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/srv/reproducible-results/rbuild-debian/r-b-build.FwErautE/b1/salmon_1.10.2+ds1-1_arm64.changes vs.
/srv/reproducible-results/rbuild-debian/r-b-build.FwErautE/b2/salmon_1.10.2+ds1-1_arm64.changes
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1 ·3334a1a8621de8229dad538118a3cdda·41772672·debug·optional·salmon-dbgsym_1.10.2+ds1-1_arm64.deb1 ·3334a1a8621de8229dad538118a3cdda·41772672·debug·optional·salmon-dbgsym_1.10.2+ds1-1_arm64.deb
2 ·8e956420c7735600e4b2d39e7121908d·3178968·science·optional·salmon_1.10.2+ds1-1_arm64.deb2 ·ac4553d01f35a97bff06c57313293f48·3178960·science·optional·salmon_1.10.2+ds1-1_arm64.deb
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salmon_1.10.2+ds1-1_arm64.deb
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1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary1 -rw-r--r--···0········0········0········4·2023-08-16·11:09:23.000000·debian-binary
2 -rw-r--r--···0········0········0·····2468·2023-08-16·11:09:23.000000·control.tar.xz2 -rw-r--r--···0········0········0·····2468·2023-08-16·11:09:23.000000·control.tar.xz
3 -rw-r--r--···0········0········0··3176308·2023-08-16·11:09:23.000000·data.tar.xz3 -rw-r--r--···0········0········0··3176300·2023-08-16·11:09:23.000000·data.tar.xz
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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file list
    
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58 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/man/man1/58 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/man/man1/
59 -rw-r--r--···0·root·········(0)·root·········(0)·····1374·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-index.1.gz59 -rw-r--r--···0·root·········(0)·root·········(0)·····1374·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-index.1.gz
60 -rw-r--r--···0·root·········(0)·root·········(0)······530·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-quant.1.gz60 -rw-r--r--···0·root·········(0)·root·········(0)······530·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-quant.1.gz
61 -rw-r--r--···0·root·········(0)·root·········(0)······325·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-swim.1.gz61 -rw-r--r--···0·root·········(0)·root·········(0)······325·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon-swim.1.gz
62 -rw-r--r--···0·root·········(0)·root·········(0)······433·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon.1.gz62 -rw-r--r--···0·root·········(0)·root·········(0)······433·2023-08-16·11:09:23.000000·./usr/share/man/man1/salmon.1.gz
63 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/63 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/
64 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/64 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/
65 -rw-r--r--···0·root·········(0)·root·········(0)····90929·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/LastTest.log65 -rw-r--r--···0·root·········(0)·root·········(0)····90930·2023-08-16·11:09:23.000000·./usr/share/salmon/build-test-logs/LastTest.log
66 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/doctools.js·->·../../../../javascript/sphinxdoc/1.0/doctools.js66 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/doctools.js·->·../../../../javascript/sphinxdoc/1.0/doctools.js
67 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/language_data.js·->·../../../../javascript/sphinxdoc/1.0/language_data.js67 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/language_data.js·->·../../../../javascript/sphinxdoc/1.0/language_data.js
68 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/searchtools.js·->·../../../../javascript/sphinxdoc/1.0/searchtools.js68 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/searchtools.js·->·../../../../javascript/sphinxdoc/1.0/searchtools.js
69 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/sphinx_highlight.js·->·../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js69 lrwxrwxrwx···0·root·········(0)·root·········(0)········0·2023-08-16·11:09:23.000000·./usr/share/doc/salmon/html/_static/sphinx_highlight.js·->·../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js
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./usr/share/salmon/build-test-logs/LastTest.log
    
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1 Start·testing:·Apr·29·04:42·-121 Start·testing:·Mar·28·00:35·+14
2 ----------------------------------------------------------2 ----------------------------------------------------------
3 1/2·Testing:·unit_tests3 1/2·Testing:·unit_tests
4 1/2·Test:·unit_tests4 1/2·Test:·unit_tests
5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"5 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/UnitTests.cmake"
6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src6 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src
7 "unit_tests"·start·time:·Apr·29·04:42·-127 "unit_tests"·start·time:·Mar·28·00:35·+14
8 Output:8 Output:
9 ----------------------------------------------------------9 ----------------------------------------------------------
10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests10 --·For·unit·tests,·will·set·working·directory·to·/build/reproducible-path/salmon-1.10.2+ds1/tests
11 ===============================================================================11 ===============================================================================
12 All·tests·passed·(2002666·assertions·in·4·test·cases)12 All·tests·passed·(1999038·assertions·in·4·test·cases)
  
13 <end·of·output>13 <end·of·output>
14 Test·time·=···0.26·sec14 Test·time·=···0.51·sec
15 ----------------------------------------------------------15 ----------------------------------------------------------
16 Test·Passed.16 Test·Passed.
17 "unit_tests"·end·time:·Apr·29·04:42·-1217 "unit_tests"·end·time:·Mar·28·00:35·+14
18 "unit_tests"·time·elapsed:·00:00:0018 "unit_tests"·time·elapsed:·00:00:00
19 ----------------------------------------------------------19 ----------------------------------------------------------
  
20 2/2·Testing:·salmon_read_test_quasi20 2/2·Testing:·salmon_read_test_quasi
21 2/2·Test:·salmon_read_test_quasi21 2/2·Test:·salmon_read_test_quasi
22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"22 Command:·"/usr/bin/cmake"·"-DTOPLEVEL_DIR=/build/reproducible-path/salmon-1.10.2+ds1"·"-P"·"/build/reproducible-path/salmon-1.10.2+ds1/cmake/TestSalmonQuasi.cmake"
23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src23 Directory:·/build/reproducible-path/salmon-1.10.2+ds1/obj-aarch64-linux-gnu/src
24 "salmon_read_test_quasi"·start·time:·Apr·29·04:42·-1224 "salmon_read_test_quasi"·start·time:·Mar·28·00:35·+14
25 Output:25 Output:
26 ----------------------------------------------------------26 ----------------------------------------------------------
27 sample_data/27 sample_data/
28 sample_data/reads_2.fastq28 sample_data/reads_2.fastq
29 sample_data/sample_alignments.bam29 sample_data/sample_alignments.bam
30 sample_data/transcripts.fasta30 sample_data/transcripts.fasta
31 sample_data/reads_1.fastq31 sample_data/reads_1.fastq
32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it32 index·["sample_salmon_quasi_index"]·did·not·previously·exist··.·.·.·creating·it
33 [2026-04-29·04:42:34.212]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.33 [2025-03-28·00:35:47.914]·[jLog]·[warning]·The·salmon·index·is·being·built·without·any·decoy·sequences.··It·is·recommended·that·decoy·sequence·(either·computed·auxiliary·decoy·sequence·or·the·genome·of·the·organism)·be·provided·during·indexing.·Further·details·can·be·found·at·https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.
34 [2026-04-29·04:42:34.212]·[jLog]·[info]·building·index34 [2025-03-28·00:35:47.914]·[jLog]·[info]·building·index
35 out·:·sample_salmon_quasi_index35 out·:·sample_salmon_quasi_index
36 [2026-04-29·04:42:34.212]·[puff::index::jointLog]·[info]·Running·fixFasta36 [2025-03-28·00:35:47.915]·[puff::index::jointLog]·[info]·Running·fixFasta
  
37 [Step·1·of·4]·:·counting·k-mers37 [Step·1·of·4]·:·counting·k-mers
  
38 [2026-04-29·04:42:34.217]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides38 [2025-03-28·00:35:47.926]·[puff::index::jointLog]·[info]·Replaced·0·non-ATCG·nucleotides
39 [2026-04-29·04:42:34.217]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts39 [2025-03-28·00:35:47.926]·[puff::index::jointLog]·[info]·Clipped·poly-A·tails·from·0·transcripts
40 wrote·15·cleaned·references40 wrote·15·cleaned·references
41 [2026-04-29·04:42:34.218]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers41 [2025-03-28·00:35:47.926]·[puff::index::jointLog]·[info]·Filter·size·not·provided;·estimating·from·number·of·distinct·k-mers
42 [2026-04-29·04:42:34.219]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^2042 [2025-03-28·00:35:47.927]·[puff::index::jointLog]·[info]·ntHll·estimated·54811·distinct·k-mers,·setting·filter·size·to·2^20
43 Threads·=·243 Threads·=·2
44 Vertex·length·=·3144 Vertex·length·=·31
45 Hash·functions·=·545 Hash·functions·=·5
46 Filter·size·=·104857646 Filter·size·=·1048576
47 Capacity·=·247 Capacity·=·2
48 Files:·48 Files:·
49 sample_salmon_quasi_index/ref_k31_fixed.fa49 sample_salmon_quasi_index/ref_k31_fixed.fa
Offset 59, 158 lines modifiedOffset 59, 158 lines modified
59 True·junctions·count·=·1459 True·junctions·count·=·14
60 False·junctions·count·=·1760 False·junctions·count·=·17
61 Hash·table·size·=·3161 Hash·table·size·=·31
62 Candidate·marks·count·=·5462 Candidate·marks·count·=·54
63 --------------------------------------------------------------------------------63 --------------------------------------------------------------------------------
64 Reallocating·bifurcations·time:·064 Reallocating·bifurcations·time:·0
65 True·marks·count:·5165 True·marks·count:·51
66 Edges·construction·time:·066 Edges·construction·time:·1
67 --------------------------------------------------------------------------------67 --------------------------------------------------------------------------------
68 Distinct·junctions·=·1468 Distinct·junctions·=·14
  
69 TwoPaCo::buildGraphMain::·allocated·with·scalable_malloc;·freeing.69 TwoPaCo::buildGraphMain::·allocated·with·scalable_malloc;·freeing.
70 TwoPaCo::buildGraphMain::·Calling·scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS,·0);70 TwoPaCo::buildGraphMain::·Calling·scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS,·0);
71 allowedIn:·1271 allowedIn:·12
72 Max·Junction·ID:·7072 Max·Junction·ID:·70
73 seen.size():569·kmerInfo.size():7173 seen.size():569·kmerInfo.size():71
74 approximateContigTotalLength:·1746574 approximateContigTotalLength:·17465
75 counters·for·complex·kmers:75 counters·for·complex·kmers:
76 (prec>1·&·succ>1)=0·|·(succ>1·&·isStart)=0·|·(prec>1·&·isEnd)=0·|·(isStart·&·isEnd)=076 (prec>1·&·succ>1)=0·|·(succ>1·&·isStart)=0·|·(prec>1·&·isEnd)=0·|·(isStart·&·isEnd)=0
77 contig·count:·24·element·count:·19592·complex·nodes:·077 contig·count:·24·element·count:·19592·complex·nodes:·0
78 #·of·ones·in·rank·vector:·2378 #·of·ones·in·rank·vector:·23
79 [2026-04-29·04:42:34.257]·[puff::index::jointLog]·[info]·Starting·the·Pufferfish·indexing·by·reading·the·GFA·binary·file.79 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Starting·the·Pufferfish·indexing·by·reading·the·GFA·binary·file.
80 [2026-04-29·04:42:34.257]·[puff::index::jointLog]·[info]·Setting·the·index/BinaryGfa·directory·sample_salmon_quasi_index80 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Setting·the·index/BinaryGfa·directory·sample_salmon_quasi_index
81 size·=·1959281 size·=·19592
82 -----------------------------------------82 -----------------------------------------
83 |·Loading·contigs·|·Time·=·95.88·us83 |·Loading·contigs·|·Time·=·45.681·us
84 -----------------------------------------84 -----------------------------------------
85 size·=·1959285 size·=·19592
86 -----------------------------------------86 -----------------------------------------
87 |·Loading·contig·boundaries·|·Time·=·45.44·us87 |·Loading·contig·boundaries·|·Time·=·19.6·us
88 -----------------------------------------88 -----------------------------------------
89 Number·of·ones:·2389 Number·of·ones:·23
90 Number·of·ones·per·inventory·item:·51290 Number·of·ones·per·inventory·item:·512
91 Inventory·entries·filled:·191 Inventory·entries·filled:·1
92 2392 23
93 [2026-04-29·04:42:34.257]·[puff::index::jointLog]·[info]·Done·wrapping·the·rank·vector·with·a·rank9sel·structure.93 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Done·wrapping·the·rank·vector·with·a·rank9sel·structure.
94 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·contig·count·for·validation:·2394 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·contig·count·for·validation:·23
95 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·Total·#·of·Contigs·:·2395 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Total·#·of·Contigs·:·23
96 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·Total·#·of·numerical·Contigs·:·2396 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Total·#·of·numerical·Contigs·:·23
97 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·Total·#·of·contig·vec·entries:·3697 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Total·#·of·contig·vec·entries:·36
98 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·bits·per·offset·entry·698 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·bits·per·offset·entry·6
99 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·Done·constructing·the·contig·vector.·2499 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Done·constructing·the·contig·vector.·24
100 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·#·segments·=·23100 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·#·segments·=·23
101 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·total·length·=·19,592101 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·total·length·=·19,592
102 [2026-04-29·04:42:34.258]·[puff::index::jointLog]·[info]·Reading·the·reference·files·...102 [2025-03-28·00:35:48.031]·[puff::index::jointLog]·[info]·Reading·the·reference·files·...
103 [2026-04-29·04:42:34.259]·[puff::index::jointLog]·[info]·positional·integer·width·=·15103 [2025-03-28·00:35:48.052]·[puff::index::jointLog]·[info]·positional·integer·width·=·15
104 [2026-04-29·04:42:34.259]·[puff::index::jointLog]·[info]·seqSize·=·19,592104 [2025-03-28·00:35:48.052]·[puff::index::jointLog]·[info]·seqSize·=·19,592
105 [2026-04-29·04:42:34.259]·[puff::index::jointLog]·[info]·rankSize·=·19,592105 [2025-03-28·00:35:48.052]·[puff::index::jointLog]·[info]·rankSize·=·19,592
106 [2026-04-29·04:42:34.259]·[puff::index::jointLog]·[info]·edgeVecSize·=·0106 [2025-03-28·00:35:48.052]·[puff::index::jointLog]·[info]·edgeVecSize·=·0
107 [2026-04-29·04:42:34.259]·[puff::index::jointLog]·[info]·num·keys·=·18,902107 [2025-03-28·00:35:48.052]·[puff::index::jointLog]·[info]·num·keys·=·18,902
108 \xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec.[Building[·...·truncated·by·diffoscope;·len:·75854,·SHA:·1bda006b526ed63781243a7177c0ede824f9ffcddd6ffad9d8105b75aec7106f·...·]·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec108 \xd[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·1··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·1··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·1··sec.[Building·BooPHF]··2.32·%···elapsed:···0·min·0··sec···remaining:···0·min·1··sec.[Building[·...·truncated·by·diffoscope;·len:·75854,·SHA:·0e6163e9ebd0d57576ec3b093cd46ade6f504b174d5ee2e25a23208c1ae15ff7·...·]·%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec\xd[Building·BooPHF]··100··%···elapsed:···0·min·0··sec···remaining:···0·min·0··sec
109 [2026-04-29·04:42:34.276]·[puff::index::jointLog]·[info]·mphf·size·=·0.0125198·MB109 [2025-03-28·00:35:48.505]·[puff::index::jointLog]·[info]·mphf·size·=·0.0125198·MB
110 [2026-04-29·04:42:34.276]·[puff::index::jointLog]·[info]·chunk·size·=·9,796110 [2025-03-28·00:35:48.505]·[puff::index::jointLog]·[info]·chunk·size·=·9,796
111 [2026-04-29·04:42:34.277]·[puff::index::jointLog]·[info]·chunk·0·=·[0,·9,796)111 [2025-03-28·00:35:48.505]·[puff::index::jointLog]·[info]·chunk·0·=·[0,·9,796)
112 [2026-04-29·04:42:34.277]·[puff::index::jointLog]·[info]·chunk·1·=·[9,796,·19,562)112 [2025-03-28·00:35:48.505]·[puff::index::jointLog]·[info]·chunk·1·=·[9,796,·19,562)
113 [2026-04-29·04:42:34.279]·[puff::index::jointLog]·[info]·finished·populating·pos·vector113 [2025-03-28·00:35:48.525]·[puff::index::jointLog]·[info]·finished·populating·pos·vector
114 [2026-04-29·04:42:34.279]·[puff::index::jointLog]·[info]·writing·index·components114 [2025-03-28·00:35:48.525]·[puff::index::jointLog]·[info]·writing·index·components
115 [2026-04-29·04:42:34.279]·[puff::index::jointLog]·[info]·finished·writing·dense·pufferfish·index115 [2025-03-28·00:35:48.525]·[puff::index::jointLog]·[info]·finished·writing·dense·pufferfish·index
116 [2026-04-29·04:42:34.279]·[jLog]·[info]·done·building·index116 [2025-03-28·00:35:48.525]·[jLog]·[info]·done·building·index
117 for·info,·total·work·write·each··:·2.331····total·work·inram·from·level·3·:·4.322··total·work·raw·:·25.000·117 for·info,·total·work·write·each··:·2.331····total·work·inram·from·level·3·:·4.322··total·work·raw·:·25.000·
118 Bitarray··········105024··bits·(100.00·%)···(array·+·ranks·)118 Bitarray··········105024··bits·(100.00·%)···(array·+·ranks·)
119 final·hash·············0··bits·(0.00·%)·(nb·in·final·hash·0)119 final·hash·············0··bits·(0.00·%)·(nb·in·final·hash·0)
120 ###·salmon·(selective-alignment-based)·v1.10.2120 ###·salmon·(selective-alignment-based)·v1.10.2
121 ###·[·program·]·=>·salmon·121 ###·[·program·]·=>·salmon·
122 ###·[·command·]·=>·quant·122 ###·[·command·]·=>·quant·
123 ###·[·index·]·=>·{·sample_salmon_quasi_index·}123 ###·[·index·]·=>·{·sample_salmon_quasi_index·}
124 ###·[·libType·]·=>·{·IU·}124 ###·[·libType·]·=>·{·IU·}
125 ###·[·mates1·]·=>·{·reads_1.fastq·}125 ###·[·mates1·]·=>·{·reads_1.fastq·}
126 ###·[·mates2·]·=>·{·reads_2.fastq·}126 ###·[·mates2·]·=>·{·reads_2.fastq·}
127 ###·[·output·]·=>·{·sample_salmon_quasi_quant·}127 ###·[·output·]·=>·{·sample_salmon_quasi_quant·}
128 Logs·will·be·written·to·sample_salmon_quasi_quant/logs128 Logs·will·be·written·to·sample_salmon_quasi_quant/logs
129 [2026-04-29·04:42:34.329]·[jointLog]·[info]·setting·maxHashResizeThreads·to·12 
130 -----------------------------------------129 -----------------------------------------
Max diff block lines reached; 6859/177491 bytes (3.86%) of diff not shown.
Generated by diffoscope 291