]],548 ····['checkfeplambdadimdecouplingconsistency_410',·['checkFepLambdaDimDecouplingConsistency',·['../namespacegmx_1_1anonymous__namespace_02read__params_8cpp_03.xhtml#a6f3130dffe6f1eb12ce1769a34b72051',·1,·'gmx::anonymous_namespace{read_params.cpp}']]],
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553 ····['checkfinalvelocities_415',·['checkFinalVelocities',·['../classgmx_1_1test_1_1anonymous__namespace_02settle_8cpp_03_1_1SettleTest.xhtml#aa8da7b35432e349fb41e93d9726a13c4',·1,·'gmx::test::anonymous_namespace{settle.cpp}::SettleTest']]],553 ····['checkfinalvelocities_415',·['checkFinalVelocities',·['../classgmx_1_1test_1_1anonymous__namespace_02settle_8cpp_03_1_1SettleTest.xhtml#aa8da7b35432e349fb41e93d9726a13c4',·1,·'gmx::test::anonymous_namespace{settle.cpp}::SettleTest']]],
554 ····['checkfinds_416',·['checkFinds',·['../namespacegmx_1_1test_1_1anonymous__namespace_02hashedmap_8cpp_03.xhtml#aa7c6e9e7ce64e221c97cbd3ee960e1af',·1,·'gmx::test::anonymous_namespace{hashedmap.cpp}']]],554 ····['checkfinds_416',·['checkFinds',·['../namespacegmx_1_1test_1_1anonymous__namespace_02hashedmap_8cpp_03.xhtml#aa7c6e9e7ce64e221c97cbd3ee960e1af',·1,·'gmx::test::anonymous_namespace{hashedmap.cpp}']]],
555 ····['checkfloat_417',·['checkFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a31ba9bdb3e27ca53dff300346ada68aa',·1,·'gmx::test::TestReferenceChecker']]],555 ····['checkfloat_417',·['checkFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a31ba9bdb3e27ca53dff300346ada68aa',·1,·'gmx::test::TestReferenceChecker']]],
556 ····['checkforcesagainstreference_418',·['checkForcesAgainstReference',·['../namespacegmx_1_1test.xhtml#a578d74e6b2e47f9ce2e9fab1f81b280b',·1,·'gmx::test']]],556 ····['checkforcesagainstreference_418',·['checkForcesAgainstReference',·['../namespacegmx_1_1test.xhtml#a578d74e6b2e47f9ce2e9fab1f81b280b',·1,·'gmx::test']]],
557 ····['checkforseparatepmeranks_419',·['checkforseparatepmeranks',·['../domdec__setup_8h.xhtml#af1353f4ea0011741695cb578cb3dae76',·1,·'checkForSeparatePmeRanks(const·gmx::MDModulesNotifiers·&amp;notifiers,·const·gmx::DomdecOptions·&amp;options,·int·numRanksRequested,·bool·useGpuForNonbonded,·bool·useGpuForPme,·bool·canUseGpuPmeDecomposition):&#160;domdec_setup.cpp'],557 ····['checkforseparatepmeranks_419',·['checkforseparatepmeranks',·['../domdec__setup_8cpp.xhtml#abea3f9ee4e00310dbe1d1312c68f9f5e',·1,·'checkForSeparatePmeRanks(const·gmx::MDModulesNotifiers·&amp;notifiers,·const·DomdecOptions·&amp;options,·int·numRanksRequested,·bool·useGpuForNonbonded,·bool·useGpuForPme,·bool·canUseGpuPmeDecomposition):&#160;domdec_setup.cpp'],
558 ········['../domdec__setup_8cpp.xhtml#abea3f9ee4e00310dbe1d1312c68f9f5e',·1,·'checkForSeparatePmeRanks(const·gmx::MDModulesNotifiers·&amp;notifiers,·const·DomdecOptions·&amp;options,·int·numRanksRequested,·bool·useGpuForNonbonded,·bool·useGpuForPme,·bool·canUseGpuPmeDecomposition):&#160;domdec_setup.cpp']558 ········['../domdec__setup_8h.xhtml#af1353f4ea0011741695cb578cb3dae76',·1,·'checkForSeparatePmeRanks(const·gmx::MDModulesNotifiers·&amp;notifiers,·const·gmx::DomdecOptions·&amp;options,·int·numRanksRequested,·bool·useGpuForNonbonded,·bool·useGpuForPme,·bool·canUseGpuPmeDecomposition):&#160;domdec_setup.cpp']
559 ····]],559 ····]],
560 ····['checkforunknownoptionsinkeyvaluetree_420',·['checkForUnknownOptionsInKeyValueTree',·['../group__module__options.xhtml#ga7c18bea4ebc5cb035834d3f117906952',·1,·'gmx']]],560 ····['checkforunknownoptionsinkeyvaluetree_420',·['checkForUnknownOptionsInKeyValueTree',·['../group__module__options.xhtml#ga7c18bea4ebc5cb035834d3f117906952',·1,·'gmx']]],
561 ····['checkforvalidrankcountrequests_421',·['checkforvalidrankcountrequests',·['../domdec__setup_8cpp.xhtml#aed2618a87839573af9df2e83420750ce',·1,·'checkForValidRankCountRequests(const·int·numRanksRequested,·const·bool·usingPme,·const·int·numPmeRanksRequested,·const·gmx::SeparatePmeRanksPermitted·&amp;separatePmeRanksPermitted,·const·bool·checkForLargePrimeFactors):&#160;domdec_setup.cpp'],561 ····['checkforvalidrankcountrequests_421',·['checkforvalidrankcountrequests',·['../domdec__setup_8cpp.xhtml#aed2618a87839573af9df2e83420750ce',·1,·'checkForValidRankCountRequests(const·int·numRanksRequested,·const·bool·usingPme,·const·int·numPmeRanksRequested,·const·gmx::SeparatePmeRanksPermitted·&amp;separatePmeRanksPermitted,·const·bool·checkForLargePrimeFactors):&#160;domdec_setup.cpp'],
562 ········['../domdec__setup_8h.xhtml#aad075b3a3e31c174bccf7d2e31ede565',·1,·'checkForValidRankCountRequests(int·numRanksRequested,·bool·usingPme,·int·numPmeRanksRequested,·const·gmx::SeparatePmeRanksPermitted·&amp;separatePmeRanksPermitted,·bool·checkForLargePrimeFactors):&#160;domdec_setup.cpp']562 ········['../domdec__setup_8h.xhtml#aad075b3a3e31c174bccf7d2e31ede565',·1,·'checkForValidRankCountRequests(int·numRanksRequested,·bool·usingPme,·int·numPmeRanksRequested,·const·gmx::SeparatePmeRanksPermitted·&amp;separatePmeRanksPermitted,·bool·checkForLargePrimeFactors):&#160;domdec_setup.cpp']
563 ····]],563 ····]],
564 ····['checkframe_422',·['checkFrame',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mock__datamodule_8cpp_03.xhtml#a12c94937d1b66aa12c1f1e34affe5866',·1,·'gmx::test::anonymous_namespace{mock_datamodule.cpp}']]],564 ····['checkframe_422',·['checkFrame',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mock__datamodule_8cpp_03.xhtml#a12c94937d1b66aa12c1f1e34affe5866',·1,·'gmx::test::anonymous_namespace{mock_datamodule.cpp}']]],
565 ····['checkgpu_423',·['checkGpu',·['../namespacegmx.xhtml#a7ae7d9258116984d71d4ba590adefd1c',·1,·'gmx']]],565 ····['checkgpu_423',·['checkGpu',·['../namespacegmx.xhtml#a7ae7d9258116984d71d4ba590adefd1c',·1,·'gmx']]],
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577 ····['checkkernelsetup_435',·['checkKernelSetup',·['../namespacegmx.xhtml#a9af859e99a0de1ce603d94d97447210d',·1,·'gmx']]],577 ····['checkkernelsetup_435',·['checkKernelSetup',·['../namespacegmx.xhtml#a9af859e99a0de1ce603d94d97447210d',·1,·'gmx']]],
578 ····['checkkeyvaluetreeobject_436',·['checkKeyValueTreeObject',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#aadb0319268d598086d62cc3f382be5a6',·1,·'gmx::test::TestReferenceChecker']]],578 ····['checkkeyvaluetreeobject_436',·['checkKeyValueTreeObject',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#aadb0319268d598086d62cc3f382be5a6',·1,·'gmx::test::TestReferenceChecker']]],
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580 ····['checklogicalprocessor_438',·['checkLogicalProcessor',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a7404c1100695ed0bf1f5c0118be797b0',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],580 ····['checklogicalprocessor_438',·['checkLogicalProcessor',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a7404c1100695ed0bf1f5c0118be797b0',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],
581 ····['checkmachine_439',·['checkMachine',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#ae0ef6cae2955d46224d11e3142be62d2',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],581 ····['checkmachine_439',·['checkMachine',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#ae0ef6cae2955d46224d11e3142be62d2',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],
582 ····['checkmap_440',·['checkMap',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#afbe67a80d052967f14c5d9fa29be3724',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],582 ····['checkmap_440',·['checkMap',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#afbe67a80d052967f14c5d9fa29be3724',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]],
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583 ····['checkmdrun_441',·['checkmdrun',·['../classgmx_1_1test_1_1BondedInteractionsTest.xhtml#aa31fa5008e7d3dda56c2018fb2f3de78',·1,·'gmx::test::BondedInteractionsTest::checkMdrun()'],584 ········['../classgmx_1_1test_1_1BondedInteractionsTest.xhtml#aa31fa5008e7d3dda56c2018fb2f3de78',·1,·'gmx::test::BondedInteractionsTest::checkMdrun()']
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471 ····]],471 ····]],
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476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],
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478 ····['densityfittingmodule_2ecpp_290',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],478 ····['densityfittingmodule_2ecpp_290',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
479 ····['densityfittingmoduleinfo_291',·['DensityFittingModuleInfo',·['../structgmx_1_1DensityFittingModuleInfo.xhtml',·1,·'gmx']]],479 ····['densityfittingmoduleinfo_291',·['DensityFittingModuleInfo',·['../structgmx_1_1DensityFittingModuleInfo.xhtml',·1,·'gmx']]],
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481 ····['densityfittingoptions_2ecpp_293',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],481 ····['densityfittingoptions_2ecpp_293',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
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485 ····['densityfittingoutputprovider_295',·['DensityFittingOutputProvider',·['../classgmx_1_1DensityFittingOutputProvider.xhtml',·1,·'gmx']]],485 ····['densityfittingoutputprovider_295',·['DensityFittingOutputProvider',·['../classgmx_1_1DensityFittingOutputProvider.xhtml',·1,·'gmx']]],
486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],
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488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],
489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],
490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],
491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],
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493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation']493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation']
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495 ····['densitysimilarityinnerproduct_303',·['densitysimilarityinnerproduct',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::Dens[·...·truncated·by·diffoscope;·len:·61,·SHA:·4636867a6d35377b8b39d710f5ff921707cef916e32f4b45ed1bf6064cde6e60·...·]496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::DensitySimilarityInnerProduct()']
496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct'] 
497 ····]],497 ····]],
498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure()'],498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasureMethod·method,·density·referenceDensity)'],
499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml',·1,·'gmx::DensitySimilarityMeasure'], 
500 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept'],499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept'],
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501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#aa928209c9b6274f37b3feb27487982e0',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(const·DensitySimilarityMeasure·&amp;other)']501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#aa928209c9b6274f37b3feb27487982e0',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure()']
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504 ····['densitysimilarityrelativeentropy_306',·['densitysimilarityrelativeentropy',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a74837f6fde669bc6fb1acf9467aa6135',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::DensitySimilarityRelativeEntropy()'],504 ····['densitysimilarityrelativeentropy_306',·['densitysimilarityrelativeentropy',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml#a74837f6fde669bc6fb1acf9467aa6135',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy::DensitySimilarityRelativeEntropy()'],
505 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']505 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityRelativeEntropy.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityRelativeEntropy']
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508 ····['derivative_308',·['derivative',·['../structgmx_1_1AnalyticalSplineTableInput.xhtml#a5163c472ec0200cd6c48dbe7075fb5f7',·1,·'gmx::AnalyticalSplineTableInput::derivative'],509 ········['../structgmx_1_1AnalyticalSplineTableInput.xhtml#a5163c472ec0200cd6c48dbe7075fb5f7',·1,·'gmx::AnalyticalSplineTableInput::derivative']
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523 ········['../structgmx_1_1SelectionOptionManager_1_1Impl_1_1SelectionRequest.xhtml#a6777db2e9afb678f3ff6ac689de39250',·1,·'gmx::SelectionOptionManager::Impl::SelectionRequest::description()'],522 ····['description_312',·['description',·['../structgmx_1_1SelectionOptionManager_1_1Impl_1_1SelectionRequest.xhtml#a6777db2e9afb678f3ff6ac689de39250',·1,·'gmx::SelectionOptionManager::Impl::SelectionRequest::description()'],
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528 ····['deserialize_314',·['deserialize',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml#a573409925bc2f6892828dc2d554f880f',·1,·'gmx::ReadCheckpointDataHolder']]],528 ····['deserialize_314',·['deserialize',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml#a573409925bc2f6892828dc2d554f880f',·1,·'gmx::ReadCheckpointDataHolder']]],
529 ····['deserializedeviceinformations_315',·['deserializedeviceinformations',·['../device__management__common_8cpp.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],529 ····['deserializedeviceinformations_315',·['deserializedeviceinformations',·['../device__management__common_8cpp.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],
530 ········['../device__management_8h.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp']530 ········['../device__management_8h.xhtml#ac3e3321880ed36de04c55efebb5fcbef',·1,·'deserializeDeviceInformations(gmx::ISerializer·*serializer):&#160;device_management_common.cpp']
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271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],
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57 ····['fepdimparams_31',·['fepdimparams',·['../structgmx_1_1DimParams_1_1FepDimParams.xhtml',·1,·'gmx::DimParams::FepDimParams'], 
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60 ····['feplambdadimparams_32',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],60 ····['feplambdadimparams_32',·['fepLambdaDimParams',·['../structgmx_1_1DimParams.xhtml#a7dc64a12c8e1081550e64f355b5a0682',·1,·'gmx::DimParams']]],
61 ····['feplambdastate_33',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],61 ····['feplambdastate_33',·['fepLambdaState',·['../classgmx_1_1Awh.xhtml#adfc3a70dde1b72c20abe5688cf98d4ba',·1,·'gmx::Awh']]],
62 ····['feplists_34',·['fepLists',·['../classgmx_1_1PairlistSet.xhtml#a2f86424e43ae14d1334dc9485c40b876',·1,·'gmx::PairlistSet']]],62 ····['feplists_34',·['fepLists',·['../classgmx_1_1PairlistSet.xhtml#a2f86424e43ae14d1334dc9485c40b876',·1,·'gmx::PairlistSet']]],
63 ····['fepstatesetting_35',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],63 ····['fepstatesetting_35',·['FepStateSetting',·['../classgmx_1_1FepStateSetting.xhtml',·1,·'gmx']]],
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64 ····['fepstatevalue_36',·['fepstatevalue',·['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;'],65 ········['../structFEPStateValue.xhtml',·1,·'FEPStateValue&lt;·T·&gt;'],
65 ········['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()=default'],66 ········['../structFEPStateValue.xhtml#a638b5206f78383252ae56f4a257fb922',·1,·'FEPStateValue::FEPStateValue()=default'],
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67 ········['../structFEPStateValue.xhtml#ad203d2ae99649841dd5ecd72f015167a',·1,·'FEPStateValue::FEPStateValue(T·valueA,·T·valueB)'] 
68 ····]],68 ····]],
69 ····['fepstatevalue_3c_20nameholder_20_3e_37',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],69 ····['fepstatevalue_3c_20nameholder_20_3e_37',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
70 ····['fepstatevalue_3c_20real_20_3e_38',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],70 ····['fepstatevalue_3c_20real_20_3e_38',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
71 ····['fepstatevalue_3c_20unsigned_20short_20_3e_39',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],71 ····['fepstatevalue_3c_20unsigned_20short_20_3e_39',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
72 ····['fetchcoulombforcer_40',·['fetchCoulombForceR',·['../namespacegmx.xhtml#af4358df7df7ec8c2d2ad3014049c9ff0',·1,·'gmx']]],72 ····['fetchcoulombforcer_40',·['fetchCoulombForceR',·['../namespacegmx.xhtml#af4358df7df7ec8c2d2ad3014049c9ff0',·1,·'gmx']]],
73 ····['fetchfromparamlookuptable_41',·['fetchFromParamLookupTable',·['../hip__kernel__utils_8h.xhtml#a7ad14d6bc00ea67ddd8c5435c07a8881',·1,·'hip_kernel_utils.h']]],73 ····['fetchfromparamlookuptable_41',·['fetchFromParamLookupTable',·['../hip__kernel__utils_8h.xhtml#a7ad14d6bc00ea67ddd8c5435c07a8881',·1,·'hip_kernel_utils.h']]],
74 ····['fetchnextevent_42',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'],74 ····['fetchnextevent_42',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'],
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97 ····['fftdirection_63',·['FftDirection',·['../namespacegmx.xhtml#a3b8adf5cda6c87a7130079f61f4b7e72',·1,·'gmx']]],97 ····['fftdirection_63',·['FftDirection',·['../namespacegmx.xhtml#a3b8adf5cda6c87a7130079f61f4b7e72',·1,·'gmx']]],
98 ····['fftsetup_64',·['fftSetup',·['../structPmeGpuSpecific.xhtml#aad82d2b99a94ed427226076d786a5886',·1,·'PmeGpuSpecific']]],98 ····['fftsetup_64',·['fftSetup',·['../structPmeGpuSpecific.xhtml#aad82d2b99a94ed427226076d786a5886',·1,·'PmeGpuSpecific']]],
99 ····['ffwrite_65',·['ffWRITE',·['../group__module__commandline.xhtml#ga7631b25f5be9959c84dd7acc96bc04dd',·1,·'filenm.h']]],99 ····['ffwrite_65',·['ffWRITE',·['../group__module__commandline.xhtml#ga7631b25f5be9959c84dd7acc96bc04dd',·1,·'filenm.h']]],
100 ····['ffwrmult_66',·['ffWRMULT',·['../group__module__commandline.xhtml#ga0a9ba9e80fcdc4a36537189bf0b2e092',·1,·'filenm.h']]],100 ····['ffwrmult_66',·['ffWRMULT',·['../group__module__commandline.xhtml#ga0a9ba9e80fcdc4a36537189bf0b2e092',·1,·'filenm.h']]],
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103 ····['file_69',·['file',·['../structgmx_1_1ThrowLocation.xhtml#a8346a1ead40423ed29d2f2786ad80a80',·1,·'gmx::ThrowLocation::file'], 
104 ········['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154a0b27918290ff5323bea1e3b78a9cf04e',·1,·'gmx::test::File']103 ····['file_69',·['file',·['../namespacegmx_1_1test.xhtml#a5b76a571a22b4c47f7dab283e6674154a0b27918290ff5323bea1e3b78a9cf04e',·1,·'gmx::test::File'],
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107 ····['file_5f_71',·['file_',·['../classgmx_1_1HelpWriterContext_1_1Impl_1_1SharedState.xhtml#ac3ef14a847add39489a2807ec25a4706',·1,·'gmx::HelpWriterContext::Impl::SharedState']]],107 ····['file_5f_71',·['file_',·['../classgmx_1_1HelpWriterContext_1_1Impl_1_1SharedState.xhtml#ac3ef14a847add39489a2807ec25a4706',·1,·'gmx::HelpWriterContext::Impl::SharedState']]],
108 ····['file_5fversion_72',·['file_version',·['../structCheckpointHeaderContents.xhtml#aa30be23ce197759be9ace7e076d116bf',·1,·'CheckpointHeaderContents']]],108 ····['file_5fversion_72',·['file_version',·['../structCheckpointHeaderContents.xhtml#aa30be23ce197759be9ace7e076d116bf',·1,·'CheckpointHeaderContents']]],
109 ····['filebase_73',·['filebase',·['../structMoleculePatchDatabase.xhtml#ae19967539edd91c420f87eb820136971',·1,·'MoleculePatchDatabase::filebase'],109 ····['filebase_73',·['filebase',·['../structMoleculePatchDatabase.xhtml#ae19967539edd91c420f87eb820136971',·1,·'MoleculePatchDatabase::filebase'],
110 ········['../structPreprocessResidue.xhtml#ae814d77fe9dc87042f21aacc06cadbcf',·1,·'PreprocessResidue::filebase']110 ········['../structPreprocessResidue.xhtml#ae814d77fe9dc87042f21aacc06cadbcf',·1,·'PreprocessResidue::filebase']
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112 ····['fileexists_74',·['fileexists',·['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()'],112 ····['fileexists_74',·['fileexists',·['../classgmx_1_1anonymous__namespace_02fileredirector_8cpp_03_1_1DefaultInputRedirector.xhtml#a9f8e883f93e991222d5d6090ea789831',·1,·'gmx::anonymous_namespace{fileredirector.cpp}::DefaultInputRedirector::fileExists()'],
113 ········['../classgmx_1_1IFileInputRedirector.xhtml#ada681906817a3597190bc682ebd3dfe0',·1,·'gmx::IFileInputRedirector::fileExists()'],113 ········['../classgmx_1_1IFileInputRedirector.xhtml#ada681906817a3597190bc682ebd3dfe0',·1,·'gmx::IFileInputRedirector::fileExists()'],
114 ········['../classgmx_1_1anonymous__namespace_02fileredirector_8cpp_03_1_1DefaultInputRedirector.xhtml#a9f8e883f93e991222d5d6090ea789831',·1,·'gmx::anonymous_namespace{fileredirector.cpp}::DefaultInputRedirector::fileExists()']114 ········['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()']
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117 ····['fileindex_76',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]],117 ····['fileindex_76',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]],
118 ····['fileioerror_77',·['fileioerror',·['../classgmx_1_1FileIOError.xhtml',·1,·'gmx::FileIOError'], 
119 ········['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()']118 ····['fileioerror_77',·['fileioerror',·['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()'],
 119 ········['../classgmx_1_1FileIOError.xhtml',·1,·'gmx::FileIOError']
120 ····]],120 ····]],
121 ····['fileioxdrserializer_78',·['fileioxdrserializer',·['../classgmx_1_1FileIOXdrSerializer.xhtml',·1,·'gmx::FileIOXdrSerializer'], 
122 ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a91b67e0ad48c2cb8908fbd70bfcb61ed',·1,·'gmx::FileIOXdrSerializer::FileIOXdrSerializer()']121 ····['fileioxdrserializer_78',·['fileioxdrserializer',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a91b67e0ad48c2cb8908fbd70bfcb61ed',·1,·'gmx::FileIOXdrSerializer::FileIOXdrSerializer()'],
 122 ········['../classgmx_1_1FileIOXdrSerializer.xhtml',·1,·'gmx::FileIOXdrSerializer']
123 ····]],123 ····]],
124 ····['fileioxdrserializer_2ecpp_79',·['fileioxdrserializer.cpp',·['../fileioxdrserializer_8cpp.xhtml',·1,·'']]],124 ····['fileioxdrserializer_2ecpp_79',·['fileioxdrserializer.cpp',·['../fileioxdrserializer_8cpp.xhtml',·1,·'']]],
125 ····['filemanager_80',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]],125 ····['filemanager_80',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]],
126 ····['filemanager_5f_81',·['filemanager_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a6739c595dc4466b69220fdf1dfbe3d71',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::fileManager_'],126 ····['filemanager_5f_81',·['filemanager_',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_'],
127 ········['../classgmx_1_1test_1_1MdrunTestFixture.xhtml#a2141d1eeae99b891fdd4aabc9de3dccb',·1,·'gmx::test::MdrunTestFixture::fileManager_'],127 ········['../classgmx_1_1test_1_1MdrunTestFixture.xhtml#a2141d1eeae99b891fdd4aabc9de3dccb',·1,·'gmx::test::MdrunTestFixture::fileManager_'],
128 ········['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_']128 ········['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a6739c595dc4466b69220fdf1dfbe3d71',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::fileManager_']
129 ····]],129 ····]],
130 ····['filematcherpointer_82',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]],130 ····['filematcherpointer_82',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]],
131 ····['filematchers_2ecpp_83',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]],131 ····['filematchers_2ecpp_83',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]],
132 ····['filematchers_2eh_84',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]],132 ····['filematchers_2eh_84',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]],
133 ····['filemd5_2ecpp_85',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]],133 ····['filemd5_2ecpp_85',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]],
134 ····['filename_86',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],134 ····['filename_86',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]],
135 ····['filenamelist_87',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],135 ····['filenamelist_87',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]],
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1273 ····['gmx_5fkernel_5ftiming_5fdata_5ft_912',·['gmx_kernel_timing_data_t',·['../structgmx__kernel__timing__data__t.xhtml',·1,·'']]],1273 ····['gmx_5fkernel_5ftiming_5fdata_5ft_912',·['gmx_kernel_timing_data_t',·['../structgmx__kernel__timing__data__t.xhtml',·1,·'']]],
1274 ····['gmx_5flapack_2eh_913',·['gmx_lapack.h',·['../gmx__lapack_8h.xhtml',·1,·'']]],1274 ····['gmx_5flapack_2eh_913',·['gmx_lapack.h',·['../gmx__lapack_8h.xhtml',·1,·'']]],
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 1284 ····['gmx_5fmdrun_921',·['gmx_mdrun',·['../namespacegmx.xhtml#a4a29b533acb47eb890641baab3fc0468',·1,·'gmx::gmx_mdrun(int·argc,·char·*argv[])'],
1284 ····['gmx_5fmdrun_921',·['gmx_mdrun',·['../namespacegmx.xhtml#ac0404a0a89f646b81b966ace5810944d',·1,·'gmx::gmx_mdrun(MPI_Comm·communicator,·const·gmx_hw_info_t·&amp;hwinfo,·int·argc,·char·*argv[])'],1285 ········['../namespacegmx.xhtml#ac0404a0a89f646b81b966ace5810944d',·1,·'gmx::gmx_mdrun(MPI_Comm·communicator,·const·gmx_hw_info_t·&amp;hwinfo,·int·argc,·char·*argv[])']
1285 ········['../namespacegmx.xhtml#a4a29b533acb47eb890641baab3fc0468',·1,·'gmx::gmx_mdrun(int·argc,·char·*argv[])'] 
1286 ····]],1286 ····]],
1287 ····['gmx_5fmindist_2ecpp_922',·['gmx_mindist.cpp',·['../tests_2gmx__mindist_8cpp.xhtml',·1,·'']]],1287 ····['gmx_5fmindist_2ecpp_922',·['gmx_mindist.cpp',·['../tests_2gmx__mindist_8cpp.xhtml',·1,·'']]],
1288 ····['gmx_5fmolblock_5ft_923',·['gmx_molblock_t',·['../structgmx__molblock__t.xhtml',·1,·'']]],1288 ····['gmx_5fmolblock_5ft_923',·['gmx_molblock_t',·['../structgmx__molblock__t.xhtml',·1,·'']]],
1289 ····['gmx_5fmoltype_5ft_924',·['gmx_moltype_t',·['../structgmx__moltype__t.xhtml',·1,·'gmx_moltype_t'],1289 ····['gmx_5fmoltype_5ft_924',·['gmx_moltype_t',·['../structgmx__moltype__t.xhtml',·1,·'gmx_moltype_t'],
1290 ········['../structgmx__moltype__t.xhtml#a49862bbe7823fc1fc73c37a0f3619fef',·1,·'gmx_moltype_t::gmx_moltype_t()']1290 ········['../structgmx__moltype__t.xhtml#a49862bbe7823fc1fc73c37a0f3619fef',·1,·'gmx_moltype_t::gmx_moltype_t()']
1291 ····]],1291 ····]],
1292 ····['gmx_5fmpi_5finitialized_925',·['gmx_mpi_initialized',·['../basenetwork_8h.xhtml#a0be63511ea9391dd2049b56d43a9e6a1',·1,·'basenetwork.cpp']]],1292 ····['gmx_5fmpi_5finitialized_925',·['gmx_mpi_initialized',·['../basenetwork_8h.xhtml#a0be63511ea9391dd2049b56d43a9e6a1',·1,·'basenetwork.cpp']]],
Offset 1326, 37 lines modifiedOffset 1326, 37 lines modified
1326 ········['../pme_8h.xhtml#af28e0ce531d0251546501a7f192f25f2',·1,·'gmx_pme_calc_energy(gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx::ArrayRef&lt;·const·real·&gt;·q):&#160;pme.cpp']1326 ········['../pme_8h.xhtml#af28e0ce531d0251546501a7f192f25f2',·1,·'gmx_pme_calc_energy(gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx::ArrayRef&lt;·const·real·&gt;·q):&#160;pme.cpp']
1327 ····]],1327 ····]],
1328 ····['gmx_5fpme_5fcheck_5frestrictions_945',·['gmx_pme_check_restrictions',·['../pme_8cpp.xhtml#a5c4fecfcddcabc83d73c85042c935f96',·1,·'gmx_pme_check_restrictions(int·pme_order,·int·nkx,·int·nky,·int·nkz,·int·numPmeDomainsAlongX,·int·numPmeDomainsAlongY,·int·extendedHaloRegion,·bool·useGpuPme,·bool·useThreads,·bool·errorsAreFatal):&#160;pme.cpp'],1328 ····['gmx_5fpme_5fcheck_5frestrictions_945',·['gmx_pme_check_restrictions',·['../pme_8cpp.xhtml#a5c4fecfcddcabc83d73c85042c935f96',·1,·'gmx_pme_check_restrictions(int·pme_order,·int·nkx,·int·nky,·int·nkz,·int·numPmeDomainsAlongX,·int·numPmeDomainsAlongY,·int·extendedHaloRegion,·bool·useGpuPme,·bool·useThreads,·bool·errorsAreFatal):&#160;pme.cpp'],
1329 ········['../pme_8h.xhtml#a5c4fecfcddcabc83d73c85042c935f96',·1,·'gmx_pme_check_restrictions(int·pme_order,·int·nkx,·int·nky,·int·nkz,·int·numPmeDomainsAlongX,·int·numPmeDomainsAlongY,·int·extendedHaloRegion,·bool·useGpuPme,·bool·useThreads,·bool·errorsAreFatal):&#160;pme.cpp']1329 ········['../pme_8h.xhtml#a5c4fecfcddcabc83d73c85042c935f96',·1,·'gmx_pme_check_restrictions(int·pme_order,·int·nkx,·int·nky,·int·nkz,·int·numPmeDomainsAlongX,·int·numPmeDomainsAlongY,·int·extendedHaloRegion,·bool·useGpuPme,·bool·useThreads,·bool·errorsAreFatal):&#160;pme.cpp']
1330 ····]],1330 ····]],
1331 ····['gmx_5fpme_5fcomm_5fn_5fbox_5ft_946',·['gmx_pme_comm_n_box_t',·['../structgmx__pme__comm__n__box__t.xhtml',·1,·'']]],1331 ····['gmx_5fpme_5fcomm_5fn_5fbox_5ft_946',·['gmx_pme_comm_n_box_t',·['../structgmx__pme__comm__n__box__t.xhtml',·1,·'']]],
1332 ····['gmx_5fpme_5fcomm_5fvir_5fene_5ft_947',·['gmx_pme_comm_vir_ene_t',·['../structgmx__pme__comm__vir__ene__t.xhtml',·1,·'']]],1332 ····['gmx_5fpme_5fcomm_5fvir_5fene_5ft_947',·['gmx_pme_comm_vir_ene_t',·['../structgmx__pme__comm__vir__ene__t.xhtml',·1,·'']]],
1333 ····['gmx_5fpme_5fdestroy_948',·['gmx_pme_destroy',·['../pme_8cpp.xhtml#ac5a75a2d477885fcb0260908f6e7b2f2',·1,·'gmx_pme_destroy(gmx_pme_t·*pme):&#160;pme.cpp'], 
1334 ········['../pme_8cpp.xhtml#afb9db2681fc072d6b4176febca9831c6',·1,·'gmx_pme_destroy(gmx_pme_t·*pme,·bool·destroyGpuData):&#160;pme.cpp'],1333 ····['gmx_5fpme_5fdestroy_948',·['gmx_pme_destroy',·['../pme_8h.xhtml#afb9db2681fc072d6b4176febca9831c6',·1,·'gmx_pme_destroy(gmx_pme_t·*pme,·bool·destroyGpuData):&#160;pme.cpp'],
1335 ········['../pme_8h.xhtml#ac5a75a2d477885fcb0260908f6e7b2f2',·1,·'gmx_pme_destroy(gmx_pme_t·*pme):&#160;pme.cpp'],1334 ········['../pme_8h.xhtml#ac5a75a2d477885fcb0260908f6e7b2f2',·1,·'gmx_pme_destroy(gmx_pme_t·*pme):&#160;pme.cpp'],
1336 ········['../pme_8h.xhtml#afb9db2681fc072d6b4176febca9831c6',·1,·'gmx_pme_destroy(gmx_pme_t·*pme,·bool·destroyGpuData):&#160;pme.cpp']1335 ········['../pme_8cpp.xhtml#afb9db2681fc072d6b4176febca9831c6',·1,·'gmx_pme_destroy(gmx_pme_t·*pme,·bool·destroyGpuData):&#160;pme.cpp'],
 1336 ········['../pme_8cpp.xhtml#ac5a75a2d477885fcb0260908f6e7b2f2',·1,·'gmx_pme_destroy(gmx_pme_t·*pme):&#160;pme.cpp']
1337 ····]],1337 ····]],
1338 ····['gmx_5fpme_5fdo_949',·['gmx_pme_do',·['../pme_8cpp.xhtml#ae9d5a3c227bbe220bd732be51ec92d9b',·1,·'gmx_pme_do(struct·gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·coordinates,·gmx::ArrayRef&lt;·gmx::RVec·&gt;·forces,·gmx::ArrayRef&lt;·const·real·&gt;·chargeA,·gmx::ArrayRef&lt;·const·real·&gt;·chargeB,·gmx::ArrayRef&lt;·const·real·&gt;·c6A,·gmx::ArrayRef&lt;·const·real·&gt;·c6B,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaA,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaB,·const·matrix·box,·const·t_commrec·*cr,·int·maxshift_x,·int·maxshift_y,·t_nrnb·*nrnb,·gmx_wallcycle·*wcycle,·matrix·vir_q,·matrix·vir_lj,·real·*energy_q,·real·*energy_lj,·real·lambda_q,·real·lambda_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·const·gmx::StepWorkload·&amp;stepWork):&#160;pme.cpp'],1338 ····['gmx_5fpme_5fdo_949',·['gmx_pme_do',·['../pme_8h.xhtml#ae9d5a3c227bbe220bd732be51ec92d9b',·1,·'gmx_pme_do(struct·gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·coordinates,·gmx::ArrayRef&lt;·gmx::RVec·&gt;·forces,·gmx::ArrayRef&lt;·const·real·&gt;·chargeA,·gmx::ArrayRef&lt;·const·real·&gt;·chargeB,·gmx::ArrayRef&lt;·const·real·&gt;·c6A,·gmx::ArrayRef&lt;·const·real·&gt;·c6B,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaA,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaB,·const·matrix·box,·const·t_commrec·*cr,·int·maxshift_x,·int·maxshift_y,·t_nrnb·*nrnb,·gmx_wallcycle·*wcycle,·matrix·vir_q,·matrix·vir_lj,·real·*energy_q,·real·*energy_lj,·real·lambda_q,·real·lambda_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·const·gmx::StepWorkload·&amp;stepWork):&#160;pme.cpp'],
1339 ········['../pme_8h.xhtml#ae9d5a3c227bbe220bd732be51ec92d9b',·1,·'gmx_pme_do(struct·gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·coordinates,·gmx::ArrayRef&lt;·gmx::RVec·&gt;·forces,·gmx::ArrayRef&lt;·const·real·&gt;·chargeA,·gmx::ArrayRef&lt;·const·real·&gt;·chargeB,·gmx::ArrayRef&lt;·const·real·&gt;·c6A,·gmx::ArrayRef&lt;·const·real·&gt;·c6B,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaA,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaB,·const·matrix·box,·const·t_commrec·*cr,·int·maxshift_x,·int·maxshift_y,·t_nrnb·*nrnb,·gmx_wallcycle·*wcycle,·matrix·vir_q,·matrix·vir_lj,·real·*energy_q,·real·*energy_lj,·real·lambda_q,·real·lambda_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·const·gmx::StepWorkload·&amp;stepWork):&#160;pme.cpp']1339 ········['../pme_8cpp.xhtml#ae9d5a3c227bbe220bd732be51ec92d9b',·1,·'gmx_pme_do(struct·gmx_pme_t·*pme,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·coordinates,·gmx::ArrayRef&lt;·gmx::RVec·&gt;·forces,·gmx::ArrayRef&lt;·const·real·&gt;·chargeA,·gmx::ArrayRef&lt;·const·real·&gt;·chargeB,·gmx::ArrayRef&lt;·const·real·&gt;·c6A,·gmx::ArrayRef&lt;·const·real·&gt;·c6B,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaA,·gmx::ArrayRef&lt;·const·real·&gt;·sigmaB,·const·matrix·box,·const·t_commrec·*cr,·int·maxshift_x,·int·maxshift_y,·t_nrnb·*nrnb,·gmx_wallcycle·*wcycle,·matrix·vir_q,·matrix·vir_lj,·real·*energy_q,·real·*energy_lj,·real·lambda_q,·real·lambda_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·const·gmx::StepWorkload·&amp;stepWork):&#160;pme.cpp']
1340 ····]],1340 ····]],
1341 ····['gmx_5fpme_5fgrid_5fmatches_950',·['gmx_pme_grid_matches',·['../pme_8h.xhtml#a90e8466d51fc7f91409cce40287f1d14',·1,·'gmx_pme_grid_matches(const·gmx_pme_t·&amp;pme,·const·ivec·grid_size):&#160;pme.cpp'],1341 ····['gmx_5fpme_5fgrid_5fmatches_950',·['gmx_pme_grid_matches',·['../pme_8h.xhtml#a90e8466d51fc7f91409cce40287f1d14',·1,·'gmx_pme_grid_matches(const·gmx_pme_t·&amp;pme,·const·ivec·grid_size):&#160;pme.cpp'],
1342 ········['../pme_8cpp.xhtml#a90e8466d51fc7f91409cce40287f1d14',·1,·'gmx_pme_grid_matches(const·gmx_pme_t·&amp;pme,·const·ivec·grid_size):&#160;pme.cpp']1342 ········['../pme_8cpp.xhtml#a90e8466d51fc7f91409cce40287f1d14',·1,·'gmx_pme_grid_matches(const·gmx_pme_t·&amp;pme,·const·ivec·grid_size):&#160;pme.cpp']
1343 ····]],1343 ····]],
1344 ····['gmx_5fpme_5finit_951',·['gmx_pme_init',·['../pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf',·1,·'gmx_pme_init(const·t_commrec·*cr,·const·NumPmeDomains·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·PmeGpu·*pmeGpu,·const·DeviceContext·*deviceContext,·const·DeviceStream·*deviceStream,·const·PmeGpuProgram·*pmeGpuProgram,·const·gmx::MDLogger·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr):&#160;pme.cpp'],1344 ····['gmx_5fpme_5finit_951',·['gmx_pme_init',·['../pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf',·1,·'gmx_pme_init(const·t_commrec·*cr,·const·NumPmeDomains·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·PmeGpu·*pmeGpu,·const·DeviceContext·*deviceContext,·const·DeviceStream·*deviceStream,·const·PmeGpuProgram·*pmeGpuProgram,·const·gmx::MDLogger·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr):&#160;pme.cpp'],
1345 ········['../pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf',·1,·'gmx_pme_init(const·t_commrec·*cr,·const·NumPmeDomains·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·PmeGpu·*pmeGpu,·const·DeviceContext·*deviceContext,·const·DeviceStream·*deviceStream,·const·PmeGpuProgram·*pmeGpuProgram,·const·gmx::MDLogger·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr):&#160;pme.cpp']1345 ········['../pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf',·1,·'gmx_pme_init(const·t_commrec·*cr,·const·NumPmeDomains·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·PmeGpu·*pmeGpu,·const·DeviceContext·*deviceContext,·const·DeviceStream·*deviceStream,·const·PmeGpuProgram·*pmeGpuProgram,·const·gmx::MDLogger·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr):&#160;pme.cpp']
1346 ····]],1346 ····]],
1347 ····['gmx_5fpme_5fpp_952',·['gmx_pme_pp',·['../structgmx__pme__pp.xhtml',·1,·'']]],1347 ····['gmx_5fpme_5fpp_952',·['gmx_pme_pp',·['../structgmx__pme__pp.xhtml',·1,·'']]],
1348 ····['gmx_5fpme_5freceive_5ff_953',·['gmx_pme_receive_f',·['../pme__pp_8h.xhtml#ac80dc53aeed084dcf80cf5a3581df28b',·1,·'gmx_pme_receive_f(gmx::PmePpCommGpu·*pmePpCommGpu,·const·t_commrec·*cr,·gmx::ForceWithVirial·*forceWithVirial,·real·*energy_q,·real·*energy_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·bool·useGpuPmePpComms,·bool·receivePmeForceToGpu,·float·*pme_cycles):&#160;pme_pp.cpp'],1348 ····['gmx_5fpme_5freceive_5ff_953',·['gmx_pme_receive_f',·['../pme__pp_8cpp.xhtml#ac80dc53aeed084dcf80cf5a3581df28b',·1,·'gmx_pme_receive_f(gmx::PmePpCommGpu·*pmePpCommGpu,·const·t_commrec·*cr,·gmx::ForceWithVirial·*forceWithVirial,·real·*energy_q,·real·*energy_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·bool·useGpuPmePpComms,·bool·receivePmeForceToGpu,·float·*pme_cycles):&#160;pme_pp.cpp'],
1349 ········['../pme__pp_8cpp.xhtml#ac80dc53aeed084dcf80cf5a3581df28b',·1,·'gmx_pme_receive_f(gmx::PmePpCommGpu·*pmePpCommGpu,·const·t_commrec·*cr,·gmx::ForceWithVirial·*forceWithVirial,·real·*energy_q,·real·*energy_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·bool·useGpuPmePpComms,·bool·receivePmeForceToGpu,·float·*pme_cycles):&#160;pme_pp.cpp']1349 ········['../pme__pp_8h.xhtml#ac80dc53aeed084dcf80cf5a3581df28b',·1,·'gmx_pme_receive_f(gmx::PmePpCommGpu·*pmePpCommGpu,·const·t_commrec·*cr,·gmx::ForceWithVirial·*forceWithVirial,·real·*energy_q,·real·*energy_lj,·real·*dvdlambda_q,·real·*dvdlambda_lj,·bool·useGpuPmePpComms,·bool·receivePmeForceToGpu,·float·*pme_cycles):&#160;pme_pp.cpp']
1350 ····]],1350 ····]],
 1351 ····['gmx_5fpme_5freinit_954',·['gmx_pme_reinit',·['../pme_8h.xhtml#addb051f62c492eb3a5720c8cbf4332c6',·1,·'gmx_pme_reinit(gmx_pme_t·**pmedata,·const·t_commrec·*cr,·gmx_pme_t·*pme_src,·const·t_inputrec·*ir,·const·ivec·grid_size,·real·ewaldcoeff_q,·real·ewaldcoeff_lj):&#160;pme.cpp'],
1351 ····['gmx_5fpme_5freinit_954',·['gmx_pme_reinit',·['../pme_8cpp.xhtml#ab1d5c3f2e6e75de3f38107c0acd92c6d',·1,·'gmx_pme_reinit(struct·gmx_pme_t·**pmedata,·const·t_commrec·*cr,·struct·gmx_pme_t·*pme_src,·const·t_inputrec·*ir,·const·ivec·grid_size,·real·ewaldcoeff[·...·truncated·by·diffoscope;·len:·40,·SHA:·f10a97fabbc077cb809eb48d591ea7a81b5a3e51536fde95135f923050670520·...·]1352 ········['../pme_8cpp.xhtml#ab1d5c3f2e6e75de3f38107c0acd92c6d',·1,·'gmx_pme_reinit(struct·gmx_pme_t·**pmedata,·const·t_commrec·*cr,·struct·gmx_pme_t·*pme_src,·const·t_inputrec·*ir,·const·ivec·grid_size,·real·ewaldcoeff_q,·real·ewaldcoeff_lj):&#160;pme.cpp']
1352 ········['../pme_8h.xhtml#addb051f62c492eb3a5720c8cbf4332c6',·1,·'gmx_pme_reinit(gmx_pme_t·**pmedata,·const·t_commrec·*cr,·gmx_pme_t·*pme_src,·const·t_inputrec·*ir,·const·ivec·grid_size,·real·ewaldcoeff_q,·real·ewaldcoeff_lj):&#160;pme.cpp'] 
1353 ····]],1353 ····]],
1354 ····['gmx_5fpme_5freinit_5fatoms_955',·['gmx_pme_reinit_atoms',·['../pme_8cpp.xhtml#a1502bc293ce8fb854adf4648a1d2d4c7',·1,·'gmx_pme_reinit_atoms(gmx_pme_t·*pme,·const·int·numAtoms,·gmx::ArrayRef&lt;·const·real·&gt;·chargesA,·gmx::ArrayRef&lt;·const·real·&gt;·chargesB):&#160;pme.cpp'],1354 ····['gmx_5fpme_5freinit_5fatoms_955',·['gmx_pme_reinit_atoms',·['../pme_8h.xhtml#a05afbf020b612d12ae1007b79a737edb',·1,·'gmx_pme_reinit_atoms(gmx_pme_t·*pme,·int·numAtoms,·gmx::ArrayRef&lt;·const·real·&gt;·chargesA,·gmx::ArrayRef&lt;·const·real·&gt;·chargesB):&#160;pme.cpp'],
1355 ········['../pme_8h.xhtml#a05afbf020b612d12ae1007b79a737edb',·1,·'gmx_pme_reinit_atoms(gmx_pme_t·*pme,·int·numAtoms,·gmx::ArrayRef&lt;·const·real·&gt;·chargesA,·gmx::ArrayRef&lt;·const·real·&gt;·chargesB):&#160;pme.cpp']1355 ········['../pme_8cpp.xhtml#a1502bc293ce8fb854adf4648a1d2d4c7',·1,·'gmx_pme_reinit_atoms(gmx_pme_t·*pme,·const·int·numAtoms,·gmx::ArrayRef&lt;·const·real·&gt;·chargesA,·gmx::ArrayRef&lt;·const·real·&gt;·chargesB):&#160;pme.cpp']
1356 ····]],1356 ····]],
1357 ····['gmx_5fpme_5fsend_5fcoeffs_5fcoords_956',·['gmx_pme_send_coeffs_coords',·['../pme__pp_8cpp.xhtml#a810bd87c033d0b7544a243693e1b53d2',·1,·'pme_pp.cpp']]],1357 ····['gmx_5fpme_5fsend_5fcoeffs_5fcoords_956',·['gmx_pme_send_coeffs_coords',·['../pme__pp_8cpp.xhtml#a810bd87c033d0b7544a243693e1b53d2',·1,·'pme_pp.cpp']]],
1358 ····['gmx_5fpme_5fsend_5fcoeffs_5fcoords_5fwait_957',·['gmx_pme_send_coeffs_coords_wait',·['../pme__pp_8cpp.xhtml#a8b23b61fb70dc499495370bccce186fe',·1,·'pme_pp.cpp']]],1358 ····['gmx_5fpme_5fsend_5fcoeffs_5fcoords_5fwait_957',·['gmx_pme_send_coeffs_coords_wait',·['../pme__pp_8cpp.xhtml#a8b23b61fb70dc499495370bccce186fe',·1,·'pme_pp.cpp']]],
1359 ····['gmx_5fpme_5fsend_5fcoordinates_958',·['gmx_pme_send_coordinates',·['../pme__pp_8cpp.xhtml#ab646bb77e2d8189a87259663e98a3aac',·1,·'gmx_pme_send_coordinates(t_forcerec·*fr,·const·t_commrec·*cr,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·real·lambda_q,·real·lambda_lj,·bool·computeEnergyAndVirial,·int64_t·step,·bool·useGpuPmePpComms,·bool·receiveCoordinateAddressFromPme,·bool·sendCoordinatesFromGpu,·bool·receiveForcesToGpu,·GpuEventSynchronizer·*coordinatesReadyOnDeviceEvent,·bool·useMdGpuGraph,·gmx_wallcycle·*wcycle):&#160;pme_pp.cpp'],1359 ····['gmx_5fpme_5fsend_5fcoordinates_958',·['gmx_pme_send_coordinates',·['../pme__pp_8cpp.xhtml#ab646bb77e2d8189a87259663e98a3aac',·1,·'gmx_pme_send_coordinates(t_forcerec·*fr,·const·t_commrec·*cr,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·real·lambda_q,·real·lambda_lj,·bool·computeEnergyAndVirial,·int64_t·step,·bool·useGpuPmePpComms,·bool·receiveCoordinateAddressFromPme,·bool·sendCoordinatesFromGpu,·bool·receiveForcesToGpu,·GpuEventSynchronizer·*coordinatesReadyOnDeviceEvent,·bool·useMdGpuGraph,·gmx_wallcycle·*wcycle):&#160;pme_pp.cpp'],
1360 ········['../pme__pp_8h.xhtml#a56a70e5ba4d08896460c86b77914dfb3',·1,·'gmx_pme_send_coordinates(t_forcerec·*fr,·const·t_commrec·*cr,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·real·lambda_q,·real·lambda_lj,·bool·computeEnergyAndVirial,·int64_t·step,·bool·useGpuPmePpComms,·bool·reinitGpuPmePpComms,·bool·sendCoordinatesFromGpu,·bool·receiveForcesToGpu,·GpuEventSynchronizer·*coordinatesReadyOnDeviceEvent,·bool·useMdGpuGraph,·gmx_wallcycle·*wcycle):&#160;pme_pp.cpp']1360 ········['../pme__pp_8h.xhtml#a56a70e5ba4d08896460c86b77914dfb3',·1,·'gmx_pme_send_coordinates(t_forcerec·*fr,·const·t_commrec·*cr,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·real·lambda_q,·real·lambda_lj,·bool·computeEnergyAndVirial,·int64_t·step,·bool·useGpuPmePpComms,·bool·reinitGpuPmePpComms,·bool·sendCoordinatesFromGpu,·bool·receiveForcesToGpu,·GpuEventSynchronizer·*coordinatesReadyOnDeviceEvent,·bool·useMdGpuGraph,·gmx_wallcycle·*wcycle):&#160;pme_pp.cpp']
1361 ····]],1361 ····]],
1362 ····['gmx_5fpme_5fsend_5ffinish_959',·['gmx_pme_send_finish',·['../pme__pp_8cpp.xhtml#a4daff17a719886efa0309286a8278bcc',·1,·'gmx_pme_send_finish(const·t_commrec·*cr):&#160;pme_pp.cpp'],1362 ····['gmx_5fpme_5fsend_5ffinish_959',·['gmx_pme_send_finish',·['../pme__pp_8cpp.xhtml#a4daff17a719886efa0309286a8278bcc',·1,·'gmx_pme_send_finish(const·t_commrec·*cr):&#160;pme_pp.cpp'],
Offset 1544, 16 lines modifiedOffset 1544, 16 lines modified
1544 ····['gpp_5fatomtype_2eh_1117',·['gpp_atomtype.h',·['../gpp__atomtype_8h.xhtml',·1,·'']]],1544 ····['gpp_5fatomtype_2eh_1117',·['gpp_atomtype.h',·['../gpp__atomtype_8h.xhtml',·1,·'']]],
1545 ····['gpp_5fbond_5fatomtype_2ecpp_1118',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],1545 ····['gpp_5fbond_5fatomtype_2ecpp_1118',·['gpp_bond_atomtype.cpp',·['../tests_2gpp__bond__atomtype_8cpp.xhtml',·1,·'']]],
1546 ····['gpp_5fbond_5fatomtype_2eh_1119',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],1546 ····['gpp_5fbond_5fatomtype_2eh_1119',·['gpp_bond_atomtype.h',·['../gpp__bond__atomtype_8h.xhtml',·1,·'']]],
1547 ····['gpu_1120',·['gpu',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddba3432ca64f06615abf07ab44c10cada38',·1,·'gmx::Gpu'],1547 ····['gpu_1120',·['gpu',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddba3432ca64f06615abf07ab44c10cada38',·1,·'gmx::Gpu'],
1548 ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a52f9ec21735243ad9917cda3ca077d32',·1,·'GPU:&#160;pme.h'],1548 ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a52f9ec21735243ad9917cda3ca077d32',·1,·'GPU:&#160;pme.h'],
1549 ········['../namespacegmx_1_1test.xhtml#a12502ff6638f23aeff85ad081f6a0a1ca52f9ec21735243ad9917cda3ca077d32',·1,·'gmx::test::GPU']1549 ········['../namespacegmx_1_1test.xhtml#a12502ff6638f23aeff85ad081f6a0a1ca52f9ec21735243ad9917cda3ca077d32',·1,·'gmx::test::GPU']
1550 ····]],1550 ····]],
 1551 ····['gpu3dfft_1121',·['gpu3dfft',·['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft'],
1551 ····['gpu3dfft_1121',·['gpu3dfft',·['../classgmx_1_1Gpu3dFft.xhtml#a601de47c00396f7f8bb2df3fb91a65f0',·1,·'gmx::Gpu3dFft::Gpu3dFft()'],1552 ········['../classgmx_1_1Gpu3dFft.xhtml#a601de47c00396f7f8bb2df3fb91a65f0',·1,·'gmx::Gpu3dFft::Gpu3dFft()']
1552 ········['../classgmx_1_1Gpu3dFft.xhtml',·1,·'gmx::Gpu3dFft'] 
1553 ····]],1553 ····]],
1554 ····['gpu_5f3dfft_2ecpp_1122',·['gpu_3dfft.cpp',·['../gpu__3dfft_8cpp.xhtml',·1,·'']]],1554 ····['gpu_5f3dfft_2ecpp_1122',·['gpu_3dfft.cpp',·['../gpu__3dfft_8cpp.xhtml',·1,·'']]],
1555 ····['gpu_5f3dfft_2eh_1123',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],1555 ····['gpu_5f3dfft_2eh_1123',·['gpu_3dfft.h',·['../gpu__3dfft_8h.xhtml',·1,·'']]],
1556 ····['gpu_5f3dfft_5fcufft_2eh_1124',·['gpu_3dfft_cufft.h',·['../gpu__3dfft__cufft_8h.xhtml',·1,·'']]],1556 ····['gpu_5f3dfft_5fcufft_2eh_1124',·['gpu_3dfft_cufft.h',·['../gpu__3dfft__cufft_8h.xhtml',·1,·'']]],
1557 ····['gpu_5f3dfft_5fcufftmp_2ecpp_1125',·['gpu_3dfft_cufftmp.cpp',·['../gpu__3dfft__cufftmp_8cpp.xhtml',·1,·'']]],1557 ····['gpu_5f3dfft_5fcufftmp_2ecpp_1125',·['gpu_3dfft_cufftmp.cpp',·['../gpu__3dfft__cufftmp_8cpp.xhtml',·1,·'']]],
1558 ····['gpu_5f3dfft_5fcufftmp_2eh_1126',·['gpu_3dfft_cufftmp.h',·['../gpu__3dfft__cufftmp_8h.xhtml',·1,·'']]],1558 ····['gpu_5f3dfft_5fcufftmp_2eh_1126',·['gpu_3dfft_cufftmp.h',·['../gpu__3dfft__cufftmp_8h.xhtml',·1,·'']]],
1559 ····['gpu_5f3dfft_5fheffte_2ecpp_1127',·['gpu_3dfft_heffte.cpp',·['../gpu__3dfft__heffte_8cpp.xhtml',·1,·'']]],1559 ····['gpu_5f3dfft_5fheffte_2ecpp_1127',·['gpu_3dfft_heffte.cpp',·['../gpu__3dfft__heffte_8cpp.xhtml',·1,·'']]],
Offset 1578, 37 lines modifiedOffset 1578, 37 lines modified
1578 ····['gpu_5f3dfft_5fsycl_5frocfft_2eh_1146',·['gpu_3dfft_sycl_rocfft.h',·['../gpu__3dfft__sycl__rocfft_8h.xhtml',·1,·'']]],1578 ····['gpu_5f3dfft_5fsycl_5frocfft_2eh_1146',·['gpu_3dfft_sycl_rocfft.h',·['../gpu__3dfft__sycl__rocfft_8h.xhtml',·1,·'']]],
1579 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1147',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],1579 ····['gpu_5f3dfft_5fsycl_5fvkfft_2ecpp_1147',·['gpu_3dfft_sycl_vkfft.cpp',·['../gpu__3dfft__sycl__vkfft_8cpp.xhtml',·1,·'']]],
1580 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1148',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],1580 ····['gpu_5f3dfft_5fsycl_5fvkfft_2eh_1148',·['gpu_3dfft_sycl_vkfft.h',·['../gpu__3dfft__sycl__vkfft_8h.xhtml',·1,·'']]],
1581 ····['gpu_5faccumulate_5ftimings_1149',·['gpu_accumulate_timings',·['../namespacegmx.xhtml#ac59e98cb9d0f58b6a86541d252a1f6db',·1,·'gmx']]],1581 ····['gpu_5faccumulate_5ftimings_1149',·['gpu_accumulate_timings',·['../namespacegmx.xhtml#ac59e98cb9d0f58b6a86541d252a1f6db',·1,·'gmx']]],
1582 ····['gpu_5fclear_5foutputs_1150',·['gpu_clear_outputs',·['../namespacegmx.xhtml#a7ce8d46cf4d31f5615aafa09502b9885',·1,·'gmx']]],1582 ····['gpu_5fclear_5foutputs_1150',·['gpu_clear_outputs',·['../namespacegmx.xhtml#a7ce8d46cf4d31f5615aafa09502b9885',·1,·'gmx']]],
1583 ····['gpu_5fcommon_2eh_1151',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],1583 ····['gpu_5fcommon_2eh_1151',·['gpu_common.h',·['../gpu__common_8h.xhtml',·1,·'']]],
1584 ····['gpu_5fcommon_5futils_2eh_1152',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],1584 ····['gpu_5fcommon_5futils_2eh_1152',·['gpu_common_utils.h',·['../gpu__common__utils_8h.xhtml',·1,·'']]],
1585 ····['gpu_5fcopy_5fxq_5fto_5fgpu_1153',·['gpu_copy_xq_to_gpu',·['../namespacegmx.xhtml#a81682a6299331fb76b415a8fd0d6bb4c',·1,·'gmx::gpu_copy_xq_to_gpu(NbnxmGpu·*nb,·const·nbnxn_atomdata_t·*nbatom,·const·AtomLocality·atomLocality)'], 
1586 ········['../namespacegmx.xhtml#ab38729f4217d6e32d04e32b877e8c3c6',·1,·'gmx::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·AtomLocality·gmx_unused·aloc)']1585 ····['gpu_5fcopy_5fxq_5fto_5fgpu_1153',·['gpu_copy_xq_to_gpu',·['../namespacegmx.xhtml#ab38729f4217d6e32d04e32b877e8c3c6',·1,·'gmx::gpu_copy_xq_to_gpu(NbnxmGpu·gmx_unused·*nb,·const·struct·nbnxn_atomdata_t·gmx_unused·*nbdata,·AtomLocality·gmx_unused·aloc)'],
 1586 ········['../namespacegmx.xhtml#a81682a6299331fb76b415a8fd0d6bb4c',·1,·'gmx::gpu_copy_xq_to_gpu(NbnxmGpu·*nb,·const·nbnxn_atomdata_t·*nbatom,·const·AtomLocality·atomLocality)']
1587 ····]],1587 ····]],
1588 ····['gpu_5fdata_5fmgmt_2eh_1154',·['gpu_data_mgmt.h',·['../gpu__data__mgmt_8h.xhtml',·1,·'']]],1588 ····['gpu_5fdata_5fmgmt_2eh_1154',·['gpu_data_mgmt.h',·['../gpu__data__mgmt_8h.xhtml',·1,·'']]],
1589 ····['gpu_5ffree_1155',·['gpu_free',·['../namespacegmx.xhtml#af96be16f42d67a9ddb29abe7810a48ba',·1,·'gmx::gpu_free(NbnxmGpu·gmx_unused·*nb)'],1589 ····['gpu_5ffree_1155',·['gpu_free',·['../namespacegmx.xhtml#af96be16f42d67a9ddb29abe7810a48ba',·1,·'gmx::gpu_free(NbnxmGpu·gmx_unused·*nb)'],
1590 ········['../namespacegmx.xhtml#ac31ed3e4c02494575fe3d85683ed95a4',·1,·'gmx::gpu_free(NbnxmGpu·*nb)']1590 ········['../namespacegmx.xhtml#ac31ed3e4c02494575fe3d85683ed95a4',·1,·'gmx::gpu_free(NbnxmGpu·*nb)']
1591 ····]],1591 ····]],
1592 ····['gpu_5ffree_5fplatform_5fspecific_1156',·['gpu_free_platform_specific',·['../namespacegmx.xhtml#a0c9945e49d8977c64f9514ab048fffb7',·1,·'gmx']]],1592 ····['gpu_5ffree_5fplatform_5fspecific_1156',·['gpu_free_platform_specific',·['../namespacegmx.xhtml#a0c9945e49d8977c64f9514ab048fffb7',·1,·'gmx']]],
1593 ····['gpu_5fget_5ff_1157',·['gpu_get_f',·['../namespacegmx.xhtml#a3f4aa560b48378f9e8ab275ff326b4da',·1,·'gmx']]],1593 ····['gpu_5fget_5ff_1157',·['gpu_get_f',·['../namespacegmx.xhtml#a3f4aa560b48378f9e8ab275ff326b4da',·1,·'gmx']]],
1594 ····['gpu_5fget_5ftimings_1158',·['gpu_get_timings',·['../namespacegmx.xhtml#adc6c6fd8f6ed6f95bf9137379d020b76',·1,·'gmx::gpu_get_timings(NbnxmGpu·*nb)'], 
1595 ········['../namespacegmx.xhtml#ab7a59287bd253fd4feccbc55b49dd6c7',·1,·'gmx::gpu_get_timings(NbnxmGpu·gmx_unused·*nb)']1594 ····['gpu_5fget_5ftimings_1158',·['gpu_get_timings',·['../namespacegmx.xhtml#ab7a59287bd253fd4feccbc55b49dd6c7',·1,·'gmx::gpu_get_timings(NbnxmGpu·gmx_unused·*nb)'],
 1595 ········['../namespacegmx.xhtml#adc6c6fd8f6ed6f95bf9137379d020b76',·1,·'gmx::gpu_get_timings(NbnxmGpu·*nb)']
1596 ····]],1596 ····]],
1597 ····['gpu_5finit_1159',·['gpu_init',·['../namespacegmx.xhtml#ab372371672d176090085a7d51bfa0fe8',·1,·'gmx']]],1597 ····['gpu_5finit_1159',·['gpu_init',·['../namespacegmx.xhtml#ab372371672d176090085a7d51bfa0fe8',·1,·'gmx']]],
1598 ····['gpu_5finit_5fatomdata_1160',·['gpu_init_atomdata',·['../namespacegmx.xhtml#aed87fa557eeacefe44d14a79f92a13e5',·1,·'gmx']]],1598 ····['gpu_5finit_5fatomdata_1160',·['gpu_init_atomdata',·['../namespacegmx.xhtml#aed87fa557eeacefe44d14a79f92a13e5',·1,·'gmx']]],
1599 ····['gpu_5finit_5fpairlist_1161',·['gpu_init_pairlist',·['../namespacegmx.xhtml#a76b7889defa44d4b0e3c97d5ce6a4988',·1,·'gmx::gpu_init_pairlist(NbnxmGpu·*nb,·const·NbnxnPairlistGpu·*h_plist,·const·InteractionLocality·iloc)'], 
1600 ········['../namespacegmx.xhtml#acd25525982179407dd080639bb19f06d',·1,·'gmx::gpu_init_pairlist(NbnxmGpu·gmx_unused·*nb,·const·struct·NbnxnPairlistGpu·gmx_unused·*h_nblist,·InteractionLocality·gmx_unused·iloc)']1599 ····['gpu_5finit_5fpairlist_1161',·['gpu_init_pairlist',·['../namespacegmx.xhtml#acd25525982179407dd080639bb19f06d',·1,·'gmx::gpu_init_pairlist(NbnxmGpu·gmx_unused·*nb,·const·struct·NbnxnPairlistGpu·gmx_unused·*h_nblist,·InteractionLocality·gmx_unused·iloc)'],
 1600 ········['../namespacegmx.xhtml#a76b7889defa44d4b0e3c97d5ce6a4988',·1,·'gmx::gpu_init_pairlist(NbnxmGpu·*nb,·const·NbnxnPairlistGpu·*h_plist,·const·InteractionLocality·iloc)']
1601 ····]],1601 ····]],
1602 ····['gpu_5finit_5fplatform_5fspecific_1162',·['gpu_init_platform_specific',·['../namespacegmx.xhtml#a103fd146a3d324aaa3f78d11d51d312d',·1,·'gmx']]],1602 ····['gpu_5finit_5fplatform_5fspecific_1162',·['gpu_init_platform_specific',·['../namespacegmx.xhtml#a103fd146a3d324aaa3f78d11d51d312d',·1,·'gmx']]],
1603 ····['gpu_5fis_5fkernel_5fewald_5fanalytical_1163',·['gpu_is_kernel_ewald_analytical',·['../namespacegmx.xhtml#a366c2a577ce32bcf2ebe44221c22c9a7',·1,·'gmx']]],1603 ····['gpu_5fis_5fkernel_5fewald_5fanalytical_1163',·['gpu_is_kernel_ewald_analytical',·['../namespacegmx.xhtml#a366c2a577ce32bcf2ebe44221c22c9a7',·1,·'gmx']]],
1604 ····['gpu_5fjit_5fsupport_2eh_1164',·['gpu_jit_support.h',·['../gpu__jit__support_8h.xhtml',·1,·'']]],1604 ····['gpu_5fjit_5fsupport_2eh_1164',·['gpu_jit_support.h',·['../gpu__jit__support_8h.xhtml',·1,·'']]],
1605 ····['gpu_5fkernel_5futils_2eh_1165',·['gpu_kernel_utils.h',·['../gpu__kernel__utils_8h.xhtml',·1,·'']]],1605 ····['gpu_5fkernel_5futils_2eh_1165',·['gpu_kernel_utils.h',·['../gpu__kernel__utils_8h.xhtml',·1,·'']]],
 1606 ····['gpu_5flaunch_5fcpyback_1166',·['gpu_launch_cpyback',·['../namespacegmx.xhtml#a7f597489a21ec7526af49e30af3dd413',·1,·'gmx::gpu_launch_cpyback(NbnxmGpu·*nb,·struct·nbnxn_atomdata_t·*nbatom,·const·StepWorkload·&amp;stepWork,·const·AtomLocality·atomLocality)'],
1606 ····['gpu_5flaunch_5fcpyback_1166',·['gpu_launch_cpyback',·['../namespacegmx.xhtml#a7e44b47b3129712b572de33e51614622',·1,·'gmx::gpu_launch_cpyback(NbnxmGpu·gmx_unused·*nb,·nbnxn_atomdata_t·gmx_unused·*nbatom,·const·StepWorkload·gmx_unused·&amp;stepWork,·AtomLo[·...·truncated·by·diffoscope;·len:·26,·SHA:·669bf7d2a2ab3fc2fe3e4859906fe196be46e0b8046cea92a298675cc6027f96·...·]1607 ········['../namespacegmx.xhtml#a7e44b47b3129712b572de33e51614622',·1,·'gmx::gpu_launch_cpyback(NbnxmGpu·gmx_unused·*nb,·nbnxn_atomdata_t·gmx_unused·*nbatom,·const·StepWorkload·gmx_unused·&amp;stepWork,·AtomLocality·gmx_unused·aloc)']
1607 ········['../namespacegmx.xhtml#a7f597489a21ec7526af49e30af3dd413',·1,·'gmx::gpu_launch_cpyback(NbnxmGpu·*nb,·struct·nbnxn_atomdata_t·*nbatom,·const·StepWorkload·&amp;stepWork,·const·AtomLocality·atomLocality)'] 
1608 ····]],1608 ····]],
1609 ····['gpu_5flaunch_5fkernel_1167',·['gpu_launch_kernel',·['../namespacegmx.xhtml#a723c08560acc1da48993827cb2329fe2',·1,·'gmx::gpu_launch_kernel(NbnxmGpu·gmx_unused·*nb,·const·StepWorkload·gmx_unused·&amp;stepWork,·InteractionLocality·gmx_unused·iloc)'],1609 ····['gpu_5flaunch_5fkernel_1167',·['gpu_launch_kernel',·['../namespacegmx.xhtml#a723c08560acc1da48993827cb2329fe2',·1,·'gmx::gpu_launch_kernel(NbnxmGpu·gmx_unused·*nb,·const·StepWorkload·gmx_unused·&amp;stepWork,·InteractionLocality·gmx_unused·iloc)'],
1610 ········['../namespacegmx.xhtml#aeb2f9e9167216ea83e7c738b8fec38e3',·1,·'gmx::gpu_launch_kernel(NbnxmGpu·*nb,·const·gmx::StepWorkload·&amp;stepWork,·const·InteractionLocality·iloc)']1610 ········['../namespacegmx.xhtml#aeb2f9e9167216ea83e7c738b8fec38e3',·1,·'gmx::gpu_launch_kernel(NbnxmGpu·*nb,·const·gmx::StepWorkload·&amp;stepWork,·const·InteractionLocality·iloc)']
1611 ····]],1611 ····]],
1612 ····['gpu_5flaunch_5fkernel_5fpruneonly_1168',·['gpu_launch_kernel_pruneonly',·['../namespacegmx.xhtml#a265dfa2c107a06f8e50dab59e6719258',·1,·'gmx::gpu_launch_kernel_pruneonly(NbnxmGpu·gmx_unused·*nb,·InteractionLocality·gmx_unused·iloc,·int·gmx_unused·numParts)'],1612 ····['gpu_5flaunch_5fkernel_5fpruneonly_1168',·['gpu_launch_kernel_pruneonly',·['../namespacegmx.xhtml#a265dfa2c107a06f8e50dab59e6719258',·1,·'gmx::gpu_launch_kernel_pruneonly(NbnxmGpu·gmx_unused·*nb,·InteractionLocality·gmx_unused·iloc,·int·gmx_unused·numParts)'],
1613 ········['../namespacegmx.xhtml#a36f047b90a00b500a201854cfc3afeea',·1,·'gmx::gpu_launch_kernel_pruneonly(NbnxmGpu·*nb,·const·InteractionLocality·iloc,·const·int·numParts)']1613 ········['../namespacegmx.xhtml#a36f047b90a00b500a201854cfc3afeea',·1,·'gmx::gpu_launch_kernel_pruneonly(NbnxmGpu·*nb,·const·InteractionLocality·iloc,·const·int·numParts)']
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Offset 180, 16 lines modifiedOffset 180, 16 lines modified
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181 ····['haveppdomaindecomposition_5f_137',·['havePpDomainDecomposition_',·['../classgmx_1_1DeviceStreamManager_1_1Impl.xhtml#ac5838ece3cc4aa5534d85d0d59f31d39',·1,·'gmx::DeviceStreamManager::Impl']]],181 ····['haveppdomaindecomposition_5f_137',·['havePpDomainDecomposition_',·['../classgmx_1_1DeviceStreamManager_1_1Impl.xhtml#ac5838ece3cc4aa5534d85d0d59f31d39',·1,·'gmx::DeviceStreamManager::Impl']]],
182 ····['haverestraints_138',·['haveRestraints',·['../classListedForces.xhtml#a56ae47b0b9044b2c489298ea1578f15c',·1,·'ListedForces']]],182 ····['haverestraints_138',·['haveRestraints',·['../classListedForces.xhtml#a56ae47b0b9044b2c489298ea1578f15c',·1,·'ListedForces']]],
183 ····['havescrewpbc_139',·['haveScrewPBC',·['../structUnitCellInfo.xhtml#ab5bba3c375df6499381d7020eb2449bb',·1,·'UnitCellInfo']]],183 ····['havescrewpbc_139',·['haveScrewPBC',·['../structUnitCellInfo.xhtml#ab5bba3c375df6499381d7020eb2449bb',·1,·'UnitCellInfo']]],
184 ····['havesecondupdatetask_140',·['haveSecondUpdateTask',·['../classgmx_1_1Lincs.xhtml#a556346e605d7c18a225864f73ab21d3d',·1,·'gmx::Lincs']]],184 ····['havesecondupdatetask_140',·['haveSecondUpdateTask',·['../classgmx_1_1Lincs.xhtml#a556346e605d7c18a225864f73ab21d3d',·1,·'gmx::Lincs']]],
185 ····['haveseparatepmerank_141',·['haveSeparatePmeRank',·['../classgmx_1_1SimulationWorkload.xhtml#ab6ef46d7f69a25aa972254019686dccc',·1,·'gmx::SimulationWorkload']]],185 ····['haveseparatepmerank_141',·['haveSeparatePmeRank',·['../classgmx_1_1SimulationWorkload.xhtml#ab6ef46d7f69a25aa972254019686dccc',·1,·'gmx::SimulationWorkload']]],
186 ····['havesoftcore_142',·['haveSoftCore',·['../namespacegmx_1_1anonymous__namespace_02freeenergydispatch_8cpp_03.xhtml#a01bfead00417e4b79b79ebb4689da981',·1,·'gmx::anonymous_namespace{freeenergydispatch.cpp}']]],186 ····['havesoftcore_142',·['haveSoftCore',·['../namespacegmx_1_1anonymous__namespace_02freeenergydispatch_8cpp_03.xhtml#a01bfead00417e4b79b79ebb4689da981',·1,·'gmx::anonymous_namespace{freeenergydispatch.cpp}']]],
187 ····['havespecialforces_143',·['havespecialforces',·['../namespacegmx.xhtml#a07f20c896237b9d81d54c391c0a79573',·1,·'gmx::haveSpecialForces()'], 
188 ········['../classgmx_1_1DomainLifetimeWorkload.xhtml#a488c257ad510afcf326eb547c203db9c',·1,·'gmx::DomainLifetimeWorkload::haveSpecialForces']187 ····['havespecialforces_143',·['havespecialforces',·['../classgmx_1_1DomainLifetimeWorkload.xhtml#a488c257ad510afcf326eb547c203db9c',·1,·'gmx::DomainLifetimeWorkload::haveSpecialForces'],
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189 ····]],189 ····]],
190 ····['havespreadvsiteforces_144',·['haveSpreadVsiteForces',·['../classgmx_1_1ForceWithShiftForces.xhtml#a0797be6859a3e138c94eb6b4388c2de0',·1,·'gmx::ForceWithShiftForces']]],190 ····['havespreadvsiteforces_144',·['haveSpreadVsiteForces',·['../classgmx_1_1ForceWithShiftForces.xhtml#a0797be6859a3e138c94eb6b4388c2de0',·1,·'gmx::ForceWithShiftForces']]],
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192 ····['havesubscribers_146',·['haveSubscribers',·['../classgmx_1_1MDModulesNotifier.xhtml#a9fe2eaf34ecce424aed585cd6101b1c3',·1,·'gmx::MDModulesNotifier']]],192 ····['havesubscribers_146',·['haveSubscribers',·['../classgmx_1_1MDModulesNotifier.xhtml#a9fe2eaf34ecce424aed585cd6101b1c3',·1,·'gmx::MDModulesNotifier']]],
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194 ····['havevalidmtssetup_148',·['haveValidMtsSetup',·['../namespacegmx.xhtml#aa7f6a95d43d5e8db2b95967553c93432',·1,·'gmx']]],194 ····['havevalidmtssetup_148',·['haveValidMtsSetup',·['../namespacegmx.xhtml#aa7f6a95d43d5e8db2b95967553c93432',·1,·'gmx']]],
195 ····['havework_149',·['havework',·['../structgmx_1_1NbnxmGpu.xhtml#a9dcea3095a20935487ecc9134b404ee0',·1,·'gmx::NbnxmGpu::haveWork'],195 ····['havework_149',·['havework',·['../structgmx_1_1NbnxmGpu.xhtml#a9dcea3095a20935487ecc9134b404ee0',·1,·'gmx::NbnxmGpu::haveWork'],
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226 ····['helixpositions_169',·['HelixPositions',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a869b266ce47ab7979503e4447d09f37a',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],226 ····['helixpositions_169',·['HelixPositions',·['../namespacegmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03.xhtml#a869b266ce47ab7979503e4447d09f37a',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}']]],
227 ····['help_170',·['help',·['../page_wrapperbinary.xhtml#autotoc_md73',·1,·'Command·line·help'],227 ····['help_170',·['help',·['../page_wrapperbinary.xhtml#autotoc_md73',·1,·'Command·line·help'],
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228 ········['../structgmx__ana__selmethod__help__t.xhtml#ac0d1505d6da8c1912a5a3aab37927e7f',·1,·'gmx_ana_selmethod_help_t::help'],229 ········['../structgmx__ana__selmethod__help__t.xhtml#ac0d1505d6da8c1912a5a3aab37927e7f',·1,·'gmx_ana_selmethod_help_t::help']
229 ········['../structgmx__ana__selmethod__t.xhtml#ae7d6f1b14964a172d4d9ed38e50426a4',·1,·'gmx_ana_selmethod_t::help'] 
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232 ····['help_20formatting_20for_20online_20help_20onlinehelp_172',·['Help·Formatting·for·Online·Help·(onlinehelp)',·['../group__module__onlinehelp.xhtml',·1,·'']]],232 ····['help_20formatting_20for_20online_20help_20onlinehelp_172',·['Help·Formatting·for·Online·Help·(onlinehelp)',·['../group__module__onlinehelp.xhtml',·1,·'']]],
233 ····['help_20in_20other_20formats_173',·['Help·in·other·formats',·['../page_wrapperbinary.xhtml#autotoc_md74',·1,·'']]],233 ····['help_20in_20other_20formats_173',·['Help·in·other·formats',·['../page_wrapperbinary.xhtml#autotoc_md74',·1,·'']]],
234 ····['help_5fatomname_174',·['help_atomname',·['../sm__simple_8cpp.xhtml#a29a0e2cf7b47229a76d97109c02345ae',·1,·'sm_simple.cpp']]],234 ····['help_5fatomname_174',·['help_atomname',·['../sm__simple_8cpp.xhtml#a29a0e2cf7b47229a76d97109c02345ae',·1,·'sm_simple.cpp']]],
235 ····['help_5fdistance_175',·['help_distance',·['../sm__distance_8cpp.xhtml#adfcf38060537bda993410d562cb09dea',·1,·'sm_distance.cpp']]],235 ····['help_5fdistance_175',·['help_distance',·['../sm__distance_8cpp.xhtml#adfcf38060537bda993410d562cb09dea',·1,·'sm_distance.cpp']]],
236 ····['help_5finsolidangle_176',·['help_insolidangle',·['../sm__insolidangle_8cpp.xhtml#a8d1b673a4ecad9ac2f2b7b50495aa773',·1,·'sm_insolidangle.cpp']]],236 ····['help_5finsolidangle_176',·['help_insolidangle',·['../sm__insolidangle_8cpp.xhtml#a8d1b673a4ecad9ac2f2b7b50495aa773',·1,·'sm_insolidangle.cpp']]],
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241 ····['helpers_181',·['C++·standard·library·compatibility·helpers.',·['../group__group__compatibility.xhtml',·1,·'']]],241 ····['helpers_181',·['C++·standard·library·compatibility·helpers.',·['../group__group__compatibility.xhtml',·1,·'']]],
242 ····['helpexportcompletion_182',·['helpexportcompletion',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportCompletion.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion'],242 ····['helpexportcompletion_182',·['helpexportcompletion',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportCompletion.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion'],
243 ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportCompletion.xhtml#ad83b694e2124de02d6db4b8248c83831',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion::HelpExportCompletion()']243 ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportCompletion.xhtml#ad83b694e2124de02d6db4b8248c83831',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportCompletion::HelpExportCompletion()']
244 ····]],244 ····]],
245 ····['helpexportrestructuredtext_183',·['helpexportrestructuredtext',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportReStructuredText.xhtml#a7beb511be591b985e3b0ead22dfbe66d',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText::HelpExportReStructuredText()'],245 ····['helpexportrestructuredtext_183',·['helpexportrestructuredtext',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportReStructuredText.xhtml#a7beb511be591b985e3b0ead22dfbe66d',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText::HelpExportReStructuredText()'],
246 ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportReStructuredText.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText']246 ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1HelpExportReStructuredText.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::HelpExportReStructuredText']
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248 ····['helpformat_2ecpp_184',·['helpformat.cpp',·['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],248 ····['helpformat_2ecpp_184',·['helpformat.cpp',·['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],
249 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']249 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
250 ····]],250 ····]],
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252 ····['helplinks_186',·['helplinks',·['../classgmx_1_1HelpLinks.xhtml',·1,·'gmx::HelpLinks'],252 ····['helplinks_186',·['helplinks',·['../classgmx_1_1HelpLinks.xhtml',·1,·'gmx::HelpLinks'],
253 ········['../classgmx_1_1HelpLinks.xhtml#a8be2854c046e14440fc5da7ebfb04767',·1,·'gmx::HelpLinks::HelpLinks()']253 ········['../classgmx_1_1HelpLinks.xhtml#a8be2854c046e14440fc5da7ebfb04767',·1,·'gmx::HelpLinks::HelpLinks()']
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256 ········['../classgmx_1_1HelpManager.xhtml#a0578951cf2928a59819c0589065c4a5c',·1,·'gmx::HelpManager::HelpManager()']256 ········['../classgmx_1_1HelpManager.xhtml#a0578951cf2928a59819c0589065c4a5c',·1,·'gmx::HelpManager::HelpManager()']
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262 ····['helpmanagertest_190',·['HelpManagerTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02helpmanager_8cpp_03.xhtml#af3f158bf9b2db55ac1e2a2a60f6ee995',·1,·'gmx::test::anonymous_namespace{helpmanager.cpp}']]],262 ····['helpmanagertest_190',·['HelpManagerTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02helpmanager_8cpp_03.xhtml#af3f158bf9b2db55ac1e2a2a60f6ee995',·1,·'gmx::test::anonymous_namespace{helpmanager.cpp}']]],
263 ····['helpmodule_5f_191',·['helpModule_',·['../classgmx_1_1CommandLineModuleManager_1_1Impl.xhtml#a8b5a1258815add1b14dca4d8ff8998c4',·1,·'gmx::CommandLineModuleManager::Impl']]],263 ····['helpmodule_5f_191',·['helpModule_',·['../classgmx_1_1CommandLineModuleManager_1_1Impl.xhtml#a8b5a1258815add1b14dca4d8ff8998c4',·1,·'gmx::CommandLineModuleManager::Impl']]],
264 ····['helpoutputformat_192',·['HelpOutputFormat',·['../namespacegmx.xhtml#adc6936f6090da8e4cf7801c8e71ee37f',·1,·'gmx']]],264 ····['helpoutputformat_192',·['HelpOutputFormat',·['../namespacegmx.xhtml#adc6936f6090da8e4cf7801c8e71ee37f',·1,·'gmx']]],
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265 ····['helptext_193',·['helptext',·['../classgmx_1_1AbstractSimpleHelpTopic.xhtml#ac8df9bdad0655b933a63d4fcb84c3c90',·1,·'gmx::AbstractSimpleHelpTopic::helpText()'],266 ········['../classgmx_1_1AbstractSimpleHelpTopic.xhtml#ac8df9bdad0655b933a63d4fcb84c3c90',·1,·'gmx::AbstractSimpleHelpTopic::helpText()'],
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312 ····['histogramfrombins_222',·['histogramFromBins',·['../group__group__publicapi.xhtml#ga73a2213cd82e2f915b9f9d65a4b85212',·1,·'gmx']]],312 ····['histogramfrombins_222',·['histogramFromBins',·['../group__group__publicapi.xhtml#ga73a2213cd82e2f915b9f9d65a4b85212',·1,·'gmx']]],
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315 ····['histogramsize_225',·['histogramsize',·['../classgmx_1_1HistogramSize.xhtml',·1,·'gmx::HistogramSize'],315 ····['histogramsize_225',·['histogramsize',·['../classgmx_1_1HistogramSize.xhtml',·1,·'gmx::HistogramSize'],
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317 ········['../classgmx_1_1BiasState.xhtml#aa9f45bf3772811b41c2263d8d7985c72',·1,·'gmx::BiasState::histogramSize()'],316 ········['../classgmx_1_1BiasState.xhtml#aa9f45bf3772811b41c2263d8d7985c72',·1,·'gmx::BiasState::histogramSize()'],
318 ········['../classgmx_1_1HistogramSize.xhtml#a114eca6ee210c4f957fb5f1850b4ae3f',·1,·'gmx::HistogramSize::histogramSize()']317 ········['../classgmx_1_1HistogramSize.xhtml#a114eca6ee210c4f957fb5f1850b4ae3f',·1,·'gmx::HistogramSize::histogramSize()·const'],
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341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']
342 ····]],342 ····]],
343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],
344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],
345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],
346 ····['localatomsetdata_2eh_239',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],346 ····['localatomsetdata_2eh_239',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],
347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],
348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']
349 ····]],349 ····]],
350 ····['localatomsetmanager_2ecpp_241',·['localatomsetmanager.cpp',·['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],350 ····['localatomsetmanager_2ecpp_241',·['localatomsetmanager.cpp',·['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
351 ········['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']351 ········['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
352 ····]],352 ····]],
353 ····['localatomsetmanager_2eh_242',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]],353 ····['localatomsetmanager_2eh_242',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]],
354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],
355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],
356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],
357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],
358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],
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Offset 5, 35 lines modifiedOffset 5, 35 lines modified
5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],
6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],
8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],
9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],
10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],
23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],
27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],
28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],
29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],
30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],
31 ····['angle_2ecpp_23',·['angle.cpp',·['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],31 ····['angle_2ecpp_23',·['angle.cpp',·['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],
32 ········['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']32 ········['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']
33 ····]],33 ····]],
34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],
35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],
36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],
37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],
38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']
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Offset 40, 16 lines modifiedOffset 40, 16 lines modified
40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],
41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],
42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],
43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],
44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],
45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],
46 ····['box_2eh_38',·['box.h',·['../box_8h.xhtml',·1,·'']]],46 ····['box_2eh_38',·['box.h',·['../box_8h.xhtml',·1,·'']]],
47 ····['boxdeformation_2ecpp_39',·['boxdeformation.cpp',·['../gromacs_2mdlib_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'],47 ····['boxdeformation_2ecpp_39',·['boxdeformation.cpp',·['../programs_2mdrun_2tests_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'],
48 ········['../programs_2mdrun_2tests_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)']48 ········['../gromacs_2mdlib_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)']
49 ····]],49 ····]],
50 ····['boxdeformation_2eh_40',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]],50 ····['boxdeformation_2eh_40',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]],
51 ····['boxmatrix_2ecpp_41',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]],51 ····['boxmatrix_2ecpp_41',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]],
52 ····['boxmatrix_2eh_42',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]],52 ····['boxmatrix_2eh_42',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]],
53 ····['boxutilities_2ecpp_43',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]],53 ····['boxutilities_2ecpp_43',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]],
54 ····['broadcaststructs_2eh_44',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]],54 ····['broadcaststructs_2eh_44',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]],
55 ····['builder_2ecpp_45',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]],55 ····['builder_2ecpp_45',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]],
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Offset 15, 33 lines modifiedOffset 15, 33 lines modified
15 ····['refdata_5fcheckers_2eh_11',·['refdata_checkers.h',·['../refdata__checkers_8h.xhtml',·1,·'']]],15 ····['refdata_5fcheckers_2eh_11',·['refdata_checkers.h',·['../refdata__checkers_8h.xhtml',·1,·'']]],
16 ····['refdata_5fimpl_2eh_12',·['refdata_impl.h',·['../refdata__impl_8h.xhtml',·1,·'']]],16 ····['refdata_5fimpl_2eh_12',·['refdata_impl.h',·['../refdata__impl_8h.xhtml',·1,·'']]],
17 ····['refdata_5ftests_2ecpp_13',·['refdata_tests.cpp',·['../refdata__tests_8cpp.xhtml',·1,·'']]],17 ····['refdata_5ftests_2ecpp_13',·['refdata_tests.cpp',·['../refdata__tests_8cpp.xhtml',·1,·'']]],
18 ····['refdata_5fxml_2ecpp_14',·['refdata_xml.cpp',·['../refdata__xml_8cpp.xhtml',·1,·'']]],18 ····['refdata_5fxml_2ecpp_14',·['refdata_xml.cpp',·['../refdata__xml_8cpp.xhtml',·1,·'']]],
19 ····['refdata_5fxml_2eh_15',·['refdata_xml.h',·['../refdata__xml_8h.xhtml',·1,·'']]],19 ····['refdata_5fxml_2eh_15',·['refdata_xml.h',·['../refdata__xml_8h.xhtml',·1,·'']]],
20 ····['referencetemperaturemanager_2ecpp_16',·['referencetemperaturemanager.cpp',·['../referencetemperaturemanager_8cpp.xhtml',·1,·'']]],20 ····['referencetemperaturemanager_2ecpp_16',·['referencetemperaturemanager.cpp',·['../referencetemperaturemanager_8cpp.xhtml',·1,·'']]],
21 ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]],21 ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]],
22 ····['register_2ecpp_18',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],22 ····['register_2ecpp_18',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
23 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']23 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
24 ····]],24 ····]],
25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],25 ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]],
26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],26 ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]],
27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],27 ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]],
28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],28 ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'],
29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']29 ········['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']
30 ····]],30 ····]],
31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'],39 ····['requirements_2eh_29',·['requirements.h',·['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'],
40 ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)']40 ········['../requirements_8h.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],
46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],
47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],
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3 ········['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']3 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
4 ····]],4 ····]],
5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],5 ····['sasa_2eh_1',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],6 ····['scalar_2eh_2',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],7 ····['scalar_5fmath_2eh_3',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
8 ····['scalar_5futil_2eh_4',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],8 ····['scalar_5futil_2eh_4',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],
9 ····['scanner_2eh_5',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],9 ····['scanner_2eh_5',·['scanner.h',·['../scanner_8h.xhtml',·1,·'']]],
10 ····['scanner_5finternal_2ecpp_6',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],10 ····['scanner_5finternal_2ecpp_6',·['scanner_internal.cpp',·['../scanner__internal_8cpp.xhtml',·1,·'']]],
Offset 20, 16 lines modifiedOffset 20, 16 lines modified
20 ····]],20 ····]],
21 ····['scattering_2eh_15',·['scattering.h',·['../scattering_8h.xhtml',·1,·'']]],21 ····['scattering_2eh_15',·['scattering.h',·['../scattering_8h.xhtml',·1,·'']]],
22 ····['scatteringfactors_2ecpp_16',·['scatteringfactors.cpp',·['../scatteringfactors_8cpp.xhtml',·1,·'']]],22 ····['scatteringfactors_2ecpp_16',·['scatteringfactors.cpp',·['../scatteringfactors_8cpp.xhtml',·1,·'']]],
23 ····['scatteringfactors_2eh_17',·['scatteringfactors.h',·['../scatteringfactors_8h.xhtml',·1,·'']]],23 ····['scatteringfactors_2eh_17',·['scatteringfactors.h',·['../scatteringfactors_8h.xhtml',·1,·'']]],
24 ····['scope_5fguard_2ecpp_18',·['scope_guard.cpp',·['../scope__guard_8cpp.xhtml',·1,·'']]],24 ····['scope_5fguard_2ecpp_18',·['scope_guard.cpp',·['../scope__guard_8cpp.xhtml',·1,·'']]],
25 ····['seed_2ecpp_19',·['seed.cpp',·['../tests_2seed_8cpp.xhtml',·1,·'']]],25 ····['seed_2ecpp_19',·['seed.cpp',·['../tests_2seed_8cpp.xhtml',·1,·'']]],
26 ····['seed_2eh_20',·['seed.h',·['../seed_8h.xhtml',·1,·'']]],26 ····['seed_2eh_20',·['seed.h',·['../seed_8h.xhtml',·1,·'']]],
27 ····['select_2ecpp_21',·['select.cpp',·['../modules_2select_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['select_2ecpp_21',·['select.cpp',·['../tests_2select_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../tests_2select_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../modules_2select_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['select_2eh_22',·['select.h',·['../select_8h.xhtml',·1,·'']]],30 ····['select_2eh_22',·['select.h',·['../select_8h.xhtml',·1,·'']]],
31 ····['selection_2ecpp_23',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],31 ····['selection_2ecpp_23',·['selection.cpp',·['../selection_8cpp.xhtml',·1,·'']]],
32 ····['selection_2eh_24',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],32 ····['selection_2eh_24',·['selection.h',·['../selection_8h.xhtml',·1,·'']]],
33 ····['selectioncollection_2ecpp_25',·['selectioncollection.cpp',·['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['selectioncollection_2ecpp_25',·['selectioncollection.cpp',·['../tests_2selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../selectioncollection_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
Offset 52, 16 lines modifiedOffset 52, 16 lines modified
52 ····['selhelp_2ecpp_40',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]],52 ····['selhelp_2ecpp_40',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]],
53 ····['selhelp_2eh_41',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],53 ····['selhelp_2eh_41',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]],
54 ····['selmethod_2ecpp_42',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],54 ····['selmethod_2ecpp_42',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]],
55 ····['selmethod_2eh_43',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],55 ····['selmethod_2eh_43',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]],
56 ····['selparam_2eh_44',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],56 ····['selparam_2eh_44',·['selparam.h',·['../selparam_8h.xhtml',·1,·'']]],
57 ····['selvalue_2ecpp_45',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],57 ····['selvalue_2ecpp_45',·['selvalue.cpp',·['../selvalue_8cpp.xhtml',·1,·'']]],
58 ····['selvalue_2eh_46',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],58 ····['selvalue_2eh_46',·['selvalue.h',·['../selvalue_8h.xhtml',·1,·'']]],
59 ····['setatoms_2ecpp_47',·['setatoms.cpp',·['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],59 ····['setatoms_2ecpp_47',·['setatoms.cpp',·['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],
60 ········['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']60 ········['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']
61 ····]],61 ····]],
62 ····['setatoms_2eh_48',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],62 ····['setatoms_2eh_48',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],
63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
Offset 92, 16 lines modifiedOffset 92, 16 lines modified
92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],
93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],
94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],
95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],
96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],
97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],
98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],
99 ····['simd_2eh_79',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)'],99 ····['simd_2eh_79',·['simd.h',·['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)'],
100 ········['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)']100 ········['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)']
101 ····]],101 ····]],
102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],
103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],
104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],
105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],
106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],
Offset 112, 16 lines modifiedOffset 112, 16 lines modified
112 ····['simple_5fmdrun_2ecpp_90',·['simple_mdrun.cpp',·['../simple__mdrun_8cpp.xhtml',·1,·'']]],112 ····['simple_5fmdrun_2ecpp_90',·['simple_mdrun.cpp',·['../simple__mdrun_8cpp.xhtml',·1,·'']]],
113 ····['simulation_5fworkload_2eh_91',·['simulation_workload.h',·['../simulation__workload_8h.xhtml',·1,·'']]],113 ····['simulation_5fworkload_2eh_91',·['simulation_workload.h',·['../simulation__workload_8h.xhtml',·1,·'']]],
114 ····['simulationcontext_2eh_92',·['simulationcontext.h',·['../simulationcontext_8h.xhtml',·1,·'']]],114 ····['simulationcontext_2eh_92',·['simulationcontext.h',·['../simulationcontext_8h.xhtml',·1,·'']]],
115 ····['simulationdatabase_2ecpp_93',·['simulationdatabase.cpp',·['../simulationdatabase_8cpp.xhtml',·1,·'']]],115 ····['simulationdatabase_2ecpp_93',·['simulationdatabase.cpp',·['../simulationdatabase_8cpp.xhtml',·1,·'']]],
116 ····['simulationdatabase_2eh_94',·['simulationdatabase.h',·['../simulationdatabase_8h.xhtml',·1,·'']]],116 ····['simulationdatabase_2eh_94',·['simulationdatabase.h',·['../simulationdatabase_8h.xhtml',·1,·'']]],
117 ····['simulationinput_2eh_95',·['simulationinput.h',·['../simulationinput_8h.xhtml',·1,·'']]],117 ····['simulationinput_2eh_95',·['simulationinput.h',·['../simulationinput_8h.xhtml',·1,·'']]],
118 ····['simulationinputhandle_2eh_96',·['simulationinputhandle.h',·['../simulationinputhandle_8h.xhtml',·1,·'']]],118 ····['simulationinputhandle_2eh_96',·['simulationinputhandle.h',·['../simulationinputhandle_8h.xhtml',·1,·'']]],
119 ····['simulationsignal_2ecpp_97',·['simulationsignal.cpp',·['../simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)'],119 ····['simulationsignal_2ecpp_97',·['simulationsignal.cpp',·['../tests_2simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)'],
120 ········['../tests_2simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)']120 ········['../simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)']
121 ····]],121 ····]],
122 ····['simulationsignal_2eh_98',·['simulationsignal.h',·['../simulationsignal_8h.xhtml',·1,·'']]],122 ····['simulationsignal_2eh_98',·['simulationsignal.h',·['../simulationsignal_8h.xhtml',·1,·'']]],
123 ····['simulator_2ecpp_99',·['simulator.cpp',·['../simulator_8cpp.xhtml',·1,·'']]],123 ····['simulator_2ecpp_99',·['simulator.cpp',·['../simulator_8cpp.xhtml',·1,·'']]],
124 ····['simulatoralgorithm_2ecpp_100',·['simulatoralgorithm.cpp',·['../simulatoralgorithm_8cpp.xhtml',·1,·'']]],124 ····['simulatoralgorithm_2ecpp_100',·['simulatoralgorithm.cpp',·['../simulatoralgorithm_8cpp.xhtml',·1,·'']]],
125 ····['simulatoralgorithm_2eh_101',·['simulatoralgorithm.h',·['../simulatoralgorithm_8h.xhtml',·1,·'']]],125 ····['simulatoralgorithm_2eh_101',·['simulatoralgorithm.h',·['../simulatoralgorithm_8h.xhtml',·1,·'']]],
126 ····['simulatorbuilder_2ecpp_102',·['simulatorbuilder.cpp',·['../simulatorbuilder_8cpp.xhtml',·1,·'']]],126 ····['simulatorbuilder_2ecpp_102',·['simulatorbuilder.cpp',·['../simulatorbuilder_8cpp.xhtml',·1,·'']]],
127 ····['simulatorcomparison_2ecpp_103',·['simulatorcomparison.cpp',·['../simulatorcomparison_8cpp.xhtml',·1,·'']]],127 ····['simulatorcomparison_2ecpp_103',·['simulatorcomparison.cpp',·['../simulatorcomparison_8cpp.xhtml',·1,·'']]],
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Offset 49, 16 lines modifiedOffset 49, 16 lines modified
49 ····['thermochemistry_2eh_43',·['thermochemistry.h',·['../thermochemistry_8h.xhtml',·1,·'']]],49 ····['thermochemistry_2eh_43',·['thermochemistry.h',·['../thermochemistry_8h.xhtml',·1,·'']]],
50 ····['threadaffinity_2eh_44',·['threadaffinity.h',·['../threadaffinity_8h.xhtml',·1,·'']]],50 ····['threadaffinity_2eh_44',·['threadaffinity.h',·['../threadaffinity_8h.xhtml',·1,·'']]],
51 ····['threaded_5fforce_5fbuffer_2ecpp_45',·['threaded_force_buffer.cpp',·['../threaded__force__buffer_8cpp.xhtml',·1,·'']]],51 ····['threaded_5fforce_5fbuffer_2ecpp_45',·['threaded_force_buffer.cpp',·['../threaded__force__buffer_8cpp.xhtml',·1,·'']]],
52 ····['threaded_5fforce_5fbuffer_2eh_46',·['threaded_force_buffer.h',·['../threaded__force__buffer_8h.xhtml',·1,·'']]],52 ····['threaded_5fforce_5fbuffer_2eh_46',·['threaded_force_buffer.h',·['../threaded__force__buffer_8h.xhtml',·1,·'']]],
53 ····['threefry_2ecpp_47',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],53 ····['threefry_2ecpp_47',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],
54 ····['threefry_2eh_48',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],54 ····['threefry_2eh_48',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],
55 ····['timecontrol_2ecpp_49',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],55 ····['timecontrol_2ecpp_49',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],
56 ····['timeunitmanager_2ecpp_50',·['timeunitmanager.cpp',·['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],56 ····['timeunitmanager_2ecpp_50',·['timeunitmanager.cpp',·['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
57 ········['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']57 ········['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
58 ····]],58 ····]],
59 ····['timeunitmanager_2eh_51',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],59 ····['timeunitmanager_2eh_51',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],
60 ····['timing_2ecpp_52',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],60 ····['timing_2ecpp_52',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],
61 ····['tngio_2ecpp_53',·['tngio.cpp',·['../tests_2tngio_8cpp.xhtml',·1,·'']]],61 ····['tngio_2ecpp_53',·['tngio.cpp',·['../tests_2tngio_8cpp.xhtml',·1,·'']]],
62 ····['topdirs_2ecpp_54',·['topdirs.cpp',·['../tests_2topdirs_8cpp.xhtml',·1,·'']]],62 ····['topdirs_2ecpp_54',·['topdirs.cpp',·['../tests_2topdirs_8cpp.xhtml',·1,·'']]],
63 ····['topologyhelpers_2ecpp_55',·['topologyhelpers.cpp',·['../topologyhelpers_8cpp.xhtml',·1,·'']]],63 ····['topologyhelpers_2ecpp_55',·['topologyhelpers.cpp',·['../topologyhelpers_8cpp.xhtml',·1,·'']]],
64 ····['topologyhelpers_2eh_56',·['topologyhelpers.h',·['../topologyhelpers_8h.xhtml',·1,·'']]],64 ····['topologyhelpers_2eh_56',·['topologyhelpers.h',·['../topologyhelpers_8h.xhtml',·1,·'']]],
Offset 85, 16 lines modifiedOffset 85, 16 lines modified
85 ····['trajectorycomparison_2ecpp_73',·['trajectorycomparison.cpp',·['../trajectorycomparison_8cpp.xhtml',·1,·'']]],85 ····['trajectorycomparison_2ecpp_73',·['trajectorycomparison.cpp',·['../trajectorycomparison_8cpp.xhtml',·1,·'']]],
86 ····['trajectorycomparison_2eh_74',·['trajectorycomparison.h',·['../trajectorycomparison_8h.xhtml',·1,·'']]],86 ····['trajectorycomparison_2eh_74',·['trajectorycomparison.h',·['../trajectorycomparison_8h.xhtml',·1,·'']]],
87 ····['trajectoryelement_2ecpp_75',·['trajectoryelement.cpp',·['../trajectoryelement_8cpp.xhtml',·1,·'']]],87 ····['trajectoryelement_2ecpp_75',·['trajectoryelement.cpp',·['../trajectoryelement_8cpp.xhtml',·1,·'']]],
88 ····['trajectoryelement_2eh_76',·['trajectoryelement.h',·['../trajectoryelement_8h.xhtml',·1,·'']]],88 ····['trajectoryelement_2eh_76',·['trajectoryelement.h',·['../trajectoryelement_8h.xhtml',·1,·'']]],
89 ····['trajectoryreader_2ecpp_77',·['trajectoryreader.cpp',·['../trajectoryreader_8cpp.xhtml',·1,·'']]],89 ····['trajectoryreader_2ecpp_77',·['trajectoryreader.cpp',·['../trajectoryreader_8cpp.xhtml',·1,·'']]],
90 ····['trajectoryreader_2eh_78',·['trajectoryreader.h',·['../trajectoryreader_8h.xhtml',·1,·'']]],90 ····['trajectoryreader_2eh_78',·['trajectoryreader.h',·['../trajectoryreader_8h.xhtml',·1,·'']]],
91 ····['transformationcoordinate_2eh_79',·['transformationcoordinate.h',·['../transformationcoordinate_8h.xhtml',·1,·'']]],91 ····['transformationcoordinate_2eh_79',·['transformationcoordinate.h',·['../transformationcoordinate_8h.xhtml',·1,·'']]],
92 ····['treesupport_2ecpp_80',·['treesupport.cpp',·['../tests_2treesupport_8cpp.xhtml',·1,·'(Global·Namespace)'],92 ····['treesupport_2ecpp_80',·['treesupport.cpp',·['../treesupport_8cpp.xhtml',·1,·'(Global·Namespace)'],
93 ········['../treesupport_8cpp.xhtml',·1,·'(Global·Namespace)']93 ········['../tests_2treesupport_8cpp.xhtml',·1,·'(Global·Namespace)']
94 ····]],94 ····]],
95 ····['treesupport_2eh_81',·['treesupport.h',·['../treesupport_8h.xhtml',·1,·'']]],95 ····['treesupport_2eh_81',·['treesupport.h',·['../treesupport_8h.xhtml',·1,·'']]],
96 ····['trjconv_2ecpp_82',·['trjconv.cpp',·['../tests_2trjconv_8cpp.xhtml',·1,·'']]],96 ····['trjconv_2ecpp_82',·['trjconv.cpp',·['../tests_2trjconv_8cpp.xhtml',·1,·'']]],
97 ····['trotterhelperfunctions_2eh_83',·['trotterhelperfunctions.h',·['../trotterhelperfunctions_8h.xhtml',·1,·'']]],97 ····['trotterhelperfunctions_2eh_83',·['trotterhelperfunctions.h',·['../trotterhelperfunctions_8h.xhtml',·1,·'']]],
98 ····['txtdump_2eh_84',·['txtdump.h',·['../txtdump_8h.xhtml',·1,·'']]],98 ····['txtdump_2eh_84',·['txtdump.h',·['../txtdump_8h.xhtml',·1,·'']]],
99 ····['typecasts_2ecpp_85',·['typecasts.cpp',·['../typecasts_8cpp.xhtml',·1,·'']]],99 ····['typecasts_2ecpp_85',·['typecasts.cpp',·['../typecasts_8cpp.xhtml',·1,·'']]],
100 ····['typecasts_5fcuda_5fhip_2eh_86',·['typecasts_cuda_hip.h',·['../typecasts__cuda__hip_8h.xhtml',·1,·'']]],100 ····['typecasts_5fcuda_5fhip_2eh_86',·['typecasts_cuda_hip.h',·['../typecasts__cuda__hip_8h.xhtml',·1,·'']]],
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21 ····]],21 ····]],
22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],
23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],
27 ····['utility_2eh_21',·['utility.h',·['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],27 ····['utility_2eh_21',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'],
28 ········['../utility_8h.xhtml',·1,·'(Global·Namespace)']28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)']
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69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],69 ····['colvarsmdmodule_2ecpp_49',·['colvarsMDModule.cpp',·['../colvarsMDModule_8cpp.xhtml',·1,·'']]],
70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],70 ····['colvarsmdmodule_2eh_50',·['colvarsMDModule.h',·['../colvarsMDModule_8h.xhtml',·1,·'']]],
71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],71 ····['colvarsmdmodule_5fstub_2ecpp_51',·['colvarsMDModule_stub.cpp',·['../colvarsMDModule__stub_8cpp.xhtml',·1,·'']]],
72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],72 ····['colvarsoptions_2ecpp_52',·['colvarsoptions.cpp',·['../tests_2colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
73 ········['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']73 ········['../colvarsoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
74 ····]],74 ····]],
75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],75 ····['colvarsoptions_2eh_53',·['colvarsoptions.h',·['../colvarsoptions_8h.xhtml',·1,·'']]],
76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],79 ····['colvarspreprocessor_2eh_55',·['colvarspreprocessor.h',·['../colvarspreprocessor_8h.xhtml',·1,·'']]],
80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],
81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],
82 ····['com_2ecpp_58',·['com.cpp',·['../com_8cpp.xhtml',·1,·'(Global·Namespace)'],82 ····['com_2ecpp_58',·['com.cpp',·['../com_8cpp.xhtml',·1,·'(Global·Namespace)'],
83 ········['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)']83 ········['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)']
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95 ····['computeglobalselement_2eh_69',·['computeglobalselement.h',·['../computeglobalselement_8h.xhtml',·1,·'']]],95 ····['computeglobalselement_2eh_69',·['computeglobalselement.h',·['../computeglobalselement_8h.xhtml',·1,·'']]],
96 ····['computemultibodycutoffs_2ecpp_70',·['computemultibodycutoffs.cpp',·['../computemultibodycutoffs_8cpp.xhtml',·1,·'']]],96 ····['computemultibodycutoffs_2ecpp_70',·['computemultibodycutoffs.cpp',·['../computemultibodycutoffs_8cpp.xhtml',·1,·'']]],
97 ····['computemultibodycutoffs_2eh_71',·['computemultibodycutoffs.h',·['../computemultibodycutoffs_8h.xhtml',·1,·'']]],97 ····['computemultibodycutoffs_2eh_71',·['computemultibodycutoffs.h',·['../computemultibodycutoffs_8h.xhtml',·1,·'']]],
98 ····['confio_2ecpp_72',·['confio.cpp',·['../tests_2confio_8cpp.xhtml',·1,·'']]],98 ····['confio_2ecpp_72',·['confio.cpp',·['../tests_2confio_8cpp.xhtml',·1,·'']]],
99 ····['conftest_2ecpp_73',·['conftest.cpp',·['../conftest_8cpp.xhtml',·1,·'']]],99 ····['conftest_2ecpp_73',·['conftest.cpp',·['../conftest_8cpp.xhtml',·1,·'']]],
100 ····['conftest_2eh_74',·['conftest.h',·['../conftest_8h.xhtml',·1,·'']]],100 ····['conftest_2eh_74',·['conftest.h',·['../conftest_8h.xhtml',·1,·'']]],
101 ····['constantacceleration_2ecpp_75',·['constantacceleration.cpp',·['../constantacceleration_8cpp.xhtml',·1,·'']]],101 ····['constantacceleration_2ecpp_75',·['constantacceleration.cpp',·['../constantacceleration_8cpp.xhtml',·1,·'']]],
102 ····['constr_2ecpp_76',·['constr.cpp',·['../tests_2constr_8cpp.xhtml',·1,·'(Global·Namespace)'],102 ····['constr_2ecpp_76',·['constr.cpp',·['../constr_8cpp.xhtml',·1,·'(Global·Namespace)'],
103 ········['../constr_8cpp.xhtml',·1,·'(Global·Namespace)']103 ········['../tests_2constr_8cpp.xhtml',·1,·'(Global·Namespace)']
104 ····]],104 ····]],
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106 ····['constraintelement_2ecpp_78',·['constraintelement.cpp',·['../constraintelement_8cpp.xhtml',·1,·'']]],106 ····['constraintelement_2ecpp_78',·['constraintelement.cpp',·['../constraintelement_8cpp.xhtml',·1,·'']]],
107 ····['constraintelement_2eh_79',·['constraintelement.h',·['../constraintelement_8h.xhtml',·1,·'']]],107 ····['constraintelement_2eh_79',·['constraintelement.h',·['../constraintelement_8h.xhtml',·1,·'']]],
108 ····['constrtestdata_2ecpp_80',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],108 ····['constrtestdata_2ecpp_80',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],
109 ····['constrtestdata_2eh_81',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],109 ····['constrtestdata_2eh_81',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],
110 ····['constrtestrunners_2ecpp_82',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],110 ····['constrtestrunners_2ecpp_82',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],
111 ····['constrtestrunners_2eh_83',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],111 ····['constrtestrunners_2eh_83',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],
112 ····['constrtestrunners_5fgpu_2ecpp_84',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],112 ····['constrtestrunners_5fgpu_2ecpp_84',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],
113 ····['convert_2dtpr_2dfixture_2eh_85',·['convert-tpr-fixture.h',·['../convert-tpr-fixture_8h.xhtml',·1,·'']]],113 ····['convert_2dtpr_2dfixture_2eh_85',·['convert-tpr-fixture.h',·['../convert-tpr-fixture_8h.xhtml',·1,·'']]],
114 ····['convert_2dtpr_2dwith_2dleaks_2ecpp_86',·['convert-tpr-with-leaks.cpp',·['../convert-tpr-with-leaks_8cpp.xhtml',·1,·'']]],114 ····['convert_2dtpr_2dwith_2dleaks_2ecpp_86',·['convert-tpr-with-leaks.cpp',·['../convert-tpr-with-leaks_8cpp.xhtml',·1,·'']]],
115 ····['convert_2dtpr_2ecpp_87',·['convert-tpr.cpp',·['../convert-tpr_8cpp.xhtml',·1,·'']]],115 ····['convert_2dtpr_2ecpp_87',·['convert-tpr.cpp',·['../convert-tpr_8cpp.xhtml',·1,·'']]],
116 ····['convert_5ftrj_2ecpp_88',·['convert_trj.cpp',·['../modules_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)'],116 ····['convert_5ftrj_2ecpp_88',·['convert_trj.cpp',·['../tests_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)'],
117 ········['../tests_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)']117 ········['../modules_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)']
118 ····]],118 ····]],
119 ····['convert_5ftrj_2eh_89',·['convert_trj.h',·['../convert__trj_8h.xhtml',·1,·'']]],119 ····['convert_5ftrj_2eh_89',·['convert_trj.h',·['../convert__trj_8h.xhtml',·1,·'']]],
120 ····['convparm_2ecpp_90',·['convparm.cpp',·['../tests_2convparm_8cpp.xhtml',·1,·'']]],120 ····['convparm_2ecpp_90',·['convparm.cpp',·['../tests_2convparm_8cpp.xhtml',·1,·'']]],
121 ····['coolstuff_2ecpp_91',·['coolstuff.cpp',·['../coolstuff_8cpp.xhtml',·1,·'']]],121 ····['coolstuff_2ecpp_91',·['coolstuff.cpp',·['../coolstuff_8cpp.xhtml',·1,·'']]],
122 ····['coolstuff_2eh_92',·['coolstuff.h',·['../coolstuff_8h.xhtml',·1,·'']]],122 ····['coolstuff_2eh_92',·['coolstuff.h',·['../coolstuff_8h.xhtml',·1,·'']]],
123 ····['coordinate_5ftest_2eh_93',·['coordinate_test.h',·['../coordinate__test_8h.xhtml',·1,·'']]],123 ····['coordinate_5ftest_2eh_93',·['coordinate_test.h',·['../coordinate__test_8h.xhtml',·1,·'']]],
124 ····['coordinatefile_2ecpp_94',·['coordinatefile.cpp',·['../coordinatefile_8cpp.xhtml',·1,·'']]],124 ····['coordinatefile_2ecpp_94',·['coordinatefile.cpp',·['../coordinatefile_8cpp.xhtml',·1,·'']]],
125 ····['coordinatefile_2eh_95',·['coordinatefile.h',·['../coordinatefile_8h.xhtml',·1,·'']]],125 ····['coordinatefile_2eh_95',·['coordinatefile.h',·['../coordinatefile_8h.xhtml',·1,·'']]],
126 ····['coordinatefileenums_2eh_96',·['coordinatefileenums.h',·['../coordinatefileenums_8h.xhtml',·1,·'']]],126 ····['coordinatefileenums_2eh_96',·['coordinatefileenums.h',·['../coordinatefileenums_8h.xhtml',·1,·'']]],
127 ····['coordinatetransformation_2ecpp_97',·['coordinatetransformation.cpp',·['../tests_2coordinatetransformation_8cpp.xhtml',·1,·'(Global·Namespace)'],127 ····['coordinatetransformation_2ecpp_97',·['coordinatetransformation.cpp',·['../coordinatetransformation_8cpp.xhtml',·1,·'(Global·Namespace)'],
128 ········['../coordinatetransformation_8cpp.xhtml',·1,·'(Global·Namespace)']128 ········['../tests_2coordinatetransformation_8cpp.xhtml',·1,·'(Global·Namespace)']
129 ····]],129 ····]],
130 ····['coordinatetransformation_2eh_98',·['coordinatetransformation.h',·['../coordinatetransformation_8h.xhtml',·1,·'']]],130 ····['coordinatetransformation_2eh_98',·['coordinatetransformation.h',·['../coordinatetransformation_8h.xhtml',·1,·'']]],
131 ····['coordstate_2ecpp_99',·['coordstate.cpp',·['../coordstate_8cpp.xhtml',·1,·'']]],131 ····['coordstate_2ecpp_99',·['coordstate.cpp',·['../coordstate_8cpp.xhtml',·1,·'']]],
132 ····['coordstate_2eh_100',·['coordstate.h',·['../coordstate_8h.xhtml',·1,·'']]],132 ····['coordstate_2eh_100',·['coordstate.h',·['../coordstate_8h.xhtml',·1,·'']]],
133 ····['correlationdataset_2ecpp_101',·['correlationdataset.cpp',·['../correlationdataset_8cpp.xhtml',·1,·'']]],133 ····['correlationdataset_2ecpp_101',·['correlationdataset.cpp',·['../correlationdataset_8cpp.xhtml',·1,·'']]],
134 ····['correlationdataset_2eh_102',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],134 ····['correlationdataset_2eh_102',·['correlationdataset.h',·['../correlationdataset_8h.xhtml',·1,·'']]],
135 ····['correlationgrid_2ecpp_103',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],135 ····['correlationgrid_2ecpp_103',·['correlationgrid.cpp',·['../correlationgrid_8cpp.xhtml',·1,·'']]],
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20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],
21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],
22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],
23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],
24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
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41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
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8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],
9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],
10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],
15 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']
16 ····]],16 ····]],
17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],
18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],
19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],
20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],
24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],
25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],
26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
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41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],
42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],
43 ····['frameaverager_2eh_35',·['frameaverager.h',·['../frameaverager_8h.xhtml',·1,·'']]],43 ····['frameaverager_2eh_35',·['frameaverager.h',·['../frameaverager_8h.xhtml',·1,·'']]],
44 ····['frameconverter_2eh_36',·['frameconverter.h',·['../frameconverter_8h.xhtml',·1,·'']]],44 ····['frameconverter_2eh_36',·['frameconverter.h',·['../frameconverter_8h.xhtml',·1,·'']]],
45 ····['frameconverterenums_2eh_37',·['frameconverterenums.h',·['../frameconverterenums_8h.xhtml',·1,·'']]],45 ····['frameconverterenums_2eh_37',·['frameconverterenums.h',·['../frameconverterenums_8h.xhtml',·1,·'']]],
46 ····['framelocaldata_2eh_38',·['framelocaldata.h',·['../framelocaldata_8h.xhtml',·1,·'']]],46 ····['framelocaldata_2eh_38',·['framelocaldata.h',·['../framelocaldata_8h.xhtml',·1,·'']]],
47 ····['freeenergy_2ecpp_39',·['freeenergy.cpp',·['../gromacs_2mdrunutility_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)'],47 ····['freeenergy_2ecpp_39',·['freeenergy.cpp',·['../programs_2mdrun_2tests_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)'],
48 ········['../programs_2mdrun_2tests_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)']48 ········['../gromacs_2mdrunutility_2freeenergy_8cpp.xhtml',·1,·'(Global·Namespace)']
49 ····]],49 ····]],
50 ····['freeenergy_2eh_40',·['freeenergy.h',·['../freeenergy_8h.xhtml',·1,·'']]],50 ····['freeenergy_2eh_40',·['freeenergy.h',·['../freeenergy_8h.xhtml',·1,·'']]],
51 ····['freeenergydispatch_2eh_41',·['freeenergydispatch.h',·['../freeenergydispatch_8h.xhtml',·1,·'']]],51 ····['freeenergydispatch_2eh_41',·['freeenergydispatch.h',·['../freeenergydispatch_8h.xhtml',·1,·'']]],
52 ····['freeenergyparameters_2ecpp_42',·['freeenergyparameters.cpp',·['../tests_2freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)'],52 ····['freeenergyparameters_2ecpp_42',·['freeenergyparameters.cpp',·['../tests_2freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)'],
53 ········['../freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)']53 ········['../freeenergyparameters_8cpp.xhtml',·1,·'(Global·Namespace)']
54 ····]],54 ····]],
55 ····['freeenergyparameters_2eh_43',·['freeenergyparameters.h',·['../freeenergyparameters_8h.xhtml',·1,·'']]],55 ····['freeenergyparameters_2eh_43',·['freeenergyparameters.h',·['../freeenergyparameters_8h.xhtml',·1,·'']]],
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4 ····['haloexchange_2ecpp_2',·['haloexchange.cpp',·['../haloexchange_8cpp.xhtml',·1,·'']]],4 ····['haloexchange_2ecpp_2',·['haloexchange.cpp',·['../haloexchange_8cpp.xhtml',·1,·'']]],
5 ····['haloexchange_2eh_3',·['haloexchange.h',·['../haloexchange_8h.xhtml',·1,·'']]],5 ····['haloexchange_2eh_3',·['haloexchange.h',·['../haloexchange_8h.xhtml',·1,·'']]],
6 ····['haloexchange_5fmpi_2ecpp_4',·['haloexchange_mpi.cpp',·['../haloexchange__mpi_8cpp.xhtml',·1,·'']]],6 ····['haloexchange_5fmpi_2ecpp_4',·['haloexchange_mpi.cpp',·['../haloexchange__mpi_8cpp.xhtml',·1,·'']]],
7 ····['haloexchangesetup_2ecpp_5',·['haloexchangesetup.cpp',·['../haloexchangesetup_8cpp.xhtml',·1,·'']]],7 ····['haloexchangesetup_2ecpp_5',·['haloexchangesetup.cpp',·['../haloexchangesetup_8cpp.xhtml',·1,·'']]],
8 ····['handlerestart_2ecpp_6',·['handlerestart.cpp',·['../handlerestart_8cpp.xhtml',·1,·'']]],8 ····['handlerestart_2ecpp_6',·['handlerestart.cpp',·['../handlerestart_8cpp.xhtml',·1,·'']]],
9 ····['handlerestart_2eh_7',·['handlerestart.h',·['../handlerestart_8h.xhtml',·1,·'']]],9 ····['handlerestart_2eh_7',·['handlerestart.h',·['../handlerestart_8h.xhtml',·1,·'']]],
10 ····['hardwaretopology_2ecpp_8',·['hardwaretopology.cpp',·['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'],10 ····['hardwaretopology_2ecpp_8',·['hardwaretopology.cpp',·['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'],
11 ········['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']11 ········['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']
12 ····]],12 ····]],
13 ····['hardwaretopology_2eh_9',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],13 ····['hardwaretopology_2eh_9',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]],
14 ····['hashedmap_2ecpp_10',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],14 ····['hashedmap_2ecpp_10',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],
15 ····['hashedmap_2eh_11',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],15 ····['hashedmap_2eh_11',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],
16 ····['hbond_2ecpp_12',·['hbond.cpp',·['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],16 ····['hbond_2ecpp_12',·['hbond.cpp',·['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],
17 ········['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']17 ········['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']
18 ····]],18 ····]],
19 ····['hbond_2eh_13',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],19 ····['hbond_2eh_13',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],
20 ····['helpformat_2ecpp_14',·['helpformat.cpp',·['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['helpformat_2ecpp_14',·['helpformat.cpp',·['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['helpformat_2eh_15',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],23 ····['helpformat_2eh_15',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],
24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
25 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']25 ········['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
26 ····]],26 ····]],
27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],
34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],
38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],
39 ····['histogram_2ecpp_25',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],39 ····['histogram_2ecpp_25',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
40 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']40 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['histogram_2eh_26',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],42 ····['histogram_2eh_26',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],
43 ····['histogramsize_2ecpp_27',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],43 ····['histogramsize_2ecpp_27',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],
44 ····['histogramsize_2eh_28',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],44 ····['histogramsize_2eh_28',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],
45 ····['hostallocator_2ecpp_29',·['hostallocator.cpp',·['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],45 ····['hostallocator_2ecpp_29',·['hostallocator.cpp',·['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
46 ········['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']46 ········['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
47 ····]],47 ····]],
48 ····['hostallocator_2eh_30',·['hostallocator.h',·['../hostallocator_8h.xhtml',·1,·'']]],48 ····['hostallocator_2eh_30',·['hostallocator.h',·['../hostallocator_8h.xhtml',·1,·'']]],
49 ····['hsimd_5fdeclarations_2eh_31',·['hsimd_declarations.h',·['../hsimd__declarations_8h.xhtml',·1,·'']]]49 ····['hsimd_5fdeclarations_2eh_31',·['hsimd_declarations.h',·['../hsimd__declarations_8h.xhtml',·1,·'']]]
50 ];50 ];
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3 ····['makebondedlinks_2ecpp_1',·['makebondedlinks.cpp',·['../makebondedlinks_8cpp.xhtml',·1,·'']]],3 ····['makebondedlinks_2ecpp_1',·['makebondedlinks.cpp',·['../makebondedlinks_8cpp.xhtml',·1,·'']]],
4 ····['makebondedlinks_2eh_2',·['makebondedlinks.h',·['../makebondedlinks_8h.xhtml',·1,·'']]],4 ····['makebondedlinks_2eh_2',·['makebondedlinks.h',·['../makebondedlinks_8h.xhtml',·1,·'']]],
5 ····['makeconstraints_2eh_3',·['makeconstraints.h',·['../makeconstraints_8h.xhtml',·1,·'']]],5 ····['makeconstraints_2eh_3',·['makeconstraints.h',·['../makeconstraints_8h.xhtml',·1,·'']]],
6 ····['manage_5fthreading_2ecpp_4',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],6 ····['manage_5fthreading_2ecpp_4',·['manage_threading.cpp',·['../manage__threading_8cpp.xhtml',·1,·'']]],
7 ····['manage_5fthreading_2eh_5',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],7 ····['manage_5fthreading_2eh_5',·['manage_threading.h',·['../manage__threading_8h.xhtml',·1,·'']]],
8 ····['manager_2ecpp_6',·['manager.cpp',·['../manager_8cpp.xhtml',·1,·'']]],8 ····['manager_2ecpp_6',·['manager.cpp',·['../manager_8cpp.xhtml',·1,·'']]],
9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],
10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],
11 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']11 ········['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']
12 ····]],12 ····]],
13 ····['manyautocorrelation_2eh_9',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],13 ····['manyautocorrelation_2eh_9',·['manyautocorrelation.h',·['../manyautocorrelation_8h.xhtml',·1,·'']]],
14 ····['matio_2ecpp_10',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],14 ····['matio_2ecpp_10',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],
15 ····['matrix_2ecpp_11',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],15 ····['matrix_2ecpp_11',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],
16 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']16 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']
17 ····]],17 ····]],
18 ····['matrix_2eh_12',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],18 ····['matrix_2eh_12',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],
Offset 36, 16 lines modifiedOffset 36, 16 lines modified
36 ····['mdspan_2eh_30',·['mdspan.h',·['../mdspan_8h.xhtml',·1,·'']]],36 ····['mdspan_2eh_30',·['mdspan.h',·['../mdspan_8h.xhtml',·1,·'']]],
37 ····['mempool_2ecpp_31',·['mempool.cpp',·['../mempool_8cpp.xhtml',·1,·'']]],37 ····['mempool_2ecpp_31',·['mempool.cpp',·['../mempool_8cpp.xhtml',·1,·'']]],
38 ····['mempool_2eh_32',·['mempool.h',·['../mempool_8h.xhtml',·1,·'']]],38 ····['mempool_2eh_32',·['mempool.h',·['../mempool_8h.xhtml',·1,·'']]],
39 ····['message_5fstring_5fcollector_2ecpp_33',·['message_string_collector.cpp',·['../tests_2message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)'],39 ····['message_5fstring_5fcollector_2ecpp_33',·['message_string_collector.cpp',·['../tests_2message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)'],
40 ········['../message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)']40 ········['../message__string__collector_8cpp.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['message_5fstring_5fcollector_2eh_34',·['message_string_collector.h',·['../message__string__collector_8h.xhtml',·1,·'']]],42 ····['message_5fstring_5fcollector_2eh_34',·['message_string_collector.h',·['../message__string__collector_8h.xhtml',·1,·'']]],
43 ····['mimic_2ecpp_35',·['mimic.cpp',·['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['mimic_2ecpp_35',·['mimic.cpp',·['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../gromacs_2mdrun_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../programs_2mdrun_2tests_2mimic_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['minimize_2ecpp_36',·['minimize.cpp',·['../programs_2mdrun_2tests_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)'],46 ····['minimize_2ecpp_36',·['minimize.cpp',·['../programs_2mdrun_2tests_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)'],
47 ········['../gromacs_2mdrun_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)']47 ········['../gromacs_2mdrun_2minimize_8cpp.xhtml',·1,·'(Global·Namespace)']
48 ····]],48 ····]],
49 ····['misc_2ecpp_37',·['misc.cpp',·['../misc_8cpp.xhtml',·1,·'']]],49 ····['misc_2ecpp_37',·['misc.cpp',·['../misc_8cpp.xhtml',·1,·'']]],
50 ····['mock_5fdatamodule_2ecpp_38',·['mock_datamodule.cpp',·['../mock__datamodule_8cpp.xhtml',·1,·'']]],50 ····['mock_5fdatamodule_2ecpp_38',·['mock_datamodule.cpp',·['../mock__datamodule_8cpp.xhtml',·1,·'']]],
51 ····['mock_5fdatamodule_2eh_39',·['mock_datamodule.h',·['../mock__datamodule_8h.xhtml',·1,·'']]],51 ····['mock_5fdatamodule_2eh_39',·['mock_datamodule.h',·['../mock__datamodule_8h.xhtml',·1,·'']]],
Offset 53, 40 lines modifiedOffset 53, 40 lines modified
53 ····['mock_5fhelptopic_2eh_41',·['mock_helptopic.h',·['../mock__helptopic_8h.xhtml',·1,·'']]],53 ····['mock_5fhelptopic_2eh_41',·['mock_helptopic.h',·['../mock__helptopic_8h.xhtml',·1,·'']]],
54 ····['mockhardwaretopology_2ecpp_42',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],54 ····['mockhardwaretopology_2ecpp_42',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],
55 ····['modularsimulator_2ecpp_43',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],55 ····['modularsimulator_2ecpp_43',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],
56 ····['modularsimulator_2eh_44',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],56 ····['modularsimulator_2eh_44',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],
57 ····['modularsimulatorinterfaces_2eh_45',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],57 ····['modularsimulatorinterfaces_2eh_45',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],
58 ····['modules_2ecpp_46',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],58 ····['modules_2ecpp_46',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],
59 ····['modules_2eh_47',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],59 ····['modules_2eh_47',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],
60 ····['moduletest_2ecpp_48',·['moduletest.cpp',·['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],60 ····['moduletest_2ecpp_48',·['moduletest.cpp',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],
61 ········['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']61 ········['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']
62 ····]],62 ····]],
63 ····['moduletest_2eh_49',·['moduletest.h',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],63 ····['moduletest_2eh_49',·['moduletest.h',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],
64 ········['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']64 ········['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']
65 ····]],65 ····]],
66 ····['mp11_2eh_50',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],66 ····['mp11_2eh_50',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],
67 ····['mpi_5fprinter_2eh_51',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],67 ····['mpi_5fprinter_2eh_51',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],
68 ····['mpitest_2ecpp_52',·['mpitest.cpp',·['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],68 ····['mpitest_2ecpp_52',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
69 ········['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']69 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
70 ····]],70 ····]],
71 ····['mpitest_2eh_53',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],71 ····['mpitest_2eh_53',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
72 ····['mrcdensitymap_2ecpp_54',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],72 ····['mrcdensitymap_2ecpp_54',·['mrcdensitymap.cpp',·['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
73 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']73 ········['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
74 ····]],74 ····]],
75 ····['mrcdensitymap_2eh_55',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],75 ····['mrcdensitymap_2eh_55',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
76 ····['mrcdensitymapheader_2ecpp_56',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['mrcdensitymapheader_2ecpp_56',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['mrcdensitymapheader_2eh_57',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],79 ····['mrcdensitymapheader_2eh_57',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],
80 ····['mrcserializer_2ecpp_58',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],80 ····['mrcserializer_2ecpp_58',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
81 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']81 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']
82 ····]],82 ····]],
83 ····['mrcserializer_2eh_59',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],83 ····['mrcserializer_2eh_59',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],
84 ····['msd_2ecpp_60',·['msd.cpp',·['../tests_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],84 ····['msd_2ecpp_60',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],
85 ········['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)']85 ········['../tests_2msd_8cpp.xhtml',·1,·'(Global·Namespace)']
86 ····]],86 ····]],
87 ····['msd_2eh_61',·['msd.h',·['../msd_8h.xhtml',·1,·'']]],87 ····['msd_2eh_61',·['msd.h',·['../msd_8h.xhtml',·1,·'']]],
88 ····['mshift_2ecpp_62',·['mshift.cpp',·['../tests_2mshift_8cpp.xhtml',·1,·'']]],88 ····['mshift_2ecpp_62',·['mshift.cpp',·['../tests_2mshift_8cpp.xhtml',·1,·'']]],
89 ····['mtop_2ecpp_63',·['mtop.cpp',·['../mtop_8cpp.xhtml',·1,·'']]],89 ····['mtop_2ecpp_63',·['mtop.cpp',·['../mtop_8cpp.xhtml',·1,·'']]],
90 ····['mtop_5fatomloops_2eh_64',·['mtop_atomloops.h',·['../mtop__atomloops_8h.xhtml',·1,·'']]],90 ····['mtop_5fatomloops_2eh_64',·['mtop_atomloops.h',·['../mtop__atomloops_8h.xhtml',·1,·'']]],
91 ····['mtop_5flookup_2eh_65',·['mtop_lookup.h',·['../mtop__lookup_8h.xhtml',·1,·'']]],91 ····['mtop_5flookup_2eh_65',·['mtop_lookup.h',·['../mtop__lookup_8h.xhtml',·1,·'']]],
92 ····['mttk_2ecpp_66',·['mttk.cpp',·['../mttk_8cpp.xhtml',·1,·'']]],92 ····['mttk_2ecpp_66',·['mttk.cpp',·['../mttk_8cpp.xhtml',·1,·'']]],
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Offset 59, 16 lines modifiedOffset 59, 16 lines modified
59 ····['nbsearch_2eh_55',·['nbsearch.h',·['../nbsearch_8h.xhtml',·1,·'']]],59 ····['nbsearch_2eh_55',·['nbsearch.h',·['../nbsearch_8h.xhtml',·1,·'']]],
60 ····['neldermead_2ecpp_56',·['neldermead.cpp',·['../neldermead_8cpp.xhtml',·1,·'(Global·Namespace)'],60 ····['neldermead_2ecpp_56',·['neldermead.cpp',·['../neldermead_8cpp.xhtml',·1,·'(Global·Namespace)'],
61 ········['../tests_2neldermead_8cpp.xhtml',·1,·'(Global·Namespace)']61 ········['../tests_2neldermead_8cpp.xhtml',·1,·'(Global·Namespace)']
62 ····]],62 ····]],
63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],
64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
Offset 78, 16 lines modifiedOffset 78, 16 lines modified
78 ····]],78 ····]],
79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
82 ····]],82 ····]],
83 ····['nnpottopologypreprocessor_2eh_69',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],83 ····['nnpottopologypreprocessor_2eh_69',·['nnpottopologypreprocessor.h',·['../nnpottopologypreprocessor_8h.xhtml',·1,·'']]],
84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],
85 ····['nonbonded_5fbench_2ecpp_71',·['nonbonded_bench.cpp',·['../nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)'],85 ····['nonbonded_5fbench_2ecpp_71',·['nonbonded_bench.cpp',·['../tests_2nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)'],
86 ········['../tests_2nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)']86 ········['../nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)']
87 ····]],87 ····]],
88 ····['nonbonded_5fbench_2eh_72',·['nonbonded_bench.h',·['../nonbonded__bench_8h.xhtml',·1,·'']]],88 ····['nonbonded_5fbench_2eh_72',·['nonbonded_bench.h',·['../nonbonded__bench_8h.xhtml',·1,·'']]],
89 ····['normaldistribution_2ecpp_73',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]],89 ····['normaldistribution_2ecpp_73',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]],
90 ····['normaldistribution_2eh_74',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]],90 ····['normaldistribution_2eh_74',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]],
91 ····['normalmodes_2ecpp_75',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],91 ····['normalmodes_2ecpp_75',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]],
92 ····['nosehooverchains_2ecpp_76',·['nosehooverchains.cpp',·['../nosehooverchains_8cpp.xhtml',·1,·'']]],92 ····['nosehooverchains_2ecpp_76',·['nosehooverchains.cpp',·['../nosehooverchains_8cpp.xhtml',·1,·'']]],
93 ····['nosehooverchains_2eh_77',·['nosehooverchains.h',·['../nosehooverchains_8h.xhtml',·1,·'']]],93 ····['nosehooverchains_2eh_77',·['nosehooverchains.h',·['../nosehooverchains_8h.xhtml',·1,·'']]],
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js-beautify {}
    
Offset 1, 12 lines modifiedOffset 1, 12 lines modified
1 var·searchData·=·[1 var·searchData·=·[
2 ····['paddedvector_2ecpp_0',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],2 ····['paddedvector_2ecpp_0',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
3 ····['paddedvector_2eh_1',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],3 ····['paddedvector_2eh_1',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
4 ····['pairdist_2ecpp_2',·['pairdist.cpp',·['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],4 ····['pairdist_2ecpp_2',·['pairdist.cpp',·['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],
5 ········['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']5 ········['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']
6 ····]],6 ····]],
7 ····['pairdist_2eh_3',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],7 ····['pairdist_2eh_3',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
8 ····['pairlist_2ecpp_4',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],8 ····['pairlist_2ecpp_4',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],
9 ····['pairlist_5fimask_2eh_5',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],9 ····['pairlist_5fimask_2eh_5',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],
10 ····['pairlist_5fsimd_5fkernel_2ecpp_6',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],10 ····['pairlist_5fsimd_5fkernel_2ecpp_6',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],
11 ····['pairlist_5fsimd_5fkernel_2eh_7',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],11 ····['pairlist_5fsimd_5fkernel_2eh_7',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],
12 ····['pairlist_5ftuning_2ecpp_8',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],12 ····['pairlist_5ftuning_2ecpp_8',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
Offset 31, 27 lines modifiedOffset 31, 27 lines modified
31 ····['parrinellorahmanbarostat_2ecpp_25',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],31 ····['parrinellorahmanbarostat_2ecpp_25',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]],
32 ····['parrinellorahmanbarostat_2eh_26',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],32 ····['parrinellorahmanbarostat_2eh_26',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]],
33 ····['parser_5finternal_2eh_27',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],33 ····['parser_5finternal_2eh_27',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]],
34 ····['parsetree_2ecpp_28',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],34 ····['parsetree_2ecpp_28',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]],
35 ····['parsetree_2eh_29',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],35 ····['parsetree_2eh_29',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]],
36 ····['partition_2ecpp_30',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],36 ····['partition_2ecpp_30',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]],
37 ····['partition_2eh_31',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],37 ····['partition_2eh_31',·['partition.h',·['../partition_8h.xhtml',·1,·'']]],
38 ····['path_2ecpp_32',·['path.cpp',·['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['path_2ecpp_32',·['path.cpp',·['../path_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../path_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['path_2eh_33',·['path.h',·['../path_8h.xhtml',·1,·'']]],41 ····['path_2eh_33',·['path.h',·['../path_8h.xhtml',·1,·'']]],
42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],
48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],
49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],
50 ········['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']50 ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']
51 ····]],51 ····]],
52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],
53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],
54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],
55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],
56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],
57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],
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74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],
75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],
76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],
77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],
80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
81 ····['pme_2ecpp_67',·['pme.cpp',·['../pme_8cpp.xhtml',·1,·'(Global·Namespace)'],81 ····['pme_2ecpp_67',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
82 ········['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)']82 ········['../pme_8cpp.xhtml',·1,·'(Global·Namespace)']
83 ····]],83 ····]],
84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],
85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],
86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],
87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],
88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],
89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],
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153 ····['polynomials_2eh_137',·['polynomials.h',·['../polynomials_8h.xhtml',·1,·'']]],153 ····['polynomials_2eh_137',·['polynomials.h',·['../polynomials_8h.xhtml',·1,·'']]],
154 ····['poscalc_2ecpp_138',·['poscalc.cpp',·['../tests_2poscalc_8cpp.xhtml',·1,·'(Global·Namespace)'],154 ····['poscalc_2ecpp_138',·['poscalc.cpp',·['../tests_2poscalc_8cpp.xhtml',·1,·'(Global·Namespace)'],
155 ········['../poscalc_8cpp.xhtml',·1,·'(Global·Namespace)']155 ········['../poscalc_8cpp.xhtml',·1,·'(Global·Namespace)']
156 ····]],156 ····]],
157 ····['poscalc_2eh_139',·['poscalc.h',·['../poscalc_8h.xhtml',·1,·'']]],157 ····['poscalc_2eh_139',·['poscalc.h',·['../poscalc_8h.xhtml',·1,·'']]],
158 ····['position_2ecpp_140',·['position.cpp',·['../position_8cpp.xhtml',·1,·'']]],158 ····['position_2ecpp_140',·['position.cpp',·['../position_8cpp.xhtml',·1,·'']]],
159 ····['position_2eh_141',·['position.h',·['../position_8h.xhtml',·1,·'']]],159 ····['position_2eh_141',·['position.h',·['../position_8h.xhtml',·1,·'']]],
160 ····['position_5frestraints_2ecpp_142',·['position_restraints.cpp',·['../tests_2position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)'],160 ····['position_5frestraints_2ecpp_142',·['position_restraints.cpp',·['../position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)'],
161 ········['../position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)']161 ········['../tests_2position__restraints_8cpp.xhtml',·1,·'(Global·Namespace)']
162 ····]],162 ····]],
163 ····['position_5frestraints_2eh_143',·['position_restraints.h',·['../position__restraints_8h.xhtml',·1,·'']]],163 ····['position_5frestraints_2eh_143',·['position_restraints.h',·['../position__restraints_8h.xhtml',·1,·'']]],
164 ····['printtime_2eh_144',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],164 ····['printtime_2eh_144',·['printtime.h',·['../printtime_8h.xhtml',·1,·'']]],
165 ····['programcontext_2ecpp_145',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],165 ····['programcontext_2ecpp_145',·['programcontext.cpp',·['../programcontext_8cpp.xhtml',·1,·'']]],
166 ····['programcontext_2eh_146',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],166 ····['programcontext_2eh_146',·['programcontext.h',·['../programcontext_8h.xhtml',·1,·'']]],
167 ····['propagator_2ecpp_147',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],167 ····['propagator_2ecpp_147',·['propagator.cpp',·['../propagator_8cpp.xhtml',·1,·'']]],
168 ····['propagator_2eh_148',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],168 ····['propagator_2eh_148',·['propagator.h',·['../propagator_8h.xhtml',·1,·'']]],
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3 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']3 ········['../qmmm_8cpp.xhtml',·1,·'(Global·Namespace)']
4 ····]],4 ····]],
5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
7 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']7 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
8 ····]],8 ····]],
9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
13 ····]],13 ····]],
14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
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477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>
478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>
479 </dd>479 </dd>
480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>
481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>
482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>
483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>
484 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>484 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>
485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>
486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>
487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>
488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>
489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>
490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>
491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>
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565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>
566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>
567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>
569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>
570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>
571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
572 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>572 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>
573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>
574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>
575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>
576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>
577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>
578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>
579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>
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595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],
596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],
598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
 602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'],
602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],603 ········['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()']
603 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'] 
604 ····]],604 ····]],
 605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'],
605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],606 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']
606 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] 
607 ····]],607 ····]],
 608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'],
608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],609 ········['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()']
609 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'] 
610 ····]],610 ····]],
611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
613 ····]],613 ····]],
614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],
615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],
616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],
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618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],
620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],
621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],
622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],
623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],
624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],
 625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'],
625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()'],626 ········['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()']
626 ········['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'] 
627 ····]],627 ····]],
628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],
629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']
630 ····]],630 ····]],
631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],
632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']
633 ····]],633 ····]],
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23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],
24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
29 ····['unitvector_21',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'], 
30 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']29 ····['unitvector_21',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
 30 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']
31 ····]],31 ····]],
32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],
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35 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h']34 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
 35 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown']
36 ····]],36 ····]],
37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
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41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
42 ····['update_29',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],42 ····['update_29',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],
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43 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],44 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()']
44 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'] 
45 ····]],45 ····]],
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47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],
48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],
49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],
50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],
51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],
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68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],
69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']
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72 ····['updatehistory_51',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'], 
73 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()']72 ····['updatehistory_51',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],
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74 ····]],74 ····]],
75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],
76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],
77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],
78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],
79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],
80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],
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35 ····]],35 ····]],
36 ····['fepstatevalue_3c_20nameholder_20_3e_23',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],36 ····['fepstatevalue_3c_20nameholder_20_3e_23',·['FEPStateValue&lt;·NameHolder·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
37 ····['fepstatevalue_3c_20real_20_3e_24',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],37 ····['fepstatevalue_3c_20real_20_3e_24',·['FEPStateValue&lt;·real·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
38 ····['fepstatevalue_3c_20unsigned_20short_20_3e_25',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],38 ····['fepstatevalue_3c_20unsigned_20short_20_3e_25',·['FEPStateValue&lt;·unsigned·short·&gt;',·['../structFEPStateValue.xhtml',·1,·'']]],
39 ····['fetchcoulombforcer_26',·['fetchCoulombForceR',·['../namespacegmx.xhtml#af4358df7df7ec8c2d2ad3014049c9ff0',·1,·'gmx']]],39 ····['fetchcoulombforcer_26',·['fetchCoulombForceR',·['../namespacegmx.xhtml#af4358df7df7ec8c2d2ad3014049c9ff0',·1,·'gmx']]],
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41 ····['fetchnextevent_28',·['fetchnextevent',·['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()'], 
42 ········['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()']41 ····['fetchnextevent_28',·['fetchnextevent',·['../classGpuRegionTimerWrapper.xhtml#ae595ce381d09845166643647caf6b539',·1,·'GpuRegionTimerWrapper::fetchNextEvent()'],
 42 ········['../classGpuRegionTimerImpl.xhtml#ace9b9965e5b0dec64d5d74af36035a63',·1,·'GpuRegionTimerImpl::fetchNextEvent()']
43 ····]],43 ····]],
44 ····['ffallow_5fmissing_29',·['ffALLOW_MISSING',·['../group__module__commandline.xhtml#gaae8f2f42809cc00c087b4359507abb81',·1,·'filenm.h']]],44 ····['ffallow_5fmissing_29',·['ffALLOW_MISSING',·['../group__module__commandline.xhtml#gaae8f2f42809cc00c087b4359507abb81',·1,·'filenm.h']]],
45 ····['fflib_30',·['ffLIB',·['../group__module__commandline.xhtml#gabcfe164407bc1fff8164f4779f0fe3ce',·1,·'filenm.h']]],45 ····['fflib_30',·['ffLIB',·['../group__module__commandline.xhtml#gabcfe164407bc1fff8164f4779f0fe3ce',·1,·'filenm.h']]],
46 ····['ffliboptrd_31',·['ffLIBOPTRD',·['../group__module__commandline.xhtml#gaa168a891bb48ca53f62f04697add97f4',·1,·'filenm.h']]],46 ····['ffliboptrd_31',·['ffLIBOPTRD',·['../group__module__commandline.xhtml#gaa168a891bb48ca53f62f04697add97f4',·1,·'filenm.h']]],
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48 ····['ffmult_33',·['ffMULT',·['../group__module__commandline.xhtml#ga50cb2de9aec8429fb44074a1bfdb19b2',·1,·'filenm.h']]],48 ····['ffmult_33',·['ffMULT',·['../group__module__commandline.xhtml#ga50cb2de9aec8429fb44074a1bfdb19b2',·1,·'filenm.h']]],
49 ····['ffopt_34',·['ffOPT',·['../group__module__commandline.xhtml#ga070f4190c2bc4a6af08333851ddf42ac',·1,·'filenm.h']]],49 ····['ffopt_34',·['ffOPT',·['../group__module__commandline.xhtml#ga070f4190c2bc4a6af08333851ddf42ac',·1,·'filenm.h']]],
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349 ····]],349 ····]],
350 ····['forcemtscombined_201',·['forcemtscombined',·['../classgmx_1_1ForceBuffersView.xhtml#a166f7af032d4e40035ffec7b665ed572',·1,·'gmx::ForceBuffersView::forceMtsCombined()·const'],350 ····['forcemtscombined_201',·['forcemtscombined',·['../classgmx_1_1ForceBuffersView.xhtml#a166f7af032d4e40035ffec7b665ed572',·1,·'gmx::ForceBuffersView::forceMtsCombined()·const'],
351 ········['../classgmx_1_1ForceBuffersView.xhtml#a6c291c3c289aecea56104b7e79325558',·1,·'gmx::ForceBuffersView::forceMtsCombined()']351 ········['../classgmx_1_1ForceBuffersView.xhtml#a6c291c3c289aecea56104b7e79325558',·1,·'gmx::ForceBuffersView::forceMtsCombined()']
352 ····]],352 ····]],
353 ····['forcemtscombinedwithpadding_202',·['forceMtsCombinedWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a297d8a01836b387a5ab1be510aed44fa',·1,·'gmx::ForceBuffersView']]],353 ····['forcemtscombinedwithpadding_202',·['forceMtsCombinedWithPadding',·['../classgmx_1_1ForceBuffersView.xhtml#a297d8a01836b387a5ab1be510aed44fa',·1,·'gmx::ForceBuffersView']]],
354 ····['forceoutput_2eh_203',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],354 ····['forceoutput_2eh_203',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],
355 ····['forceoutputs_204',·['forceoutputs',·['../classgmx_1_1ForceOutputs.xhtml',·1,·'gmx::ForceOutputs'], 
356 ········['../classgmx_1_1ForceOutputs.xhtml#abd589c42af0e81e787dd76f03d020187',·1,·'gmx::ForceOutputs::ForceOutputs()']355 ····['forceoutputs_204',·['forceoutputs',·['../classgmx_1_1ForceOutputs.xhtml#abd589c42af0e81e787dd76f03d020187',·1,·'gmx::ForceOutputs::ForceOutputs()'],
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358 ····['forceparam_205',·['forceparam',·['../classInteractionOfType.xhtml#a6baea034eb73978879f0a9d1fe80d938',·1,·'InteractionOfType::forceParam()'], 
359 ········['../classInteractionOfType.xhtml#a9377381fa12dd22697c3e1b256cd8cf3',·1,·'InteractionOfType::forceParam()·const']358 ····['forceparam_205',·['forceparam',·['../classInteractionOfType.xhtml#a9377381fa12dd22697c3e1b256cd8cf3',·1,·'InteractionOfType::forceParam()·const'],
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361 ····['forceproviderinput_206',·['forceproviderinput',·['../classgmx_1_1ForceProviderInput.xhtml#a2f7907d0aae391014935b848ac4f3561',·1,·'gmx::ForceProviderInput::ForceProviderInput()'],361 ····['forceproviderinput_206',·['forceproviderinput',·['../classgmx_1_1ForceProviderInput.xhtml#a2f7907d0aae391014935b848ac4f3561',·1,·'gmx::ForceProviderInput::ForceProviderInput()'],
362 ········['../classgmx_1_1ForceProviderInput.xhtml',·1,·'gmx::ForceProviderInput']362 ········['../classgmx_1_1ForceProviderInput.xhtml',·1,·'gmx::ForceProviderInput']
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365 ········['../classgmx_1_1ForceProviderOutput.xhtml',·1,·'gmx::ForceProviderOutput']365 ········['../classgmx_1_1ForceProviderOutput.xhtml',·1,·'gmx::ForceProviderOutput']
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84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],
85 ····['refid_57',·['refid',·['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid'],85 ····['refid_57',·['refid',·['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid'],
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89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
90 ····['register_2ecpp_60',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],90 ····['register_2ecpp_60',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
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95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],
97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],
98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],
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Offset 2, 29 lines modifiedOffset 2, 29 lines modified
2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],
3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],
4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],
5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],
6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']
7 ····]],7 ····]],
8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],
9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()'],
10 ········['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(const·param_type·&amp;param)'],10 ········['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],
11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(result_type·a=0.0,·result_type·b=1.0)']11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()']
12 ····]],12 ····]],
13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],
14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],
15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
22 ····['unitvector_14',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'], 
23 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']22 ····['unitvector_14',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
 23 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']
24 ····]],24 ····]],
25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],
27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
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Offset 76313, 19 lines modifiedOffset 76313, 19 lines modified
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76314 ······<name>main</name>76314 ······<name>main</name>
76315 ····</member>76315 ····</member>
76316 ··</compound>76316 ··</compound>
76317 ··<compound·refid="abstractdata_8cpp"·kind="file">76317 ··<compound·refid="abstractdata_8cpp"·kind="file">
76318 ····<name>abstractdata.cpp</name>76318 ····<name>abstractdata.cpp</name>
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76320 ··<compound·refid="analysisdata_8cpp"·kind="file">76320 ··<compound·refid="arraydata_8cpp"·kind="file">
76321 ····<name>analysisdata.cpp</name>76321 ····<name>arraydata.cpp</name>
76322 ··</compound>76322 ··</compound>
76323 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">76323 ··<compound·refid="tests_2arraydata_8cpp"·kind="file">
76324 ····<name>analysisdata.cpp</name>76324 ····<name>arraydata.cpp</name>
76325 ··</compound>76325 ··</compound>
76326 ··<compound·refid="dataframe_8cpp"·kind="file">76326 ··<compound·refid="dataframe_8cpp"·kind="file">
76327 ····<name>dataframe.cpp</name>76327 ····<name>dataframe.cpp</name>
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76329 ··<compound·refid="datamodule_8cpp"·kind="file">76329 ··<compound·refid="datamodule_8cpp"·kind="file">
76330 ····<name>datamodule.cpp</name>76330 ····<name>datamodule.cpp</name>
76331 ··</compound>76331 ··</compound>
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76346 ··</compound>76346 ··</compound>
76347 ··<compound·refid="datastorage_8h"·kind="file">76347 ··<compound·refid="datastorage_8h"·kind="file">
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76359 ··<compound·refid="frameaverager_8h"·kind="file">76365 ··<compound·refid="frameaverager_8h"·kind="file">
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76362 ··<compound·refid="plot_8cpp"·kind="file">76380 ··<compound·refid="plot_8cpp"·kind="file">
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76365 ··<compound·refid="paralleloptions_8h"·kind="file">76383 ··<compound·refid="paralleloptions_8h"·kind="file">
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76368 ··<compound·refid="arraydata_8cpp"·kind="file">76386 ··<compound·refid="analysisdata_8cpp"·kind="file">
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76371 ··<compound·refid="tests_2arraydata_8cpp"·kind="file"> 
76372 ····<name>arraydata.cpp</name> 
76373 ··</compound> 
76374 ··<compound·refid="modules_2average_8cpp"·kind="file"> 
76375 ····<name>average.cpp</name> 
76376 ··</compound>76388 ··</compound>
76377 ··<compound·refid="tests_2average_8cpp"·kind="file">76389 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">
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76380 ··<compound·refid="datatest_8cpp"·kind="file">76392 ··<compound·refid="datatest_8cpp"·kind="file">
76381 ····<name>datatest.cpp</name>76393 ····<name>datatest.cpp</name>
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76383 ··<compound·refid="datatest_8h"·kind="file">76395 ··<compound·refid="datatest_8h"·kind="file">
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76386 ··<compound·refid="modules_2histogram_8cpp"·kind="file"> 
76387 ····<name>histogram.cpp</name> 
76388 ··</compound> 
76389 ··<compound·refid="tests_2histogram_8cpp"·kind="file"> 
76390 ····<name>histogram.cpp</name> 
76391 ··</compound> 
76392 ··<compound·refid="modules_2lifetime_8cpp"·kind="file"> 
76393 ····<name>lifetime.cpp</name> 
76394 ··</compound> 
76395 ··<compound·refid="tests_2lifetime_8cpp"·kind="file"> 
76396 ····<name>lifetime.cpp</name> 
76397 ··</compound> 
76398 ··<compound·refid="mock__datamodule_8cpp"·kind="file">76398 ··<compound·refid="mock__datamodule_8cpp"·kind="file">
76399 ····<name>mock_datamodule.cpp</name>76399 ····<name>mock_datamodule.cpp</name>
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76401 ··<compound·refid="mock__datamodule_8h"·kind="file">76401 ··<compound·refid="mock__datamodule_8h"·kind="file">
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76404 ··<compound·refid="awh_8cpp"·kind="file">76404 ··<compound·refid="awh_8cpp"·kind="file">
76405 ····<name>awh.cpp</name>76405 ····<name>awh.cpp</name>
76406 ··</compound>76406 ··</compound>
76407 ··<compound·refid="awh_8h"·kind="file">76407 ··<compound·refid="awh_8h"·kind="file">
76408 ····<name>awh.h</name>76408 ····<name>awh.h</name>
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76416 ··<compound·refid="biasparams_8cpp"·kind="file">76422 ··<compound·refid="biasparams_8cpp"·kind="file">
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2671 ··············(const2671 ··············(const
2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>
2673 ··············*cr,·const2673 ··············*cr,·const
2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>
2675 ··············&amp;numPmeDomains,·const2675 ··············&amp;numPmeDomains,·const
2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>
2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,
Offset 3202, 15 lines modifiedOffset 3202, 15 lines modified
3202 ··············<ndash/>3202 ··············<ndash/>
3203 ··············renaming·coefficients·to·charges·(?)3203 ··············renaming·coefficients·to·charges·(?)
3204 ············</para>3204 ············</para>
3205 ··········</listitem>3205 ··········</listitem>
3206 ··········<varlistentry>3206 ··········<varlistentry>
3207 ············<term>3207 ············<term>
3208 ··············Member3208 ··············Member
3209 ··············<ref·refid="pme_8h_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>3209 ··············<ref·refid="pme_8cpp_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>
3210 ··············(const·gmx_pme_t·*pme)3210 ··············(const·gmx_pme_t·*pme)
3211 ············</term>3211 ············</term>
3212 ··········</varlistentry>3212 ··········</varlistentry>
3213 ··········<listitem>3213 ··········<listitem>
3214 ············<para>3214 ············<para>
3215 ··············<anchor·id="todo_1_todo000025"/>3215 ··············<anchor·id="todo_1_todo000025"/>
3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.
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./usr/share/doc/gromacs/html/manual-2025.0-Debian_2025.0_2.pdf
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pdftotext {} -
    
Offset 17671, 15 lines modifiedOffset 17671, 15 lines modified
17671 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David17671 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David
17672 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten17672 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten
17673 Wolf,·Artem·Zhmurov17673 Wolf,·Artem·Zhmurov
17674 Project·leaders:·Berk·Hess,·Erik·Lindahl17674 Project·leaders:·Berk·Hess,·Erik·Lindahl
17675 ©·1991·–·2000:17675 ©·1991·–·2000:
17676 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17676 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17677 The·Netherlands.17677 The·Netherlands.
17678 ©·2001·–·2025:17678 ©·2001·–·2026:
17679 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17679 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17680 Sweden.17680 Sweden.
17681 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first17681 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first
17682 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17682 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17683 is·not·entirely·correct.17683 is·not·entirely·correct.
17684 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17684 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17685 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue17685 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue
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./usr/share/doc/gromacs/html/reference-manual/preface.html
    
Offset 4449, 15 lines modifiedOffset 4449, 15 lines modified
00011600:·792c·2055·6e69·7665·7273·6974·7920·6f66··y,·University·of00011600:·792c·2055·6e69·7665·7273·6974·7920·6f66··y,·University·of
00011610:·2047·726f·6e69·6e67·656e·2e0a·4e69·6a65···Groningen..Nije00011610:·2047·726f·6e69·6e67·656e·2e0a·4e69·6a65···Groningen..Nije
00011620:·6e62·6f72·6768·2034·2c20·3937·3437·2041··nborgh·4,·9747·A00011620:·6e62·6f72·6768·2034·2c20·3937·3437·2041··nborgh·4,·9747·A
00011630:·4720·4772·6f6e·696e·6765·6e2c·2054·6865··G·Groningen,·The00011630:·4720·4772·6f6e·696e·6765·6e2c·2054·6865··G·Groningen,·The
00011640:·204e·6574·6865·726c·616e·6473·2e3c·2f70···Netherlands.</p00011640:·204e·6574·6865·726c·616e·6473·2e3c·2f70···Netherlands.</p
00011650:·3e0a·3c2f·6469·763e·3c2f·626c·6f63·6b71··>.</div></blockq00011650:·3e0a·3c2f·6469·763e·3c2f·626c·6f63·6b71··>.</div></blockq
00011660:·756f·7465·3e0a·3c70·3ec2·a920·3230·3031··uote>.<p>..·200100011660:·756f·7465·3e0a·3c70·3ec2·a920·3230·3031··uote>.<p>..·2001
00011670:·20e2·8093·2032·3032·353a·3c2f·703e·0a3c···...·2025:</p>.<00011670:·20e2·8093·2032·3032·363a·3c2f·703e·0a3c···...·2026:</p>.<
00011680:·626c·6f63·6b71·756f·7465·3e0a·3c64·6976··blockquote>.<div00011680:·626c·6f63·6b71·756f·7465·3e0a·3c64·6976··blockquote>.<div
00011690:·3e3c·703e·5468·6520·4752·4f4d·4143·5320··><p>The·GROMACS·00011690:·3e3c·703e·5468·6520·4752·4f4d·4143·5320··><p>The·GROMACS·
000116a0:·6465·7665·6c6f·706d·656e·7420·7465·616d··development·team000116a0:·6465·7665·6c6f·706d·656e·7420·7465·616d··development·team
000116b0:·7320·6174·2074·6865·2052·6f79·616c·2049··s·at·the·Royal·I000116b0:·7320·6174·2074·6865·2052·6f79·616c·2049··s·at·the·Royal·I
000116c0:·6e73·7469·7475·7465·206f·6620·5465·6368··nstitute·of·Tech000116c0:·6e73·7469·7475·7465·206f·6620·5465·6368··nstitute·of·Tech
000116d0:·6e6f·6c6f·6779·2061·6e64·0a55·7070·7361··nology·and.Uppsa000116d0:·6e6f·6c6f·6779·2061·6e64·0a55·7070·7361··nology·and.Uppsa
000116e0:·6c61·2055·6e69·7665·7273·6974·792c·2053··la·University,·S000116e0:·6c61·2055·6e69·7665·7273·6974·792c·2053··la·University,·S
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Offset 456, 15 lines modifiedOffset 456, 15 lines modified
456 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons456 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons
457 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,457 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,
458 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov458 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
459 Project·leaders:·Berk·Hess,·Erik·Lindahl459 Project·leaders:·Berk·Hess,·Erik·Lindahl
460 ©·1991·–·2000:460 ©·1991·–·2000:
461 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.461 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
462 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.462 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
463 ©·2001·–·2025:463 ©·2001·–·2026:
464 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology464 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
465 ·····and·Uppsala·University,·Sweden.465 ·····and·Uppsala·University,·Sweden.
466 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time466 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time
467 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is467 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is
468 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not468 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
469 entirely·correct.469 entirely·correct.
470 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r470 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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./usr/share/doc/gromacs/html/searchindex.js
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Offset 11048, 15 lines modifiedOffset 11048, 15 lines modified
11048 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·370],11048 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·370],
11049 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·347,·370],11049 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·347,·370],
11050 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·370],11050 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·370],
11051 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·370],11051 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·370],
11052 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·370],11052 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·370],
11053 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·351,·352,·365],11053 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·351,·352,·365],
11054 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·348,·349,·350,·351,·352,·353,·354,·356,·357,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374],11054 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·348,·349,·350,·351,·352,·353,·354,·356,·357,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374],
11055 ········"2026":·[249,·355],11055 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66[·...·truncated·by·diffoscope;·len:·1507,·SHA:·3c23d6e313df644138a0a276f77a7d6c529a2e49bf0da8307e6764c12f0662f5·...·]],
11056 ········"2027":·249,11056 ········"2027":·249,
11057 ········"2028":·249,11057 ········"2028":·249,
11058 ········"2029":·223,11058 ········"2029":·223,
11059 ········"2031":·242,11059 ········"2031":·242,
11060 ········"2032":·[49,·193,·242],11060 ········"2032":·[49,·193,·242],
11061 ········"2033":·223,11061 ········"2033":·223,
11062 ········"2037":·[223,·239,·250],11062 ········"2037":·[223,·239,·250],
Generated by diffoscope 288