/usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9WWIv3VC/seqan3_3.4.0~rc.3+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9WWIv3VC/seqan3_3.4.0~rc.3+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9WWIv3VC/seqan3_3.4.0~rc.3+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9WWIv3VC/b1/seqan3_3.4.0~rc.3+ds-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.9WWIv3VC/b2/seqan3_3.4.0~rc.3+ds-3

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6.79 KB

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6.94 KB

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56.9 KB

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131 KB

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168 KB

Max HTML report size reached

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Max HTML report size reached

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145 KB

Max HTML report size reached

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75.5 KB

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20.1 KB

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48.6 KB

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124 KB

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154 KB

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293 KB

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50.4 KB

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35.0 KB

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63.5 KB

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42.6 KB

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32.5 KB

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331 KB

Max HTML report size reached

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43.0 KB

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114 KB

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37.5 KB

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27.9 KB

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21.6 KB

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28.0 KB

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29.9 KB

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85.5 KB

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3.64 KB

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16.2 KB

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42.0 KB

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54.7 KB

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108 KB

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58.4 KB

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24.7 KB

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28.8 KB

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3.81 KB

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37.7 KB

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73.3 KB

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33.4 KB

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67.1 KB

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5.59 KB

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42.0 KB

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55.8 KB

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54.8 KB

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103 KB

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19.3 KB

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5.53 KB

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55.0 KB

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209 KB

Max HTML report size reached

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215 KB

Max HTML report size reached

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177 KB

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55.6 KB

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121 KB

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7.95 KB

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163 KB

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151 KB

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222 KB

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134 KB

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149 KB

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103 KB

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33.6 KB

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56.3 KB

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8.66 KB

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184 KB

Max HTML report size reached

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2.21 MB

Max HTML report size reached

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13.3 KB

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7.9 KB

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23.6 KB

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26.6 KB

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14.7 KB

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71.9 KB

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17.2 KB

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62.4 KB

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1.87 KB

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117 KB

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114 KB

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270 KB

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8.62 KB

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329 KB

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Max HTML report size reached

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16.1 KB

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255 KB

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122 KB

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301 KB

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301 KB

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289 KB

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289 KB

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289 KB

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55.1 KB

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89.3 KB

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348 KB

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348 KB

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348 KB

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348 KB

Max HTML report size reached

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333 KB

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332 KB

Max HTML report size reached

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333 KB

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332 KB

Max HTML report size reached

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179 KB

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179 KB

Max HTML report size reached

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179 KB

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179 KB

Max HTML report size reached

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67.0 KB

Max HTML report size reached

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67.1 KB

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67.0 KB

Max HTML report size reached

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431 KB

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431 KB

Max HTML report size reached

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432 KB

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431 KB

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381 KB

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381 KB

Max HTML report size reached

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381 KB

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381 KB

Max HTML report size reached

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312 KB

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312 KB

Max HTML report size reached

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312 KB

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312 KB

Max HTML report size reached

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183 KB

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183 KB

Max HTML report size reached

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183 KB

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183 KB

Max HTML report size reached

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231 KB

Max HTML report size reached

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231 KB

Max HTML report size reached

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282 KB

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282 KB

Max HTML report size reached

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282 KB

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282 KB

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152 KB

Max HTML report size reached

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152 KB

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152 KB

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46.7 KB

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120 KB

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120 KB

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120 KB

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120 KB

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200 KB

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200 KB

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200 KB

Max HTML report size reached

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125 KB

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125 KB

Max HTML report size reached

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125 KB

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125 KB

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77.1 KB

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77.0 KB

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77.1 KB

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77.0 KB

Max HTML report size reached

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269 KB

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269 KB

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269 KB

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269 KB

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149 KB

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105 KB

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105 KB

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105 KB

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105 KB

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105 KB

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105 KB

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105 KB

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263 KB

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263 KB

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Max HTML report size reached

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155 KB

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154 KB

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192 KB

Max HTML report size reached

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192 KB

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192 KB

Max HTML report size reached

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577 KB

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577 KB

Max HTML report size reached

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577 KB

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577 KB

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490 KB

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490 KB

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490 KB

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16.8 KB

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309 KB

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309 KB

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309 KB

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309 KB

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394 KB

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Max HTML report size reached

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529 KB

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193 KB

Max HTML report size reached

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193 KB

Max HTML report size reached

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195 KB

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194 KB

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125 KB

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125 KB

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103 KB

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102 KB

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103 KB

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102 KB

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66.0 KB

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113 KB

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113 KB

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113 KB

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125 KB

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125 KB

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113 KB

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113 KB

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113 KB

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208 KB

Max HTML report size reached

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82.0 KB

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52.9 KB

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112 KB

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72.8 KB

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198 KB

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4.49 KB

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10.3 KB

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10.8 KB

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148 KB

Max HTML report size reached

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12.3 KB

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19.5 KB

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72.4 KB

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945 B

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49.9 KB

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14.8 KB

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10.8 KB

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6.65 KB

⊟

7.2 KB

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28.7 KB

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32.6 KB

⊟

123 KB

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29.6 KB

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59.5 KB

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18.8 KB

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931 B

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7.7 KB

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5.76 KB

⊟

79.6 KB

⊟

96.7 KB

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95.4 KB

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21.0 KB

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27.5 KB

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22.5 KB

⊟

1.37 KB

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10.8 KB

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37.1 KB

⊟

8.42 KB

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48.9 KB

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3.8 KB

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20.9 KB

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119 KB

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84.4 KB

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68.4 KB

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16.8 KB

⊟

5.77 KB

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18.0 KB

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15.5 KB

⊟

7.9 KB

⊟

7.09 KB

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38.4 KB

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40.3 KB

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4.59 KB

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178 KB

Max HTML report size reached

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4.91 KB

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146 KB

Max HTML report size reached

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87.6 KB

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86.0 KB

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3.62 KB

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9.53 KB

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40.5 KB

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17.1 KB

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3.94 KB

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12.4 KB

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12.1 KB

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12.3 KB

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24.6 KB

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26.3 KB

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52.4 KB

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41.6 KB

⊟

12.4 KB

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12.1 KB

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45.5 KB

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48.3 KB

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7.92 KB

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149 KB

Max HTML report size reached

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5.82 KB

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33.8 KB

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31.9 KB

⊟

28.5 KB

⊟

6.13 KB

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29.8 KB

⊟

1.07 KB

⊟

995 B

Max HTML report size reached

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9.01 KB

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8.91 KB

Max HTML report size reached

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13.8 KB

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13.7 KB

Max HTML report size reached

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8.26 KB

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8.15 KB

Max HTML report size reached

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1.58 KB

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1.48 KB

Max HTML report size reached

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3.09 KB

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2.99 KB

Max HTML report size reached

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11.5 KB

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11.4 KB

Max HTML report size reached

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14.2 KB

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14.1 KB

Max HTML report size reached

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24.0 KB

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17.4 KB

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12.6 KB

⊟

9.88 KB

⊟

23.4 KB

⊟

23.4 KB

⊟

24.0 KB

⊟

23.3 KB

⊟

28.8 KB

⊟

95.2 KB

⊟

3.47 KB

⊟

12.7 KB

⊟

6.67 KB

⊟

57.8 KB

⊟

7.62 KB

⊟

22.9 KB

⊟

5.82 KB

⊟

29.8 KB

⊟

5.03 KB

⊟

11.5 KB

⊟

26.3 KB

⊟

26.0 KB

⊟

26.1 KB

⊟

135 KB

⊟

92.3 KB

⊟

6.85 KB

⊟

26.1 KB

⊟

59.7 KB

⊟

1.54 KB

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1.44 KB

Max HTML report size reached

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1.17 KB

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1.08 KB

Max HTML report size reached

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147 KB

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147 KB

Max HTML report size reached

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32.9 KB

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32.8 KB

Max HTML report size reached

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88.4 KB

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88.3 KB

Max HTML report size reached

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16.9 KB

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16.8 KB

Max HTML report size reached

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180 KB

⊟

180 KB

Max HTML report size reached

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97.4 KB

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97.3 KB

Max HTML report size reached

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2.23 KB

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2.13 KB

Max HTML report size reached

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142 KB

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142 KB

Max HTML report size reached

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301 KB

⊟

301 KB

Max HTML report size reached

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71.5 KB

⊟

71.4 KB

Max HTML report size reached

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25.2 KB

⊟

25.1 KB

Max HTML report size reached

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9.96 KB

⊟

9.86 KB

Max HTML report size reached

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44.1 KB

⊟

44.0 KB

Max HTML report size reached

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1.24 KB

⊟

1.15 KB

Max HTML report size reached

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1.17 KB

⊟

1.07 KB

Max HTML report size reached

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2.08 KB

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1.98 KB

Max HTML report size reached

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723 B

⊟

623 B

⊟

134 KB

⊟

134 KB

Max HTML report size reached

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78.5 KB

⊟

78.4 KB

Max HTML report size reached

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177 KB

⊟

177 KB

Max HTML report size reached

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72.0 KB

⊟

71.9 KB

Max HTML report size reached

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92.8 KB

⊟

92.7 KB

Max HTML report size reached

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168 KB

⊟

168 KB

Max HTML report size reached

⊟

5.8 KB

⊟

5.7 KB

Max HTML report size reached

⊟

4.45 KB

⊟

4.35 KB

Max HTML report size reached

⊟

23.9 KB

⊟

33.9 KB

⊟

21.0 KB

⊟

87.7 KB

⊟

26.7 KB

⊟

11.0 KB

⊟

4.65 KB

⊟

17.0 KB

⊟

5.47 KB

⊟

14.1 KB

⊟

73.7 KB

⊟

174 KB

Max HTML report size reached

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13.4 KB

⊟

6.39 KB

⊟

2.47 KB

⊟

2.69 KB

⊟

2.7 KB

⊟

2.69 KB

⊟

2.7 KB

⊟

2.31 KB

⊟

2.45 KB

⊟

2.31 KB

⊟

4.95 KB

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1	·89cf1f6481fd2d3bd27ce2dce754fb12·769096·libdevel·optional·libseqan3-dev_3.4.0~rc.3+ds-3_all.deb	1	·89cf1f6481fd2d3bd27ce2dce754fb12·769096·libdevel·optional·libseqan3-dev_3.4.0~rc.3+ds-3_all.deb
2	·~~3f7a~~e9~~9985~~4a956323ca~~dcd~~4f~~f4c~~253d·2~~795~~056·doc·optional·seqan3-doc_3.4.0~rc.3+ds-3_all.deb	2	·092b374f9ff66132a92334f22727956b·2826056·doc·optional·seqan3-doc_3.4.0~rc.3+ds-3_all.deb


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1	drwxr-xr-x···0·root·········(0)·root·········(0)········0·2025-02-12·09:42:19.000000·./	1	drwxr-xr-x···0·root·········(0)·root·········(0)········0·2025-02-12·09:42:19.000000·./
2	-rw-r--r--···0·root·········(0)·root·········(0)······866·2025-02-12·09:42:19.000000·./control	2	-rw-r--r--···0·root·········(0)·root·········(0)······866·2025-02-12·09:42:19.000000·./control
3	-rw-r--r--···0·root·········(0)·root·········(0)···375191·2025-02-12·09:42:19.000000·./md5sums	3	-rw-r--r--···0·root·········(0)·root·········(0)···375371·2025-02-12·09:42:19.000000·./md5sums


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1	Package:·seqan3-doc	1	Package:·seqan3-doc
2	Source:·seqan3	2	Source:·seqan3
3	Version:·3.4.0~rc.3+ds-3	3	Version:·3.4.0~rc.3+ds-3
4	Architecture:·all	4	Architecture:·all
5	Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org>	5	Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org>
6	Installed-Size:·53041	6	Installed-Size:·55073
7	Depends:·doxygen-awesome-css	7	Depends:·doxygen-awesome-css
8	Suggests:·libseqan3-dev	8	Suggests:·libseqan3-dev
9	Section:·doc	9	Section:·doc
10	Priority:·optional	10	Priority:·optional
11	Multi-Arch:·foreign	11	Multi-Arch:·foreign
12	Homepage:·https://www.seqan.de/	12	Homepage:·https://www.seqan.de/
13	Description:·C++·library·for·the·analysis·of·biological·sequences·v3·(documentation)	13	Description:·C++·library·for·the·analysis·of·biological·sequences·v3·(documentation)


Offset 126, 25 lines modified		Offset 126, 25 lines modified
126	<p>&zwj;A·primary·goal·of·all·the·conferences·and·user·groups·that·refer·to·this·Code·of·Conduct·is·to·be·inclusive·to·the·largest·number·of·contributors,·with·the·most·varied·and·diverse·backgrounds·possible.·As·such,·we·are·committed·to·providing·a·friendly,·safe·and·welcoming·environment·for·all,·regardless·of·gender,·sexual·orientation,·ability,·ethnicity,·socioeconomic·status·and·religion·(or·lack·thereof).·</p>	126	<p>&zwj;A·primary·goal·of·all·the·conferences·and·user·groups·that·refer·to·this·Code·of·Conduct·is·to·be·inclusive·to·the·largest·number·of·contributors,·with·the·most·varied·and·diverse·backgrounds·possible.·As·such,·we·are·committed·to·providing·a·friendly,·safe·and·welcoming·environment·for·all,·regardless·of·gender,·sexual·orientation,·ability,·ethnicity,·socioeconomic·status·and·religion·(or·lack·thereof).·</p>
127	</blockquote>	127	</blockquote>
128	<blockquote·class="doxtable">	128	<blockquote·class="doxtable">
129	<p>&zwj;A·supplemental·goal·of·this·Code·of·Conduct·is·to·increase·open·[source/culture/tech]·citizenship·by·encouraging·participants·to·recognize·and·strengthen·the·relationships·between·our·actions·and·their·effects·on·our·community.·</p>	129	<p>&zwj;A·supplemental·goal·of·this·Code·of·Conduct·is·to·increase·open·[source/culture/tech]·citizenship·by·encouraging·participants·to·recognize·and·strengthen·the·relationships·between·our·actions·and·their·effects·on·our·community.·</p>
130	</blockquote>	130	</blockquote>
131	<p>Please·have·a·look·at·the·full·text·here:·<a·href="https://berlincodeofconduct.org/">https://berlincodeofconduct.org/</a></p>	131	<p>Please·have·a·look·at·the·full·text·here:·<a·href="https://berlincodeofconduct.org/">https://berlincodeofconduct.org/</a></p>
132	<p>Many·SeqAn·core·team·members·and·contributors·are·employees·and/or·(PhD)·students·of·Freie·Universität·Berlin·and·are·thus·also·bound·by·the·<a·href="https://www.fu-berlin.de/service/zuvdocs/amtsblatt/2002/ab292002.pdf"·target="_blank">Academic·Honour·Code</a>.</p>	132	<p>Many·SeqAn·core·team·members·and·contributors·are·employees·and/or·(PhD)·students·of·Freie·Universität·Berlin·and·are·thus·also·bound·by·the·<a·href="https://www.fu-berlin.de/service/zuvdocs/amtsblatt/2002/ab292002.pdf"·target="_blank">Academic·Honour·Code</a>.</p>
133	<h1><a·class="anchor"·id="autotoc_md~~197~~"></a>	133	<h1><a·class="anchor"·id="autotoc_md215"></a>
134	Scope</h1>	134	Scope</h1>
135	<p>This·Code·of·Conduct·applies·both·within·project·spaces·and·in·public·spaces·when·an·individual·is·representing·the·project·or·its·community.·In·particular,·it·applies·to:</p>	135	<p>This·Code·of·Conduct·applies·both·within·project·spaces·and·in·public·spaces·when·an·individual·is·representing·the·project·or·its·community.·In·particular,·it·applies·to:</p>
136	<ul>	136	<ul>
137	<li>Communication·on·GitHub,·including·issues,·pull-requests·and·commit·messages;</li>	137	<li>Communication·on·GitHub,·including·issues,·pull-requests·and·commit·messages;</li>
138	<li>the·<code>seqan-dev</code>·and·<code>seqan-team</code>·mailing·lists;</li>	138	<li>the·<code>seqan-dev</code>·and·<code>seqan-team</code>·mailing·lists;</li>
139	<li>the·Gitter·chat·rooms;</li>	139	<li>the·Gitter·chat·rooms;</li>
140	<li>social·media·accounts·of·SeqAn;</li>	140	<li>social·media·accounts·of·SeqAn;</li>
141	<li>SeqAn-related·meetings·in·real·life.</li>	141	<li>SeqAn-related·meetings·in·real·life.</li>
142	</ul>	142	</ul>
143	<h1><a·class="anchor"·id="autotoc_md~~198~~"></a>	143	<h1><a·class="anchor"·id="autotoc_md216"></a>
144	Enforcement</h1>	144	Enforcement</h1>
145	<p>If·you·observe·a·violation·of·this·Code·of·Conduct,·you·can·do·one·of·the·following,·depending·on·the·severity·of·the·violation·and·your·own·capacity·to·deal·with·the·offending·person:</p>	145	<p>If·you·observe·a·violation·of·this·Code·of·Conduct,·you·can·do·one·of·the·following,·depending·on·the·severity·of·the·violation·and·your·own·capacity·to·deal·with·the·offending·person:</p>
146	<ul>	146	<ul>
147	<li>Try·to·resolve·the·matter·immediately·with·the·person·by·referring·to·this·Code·of·Conduct.</li>	147	<li>Try·to·resolve·the·matter·immediately·with·the·person·by·referring·to·this·Code·of·Conduct.</li>
148	<li>Raise·the·issue·at·a·weekly·meeting·of·the·core·team·or·by·contacting·a·member·of·the·<a·href="https://github.com/orgs/seqan/teams/core"·target="_blank">core·team</a>.·The·core·team·is·obligated·to·maintain·confidentiality·with·regard·to·the·reporter·of·an·incident.</li>	148	<li>Raise·the·issue·at·a·weekly·meeting·of·the·core·team·or·by·contacting·a·member·of·the·<a·href="https://github.com/orgs/seqan/teams/core"·target="_blank">core·team</a>.·The·core·team·is·obligated·to·maintain·confidentiality·with·regard·to·the·reporter·of·an·incident.</li>
149	<li>If·the·problem·is·with·a·person·on·the·core·team,·you·can·contact·<a·href="#"·onclick="location.href='mai'+'lto:'+'<pr'+'ec'+'hel'+'t@'+'inf'+'.f'+'u-b'+'er'+'lin'+'.d'+'e>';·return·false;">Lutz·Prechelt</a>.·He·is·a·professor·at·Freie·Universität·Berlin·and·not·directly·involved·with·the·SeqAn·project.·He·has·agreed·to·help·find·solutions·or·redirect·to·other·helpful·entities·if·cases·are·brought·to·him.</li>	149	<li>If·the·problem·is·with·a·person·on·the·core·team,·you·can·contact·<a·href="#"·onclick="location.href='mai'+'lto:'+'<pr'+'ec'+'hel'+'t@'+'inf'+'.f'+'u-b'+'er'+'lin'+'.d'+'e>';·return·false;">Lutz·Prechelt</a>.·He·is·a·professor·at·Freie·Universität·Berlin·and·not·directly·involved·with·the·SeqAn·project.·He·has·agreed·to·help·find·solutions·or·redirect·to·other·helpful·entities·if·cases·are·brought·to·him.</li>
150	<li>Employees·and·students·of·Freie·Universität·Berlin·can·also·contact·one·of·the·<a·href="https://www.fu-berlin.de/en/einrichtungen/interessenvertretungen/index.html"·target="_blank">bodies·representing·specific·interests</a>.</li>	150	<li>Employees·and·students·of·Freie·Universität·Berlin·can·also·contact·one·of·the·<a·href="https://www.fu-berlin.de/en/einrichtungen/interessenvertretungen/index.html"·target="_blank">bodies·representing·specific·interests</a>.</li>


Offset 119, 31 lines modified		Offset 119, 31 lines modified

119	<div><div·class="header">	119	<div><div·class="header">
120	··<div·class="headertitle"><div·class="title">Contributing</div></div>	120	··<div·class="headertitle"><div·class="title">Contributing</div></div>
121	</div><!--header-->	121	</div><!--header-->
122	<div·class="contents">	122	<div·class="contents">
123	<div·class="textblock"><p>First·of·all,·thanks·for·wanting·to·contribute·to·SeqAn!·Community·is·important·to·us·and·we·strive·to·maintain·a·great·culture·and·atmosphere.·Please·have·a·look·at·our·<a·class="el"·href="about_code_of_conduct.html">Code·of·Conduct</a>.</p>	123	<div·class="textblock"><p>First·of·all,·thanks·for·wanting·to·contribute·to·SeqAn!·Community·is·important·to·us·and·we·strive·to·maintain·a·great·culture·and·atmosphere.·Please·have·a·look·at·our·<a·class="el"·href="about_code_of_conduct.html">Code·of·Conduct</a>.</p>
124	<p>The·following·is·a·guide·that·helps·stream-line·the·process·of·adding·changes.·If·you·haven't·contributed·to·SeqAn·before,·don't·worry·about·getting·something·wrong,·that's·absolutely·OK.·However,·following·this·guide·closely·will·reduce·work·for·all·of·us·and·increases·the·chance·of·your·changes·being·merged·quickly.</p>	124	<p>The·following·is·a·guide·that·helps·stream-line·the·process·of·adding·changes.·If·you·haven't·contributed·to·SeqAn·before,·don't·worry·about·getting·something·wrong,·that's·absolutely·OK.·However,·following·this·guide·closely·will·reduce·work·for·all·of·us·and·increases·the·chance·of·your·changes·being·merged·quickly.</p>
125	<h1><a·class="anchor"·id="autotoc_md~~199~~"></a>	125	<h1><a·class="anchor"·id="autotoc_md217"></a>
126	Pull·request·workflow</h1>	126	Pull·request·workflow</h1>
127	<p>The·overall·workflow·of·contributing·changes·to·this·repository·is:</p>	127	<p>The·overall·workflow·of·contributing·changes·to·this·repository·is:</p>
128	<ol·type="1">	128	<ol·type="1">
129	<li>Create·an·issue·with·bug·report·or·feature·request.</li>	129	<li>Create·an·issue·with·bug·report·or·feature·request.</li>
130	<li>Wait·for·comments·from·the·team·and·then·collectively·decide·on·the·best·way·to·solve·the·issue.</li>	130	<li>Wait·for·comments·from·the·team·and·then·collectively·decide·on·the·best·way·to·solve·the·issue.</li>
131	<li>Fork·the·repository·and·create·a·branch·on·your·fork.</li>	131	<li>Fork·the·repository·and·create·a·branch·on·your·fork.</li>
132	<li>Commit·the·solution·to·your·local·branch.</li>	132	<li>Commit·the·solution·to·your·local·branch.</li>
133	<li>Create·a·pull-request·to·our·main·branch·from·your·branch.</li>	133	<li>Create·a·pull-request·to·our·main·branch·from·your·branch.</li>
134	<li>Wait·for·reviews·and·resolve·reviewer·comments.</li>	134	<li>Wait·for·reviews·and·resolve·reviewer·comments.</li>
135	<li>Wait·for·the·PR·to·be·merged.</li>	135	<li>Wait·for·the·PR·to·be·merged.</li>
136	</ol>	136	</ol>
137	<h2><a·class="anchor"·id="autotoc_md200"></a>	137	<h2><a·class="anchor"·id="autotoc_md218"></a>
138	Creating·an·issue</h2>	138	Creating·an·issue</h2>
139	<p>Go·to·<a·href="https://github.com/seqan/seqan3/issues">https://github.com/seqan/seqan3/issues</a>·and·check·if·someone·else·has·already·reported·the·same·issue.·If·not,·create·a·new·issue·and·follow·the·template.</p>	139	<p>Go·to·<a·href="https://github.com/seqan/seqan3/issues">https://github.com/seqan/seqan3/issues</a>·and·check·if·someone·else·has·already·reported·the·same·issue.·If·not,·create·a·new·issue·and·follow·the·template.</p>
140	<p>We·usually·reply·quickly·to·issues;·if·there·is·no·reply·within·a·week·(and·it's·not·prime·vacation·season·in·Europe)·feel·free·to·reply·to·the·issue·and·explicitly·mention·<code>@seqan/core</code>.</p>	140	<p>We·usually·reply·quickly·to·issues;·if·there·is·no·reply·within·a·week·(and·it's·not·prime·vacation·season·in·Europe)·feel·free·to·reply·to·the·issue·and·explicitly·mention·<code>@seqan/core</code>.</p>
141	<h2><a·class="anchor"·id="autotoc_md201"></a>	141	<h2><a·class="anchor"·id="autotoc_md219"></a>
142	Creating·commits</h2>	142	Creating·commits</h2>
143	<p>If·you·have·never·used·the·Fork·&·Pull·Model,·have·a·look·at·<a·href="https://guides.github.com/introduction/flow/"·target="_blank">this·guide</a>.</p>	143	<p>If·you·have·never·used·the·Fork·&·Pull·Model,·have·a·look·at·<a·href="https://guides.github.com/introduction/flow/"·target="_blank">this·guide</a>.</p>
144	<p>When·creating·commits·to·your·branch·and·before·requesting·a·pull,·please·ensure·the·following:</p>	144	<p>When·creating·commits·to·your·branch·and·before·requesting·a·pull,·please·ensure·the·following:</p>
145	<ul>	145	<ul>
146	<li>Proper·<b>naming</b>·of·commits·(see·below).</li>	146	<li>Proper·<b>naming</b>·of·commits·(see·below).</li>
147	<li>Content·other·than·the·first·line·is·irrelevant·in·the·commit·message.</li>	147	<li>Content·other·than·the·first·line·is·irrelevant·in·the·commit·message.</li>
148	<li>The·number·of·commits·should·be·minimal·and·commits·shouldn't·revert/change·previous·ones.<ul>	148	<li>The·number·of·commits·should·be·minimal·and·commits·shouldn't·revert/change·previous·ones.<ul>
Offset 157, 20 lines modified		Offset 157, 20 lines modified
157	<div·class="line">[FIX]·····Whenever·you·fix·some·wrong·code·in·the·source</div>	157	<div·class="line">[FIX]·····Whenever·you·fix·some·wrong·code·in·the·source</div>
158	<div·class="line">[DOC]·····Whenever·you·do·something·only(!)·related·to·the·documentation</div>	158	<div·class="line">[DOC]·····Whenever·you·do·something·only(!)·related·to·the·documentation</div>
159	<div·class="line">[INFRA]···Whenever·you·change·something·of·the·build·system·or·CI·related</div>	159	<div·class="line">[INFRA]···Whenever·you·change·something·of·the·build·system·or·CI·related</div>
160	<div·class="line">[TEST]····Whenever·you·do·something·related·to·the·tests·(unit·or·benchmark)</div>	160	<div·class="line">[TEST]····Whenever·you·do·something·related·to·the·tests·(unit·or·benchmark)</div>
161	<div·class="line">[MISC]····Whenever·it·does·not·fit·to·any·of·the·above</div>	161	<div·class="line">[MISC]····Whenever·it·does·not·fit·to·any·of·the·above</div>
162	</div><!--·fragment·--><p>E.g.·<code>[FEATURE]·add·support·for·FOO</code>·or·<code>[FIX]·divide·by·zero·in·alignment</code>.</p>	162	</div><!--·fragment·--><p>E.g.·<code>[FEATURE]·add·support·for·FOO</code>·or·<code>[FIX]·divide·by·zero·in·alignment</code>.</p>
163	<p><b>Alternatively,·if·your·changes·are·so·small·that·they·would·fit·into·one·commit,·don't·worry·about·any·of·the·above,·just·state·"Please·squash·commits"·in·the·PR·and·we·will·take·care·of·the·rest.</b></p>	163	<p><b>Alternatively,·if·your·changes·are·so·small·that·they·would·fit·into·one·commit,·don't·worry·about·any·of·the·above,·just·state·"Please·squash·commits"·in·the·PR·and·we·will·take·care·of·the·rest.</b></p>
164	<h2><a·class="anchor"·id="autotoc_md202"></a>	164	<h2><a·class="anchor"·id="autotoc_md220"></a>
165	Opening·a·pull-request·("PR")</h2>	165	Opening·a·pull-request·("PR")</h2>
166	<p>When·you·are·done·with·committing·changes·to·your·branch·and·you·have·tested·your·changes,·open·a·pull·request.·We·have·continuous·integration·in·place·that·should·inform·you·of·test·failures.·Please·try·to·resolve·any·breakage·that·your·pull·request·introduces.</p>	166	<p>When·you·are·done·with·committing·changes·to·your·branch·and·you·have·tested·your·changes,·open·a·pull·request.·We·have·continuous·integration·in·place·that·should·inform·you·of·test·failures.·Please·try·to·resolve·any·breakage·that·your·pull·request·introduces.</p>
167	<p><a·href="https://docs.seqan.de/seqan3/main_user/setup_tests.html"·target="_blank">Here·is·a·guide·for·setting·up·unit·tests·locally.</a></p>	167	<p><a·href="https://docs.seqan.de/seqan3/main_user/setup_tests.html"·target="_blank">Here·is·a·guide·for·setting·up·unit·tests·locally.</a></p>
168	<p>If·there·are·test·failures·that·you·don't·understand,·clearly·indicate·that·you·have·seen·the·errors,·but·cannot·resolve·them·–·then·the·first·reviewer·will·have·a·look·at·them.·Otherwise·the·PR·will·be·treated·as·still·being·work-in-progress.</p>	168	<p>If·there·are·test·failures·that·you·don't·understand,·clearly·indicate·that·you·have·seen·the·errors,·but·cannot·resolve·them·–·then·the·first·reviewer·will·have·a·look·at·them.·Otherwise·the·PR·will·be·treated·as·still·being·work-in-progress.</p>
169	<h2><a·class="anchor"·id="autotoc_md203"></a>	169	<h2><a·class="anchor"·id="autotoc_md221"></a>
170	The·review·process</h2>	170	The·review·process</h2>
171	<h3>Request·first·review</h3>	171	<h3>Request·first·review</h3>
172	<p>After·opening·a·PR·it·goes·through·the·review·process.·This·is·a·two-step·process,·first·a·regular·member·of·the·team·needs·to·approve·your·changes,·then·one·of·the·project·owners·(<code>@h-2</code>·or·<code>@rrahn</code>)·needs·to·approve·and·merge·it.·If·you·are·a·collaborator·of·the·project·and·know·the·SeqAn·team·member·best·suitable·for·the·review·you·can·request·a·review·yourself.·Otherwise·wait·for·a·reviewer·to·be·assigned·to·the·PR.·Do·not·request·reviews·from·a·project·owner·at·this·point.·Always·only·request·review·from·one·person·at·a·time.</p>	172	<p>After·opening·a·PR·it·goes·through·the·review·process.·This·is·a·two-step·process,·first·a·regular·member·of·the·team·needs·to·approve·your·changes,·then·one·of·the·project·owners·(<code>@h-2</code>·or·<code>@rrahn</code>)·needs·to·approve·and·merge·it.·If·you·are·a·collaborator·of·the·project·and·know·the·SeqAn·team·member·best·suitable·for·the·review·you·can·request·a·review·yourself.·Otherwise·wait·for·a·reviewer·to·be·assigned·to·the·PR.·Do·not·request·reviews·from·a·project·owner·at·this·point.·Always·only·request·review·from·one·person·at·a·time.</p>
173	<h3>Resolve·comments</h3>	173	<h3>Resolve·comments</h3>
174	<p>If·you·have·not·contributed·to·SeqAn·before,·you·will·likely·receive·a·lot·of·comments·on·the·style·of·your·code.·This·is·not·a·sign·that·we·don't·appreciate·your·contribution,·but·we·have·high·code·quality·standards·and·everything·must·conform·to·our·<a·href="https://github.com/seqan/seqan3/wiki#library-coding-guide"·target="_blank">style·guide</a>.·In·the·future·we·hope·to·automate·this·step.·After·you·have·received·the·first·review,·go·through·all·comments·and·clarify·any·suggestions·and·requests.·When·you·are·confident·that·you·know·how·to·address·all·comments,·implement·the·changes·and·update·your·PR.</p>	174	<p>If·you·have·not·contributed·to·SeqAn·before,·you·will·likely·receive·a·lot·of·comments·on·the·style·of·your·code.·This·is·not·a·sign·that·we·don't·appreciate·your·contribution,·but·we·have·high·code·quality·standards·and·everything·must·conform·to·our·<a·href="https://github.com/seqan/seqan3/wiki#library-coding-guide"·target="_blank">style·guide</a>.·In·the·future·we·hope·to·automate·this·step.·After·you·have·received·the·first·review,·go·through·all·comments·and·clarify·any·suggestions·and·requests.·When·you·are·confident·that·you·know·how·to·address·all·comments,·implement·the·changes·and·update·your·PR.</p>
175	<h3>Re-request·review</h3>	175	<h3>Re-request·review</h3>
176	<p>Now·re-request·a·review·from·the·previous·reviewer·either·by·clicking·"re-request·review"·or·by·writing·"please·review	176	<p>Now·re-request·a·review·from·the·previous·reviewer·either·by·clicking·"re-request·review"·or·by·writing·"please·review


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139	<p·class="endtd"></p>	139	<p·class="endtd"></p>
140	</td></tr>	140	</td></tr>
141	<tr·class="markdownTableRowOdd">	141	<tr·class="markdownTableRowOdd">
142	<td·class="markdownTableBodyNone">Dependencies···</td><td·class="markdownTableBodyNone"><p·class="starttd"><img·src="copyfree_badge.svg"·alt=""·style="pointer-events:·none;"·class="inline"/>····</p>	142	<td·class="markdownTableBodyNone">Dependencies···</td><td·class="markdownTableBodyNone"><p·class="starttd"><img·src="copyfree_badge.svg"·alt=""·style="pointer-events:·none;"·class="inline"/>····</p>
143	<p·class="endtd"></p>	143	<p·class="endtd"></p>
144	</td></tr>	144	</td></tr>
145	</table>	145	</table>
146	<h1><a·class="anchor"·id="autotoc_md182"></a>	146	<h1><a·class="anchor"·id="autotoc_md212"></a>
147	Source·code·license</h1>	147	Source·code·license</h1>
148	<p>The·contents·of·this·repository/directory,·in·particular·the·library·source·code·of·SeqAn3,·are·licensed·under·the·following·terms:</p>	148	<p>The·contents·of·this·repository/directory,·in·particular·the·library·source·code·of·SeqAn3,·are·licensed·under·the·following·terms:</p>
149	<div·class="fragment"><div·class="line">Copyright·(c)·2006-2023,·Knut·Reinert·&·Freie·Universität·Berlin</div>	149	<div·class="fragment"><div·class="line">Copyright·(c)·2006-2023,·Knut·Reinert·&·Freie·Universität·Berlin</div>
150	<div·class="line">Copyright·(c)·2016-2023,·Knut·Reinert·&·MPI·für·molekulare·Genetik</div>	150	<div·class="line">Copyright·(c)·2016-2023,·Knut·Reinert·&·MPI·für·molekulare·Genetik</div>
151	<div·class="line">All·rights·reserved.</div>	151	<div·class="line">All·rights·reserved.</div>
152	<div·class="line">·</div>	152	<div·class="line">·</div>
153	<div·class="line">Redistribution·and·use·in·source·and·binary·forms,·with·or·without</div>	153	<div·class="line">Redistribution·and·use·in·source·and·binary·forms,·with·or·without</div>
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169	<div·class="line">FOR·ANY·DIRECT,·INDIRECT,·INCIDENTAL,·SPECIAL,·EXEMPLARY,·OR·CONSEQUENTIAL</div>	169	<div·class="line">FOR·ANY·DIRECT,·INDIRECT,·INCIDENTAL,·SPECIAL,·EXEMPLARY,·OR·CONSEQUENTIAL</div>
170	<div·class="line">DAMAGES·(INCLUDING,·BUT·NOT·LIMITED·TO,·PROCUREMENT·OF·SUBSTITUTE·GOODS·OR</div>	170	<div·class="line">DAMAGES·(INCLUDING,·BUT·NOT·LIMITED·TO,·PROCUREMENT·OF·SUBSTITUTE·GOODS·OR</div>
171	<div·class="line">SERVICES;·LOSS·OF·USE,·DATA,·OR·PROFITS;·OR·BUSINESS·INTERRUPTION)·HOWEVER</div>	171	<div·class="line">SERVICES;·LOSS·OF·USE,·DATA,·OR·PROFITS;·OR·BUSINESS·INTERRUPTION)·HOWEVER</div>
172	<div·class="line">CAUSED·AND·ON·ANY·THEORY·OF·LIABILITY,·WHETHER·IN·CONTRACT,·STRICT</div>	172	<div·class="line">CAUSED·AND·ON·ANY·THEORY·OF·LIABILITY,·WHETHER·IN·CONTRACT,·STRICT</div>
173	<div·class="line">LIABILITY,·OR·TORT·(INCLUDING·NEGLIGENCE·OR·OTHERWISE)·ARISING·IN·ANY·WAY</div>	173	<div·class="line">LIABILITY,·OR·TORT·(INCLUDING·NEGLIGENCE·OR·OTHERWISE)·ARISING·IN·ANY·WAY</div>
174	<div·class="line">OUT·OF·THE·USE·OF·THIS·SOFTWARE,·EVEN·IF·ADVISED·OF·THE·POSSIBILITY·OF·SUCH</div>	174	<div·class="line">OUT·OF·THE·USE·OF·THIS·SOFTWARE,·EVEN·IF·ADVISED·OF·THE·POSSIBILITY·OF·SUCH</div>
175	<div·class="line">DAMAGE.</div>	175	<div·class="line">DAMAGE.</div>
176	</div><!--·fragment·--><h1><a·class="anchor"·id="autotoc_md183"></a>	176	</div><!--·fragment·--><h1><a·class="anchor"·id="autotoc_md213"></a>
177	Documentation</h1>	177	Documentation</h1>
178	<p>The·API·documentation·and·manual·are·additionally·provided·under·the·terms·of·the·<a·href="https://creativecommons.org/licenses/by/4.0/"·target="_blank">Creative·Commons·Attribution·4.0·International·License</a>.·This·includes</p><ul>	178	<p>The·API·documentation·and·manual·are·additionally·provided·under·the·terms·of·the·<a·href="https://creativecommons.org/licenses/by/4.0/"·target="_blank">Creative·Commons·Attribution·4.0·International·License</a>.·This·includes</p><ul>
179	<li>doxygen-style·comments·within·the·library·source·code;</li>	179	<li>doxygen-style·comments·within·the·library·source·code;</li>
180	<li>Markdown·files·and·images·in·the·<code>doc</code>-subfolder;</li>	180	<li>Markdown·files·and·images·in·the·<code>doc</code>-subfolder;</li>
181	<li>HTML·or·other·representation·produced·from·the·above.</li>	181	<li>HTML·or·other·representation·produced·from·the·above.</li>
182	</ul>	182	</ul>
183	<p>The·source·code·examples·and·snippets·within·the·documentation·are·additionally·provided·under·the·terms·of·the·<a·href="https://creativecommons.org/publicdomain/zero/1.0/deed"·target="_blank">Creative·Commons·Public·Domain·Dedication·1.0</a>.·This·includes:</p><ul>	183	<p>The·source·code·examples·and·snippets·within·the·documentation·are·additionally·provided·under·the·terms·of·the·<a·href="https://creativecommons.org/publicdomain/zero/1.0/deed"·target="_blank">Creative·Commons·Public·Domain·Dedication·1.0</a>.·This·includes:</p><ul>
184	<li>source·code·files·(<code>.cpp</code>,·<code>.hpp</code>)·in·the·<code>doc</code>-subfolder;</li>	184	<li>source·code·files·(<code>.cpp</code>,·<code>.hpp</code>)·in·the·<code>doc</code>-subfolder;</li>
185	<li>the·contents·of·<code>test/snippet</code>.</li>	185	<li>the·contents·of·<code>test/snippet</code>.</li>
186	</ul>	186	</ul>
187	<h1><a·class="anchor"·id="autotoc_md184"></a>	187	<h1><a·class="anchor"·id="autotoc_md214"></a>
188	Submodules</h1>	188	Submodules</h1>
189	<p>This·repository/directory·may·contain·other·projects'·content·in·the·<code>submodules</code>-subfolder.·We·try·to·ensure·that·all·dependencies·are·permissively·licensed·(BSD/MIT/X11/ISC/Boost…),·but·please·verify·the·respective·license·files·yourself.·</p>	189	<p>This·repository/directory·may·contain·other·projects'·content·in·the·<code>submodules</code>-subfolder.·We·try·to·ensure·that·all·dependencies·are·permissively·licensed·(BSD/MIT/X11/ISC/Boost…),·but·please·verify·the·respective·license·files·yourself.·</p>
190	</div></div><!--·contents·-->	190	</div></div><!--·contents·-->
191	</div><!--·PageDoc·-->	191	</div><!--·PageDoc·-->
192	</div><!--·doc-content·-->	192	</div><!--·doc-content·-->
193	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin	193	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin
194	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik	194	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik


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321	<div·class="line"><a·id="l00296"·name="l00296"></a><span·class="lineno">··296</span>·</div>	321	<div·class="line"><a·id="l00296"·name="l00296"></a><span·class="lineno">··296</span>·</div>
322	<div·class="line"><a·id="l00304"·name="l00304"></a><span·class="lineno">··304</span><span·class="keyword">template</span>·<auto·state_t></div>	322	<div·class="line"><a·id="l00304"·name="l00304"></a><span·class="lineno">··304</span><span·class="keyword">template</span>·<auto·state_t></div>
323	<div·class="foldopen"·id="foldopen00305"·data-start="{"·data-end="};">	323	<div·class="foldopen"·id="foldopen00305"·data-start="{"·data-end="};">
324	<div·class="line"><a·id="l00305"·name="l00305"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html">··305</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1advanceable__alignment__coordinate__printer.html">advanceable_alignment_coordinate_printer</a><detail::advanceable_alignment_coordinate<state_t>></div>	324	<div·class="line"><a·id="l00305"·name="l00305"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html">··305</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1advanceable__alignment__coordinate__printer.html">advanceable_alignment_coordinate_printer</a><detail::advanceable_alignment_coordinate<state_t>></div>
325	<div·class="line"><a·id="l00306"·name="l00306"></a><span·class="lineno">··306</span>{</div>	325	<div·class="line"><a·id="l00306"·name="l00306"></a><span·class="lineno">··306</span>{</div>
326	<div·class="line"><a·id="l00312"·name="l00312"></a><span·class="lineno">··312</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·stream_t></div>	326	<div·class="line"><a·id="l00312"·name="l00312"></a><span·class="lineno">··312</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·stream_t></div>
327	<div·class="foldopen"·id="foldopen00313"·data-start="{"·data-end="}">	327	<div·class="foldopen"·id="foldopen00313"·data-start="{"·data-end="}">
328	<div·class="line"><a·id="l00313"·name="l00313"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html#a326563f29a3ffeb029095e3390cc9584">··313</a></span>····<span·class="keyword">constexpr</span>·<span·class="keywordtype">void</span>·<a·class="code·hl_function"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html#a326563f29a3ffeb029095e3390cc9584">operator()</a>(stream_t·&·stream,·detail::advanceable_alignment_coordinate<state_t>·<span·class="keyword">const</span>·arg)<span·class="keyword">·const</span></div>	328	<div·class="line"><a·id="l00313"·name="l00313"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html#a326563f29a3ffeb029095e3390cc9584">··313</a></span>····<span·class="keyword">constexpr</span>·<span·class="keywordtype">void</span>·<a·class="code·hl_function"·href="structseqan3_1_1advanceable__alignment__coordinate__printer_3_01detail_1_1advanceable__alignmentdfdebf28e21078ded4fcd10c393f729f.html#a326563f29a3ffeb029095e3390cc9584">operator()</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">stream_t</a>·&·stream,·detail::advanceable_alignment_coordinate<state_t>·<span·class="keyword">const</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.[·...·truncated·by·diffoscope;·len:·13,·SHA:·249f13cd36d7063c143e620466b766e9098ddea4258cfb686f08ae2cbeb1520b·...·])<span·class="keyword">·const</span></div>
329	<div·class="line"><a·id="l00314"·name="l00314"></a><span·class="lineno">··314</span><span·class="keyword">····</span>{</div>	329	<div·class="line"><a·id="l00314"·name="l00314"></a><span·class="lineno">··314</span><span·class="keyword">····</span>{</div>
330	<div·class="line"><a·id="l00315"·name="l00315"></a><span·class="lineno">··315</span>········stream·<<·<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a>(arg.first,·arg.second);</div>	330	<div·class="line"><a·id="l00315"·name="l00315"></a><span·class="lineno">··315</span>········stream·<<·<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">arg</a>.first,·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">arg</a>.second);</div>
331	<div·class="line"><a·id="l00316"·name="l00316"></a><span·class="lineno">··316</span>····}</div>	331	<div·class="line"><a·id="l00316"·name="l00316"></a><span·class="lineno">··316</span>····}</div>
332	</div>	332	</div>
333	<div·class="line"><a·id="l00317"·name="l00317"></a><span·class="lineno">··317</span>};</div>	333	<div·class="line"><a·id="l00317"·name="l00317"></a><span·class="lineno">··317</span>};</div>
334	</div>	334	</div>
335	<div·class="line"><a·id="l00318"·name="l00318"></a><span·class="lineno">··318</span>·</div>	335	<div·class="line"><a·id="l00318"·name="l00318"></a><span·class="lineno">··318</span>·</div>
336	<div·class="line"><a·id="l00319"·name="l00319"></a><span·class="lineno">··319</span>}·<span·class="comment">//·namespace·seqan3</span></div>	336	<div·class="line"><a·id="l00319"·name="l00319"></a><span·class="lineno">··319</span>}·<span·class="comment">//·namespace·seqan3</span></div>
		337	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
337	<div·class="ttc"·id="adebug__stream__type_8hpp_html"><div·class="ttname"><a·href="debug__stream__type_8hpp.html">debug_stream_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::debug_stream·and·related·types.</div></div>	338	<div·class="ttc"·id="adebug__stream__type_8hpp_html"><div·class="ttname"><a·href="debug__stream__type_8hpp.html">debug_stream_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::debug_stream·and·related·types.</div></div>
338	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">seqan3::field::offset</a></div><div·class="ttdeci">@·offset</div><div·class="ttdoc">Sequence·(seqan3::field::seq)·relative·start·position·(0-based),·unsigned·value.</div></div>	339	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">seqan3::field::offset</a></div><div·class="ttdeci">@·offset</div><div·class="ttdoc">Sequence·(seqan3::field::seq)·relative·start·position·(0-based),·unsigned·value.</div></div>
339	<div·class="ttc"·id="aiterator_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/iterator.html">iterator</a></div></div>	340	<div·class="ttc"·id="aiterator_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/iterator.html">iterator</a></div></div>
340	<div·class="ttc"·id="amake_signed_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/make_signed.html">std::make_signed_t</a></div></div>	341	<div·class="ttc"·id="amake_signed_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/make_signed.html">std::make_signed_t</a></div></div>
341	<div·class="ttc"·id="amatrix__coordinate_8hpp_html"><div·class="ttname"><a·href="matrix__coordinate_8hpp.html">matrix_coordinate.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::matrix_index,·seqan3::detail::matrix_coordinate·and·associated·strong·types.</div></div>	342	<div·class="ttc"·id="amatrix__coordinate_8hpp_html"><div·class="ttname"><a·href="matrix__coordinate_8hpp.html">matrix_coordinate.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::matrix_index,·seqan3::detail::matrix_coordinate·and·associated·strong·types.</div></div>
342	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	343	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
343	<div·class="ttc"·id="aoperator_cmp_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/rel_ops/operator_cmp.html">std::rel_ops::operator!=</a></div><div·class="ttdeci">T·operator!=(T...·args)</div></div>	344	<div·class="ttc"·id="aoperator_cmp_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/rel_ops/operator_cmp.html">std::rel_ops::operator!=</a></div><div·class="ttdeci">T·operator!=(T...·args)</div></div>


Offset 142, 30 lines modified		Offset 142, 30 lines modified
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span><span·class="preprocessor">#include·<<a·class="code"·href="alphabet_2quality_2concept_8hpp.html">seqan3/alphabet/quality/concept.hpp</a>></span></div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span><span·class="preprocessor">#include·<<a·class="code"·href="alphabet_2quality_2concept_8hpp.html">seqan3/alphabet/quality/concept.hpp</a>></span></div>
143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span><span·class="preprocessor">#include·<<a·class="code"·href="phred42_8hpp.html">seqan3/alphabet/quality/phred42.hpp</a>></span></div>	143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span><span·class="preprocessor">#include·<<a·class="code"·href="phred42_8hpp.html">seqan3/alphabet/quality/phred42.hpp</a>></span></div>
144	<div·class="line"><a·id="l00021"·name="l00021"></a><span·class="lineno">···21</span><span·class="preprocessor">#include·<<a·class="code"·href="qualified_8hpp.html">seqan3/alphabet/quality/qualified.hpp</a>></span></div>	144	<div·class="line"><a·id="l00021"·name="l00021"></a><span·class="lineno">···21</span><span·class="preprocessor">#include·<<a·class="code"·href="qualified_8hpp.html">seqan3/alphabet/quality/qualified.hpp</a>></span></div>
145	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span>·</div>	145	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span>·</div>
146	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno">···23</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	146	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno">···23</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
147	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>{</div>	147	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>{</div>
148	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>·</div>	148	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>·</div>
149	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga3d44c926f9d9d5ed2313960f0f0544a8">···31</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">dna4q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<dna4,·phred42></a>;</div>	149	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga3d44c926f9d9d5ed2313960f0f0544a8">···31</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">dna4q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<dna4,·phred42></a>;</div>
150	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>·</div>	150	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>·</div>
151	<div·class="line"><a·id="l00038"·name="l00038"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga80093b8c5f27b4e5944055d94da4d7dd">···38</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">dna5q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<dna5,·phred42></a>;</div>	151	<div·class="line"><a·id="l00038"·name="l00038"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga80093b8c5f27b4e5944055d94da4d7dd">···38</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">dna5q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<dna5,·phred42></a>;</div>
152	<div·class="line"><a·id="l00039"·name="l00039"></a><span·class="lineno">···39</span>·</div>	152	<div·class="line"><a·id="l00039"·name="l00039"></a><span·class="lineno">···39</span>·</div>
153	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga98997ed0d378cff7a396617454f7d771">···45</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">rna4q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<rna4,·phred42></a>;</div>	153	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga98997ed0d378cff7a396617454f7d771">···45</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">rna4q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<rna4,·phred42></a>;</div>
154	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno">···46</span>·</div>	154	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno">···46</span>·</div>
155	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#gacc34afedf1380621a44d68d75755aa11">···52</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">rna5q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<rna5,·phred42></a>;</div>	155	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#gacc34afedf1380621a44d68d75755aa11">···52</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">rna5q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<rna5,·phred42></a>;</div>
156	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>·</div>	156	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>·</div>
157	<div·class="line"><a·id="l00059"·name="l00059"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga9191352786a8ad5b52852c19500559c4">···59</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">dna15q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<dna15,·phred42></a>;</div>	157	<div·class="line"><a·id="l00059"·name="l00059"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga9191352786a8ad5b52852c19500559c4">···59</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">dna15q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<dna15,·phred42></a>;</div>
158	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno">···60</span>·</div>	158	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno">···60</span>·</div>
159	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga59ca5340690d7f712f6507cb64e6de2a">···66</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">rna15q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1qua~~lified~~.html">qualified<rna15,·phred42></a>;</div>	159	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno"><a·class="line"·href="group__alphabet__quality.html#ga59ca5340690d7f712f6507cb64e6de2a">···66</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">rna15q</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">qualified<rna15,·phred42></a>;</div>
160	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>·</div>	160	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>·</div>
161	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>}·<span·class="comment">//·namespace·seqan3</span></div>	161	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>}·<span·class="comment">//·namespace·seqan3</span></div>
162	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>	162	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>
163	<div·class="ttc"·id="aalphabet_2quality_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2quality_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Quality·alphabet·concept.</div></div>	163	<div·class="ttc"·id="aalphabet_2quality_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2quality_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Quality·alphabet·concept.</div></div>
164	<div·class="ttc"·id="aclassseqan3_1_1qua~~lified~~_html"><div·class="ttname"><a·href="classseqan3_1_1qua~~lified~~.html">seqan3::qua~~lified~~</a></div><div·class="ttdoc">Jo~~ins·an~~·arbitr~~ary~~·~~alphabe~~t·~~with~~·a·qu~~ality~~·a~~lph~~abet.</div><div·class="ttdef"><b>~~Defi~~nition~~</b>~~·qualified~~.hpp:~~59</div></div>	164	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>[·...·truncated·by·diffoscope;·len:·38,·SHA:·e8112aa58c64638db11116cb71f1582f101e6730035dbe24c5dc141a8f877b11·...·]9</div></div>
165	<div·class="ttc"·id="adna15_8hpp_html"><div·class="ttname"><a·href="dna15_8hpp.html">dna15.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna15,·container·aliases·and·string·literals.</div></div>	165	<div·class="ttc"·id="adna15_8hpp_html"><div·class="ttname"><a·href="dna15_8hpp.html">dna15.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna15,·container·aliases·and·string·literals.</div></div>
166	<div·class="ttc"·id="adna4_8hpp_html"><div·class="ttname"><a·href="dna4_8hpp.html">dna4.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna4,·container·aliases·and·string·literals.</div></div>	166	<div·class="ttc"·id="adna4_8hpp_html"><div·class="ttname"><a·href="dna4_8hpp.html">dna4.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna4,·container·aliases·and·string·literals.</div></div>
167	<div·class="ttc"·id="adna5_8hpp_html"><div·class="ttname"><a·href="dna5_8hpp.html">dna5.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna5,·container·aliases·and·string·literals.</div></div>	167	<div·class="ttc"·id="adna5_8hpp_html"><div·class="ttname"><a·href="dna5_8hpp.html">dna5.hpp</a></div><div·class="ttdoc">Provides·seqan3::dna5,·container·aliases·and·string·literals.</div></div>
168	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	168	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
169	<div·class="ttc"·id="aphred42_8hpp_html"><div·class="ttname"><a·href="phred42_8hpp.html">phred42.hpp</a></div><div·class="ttdoc">Provides·seqan3::phred42·quality·scores.</div></div>	169	<div·class="ttc"·id="aphred42_8hpp_html"><div·class="ttname"><a·href="phred42_8hpp.html">phred42.hpp</a></div><div·class="ttdoc">Provides·seqan3::phred42·quality·scores.</div></div>
170	<div·class="ttc"·id="aqualified_8hpp_html"><div·class="ttname"><a·href="qualified_8hpp.html">qualified.hpp</a></div><div·class="ttdoc">Provides·quality·alphabet·composites.</div></div>	170	<div·class="ttc"·id="aqualified_8hpp_html"><div·class="ttname"><a·href="qualified_8hpp.html">qualified.hpp</a></div><div·class="ttdoc">Provides·quality·alphabet·composites.</div></div>
171	<div·class="ttc"·id="arna15_8hpp_html"><div·class="ttname"><a·href="rna15_8hpp.html">rna15.hpp</a></div><div·class="ttdoc">Provides·seqan3::rna15,·container·aliases·and·string·literals.</div></div>	171	<div·class="ttc"·id="arna15_8hpp_html"><div·class="ttname"><a·href="rna15_8hpp.html">rna15.hpp</a></div><div·class="ttdoc">Provides·seqan3::rna15,·container·aliases·and·string·literals.</div></div>


Offset 141, 35 lines modified		Offset 141, 36 lines modified
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>{</div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>{</div>
142	<div·class="foldopen"·id="foldopen00035"·data-start="{"·data-end="};">	142	<div·class="foldopen"·id="foldopen00035"·data-start="{"·data-end="};">
143	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html">···35</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·:·<span·class="keyword">private</span>·<a·class="code·hl_struct"·href="structseqan3_1_1pipeable__config__element.html">pipeable_config_element</a></div>	143	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html">···35</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·:·<span·class="keyword">private</span>·<a·class="code·hl_struct"·href="structseqan3_1_1pipeable__config__element.html">pipeable_config_element</a></div>
144	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>{</div>	144	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>{</div>
145	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span><span·class="keyword">public</span>:</div>	145	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span><span·class="keyword">public</span>:</div>
146	<div·class="line"><a·id="l00039"·name="l00039"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">···39</a></span>····int32_t·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>{<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/numeric_limits/lowest.html">std::numeric_limits<int32_t>::lowest</a>()};</div>	146	<div·class="line"><a·id="l00039"·name="l00039"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">···39</a></span>····int32_t·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>{<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/numeric_limits/lowest.html">std::numeric_limits<int32_t>::lowest</a>()};</div>
147	<div·class="line"><a·id="l00040"·name="l00040"></a><span·class="lineno">···40</span>·</div>	147	<div·class="line"><a·id="l00040"·name="l00040"></a><span·class="lineno">···40</span>·</div>
148	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">···44</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">min_score</a>()·noexcept·=·default;······························</div>	148	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">···44</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">min_score</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······························</div>
149	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a0fff9f1a7e16244049f79d8869d3ce51">···45</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score~~</a>~~·~~const~~·&a~~mp;)·no~~exc~~ept·=·d~~e~~fault~~;·············</div>	149	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a0fff9f1a7e16244049f79d8869d3ce51">···45</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">mi[·...·truncated·by·diffoscope;·len:·271,·SHA:·14598a9b5bdd2210074f49341661c8c33a64446ab81e866c17cb5528541585ec·...·];·············</div>
150	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#ab7f5bb253c3e477cb2ad011a8dc94e94">···46</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score~~</a>~~·&a~~mp;&~~a~~mp;)·no~~exce~~pt·=·~~d~~efault~~;··················</div>	150	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#ab7f5bb253c3e477cb2ad011a8dc94e94">···46</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">mi[·...·truncated·by·diffoscope;·len:·194,·SHA:·4f6bd024bf10ddd78b60ad6af181added11dbeae333712e00f9fd294b1002bcd·...·];··················</div>
151	<div·class="line"><a·id="l00047"·name="l00047"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a750fa66a5f5ebcbf8512f580a8965da2">···47</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·&·operator=(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·const·&)·noexcept·=·default;·</div>
152	<div·class="line"><a·id="l00048"·name="l00048"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a~~9680b9cb62b87044~~81~~e02ed4c5fa~~d6aa">···48</a></span>····~~constexpr~~·<a·class="code·hl_class"·href="classseqan3_1_1~~align~~__cf~~g_1_1~~min__s~~cor~~e.html">min_s[·...·truncated·by·diffoscope;·len:·152,·SHA:·3~~414~~d0~~9fdbb2f6c5627f7b4ad~~31007~~53aca5~~eb~~73d~~10d9~~5d485~~5~~3dc2eb2656959~~·...·]·</div>	151	<div·class="line"><a·id="l00047"·name="l00047"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a750fa66a5f5ebcbf8512f580a8965da2">···47</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·cla[·...·truncated·by·diffoscope;·len:·528,·SHA:·5a9d02005a9944087d3f327931f72cf56feb9ef917b936226152e9d31e90fd8c·...·]·</div>
		152	<div·class="line"><a·id="l00048"·name="l00048"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a9680b9cb62b8704481e02ed4c5fad6aa">···48</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······</div>
153	<div·class="line"><a·id="l00049"·name="l00049"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a99b4b38b16151a9851af03292ff18ab9">···49</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>()·noexcept·=·default;·······································</div>	153	<div·class="line"><a·id="l00049"·name="l00049"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a99b4b38b16151a9851af03292ff18ab9">···49</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·······································</div>
154	<div·class="line"><a·id="l00050"·name="l00050"></a><span·class="lineno">···50</span>·</div>	154	<div·class="line"><a·id="l00050"·name="l00050"></a><span·class="lineno">···50</span>·</div>
155	<div·class="foldopen"·id="foldopen00055"·data-start="{"·data-end="}">	155	<div·class="foldopen"·id="foldopen00055"·data-start="{"·data-end="}">
156	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a43c7b2ced603a6385f17c8ccf8677dda">···55</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(int32_t·const·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>)·:·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>{<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>}</div>	156	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a43c7b2ced603a6385f17c8ccf8677dda">···55</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1min__score.html">min_score</a>(int32_t·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html"[·...·truncated·by·diffoscope;·len:·10,·SHA:·8b3eb5d65f366d4eb4540e0cfa9cef549de1fbc9aef77f3407e58785eb9e0c76·...·]·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>)·:·<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>{<a·class="code·hl_variable"·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">score</a>}</div>
157	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>····{}</div>	157	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>····{}</div>
158	</div>	158	</div>
159	<div·class="line"><a·id="l00058"·name="l00058"></a><span·class="lineno">···58</span>·</div>	159	<div·class="line"><a·id="l00058"·name="l00058"></a><span·class="lineno">···58</span>·</div>
160	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a9448f33c8f4d800ec31fb1b4feb8377c">···60</a></span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·seqan3::detail::align_config_id·<span·class="keywordtype">id</span>{seqan3::detail::align_config_id::min_score};</div>	160	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1min__score.html#a9448f33c8f4d800ec31fb1b4feb8377c">···60</a></span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·seqan3::detail::align_config_id·<span·class="keywordtype">id</span>{seqan3::detail::align_config_id::min_score};</div>
161	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>};</div>	161	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>};</div>
162	</div>	162	</div>
163	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span>·</div>	163	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span>·</div>
164	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span>}·<span·class="comment">//·namespace·seqan3::align_cfg</span></div>	164	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span>}·<span·class="comment">//·namespace·seqan3::align_cfg</span></div>
165	<div·class="ttc"·id="aalignment_2configuration_2detail_8hpp_html"><div·class="ttname"><a·href="alignment_2configuration_2detail_8hpp.html">detail.hpp</a></div><div·class="ttdoc">Provides·some·utility·functions·for·the·alignment·configurations.</div></div>	165	<div·class="ttc"·id="aalignment_2configuration_2detail_8hpp_html"><div·class="ttname"><a·href="alignment_2configuration_2detail_8hpp.html">detail.hpp</a></div><div·class="ttdoc">Provides·some·utility·functions·for·the·alignment·configurations.</div></div>
166	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html">seqan3::align_cfg::min_score</a></div><div·class="ttdoc">Sets·the·minimal·score·(maximal·errors)·allowed·during·an·distance·computation·e.g....</div><div·class="ttdef"><b>Definition</b>·align_config_min_score.hpp:36</div></div>	166	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html">seqan3::align_cfg::min_score</a></div><div·class="ttdoc">Sets·the·minimal·score·(maximal·errors)·allowed·during·an·distance·computation·e.g....</div><div·class="ttdef"><b>Definition</b>·align_config_min_score.hpp:36</div></div>
167	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html_a88e259a0d45d2639e50e8b4ffeaaa62e"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">seqan3::align_cfg::min_score::score</a></div><div·class="ttdeci">int32_t·score</div><div·class="ttdoc">Minimal·score·for·the·distance·computation·[default:·-infinity].</div><div·class="ttdef"><b>Definition</b>·align_config_min_score.hpp:39</div></div>	167	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html_a88e259a0d45d2639e50e8b4ffeaaa62e"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html#a88e259a0d45d2639e50e8b4ffeaaa62e">seqan3::align_cfg::min_score::score</a></div><div·class="ttdeci">int32_t·score</div><div·class="ttdoc">Minimal·score·for·the·distance·computation·[default:·-infinity].</div><div·class="ttdef"><b>Definition</b>·align_config_min_score.hpp:39</div></div>
168	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html_ac039fb264c6a89f1714c7984aed1c384"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">seqan3::align_cfg::min_score::min_score</a></div><div·class="ttdeci">constexpr·min_score()·noexcept=default</div><div·class="ttdoc">Defaulted.</div></div>	168	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1min__score_html_ac039fb264c6a89f1714c7984aed1c384"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1min__score.html#ac039fb264c6a89f1714c7984aed1c384">seqan3::align_cfg::min_score::min_score</a></div><div·class="ttdeci">constexpr·min_score()·noexcept=default</div><div·class="ttdoc">Defaulted.</div></div>
		169	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
169	<div·class="ttc"·id="alimits_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/limits.html">limits</a></div></div>	170	<div·class="ttc"·id="alimits_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/limits.html">limits</a></div></div>
170	<div·class="ttc"·id="alowest_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/numeric_limits/lowest.html">std::numeric_limits::lowest</a></div><div·class="ttdeci">T·lowest(T...·args)</div></div>	171	<div·class="ttc"·id="alowest_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/numeric_limits/lowest.html">std::numeric_limits::lowest</a></div><div·class="ttdeci">T·lowest(T...·args)</div></div>
171	<div·class="ttc"·id="anamespaceseqan3_1_1align__cfg_html"><div·class="ttname"><a·href="namespaceseqan3_1_1align__cfg.html">seqan3::align_cfg</a></div><div·class="ttdoc">A·special·sub·namespace·for·the·alignment·configurations.</div><div·class="ttdef"><b>Definition</b>·align_config_band.hpp:22</div></div>	172	<div·class="ttc"·id="anamespaceseqan3_1_1align__cfg_html"><div·class="ttname"><a·href="namespaceseqan3_1_1align__cfg.html">seqan3::align_cfg</a></div><div·class="ttdoc">A·special·sub·namespace·for·the·alignment·configurations.</div><div·class="ttdef"><b>Definition</b>·align_config_band.hpp:22</div></div>
172	<div·class="ttc"·id="apipeable__config__element_8hpp_html"><div·class="ttname"><a·href="pipeable__config__element_8hpp.html">pipeable_config_element.hpp</a></div><div·class="ttdoc">Provides·seqan3::pipeable_config_element.</div></div>	173	<div·class="ttc"·id="apipeable__config__element_8hpp_html"><div·class="ttname"><a·href="pipeable__config__element_8hpp.html">pipeable_config_element.hpp</a></div><div·class="ttdoc">Provides·seqan3::pipeable_config_element.</div></div>
173	<div·class="ttc"·id="astructseqan3_1_1pipeable__config__element_html"><div·class="ttname"><a·href="structseqan3_1_1pipeable__config__element.html">seqan3::pipeable_config_element</a></div><div·class="ttdoc">Adds·pipe·interface·to·configuration·elements.</div><div·class="ttdef"><b>Definition</b>·pipeable_config_element.hpp:29</div></div>	174	<div·class="ttc"·id="astructseqan3_1_1pipeable__config__element_html"><div·class="ttname"><a·href="structseqan3_1_1pipeable__config__element.html">seqan3::pipeable_config_element</a></div><div·class="ttdoc">Adds·pipe·interface·to·configuration·elements.</div><div·class="ttdef"><b>Definition</b>·pipeable_config_element.hpp:29</div></div>
174	</div><!--·fragment·--></div><!--·contents·-->	175	</div><!--·fragment·--></div><!--·contents·-->
175	</div><!--·doc-content·-->	176	</div><!--·doc-content·-->


Offset 162, 29 lines modified		Offset 162, 30 lines modified
162	</div>	162	</div>
163	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>·</div>	163	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>·</div>
164	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·seqan3::detail::align_config_id·<span·class="keywordtype">id</span>{seqan3::detail::align_config_id::scoring};</div>	164	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·seqan3::detail::align_config_id·<span·class="keywordtype">id</span>{seqan3::detail::align_config_id::scoring};</div>
165	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>};</div>	165	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>};</div>
166	</div>	166	</div>
167	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·</div>	167	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·</div>
168	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·scheme_t></div>	168	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·scheme_t></div>
169	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">···80</a></span><a·class="code·hl_function"·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">scoring_scheme</a>(scheme_t)·->·<a·class="code·hl_class"·href="classseqan3_1_1~~align__cf~~g_1_1scor~~ing~~__sc~~hem~~e.html">scoring_scheme<std::remove_cvref_t<scheme_t></a>>;</div>	169	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">···80</a></span><a·class="code·hl_function"·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">scoring_scheme</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">scheme_t</a>)·->·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">scoring_scheme<std::remove_cvref_t<scheme_t></a>>;</div>
170	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>·</div>	170	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>·</div>
171	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>}·<span·class="comment">//·namespace·seqan3::align_cfg</span></div>	171	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>}·<span·class="comment">//·namespace·seqan3::align_cfg</span></div>
172	<div·class="ttc"·id="aalignment_2configuration_2detail_8hpp_html"><div·class="ttname"><a·href="alignment_2configuration_2detail_8hpp.html">detail.hpp</a></div><div·class="ttdoc">Provides·some·utility·functions·for·the·alignment·configurations.</div></div>	172	<div·class="ttc"·id="aalignment_2configuration_2detail_8hpp_html"><div·class="ttname"><a·href="alignment_2configuration_2detail_8hpp.html">detail.hpp</a></div><div·class="ttdoc">Provides·some·utility·functions·for·the·alignment·configurations.</div></div>
173	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>	173	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>
174	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html">seqan3::align_cfg::scoring_scheme</a></div><div·class="ttdoc">Sets·the·scoring·scheme·for·the·alignment·algorithm.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:42</div></div>	174	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html">seqan3::align_cfg::scoring_scheme</a></div><div·class="ttdoc">Sets·the·scoring·scheme·for·the·alignment·algorithm.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:42</div></div>
175	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a11d09d10278cc51c0bf0701a3c1caf2f"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a11d09d10278cc51c0bf0701a3c1caf2f">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme_t·scheme)</div><div·class="ttdoc">Initialises·the·scoring·scheme·config·with·the·given·scheme.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:64</div></div>	175	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a11d09d10278cc51c0bf0701a3c1caf2f"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a11d09d10278cc51c0bf0701a3c1caf2f">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme_t·scheme)</div><div·class="ttdoc">Initialises·the·scoring·scheme·config·with·the·given·scheme.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:64</div></div>
176	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a1ec2c51cf5699c3805b0d57dc3a6daab"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">scoring_scheme(scheme_t)·->·scoring_scheme<·std::remove_cvref_t<·scheme_t·>·></div><div·class="ttdoc">Deduces·the·scoring·scheme·type·from·the·constructor·argument.</div></div>	176	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a1ec2c51cf5699c3805b0d57dc3a6daab"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a1ec2c51cf5699c3805b0d57dc3a6daab">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">scoring_scheme(scheme_t)·->·scoring_scheme<·std::remove_cvref_t<·scheme_t·>·></div><div·class="ttdoc">Deduces·the·scoring·scheme·type·from·the·constructor·argument.</div></div>
177	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a2d2448c8160622379bd680f0f54d8a81"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a2d2448c8160622379bd680f0f54d8a81">seqan3::align_cfg::scoring_scheme::scheme</a></div><div·class="ttdeci">scoring_scheme_t·scheme</div><div·class="ttdoc">The·scoring·scheme·to·be·used·in·the·alignment·algorithm.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:45</div></div>	177	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a2d2448c8160622379bd680f0f54d8a81"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a2d2448c8160622379bd680f0f54d8a81">seqan3::align_cfg::scoring_scheme::scheme</a></div><div·class="ttdeci">scoring_scheme_t·scheme</div><div·class="ttdoc">The·scoring·scheme·to·be·used·in·the·alignment·algorithm.</div><div·class="ttdef"><b>Definition</b>·align_config_scoring_scheme.hpp:45</div></div>
178	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a797b85aea9fd8cdb628c0aa797a62c41"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a797b85aea9fd8cdb628c0aa797a62c41">seqan3::align_cfg::scoring_scheme::operator=</a></div><div·class="ttdeci">constexpr·scoring_scheme·&·operator=(scoring_scheme·&&)=default</div><div·class="ttdoc">Defaulted.</div></div>	178	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_a797b85aea9fd8cdb628c0aa797a62c41"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#a797b85aea9fd8cdb628c0aa797a62c41">seqan3::align_cfg::scoring_scheme::operator=</a></div><div·class="ttdeci">constexpr·scoring_scheme·&·operator=(scoring_scheme·&&)=default</div><div·class="ttdoc">Defaulted.</div></div>
179	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ab4f0b41bee83b0ae63b023eb007edcf7"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ab4f0b41bee83b0ae63b023eb007edcf7">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme()=default</div><div·class="ttdoc">Defaulted.</div></div>	179	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ab4f0b41bee83b0ae63b023eb007edcf7"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ab4f0b41bee83b0ae63b023eb007edcf7">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme()=default</div><div·class="ttdoc">Defaulted.</div></div>
180	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ac0396e02e78070fa1ef951b6e51f55d1"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ac0396e02e78070fa1ef951b6e51f55d1">seqan3::align_cfg::scoring_scheme::operator=</a></div><div·class="ttdeci">constexpr·scoring_scheme·&·operator=(scoring_scheme·const·&)=default</div><div·class="ttdoc">Defaulted.</div></div>	180	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ac0396e02e78070fa1ef951b6e51f55d1"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ac0396e02e78070fa1ef951b6e51f55d1">seqan3::align_cfg::scoring_scheme::operator=</a></div><div·class="ttdeci">constexpr·scoring_scheme·&·operator=(scoring_scheme·const·&)=default</div><div·class="ttdoc">Defaulted.</div></div>
181	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ac5e31cb138b0368a92746d2c8ca7307f"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ac5e31cb138b0368a92746d2c8ca7307f">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme·const·&)=default</div><div·class="ttdoc">Defaulted.</div></div>	181	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ac5e31cb138b0368a92746d2c8ca7307f"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ac5e31cb138b0368a92746d2c8ca7307f">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme·const·&)=default</div><div·class="ttdoc">Defaulted.</div></div>
182	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ad43c8f0a50de5e767c0a260938423abd"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ad43c8f0a50de5e767c0a260938423abd">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme·&&)=default</div><div·class="ttdoc">Defaulted.</div></div>	182	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ad43c8f0a50de5e767c0a260938423abd"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ad43c8f0a50de5e767c0a260938423abd">seqan3::align_cfg::scoring_scheme::scoring_scheme</a></div><div·class="ttdeci">constexpr·scoring_scheme(scoring_scheme·&&)=default</div><div·class="ttdoc">Defaulted.</div></div>
183	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ae55f02f34a0b0fdd0dd1edec321979d5"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ae55f02f34a0b0fdd0dd1edec321979d5">seqan3::align_cfg::scoring_scheme::~scoring_scheme</a></div><div·class="ttdeci">~scoring_scheme()=default</div><div·class="ttdoc">Defaulted.</div></div>	183	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1scoring__scheme_html_ae55f02f34a0b0fdd0dd1edec321979d5"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1scoring__scheme.html#ae55f02f34a0b0fdd0dd1edec321979d5">seqan3::align_cfg::scoring_scheme::~scoring_scheme</a></div><div·class="ttdeci">~scoring_scheme()=default</div><div·class="ttdoc">Defaulted.</div></div>
		184	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
184	<div·class="ttc"·id="anamespaceseqan3_1_1align__cfg_html"><div·class="ttname"><a·href="namespaceseqan3_1_1align__cfg.html">seqan3::align_cfg</a></div><div·class="ttdoc">A·special·sub·namespace·for·the·alignment·configurations.</div><div·class="ttdef"><b>Definition</b>·align_config_band.hpp:22</div></div>	185	<div·class="ttc"·id="anamespaceseqan3_1_1align__cfg_html"><div·class="ttname"><a·href="namespaceseqan3_1_1align__cfg.html">seqan3::align_cfg</a></div><div·class="ttdoc">A·special·sub·namespace·for·the·alignment·configurations.</div><div·class="ttdef"><b>Definition</b>·align_config_band.hpp:22</div></div>
185	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>	186	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>
186	<div·class="ttc"·id="apipeable__config__element_8hpp_html"><div·class="ttname"><a·href="pipeable__config__element_8hpp.html">pipeable_config_element.hpp</a></div><div·class="ttdoc">Provides·seqan3::pipeable_config_element.</div></div>	187	<div·class="ttc"·id="apipeable__config__element_8hpp_html"><div·class="ttname"><a·href="pipeable__config__element_8hpp.html">pipeable_config_element.hpp</a></div><div·class="ttdoc">Provides·seqan3::pipeable_config_element.</div></div>
187	<div·class="ttc"·id="ascoring__scheme__concept_8hpp_html"><div·class="ttname"><a·href="scoring__scheme__concept_8hpp.html">scoring_scheme_concept.hpp</a></div><div·class="ttdoc">Provides·seqan3::scoring_scheme_for.</div></div>	188	<div·class="ttc"·id="ascoring__scheme__concept_8hpp_html"><div·class="ttname"><a·href="scoring__scheme__concept_8hpp.html">scoring_scheme_concept.hpp</a></div><div·class="ttdoc">Provides·seqan3::scoring_scheme_for.</div></div>
188	<div·class="ttc"·id="astructseqan3_1_1pipeable__config__element_html"><div·class="ttname"><a·href="structseqan3_1_1pipeable__config__element.html">seqan3::pipeable_config_element</a></div><div·class="ttdoc">Adds·pipe·interface·to·configuration·elements.</div><div·class="ttdef"><b>Definition</b>·pipeable_config_element.hpp:29</div></div>	189	<div·class="ttc"·id="astructseqan3_1_1pipeable__config__element_html"><div·class="ttname"><a·href="structseqan3_1_1pipeable__config__element.html">seqan3::pipeable_config_element</a></div><div·class="ttdoc">Adds·pipe·interface·to·configuration·elements.</div><div·class="ttdef"><b>Definition</b>·pipeable_config_element.hpp:29</div></div>
189	</div><!--·fragment·--></div><!--·contents·-->	190	</div><!--·fragment·--></div><!--·contents·-->
190	</div><!--·doc-content·-->	191	</div><!--·doc-content·-->


Offset 154, 21 lines modified		Offset 154, 21 lines modified
154	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno">···31</span>{</div>	154	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno">···31</span>{</div>
155	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>·</div>	155	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>·</div>
156	<div·class="line"><a·id="l00127"·name="l00127"></a><span·class="lineno">··127</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·sequence_t,·<span·class="keyword">typename</span>·alignment_config_t></div>	156	<div·class="line"><a·id="l00127"·name="l00127"></a><span·class="lineno">··127</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·sequence_t,·<span·class="keyword">typename</span>·alignment_config_t></div>
157	<div·class="line"><a·id="l00128"·name="l00128"></a><span·class="lineno">··128</span>····<span·class="keyword">requires</span>·detail::align_pairwise_single_input<sequence_t></div>	157	<div·class="line"><a·id="l00128"·name="l00128"></a><span·class="lineno">··128</span>····<span·class="keyword">requires</span>·detail::align_pairwise_single_input<sequence_t></div>
158	<div·class="line"><a·id="l00129"·name="l00129"></a><span·class="lineno">··129</span>··········&&·std::copy_constructible<std::remove_reference_t<sequence_t>></div>	158	<div·class="line"><a·id="l00129"·name="l00129"></a><span·class="lineno">··129</span>··········&&·std::copy_constructible<std::remove_reference_t<sequence_t>></div>
159	<div·class="line"><a·id="l00130"·name="l00130"></a><span·class="lineno">··130</span>··········&&·detail::is_type_specialisation_of_v<alignment_config_t,·configuration></div>	159	<div·class="line"><a·id="l00130"·name="l00130"></a><span·class="lineno">··130</span>··········&&·detail::is_type_specialisation_of_v<alignment_config_t,·configuration></div>
160	<div·class="foldopen"·id="foldopen00131"·data-start="{"·data-end="}">	160	<div·class="foldopen"·id="foldopen00131"·data-start="{"·data-end="}">
161	<div·class="line"><a·id="l00131"·name="l00131"></a><span·class="lineno"><a·class="line"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">··131</a></span><span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_function"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">align_pairwise</a>(sequence_t·&&·<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>,·al~~ignm~~ent_conf~~ig_t~~·<span·class="keyword">const</span>·&·config)</div>	161	<div·class="line"><a·id="l00131"·name="l00131"></a><span·class="lineno"><a·class="line"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">··131</a></span><span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_function"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">align_pairwise</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">sequence_t</a>·&&·<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>,·<a·class="code·hl_class"·href[·...·truncated·by·diffoscope;·len:·65,·SHA:·fab159bc260ea73eda604a6c81286862c648487e022a9567b8db1232e6e64921·...·]·<span·class="keyword">const</span>·&·config)</div>
162	<div·class="line"><a·id="l00132"·name="l00132"></a><span·class="lineno">··132</span>{</div>	162	<div·class="line"><a·id="l00132"·name="l00132"></a><span·class="lineno">··132</span>{</div>
163	<div·class="line"><a·id="l00133"·name="l00133"></a><span·class="lineno">··133</span>····<span·class="keyword">using·</span>std::get;</div>	163	<div·class="line"><a·id="l00133"·name="l00133"></a><span·class="lineno">··133</span>····<span·class="keyword">using·</span>std::get;</div>
164	<div·class="line"><a·id="l00134"·name="l00134"></a><span·class="lineno">··134</span>·</div>	164	<div·class="line"><a·id="l00134"·name="l00134"></a><span·class="lineno">··134</span>·</div>
165	<div·class="line"><a·id="l00135"·name="l00135"></a><span·class="lineno">··135</span>····<span·class="keywordflow">if</span>·<span·class="keyword">constexpr</span>·(std::is_lvalue_reference_v<sequence_t>)·<span·class="comment">//·Forward·tuple·elements·as·references.</span></div>	165	<div·class="line"><a·id="l00135"·name="l00135"></a><span·class="lineno">··135</span>····<span·class="keywordflow">if</span>·<span·class="keyword">constexpr</span>·(std::is_lvalue_reference_v<sequence_t>)·<span·class="comment">//·Forward·tuple·elements·as·references.</span></div>
166	<div·class="line"><a·id="l00136"·name="l00136"></a><span·class="lineno">··136</span>····{</div>	166	<div·class="line"><a·id="l00136"·name="l00136"></a><span·class="lineno">··136</span>····{</div>
167	<div·class="line"><a·id="l00137"·name="l00137"></a><span·class="lineno">··137</span>········<span·class="keywordflow">return</span>·<a·class="code·hl_function"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">align_pairwise</a>(<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a>(get<0>(<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>),·get<1~~>~~(<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>)),·config);</div>	167	<div·class="line"><a·id="l00137"·name="l00137"></a><span·class="lineno">··137</span>········<span·class="keywordflow">return</span>·<a·class="code·hl_function"·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">align_pairwise</a>(<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">get<0></a>(<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>),·<a·class="code·hl_class"·href="classs[·...·truncated·by·diffoscope;·len:·51,·SHA:·958fa5dbe1a1fadc76f31bd840c8cde32035c0427d9ebabea79e0ac26ff1ffdc·...·](<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>)),·config);</div>
168	<div·class="line"><a·id="l00138"·name="l00138"></a><span·class="lineno">··138</span>····}</div>	168	<div·class="line"><a·id="l00138"·name="l00138"></a><span·class="lineno">··138</span>····}</div>
169	<div·class="line"><a·id="l00139"·name="l00139"></a><span·class="lineno">··139</span>····<span·class="keywordflow">else</span></div>	169	<div·class="line"><a·id="l00139"·name="l00139"></a><span·class="lineno">··139</span>····<span·class="keywordflow">else</span></div>
170	<div·class="line"><a·id="l00140"·name="l00140"></a><span·class="lineno">··140</span>····{</div>	170	<div·class="line"><a·id="l00140"·name="l00140"></a><span·class="lineno">··140</span>····{</div>
171	<div·class="line"><a·id="l00141"·name="l00141"></a><span·class="lineno">··141</span>········<span·class="keyword">static_assert</span>(std::tuple_size_v<std::remove_reference_t<sequence_t>>·==·2,</div>	171	<div·class="line"><a·id="l00141"·name="l00141"></a><span·class="lineno">··141</span>········<span·class="keyword">static_assert</span>(std::tuple_size_v<std::remove_reference_t<sequence_t>>·==·2,</div>
172	<div·class="line"><a·id="l00142"·name="l00142"></a><span·class="lineno">··142</span>······················<span·class="stringliteral">"Alignment·configuration·error:·Expects·exactly·two·sequences·for·pairwise·alignments."</span>);</div>	172	<div·class="line"><a·id="l00142"·name="l00142"></a><span·class="lineno">··142</span>······················<span·class="stringliteral">"Alignment·configuration·error:·Expects·exactly·two·sequences·for·pairwise·alignments."</span>);</div>
173	<div·class="line"><a·id="l00143"·name="l00143"></a><span·class="lineno">··143</span>·</div>	173	<div·class="line"><a·id="l00143"·name="l00143"></a><span·class="lineno">··143</span>·</div>
174	<div·class="line"><a·id="l00144"·name="l00144"></a><span·class="lineno">··144</span>········<span·class="keyword">static_assert</span>(std::ranges::viewable_range<std::tuple_element_t<0,·std::remove_reference_t<sequence_t>>></div>	174	<div·class="line"><a·id="l00144"·name="l00144"></a><span·class="lineno">··144</span>········<span·class="keyword">static_assert</span>(std::ranges::viewable_range<std::tuple_element_t<0,·std::remove_reference_t<sequence_t>>></div>
Offset 245, 14 lines modified		Offset 245, 15 lines modified
245	<div·class="ttc"·id="aalgorithm__result__generator__range_8hpp_html"><div·class="ttname"><a·href="algorithm__result__generator__range_8hpp.html">algorithm_result_generator_range.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::algorithm_result_generator_range.</div></div>	245	<div·class="ttc"·id="aalgorithm__result__generator__range_8hpp_html"><div·class="ttname"><a·href="algorithm__result__generator__range_8hpp.html">algorithm_result_generator_range.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::algorithm_result_generator_range.</div></div>
246	<div·class="ttc"·id="aalignment_2pairwise_2detail_2concept_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Provides·concepts·needed·internally·for·the·alignment·algorithms.</div></div>	246	<div·class="ttc"·id="aalignment_2pairwise_2detail_2concept_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Provides·concepts·needed·internally·for·the·alignment·algorithms.</div></div>
247	<div·class="ttc"·id="aalignment_2pairwise_2detail_2type__traits_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2type__traits_8hpp.html">type_traits.hpp</a></div><div·class="ttdoc">Provides·helper·type·traits·for·the·configuration·and·execution·of·the·alignment·algorithm.</div></div>	247	<div·class="ttc"·id="aalignment_2pairwise_2detail_2type__traits_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2type__traits_8hpp.html">type_traits.hpp</a></div><div·class="ttdoc">Provides·helper·type·traits·for·the·configuration·and·execution·of·the·alignment·algorithm.</div></div>
248	<div·class="ttc"·id="aalignment__configurator_8hpp_html"><div·class="ttname"><a·href="alignment__configurator_8hpp.html">alignment_configurator.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::alignment_selector.</div></div>	248	<div·class="ttc"·id="aalignment__configurator_8hpp_html"><div·class="ttname"><a·href="alignment__configurator_8hpp.html">alignment_configurator.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::alignment_selector.</div></div>
249	<div·class="ttc"·id="aalignment__result_8hpp_html"><div·class="ttname"><a·href="alignment__result_8hpp.html">alignment_result.hpp</a></div><div·class="ttdoc">Provides·seqan3::alignment_result.</div></div>	249	<div·class="ttc"·id="aalignment__result_8hpp_html"><div·class="ttname"><a·href="alignment__result_8hpp.html">alignment_result.hpp</a></div><div·class="ttdoc">Provides·seqan3::alignment_result.</div></div>
250	<div·class="ttc"·id="aall__view_8hpp_html"><div·class="ttname"><a·href="all__view_8hpp.html">all_view.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::all.</div></div>	250	<div·class="ttc"·id="aall__view_8hpp_html"><div·class="ttname"><a·href="all__view_8hpp.html">all_view.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::all.</div></div>
251	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>	251	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>
		252	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
252	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>	253	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
253	<div·class="ttc"·id="afunctional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/functional.html">functional</a></div></div>	254	<div·class="ttc"·id="afunctional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/functional.html">functional</a></div></div>
254	<div·class="ttc"·id="agroup__alignment__configuration_html_ga7e5c976aee36953bd9ff551677cc067a"><div·class="ttname"><a·href="group__alignment__configuration.html#ga7e5c976aee36953bd9ff551677cc067a">seqan3::align_cfg::parallel</a></div><div·class="ttdeci">seqan3::detail::parallel_mode<·std::integral_constant<·seqan3::detail::align_config_id,·seqan3::detail::align_config_id::parallel·>·>·parallel</div><div·class="ttdoc">Enables·the·parallel·execution·of·the·alignment·algorithm·if·possible·for·the·given·configuration.</div><div·class="ttdef"><b>Definition</b>·align_config_parallel.hpp:35</div></div>	255	<div·class="ttc"·id="agroup__alignment__configuration_html_ga7e5c976aee36953bd9ff551677cc067a"><div·class="ttname"><a·href="group__alignment__configuration.html#ga7e5c976aee36953bd9ff551677cc067a">seqan3::align_cfg::parallel</a></div><div·class="ttdeci">seqan3::detail::parallel_mode<·std::integral_constant<·seqan3::detail::align_config_id,·seqan3::detail::align_config_id::parallel·>·>·parallel</div><div·class="ttdoc">Enables·the·parallel·execution·of·the·alignment·algorithm·if·possible·for·the·given·configuration.</div><div·class="ttdef"><b>Definition</b>·align_config_parallel.hpp:35</div></div>
255	<div·class="ttc"·id="agroup__alignment__pairwise_html_gadaa2ea56040a15d60f41ed022dd47389"><div·class="ttname"><a·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">seqan3::align_pairwise</a></div><div·class="ttdeci">constexpr·auto·align_pairwise(sequence_t·&&seq,·alignment_config_t·const·&config)</div><div·class="ttdoc">Computes·the·pairwise·alignment·for·a·pair·of·sequences·or·a·range·over·sequence·pairs.</div><div·class="ttdef"><b>Definition</b>·align_pairwise.hpp:131</div></div>	256	<div·class="ttc"·id="agroup__alignment__pairwise_html_gadaa2ea56040a15d60f41ed022dd47389"><div·class="ttname"><a·href="group__alignment__pairwise.html#gadaa2ea56040a15d60f41ed022dd47389">seqan3::align_pairwise</a></div><div·class="ttdeci">constexpr·auto·align_pairwise(sequence_t·&&seq,·alignment_config_t·const·&config)</div><div·class="ttdoc">Computes·the·pairwise·alignment·for·a·pair·of·sequences·or·a·range·over·sequence·pairs.</div><div·class="ttdef"><b>Definition</b>·align_pairwise.hpp:131</div></div>
256	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seqan3::field::seq</a></div><div·class="ttdeci">@·seq</div><div·class="ttdoc">The·"sequence",·usually·a·range·of·nucleotides·or·amino·acids.</div></div>	257	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seqan3::field::seq</a></div><div·class="ttdeci">@·seq</div><div·class="ttdoc">The·"sequence",·usually·a·range·of·nucleotides·or·amino·acids.</div></div>
257	<div·class="ttc"·id="agroup__utility__views_html_ga8895889ddbf64acecd2024b8b60b1dca"><div·class="ttname"><a·href="group__utility__views.html#ga8895889ddbf64acecd2024b8b60b1dca">seqan3::views::zip</a></div><div·class="ttdeci">seqan::stl::views::zip·zip</div><div·class="ttdoc">A·view·adaptor·that·takes·several·views·and·returns·tuple-like·values·from·every·i-th·element·of·each...</div><div·class="ttdef"><b>Definition</b>·zip.hpp:24</div></div>	258	<div·class="ttc"·id="agroup__utility__views_html_ga8895889ddbf64acecd2024b8b60b1dca"><div·class="ttname"><a·href="group__utility__views.html#ga8895889ddbf64acecd2024b8b60b1dca">seqan3::views::zip</a></div><div·class="ttdeci">seqan::stl::views::zip·zip</div><div·class="ttdoc">A·view·adaptor·that·takes·several·views·and·returns·tuple-like·values·from·every·i-th·element·of·each...</div><div·class="ttdef"><b>Definition</b>·zip.hpp:24</div></div>
258	<div·class="ttc"·id="agroup__utility__views_html_gaeae83794d7bd83b6fd297f68d87f5f14"><div·class="ttname"><a·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">seqan3::views::chunk</a></div><div·class="ttdeci">seqan::stl::views::chunk·chunk</div><div·class="ttdoc">A·view·adaptor·that·divides·a·range·into·chunks.·<dl·class="no-api">This·entity·is·not·part·of·the·Se...</div><div·class="ttdef"><b>Definition</b>·chunk.hpp:23</div></div>	259	<div·class="ttc"·id="agroup__utility__views_html_gaeae83794d7bd83b6fd297f68d87f5f14"><div·class="ttname"><a·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">seqan3::views::chunk</a></div><div·class="ttdeci">seqan::stl::views::chunk·chunk</div><div·class="ttdoc">A·view·adaptor·that·divides·a·range·into·chunks.·<dl·class="no-api">This·entity·is·not·part·of·the·Se...</div><div·class="ttdef"><b>Definition</b>·chunk.hpp:23</div></div>


Offset 170, 17 lines modified		Offset 170, 17 lines modified
170	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>·</div>	170	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>·</div>
171	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span><span·class="keyword">template</span>·<std::ranges::viewable_range·first_sequence_t,·std::ranges::viewable_range·second_sequence_t></div>	171	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span><span·class="keyword">template</span>·<std::ranges::viewable_range·first_sequence_t,·std::ranges::viewable_range·second_sequence_t></div>
172	<div·class="line"><a·id="l00075"·name="l00075"></a><span·class="lineno">···75</span><span·class="keyword">struct·</span>make_pairwise_alignment_type</div>	172	<div·class="line"><a·id="l00075"·name="l00075"></a><span·class="lineno">···75</span><span·class="keyword">struct·</span>make_pairwise_alignment_type</div>
173	<div·class="line"><a·id="l00076"·name="l00076"></a><span·class="lineno">···76</span>{</div>	173	<div·class="line"><a·id="l00076"·name="l00076"></a><span·class="lineno">···76</span>{</div>
174	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno">···78</span>····<span·class="keyword">using·</span>first_aligned_t·=·<span·class="keyword">typename</span>·make_aligned_sequence_type<first_sequence_t>::type;</div>	174	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno">···78</span>····<span·class="keyword">using·</span>first_aligned_t·=·<span·class="keyword">typename</span>·make_aligned_sequence_type<first_sequence_t>::type;</div>
175	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span>····<span·class="keyword">using·</span>second_aligned_t·=·<span·class="keyword">typename</span>·make_aligned_sequence_type<second_sequence_t>::type;</div>	175	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span>····<span·class="keyword">using·</span>second_aligned_t·=·<span·class="keyword">typename</span>·make_aligned_sequence_type<second_sequence_t>::type;</div>
176	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno">···81</span>·</div>	176	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno">···81</span>·</div>
177	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>····<span·class="keyword">static_assert</span>(<a·class="code·hl_~~inte~~rface"·href="~~inte~~rfaceseqan3_1_1~~wri~~table__al~~ign~~ed__~~sequenc~~e.html">seqan3::writable_aligned_sequence<first_aligned_t></a>,</div>	177	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>····<span·class="keyword">static_assert</span>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::writable_aligned_sequence<first_aligned_t></a>,</div>
178	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>··················<span·class="stringliteral">"first_aligned_t·is·required·to·model·seqan3::writable_aligned_sequence!"</span>);</div>	178	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>··················<span·class="stringliteral">"first_aligned_t·is·required·to·model·seqan3::writable_aligned_sequence!"</span>);</div>
179	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>····<span·class="keyword">static_assert</span>(<a·class="code·hl_~~inte~~rface"·href="~~inte~~rfaceseqan3_1_1~~wri~~table__al~~ign~~ed__~~sequenc~~e.html">seqan3::writable_aligned_sequence<second_aligned_t></a>,</div>	179	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>····<span·class="keyword">static_assert</span>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::writable_aligned_sequence<second_aligned_t></a>,</div>
180	<div·class="line"><a·id="l00085"·name="l00085"></a><span·class="lineno">···85</span>··················<span·class="stringliteral">"second_aligned_t·is·required·to·model·seqan3::writable_aligned_sequence!"</span>);</div>	180	<div·class="line"><a·id="l00085"·name="l00085"></a><span·class="lineno">···85</span>··················<span·class="stringliteral">"second_aligned_t·is·required·to·model·seqan3::writable_aligned_sequence!"</span>);</div>
181	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>·</div>	181	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>·</div>
182	<div·class="line"><a·id="l00088"·name="l00088"></a><span·class="lineno">···88</span>····<span·class="keyword">using·</span>type·=·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple.html">std::tuple<first_aligned_t,·second_aligned_t></a>;</div>	182	<div·class="line"><a·id="l00088"·name="l00088"></a><span·class="lineno">···88</span>····<span·class="keyword">using·</span>type·=·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/utility/tuple.html">std::tuple<first_aligned_t,·second_aligned_t></a>;</div>
183	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>};</div>	183	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>};</div>
184	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·</div>	184	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·</div>
185	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span><span·class="keyword">template</span>·<std::ranges::viewable_range·fst_sequence_t,·std::ranges::viewable_range·sec_sequence_t></div>	185	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span><span·class="keyword">template</span>·<std::ranges::viewable_range·fst_sequence_t,·std::ranges::viewable_range·sec_sequence_t></div>
186	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span><span·class="keyword">class·</span>aligned_sequence_builder</div>	186	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span><span·class="keyword">class·</span>aligned_sequence_builder</div>
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285	<div·class="line"><a·id="l00246"·name="l00246"></a><span·class="lineno">··246</span>};</div>	285	<div·class="line"><a·id="l00246"·name="l00246"></a><span·class="lineno">··246</span>};</div>
286	<div·class="line"><a·id="l00247"·name="l00247"></a><span·class="lineno">··247</span>·</div>	286	<div·class="line"><a·id="l00247"·name="l00247"></a><span·class="lineno">··247</span>·</div>
287	<div·class="line"><a·id="l00253"·name="l00253"></a><span·class="lineno">··253</span><span·class="keyword">template</span>·<std::ranges::viewable_range·fst_sequence_t,·std::ranges::viewable_range·sec_sequence_t></div>	287	<div·class="line"><a·id="l00253"·name="l00253"></a><span·class="lineno">··253</span><span·class="keyword">template</span>·<std::ranges::viewable_range·fst_sequence_t,·std::ranges::viewable_range·sec_sequence_t></div>
288	<div·class="line"><a·id="l00254"·name="l00254"></a><span·class="lineno">··254</span>aligned_sequence_builder(fst_sequence_t·&&,</div>	288	<div·class="line"><a·id="l00254"·name="l00254"></a><span·class="lineno">··254</span>aligned_sequence_builder(fst_sequence_t·&&,</div>
289	<div·class="line"><a·id="l00255"·name="l00255"></a><span·class="lineno">··255</span>·························sec_sequence_t·&&)·->·aligned_sequence_builder<fst_sequence_t,·sec_sequence_t>;</div>	289	<div·class="line"><a·id="l00255"·name="l00255"></a><span·class="lineno">··255</span>·························sec_sequence_t·&&)·->·aligned_sequence_builder<fst_sequence_t,·sec_sequence_t>;</div>
290	<div·class="line"><a·id="l00257"·name="l00257"></a><span·class="lineno">··257</span>}·<span·class="comment">//·namespace·seqan3::detail</span></div>	290	<div·class="line"><a·id="l00257"·name="l00257"></a><span·class="lineno">··257</span>}·<span·class="comment">//·namespace·seqan3::detail</span></div>
291	<div·class="ttc"·id="aaligned__sequence__concept_8hpp_html"><div·class="ttname"><a·href="aligned__sequence__concept_8hpp.html">aligned_sequence_concept.hpp</a></div><div·class="ttdoc">Includes·the·aligned_sequence·and·the·related·insert_gap·and·erase_gap·functions·to·enable·stl·contai...</div></div>	291	<div·class="ttc"·id="aaligned__sequence__concept_8hpp_html"><div·class="ttname"><a·href="aligned__sequence__concept_8hpp.html">aligned_sequence_concept.hpp</a></div><div·class="ttdoc">Includes·the·aligned_sequence·and·the·related·insert_gap·and·erase_gap·functions·to·enable·stl·contai...</div></div>
		292	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
292	<div·class="ttc"·id="aemplace_back_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/vector/emplace_back.html">std::vector::emplace_back</a></div><div·class="ttdeci">T·emplace_back(T...·args)</div></div>	293	<div·class="ttc"·id="aemplace_back_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/vector/emplace_back.html">std::vector::emplace_back</a></div><div·class="ttdeci">T·emplace_back(T...·args)</div></div>
293	<div·class="ttc"·id="agap__decorator_8hpp_html"><div·class="ttname"><a·href="gap__decorator_8hpp.html">gap_decorator.hpp</a></div><div·class="ttdoc">Provides·seqan3::gap_decorator.</div></div>	294	<div·class="ttc"·id="agap__decorator_8hpp_html"><div·class="ttname"><a·href="gap__decorator_8hpp.html">gap_decorator.hpp</a></div><div·class="ttdoc">Provides·seqan3::gap_decorator.</div></div>
294	<div·class="ttc"·id="agapped_8hpp_html"><div·class="ttname"><a·href="gapped_8hpp.html">gapped.hpp</a></div><div·class="ttdoc">Provides·seqan3::gapped.</div></div>	295	<div·class="ttc"·id="agapped_8hpp_html"><div·class="ttname"><a·href="gapped_8hpp.html">gapped.hpp</a></div><div·class="ttdoc">Provides·seqan3::gapped.</div></div>
295	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">seqan3::field::alignment</a></div><div·class="ttdeci">@·alignment</div><div·class="ttdoc">The·(pairwise)·alignment·stored·in·an·object·that·models·seqan3::detail::pairwise_alignment.</div></div>	296	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">seqan3::field::alignment</a></div><div·class="ttdeci">@·alignment</div><div·class="ttdoc">The·(pairwise)·alignment·stored·in·an·object·that·models·seqan3::detail::pairwise_alignment.</div></div>
296	<div·class="ttc"·id="agroup__utility__views_html_ga69179c36a9a49a93ecb65fcf0d89c882"><div·class="ttname"><a·href="group__utility__views.html#ga69179c36a9a49a93ecb65fcf0d89c882">seqan3::views::slice</a></div><div·class="ttdeci">constexpr·auto·slice</div><div·class="ttdoc">A·view·adaptor·that·returns·a·half-open·interval·on·the·underlying·range.</div><div·class="ttdef"><b>Definition</b>·slice.hpp:175</div></div>	297	<div·class="ttc"·id="agroup__utility__views_html_ga69179c36a9a49a93ecb65fcf0d89c882"><div·class="ttname"><a·href="group__utility__views.html#ga69179c36a9a49a93ecb65fcf0d89c882">seqan3::views::slice</a></div><div·class="ttdeci">constexpr·auto·slice</div><div·class="ttdoc">A·view·adaptor·that·returns·a·half-open·interval·on·the·underlying·range.</div><div·class="ttdef"><b>Definition</b>·slice.hpp:175</div></div>
297	<div·class="ttc"·id="ainterfaceseqan3_1_1writable__aligned__sequence_html"><div·class="ttname"><a·href="interfaceseqan3_1_1writable__aligned__sequence.html">writable_aligned_sequence</a></div><div·class="ttdoc">The·generic·concept·for·an·aligned·sequence·that·is·writable.</div></div>
298	<div·class="ttc"·id="ais__class__template__declarable_8hpp_html"><div·class="ttname"><a·href="is__class__template__declarable_8hpp.html">is_class_template_declarable.hpp</a></div><div·class="ttdoc">Provides·a·type·trait·for·verifying·valid·template·declarations.</div></div>	298	<div·class="ttc"·id="ais__class__template__declarable_8hpp_html"><div·class="ttname"><a·href="is__class__template__declarable_8hpp.html">is_class_template_declarable.hpp</a></div><div·class="ttdoc">Provides·a·type·trait·for·verifying·valid·template·declarations.</div></div>
299	<div·class="ttc"·id="alazy__conditional_8hpp_html"><div·class="ttname"><a·href="lazy__conditional_8hpp.html">lazy_conditional.hpp</a></div><div·class="ttdoc">Provides·lazy·template·instantiation·traits.</div></div>	299	<div·class="ttc"·id="alazy__conditional_8hpp_html"><div·class="ttname"><a·href="lazy__conditional_8hpp.html">lazy_conditional.hpp</a></div><div·class="ttdoc">Provides·lazy·template·instantiation·traits.</div></div>
300	<div·class="ttc"·id="amatrix__coordinate_8hpp_html"><div·class="ttname"><a·href="matrix__coordinate_8hpp.html">matrix_coordinate.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::matrix_index,·seqan3::detail::matrix_coordinate·and·associated·strong·types.</div></div>	300	<div·class="ttc"·id="amatrix__coordinate_8hpp_html"><div·class="ttname"><a·href="matrix__coordinate_8hpp.html">matrix_coordinate.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::matrix_index,·seqan3::detail::matrix_coordinate·and·associated·strong·types.</div></div>
301	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>	301	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>
302	<div·class="ttc"·id="apair_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/pair.html">std::pair</a></div></div>	302	<div·class="ttc"·id="apair_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/pair.html">std::pair</a></div></div>
303	<div·class="ttc"·id="aslice_8hpp_html"><div·class="ttname"><a·href="slice_8hpp.html">slice.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::slice.</div></div>	303	<div·class="ttc"·id="aslice_8hpp_html"><div·class="ttname"><a·href="slice_8hpp.html">slice.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::slice.</div></div>
304	<div·class="ttc"·id="atie_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a></div><div·class="ttdeci">T·tie(T...·args)</div></div>	304	<div·class="ttc"·id="atie_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/utility/tuple/tie.html">std::tie</a></div><div·class="ttdeci">T·tie(T...·args)</div></div>


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196	<div·class="line"><a·id="l00125"·name="l00125"></a><span·class="lineno">··125</span>····<span·class="keyword">constexpr</span>·alignment_algorithm·&·operator=(alignment_algorithm·&&)·=·<span·class="keywordflow">default</span>;······</div>	196	<div·class="line"><a·id="l00125"·name="l00125"></a><span·class="lineno">··125</span>····<span·class="keyword">constexpr</span>·alignment_algorithm·&·operator=(alignment_algorithm·&&)·=·<span·class="keywordflow">default</span>;······</div>
197	<div·class="line"><a·id="l00126"·name="l00126"></a><span·class="lineno">··126</span>····~alignment_algorithm()·=·<span·class="keywordflow">default</span>;·················································</div>	197	<div·class="line"><a·id="l00126"·name="l00126"></a><span·class="lineno">··126</span>····~alignment_algorithm()·=·<span·class="keywordflow">default</span>;·················································</div>
198	<div·class="line"><a·id="l00127"·name="l00127"></a><span·class="lineno">··127</span>·</div>	198	<div·class="line"><a·id="l00127"·name="l00127"></a><span·class="lineno">··127</span>·</div>
199	<div·class="line"><a·id="l00136"·name="l00136"></a><span·class="lineno">··136</span>····<span·class="keyword">explicit</span>·<span·class="keyword">constexpr</span>·alignment_algorithm(config_t·<span·class="keyword">const</span>·&·cfg)·:</div>	199	<div·class="line"><a·id="l00136"·name="l00136"></a><span·class="lineno">··136</span>····<span·class="keyword">explicit</span>·<span·class="keyword">constexpr</span>·alignment_algorithm(config_t·<span·class="keyword">const</span>·&·cfg)·:</div>
200	<div·class="line"><a·id="l00137"·name="l00137"></a><span·class="lineno">··137</span>········invoke_deferred_crtp_base<algorithm_policies_t,·alignment_algorithm<config_t,·algorithm_policies_t...>>{cfg}...,</div>	200	<div·class="line"><a·id="l00137"·name="l00137"></a><span·class="lineno">··137</span>········invoke_deferred_crtp_base<algorithm_policies_t,·alignment_algorithm<config_t,·algorithm_policies_t...>>{cfg}...,</div>
201	<div·class="line"><a·id="l00138"·name="l00138"></a><span·class="lineno">··138</span>········cfg_ptr{std::make_shared<config_t>(cfg)}</div>	201	<div·class="line"><a·id="l00138"·name="l00138"></a><span·class="lineno">··138</span>········cfg_ptr{std::make_shared<config_t>(cfg)}</div>
202	<div·class="line"><a·id="l00139"·name="l00139"></a><span·class="lineno">··139</span>····{</div>	202	<div·class="line"><a·id="l00139"·name="l00139"></a><span·class="lineno">··139</span>····{</div>
203	<div·class="line"><a·id="l00140"·name="l00140"></a><span·class="lineno">··140</span>········this->scoring_scheme·=·seqan3::get<align_cfg::scoring_scheme>(*cfg_ptr).scheme;</div>	203	<div·class="line"><a·id="l00140"·name="l00140"></a><span·class="lineno">··140</span>········this->scoring_scheme·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::get<align_cfg::scoring_scheme></a>(*cfg_ptr).scheme;</div>
204	<div·class="line"><a·id="l00141"·name="l00141"></a><span·class="lineno">··141</span>········this->initialise_alignment_state(*cfg_ptr);</div>	204	<div·class="line"><a·id="l00141"·name="l00141"></a><span·class="lineno">··141</span>········this->initialise_alignment_state(*cfg_ptr);</div>
205	<div·class="line"><a·id="l00142"·name="l00142"></a><span·class="lineno">··142</span>····}</div>	205	<div·class="line"><a·id="l00142"·name="l00142"></a><span·class="lineno">··142</span>····}</div>
206	<div·class="line"><a·id="l00144"·name="l00144"></a><span·class="lineno">··144</span>·</div>	206	<div·class="line"><a·id="l00144"·name="l00144"></a><span·class="lineno">··144</span>·</div>
207	<div·class="line"><a·id="l00190"·name="l00190"></a><span·class="lineno">··190</span>····<span·class="keyword">template</span>·<indexed_sequence_pair_range·indexed_sequence_pairs_t,·<span·class="keyword">typename</span>·callback_t></div>	207	<div·class="line"><a·id="l00190"·name="l00190"></a><span·class="lineno">··190</span>····<span·class="keyword">template</span>·<indexed_sequence_pair_range·indexed_sequence_pairs_t,·<span·class="keyword">typename</span>·callback_t></div>
208	<div·class="line"><a·id="l00191"·name="l00191"></a><span·class="lineno">··191</span>········<span·class="keyword">requires</span>·(!traits_t::is_vectorised)·&&·std::invocable<callback_t,·alignment_result_t></div>	208	<div·class="line"><a·id="l00191"·name="l00191"></a><span·class="lineno">··191</span>········<span·class="keyword">requires</span>·(!traits_t::is_vectorised)·&&·std::invocable<callback_t,·alignment_result_t></div>
209	<div·class="line"><a·id="l00192"·name="l00192"></a><span·class="lineno">··192</span>····<span·class="keywordtype">void</span>·<span·class="keyword">operator</span>()(indexed_sequence_pairs_t·&&·indexed_sequence_pairs,·callback_t·&&·callback)</div>	209	<div·class="line"><a·id="l00192"·name="l00192"></a><span·class="lineno">··192</span>····<span·class="keywordtype">void</span>·<span·class="keyword">operator</span>()(indexed_sequence_pairs_t·&&·indexed_sequence_pairs,·callback_t·&&·callback)</div>
210	<div·class="line"><a·id="l00193"·name="l00193"></a><span·class="lineno">··193</span>····{</div>	210	<div·class="line"><a·id="l00193"·name="l00193"></a><span·class="lineno">··193</span>····{</div>
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638	<div·class="ttc"·id="aalign__result__selector_8hpp_html"><div·class="ttname"><a·href="align__result__selector_8hpp.html">align_result_selector.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::align_result_selector.</div></div>	638	<div·class="ttc"·id="aalign__result__selector_8hpp_html"><div·class="ttname"><a·href="align__result__selector_8hpp.html">align_result_selector.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::align_result_selector.</div></div>
639	<div·class="ttc"·id="aaligned__allocator_8hpp_html"><div·class="ttname"><a·href="aligned__allocator_8hpp.html">aligned_allocator.hpp</a></div><div·class="ttdoc">Provides·seqan3::aligned_allocator.</div></div>	639	<div·class="ttc"·id="aaligned__allocator_8hpp_html"><div·class="ttname"><a·href="aligned__allocator_8hpp.html">aligned_allocator.hpp</a></div><div·class="ttdoc">Provides·seqan3::aligned_allocator.</div></div>
640	<div·class="ttc"·id="aaligned__sequence__builder_8hpp_html"><div·class="ttname"><a·href="aligned__sequence__builder_8hpp.html">aligned_sequence_builder.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::aligned_sequence_builder.</div></div>	640	<div·class="ttc"·id="aaligned__sequence__builder_8hpp_html"><div·class="ttname"><a·href="aligned__sequence__builder_8hpp.html">aligned_sequence_builder.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::aligned_sequence_builder.</div></div>
641	<div·class="ttc"·id="aalignment_2exception_8hpp_html"><div·class="ttname"><a·href="alignment_2exception_8hpp.html">exception.hpp</a></div><div·class="ttdoc">Includes·customized·exception·types·for·the·alignment·module·.</div></div>	641	<div·class="ttc"·id="aalignment_2exception_8hpp_html"><div·class="ttname"><a·href="alignment_2exception_8hpp.html">exception.hpp</a></div><div·class="ttdoc">Includes·customized·exception·types·for·the·alignment·module·.</div></div>
642	<div·class="ttc"·id="aalignment_2pairwise_2detail_2concept_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Provides·concepts·needed·internally·for·the·alignment·algorithms.</div></div>	642	<div·class="ttc"·id="aalignment_2pairwise_2detail_2concept_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Provides·concepts·needed·internally·for·the·alignment·algorithms.</div></div>
643	<div·class="ttc"·id="aalignment_2pairwise_2detail_2type__traits_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2type__traits_8hpp.html">type_traits.hpp</a></div><div·class="ttdoc">Provides·helper·type·traits·for·the·configuration·and·execution·of·the·alignment·algorithm.</div></div>	643	<div·class="ttc"·id="aalignment_2pairwise_2detail_2type__traits_8hpp_html"><div·class="ttname"><a·href="alignment_2pairwise_2detail_2type__traits_8hpp.html">type_traits.hpp</a></div><div·class="ttdoc">Provides·helper·type·traits·for·the·configuration·and·execution·of·the·alignment·algorithm.</div></div>
644	<div·class="ttc"·id="aallocator_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/memory/allocator.html">std::allocator</a></div></div>	644	<div·class="ttc"·id="aallocator_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/memory/allocator.html">std::allocator</a></div></div>
		645	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
645	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>	646	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
646	<div·class="ttc"·id="adeferred__crtp__base_8hpp_html"><div·class="ttname"><a·href="deferred__crtp__base_8hpp.html">deferred_crtp_base.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::deferred_crtp_base.</div></div>	647	<div·class="ttc"·id="adeferred__crtp__base_8hpp_html"><div·class="ttname"><a·href="deferred__crtp__base_8hpp.html">deferred_crtp_base.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::deferred_crtp_base.</div></div>
647	<div·class="ttc"·id="aelements_8hpp_html"><div·class="ttname"><a·href="elements_8hpp.html">elements.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::elements.</div></div>	648	<div·class="ttc"·id="aelements_8hpp_html"><div·class="ttname"><a·href="elements_8hpp.html">elements.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::elements.</div></div>
648	<div·class="ttc"·id="aempty__type_8hpp_html"><div·class="ttname"><a·href="empty__type_8hpp.html">empty_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::empty_type.</div></div>	649	<div·class="ttc"·id="aempty__type_8hpp_html"><div·class="ttname"><a·href="empty__type_8hpp.html">empty_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::empty_type.</div></div>
649	<div·class="ttc"·id="afunction__traits_8hpp_html"><div·class="ttname"><a·href="function__traits_8hpp.html">function_traits.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·for·use·on·functions.</div></div>	650	<div·class="ttc"·id="afunction__traits_8hpp_html"><div·class="ttname"><a·href="function__traits_8hpp.html">function_traits.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·for·use·on·functions.</div></div>
650	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">seqan3::field::offset</a></div><div·class="ttdeci">@·offset</div><div·class="ttdoc">Sequence·(seqan3::field::seq)·relative·start·position·(0-based),·unsigned·value.</div></div>	651	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">seqan3::field::offset</a></div><div·class="ttdeci">@·offset</div><div·class="ttdoc">Sequence·(seqan3::field::seq)·relative·start·position·(0-based),·unsigned·value.</div></div>
651	<div·class="ttc"·id="agroup__utility__type__list_html_ga09a3c2bfd6b570d24edcbd4c163c31bc"><div·class="ttname"><a·href="group__utility__type__list.html#ga09a3c2bfd6b570d24edcbd4c163c31bc">seqan3::list_traits::take</a></div><div·class="ttdeci">typename·decltype(detail::split_after<·i·>(list_t{}))::first_type·take</div><div·class="ttdoc">Return·a·seqan3::type_list·of·the·first·n·types·in·the·input·type·list.</div><div·class="ttdef"><b>Definition</b>·type_list/traits.hpp:374</div></div>	652	<div·class="ttc"·id="agroup__utility__type__list_html_ga09a3c2bfd6b570d24edcbd4c163c31bc"><div·class="ttname"><a·href="group__utility__type__list.html#ga09a3c2bfd6b570d24edcbd4c163c31bc">seqan3::list_traits::take</a></div><div·class="ttdeci">typename·decltype(detail::split_after<·i·>(list_t{}))::first_type·take</div><div·class="ttdoc">Return·a·seqan3::type_list·of·the·first·n·types·in·the·input·type·list.</div><div·class="ttdef"><b>Definition</b>·type_list/traits.hpp:374</div></div>


Offset 140, 36 lines modified		Offset 140, 36 lines modified
140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>	140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="foldopen"·id="foldopen00079"·data-start="{"·data-end="};">	143	<div·class="foldopen"·id="foldopen00079"·data-start="{"·data-end="};">
144	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html">···79</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa10li,·10></div>	144	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html">···79</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa10li,·10></div>
145	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span>{</div>	145	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span>{</div>
146	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno">···81</span><span·class="keyword">private</span>:</div>	146	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno">···81</span><span·class="keyword">private</span>:</div>
147	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1~~aminoacid~~__~~bas~~e.html">aminoacid_base<aa10li,·10></a>;</div>	147	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">aminoacid_base<aa10li,·10></a>;</div>
148	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>·</div>	148	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>·</div>
149	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	149	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
150	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>	150	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>
151	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>·</div>	151	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>·</div>
152	<div·class="line"><a·id="l00092"·name="l00092"></a><span·class="lineno">···92</span><span·class="keyword">public</span>:</div>	152	<div·class="line"><a·id="l00092"·name="l00092"></a><span·class="lineno">···92</span><span·class="keyword">public</span>:</div>
153	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#ad7b98d98bd61ae2f83132f05691b7ca5">···96</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa10li.html#ad7b98d98bd61ae2f83132f05691b7ca5">aa10li</a>()·noexcept·=·default;···························</div>	153	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#ad7b98d98bd61ae2f83132f05691b7ca5">···96</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa10li.html#ad7b98d98bd61ae2f83132f05691b7ca5">aa10li</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;···························</div>
154	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a5bfaa6e48093d7c8ca8a8df3f6aadd96">···97</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·const·&a~~mp;)~~·noexcept·=·defa~~ult~~;·············</div>	154	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a5bfaa6e48093d7c8ca8a8df3f6aadd96">···97</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·<a·class="code·hl_class"·href=[·...·truncated·by·diffoscope;·len:·229,·SHA:·a0a341da50349fe57b3fb1db34fd04d88804cf6b077fe405e6c5e6418ee3da36·...·];·············</div>
155	<div·class="line"><a·id="l00098"·name="l00098"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a23134e71828656e1c990a8c82709bcb4">···98</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·&&)·noexcept·=·defa~~ult~~;··················</div>	155	<div·class="line"><a·id="l00098"·name="l00098"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a23134e71828656e1c990a8c82709bcb4">···98</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·&&)·<a·class="code·hl_[·...·truncated·by·diffoscope;·len:·152,·SHA:·beca93f5ead8838f3f489d9ca39de6ac6326fd70c34f0dd889638e2d53158c8a·...·];··················</div>
156	<div·class="line"><a·id="l00099"·name="l00099"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a9a238e48718fcd4d0d5b30a74c74a91d">···99</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·&·operator=(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·const·&)·noexcept·=·default;·</div>
157	<div·class="line"><a·id="l00~~100~~"·name="l00~~100~~"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a8b~~3d3~~36~~b52c~~7~~4a34478b0~~5f30~~fe50ff~~9">··~~100~~</a></span>····~~constexpr~~·<a·class="code·hl_class"·href="classseqan3_1_1~~aa10li.h~~tm~~l">aa10li</a~~>·~~&·o~~pera~~tor=(~~<a·class="co[·...·truncated·by·diffoscope;·len:·94,·SHA:·0~~205~~f~~16e~~62d2259e92757~~4c8f~~2~~a00~~0ae~~333c300e844479d~~35c1f550~~1e8~~6ad217·...·]·</div>	156	<div·class="line"><a·id="l00099"·name="l00099"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a9a238e48718fcd4d0d5b30a74c74a91d">···99</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_clas[·...·truncated·by·diffoscope;·len:·470,·SHA:·0ece3b7cff78865ad0207e29572bcd00e97b49dd630906bf349f2566b6b92cbf·...·]·</div>
		157	<div·class="line"><a·id="l00100"·name="l00100"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a8b3d336b52c74a34478b05f30fe50ff9">··100</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······</div>
158	<div·class="line"><a·id="l00101"·name="l00101"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a875a55aa7b996b43d313d38dbdf998a4">··101</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>()·noexcept·=·default;····································</div>	158	<div·class="line"><a·id="l00101"·name="l00101"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10li.html#a875a55aa7b996b43d313d38dbdf998a4">··101</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa10li.html">aa10li</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;····································</div>
159	<div·class="line"><a·id="l00102"·name="l00102"></a><span·class="lineno">··102</span>·</div>	159	<div·class="line"><a·id="l00102"·name="l00102"></a><span·class="lineno">··102</span>·</div>
160	<div·class="line"><a·id="l00104"·name="l00104"></a><span·class="lineno">··104</span>····using·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	160	<div·class="line"><a·id="l00104"·name="l00104"></a><span·class="lineno">··104</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">using</a>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
161	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span>·</div>	161	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span>·</div>
162	<div·class="line"><a·id="l00107"·name="l00107"></a><span·class="lineno">··107</span>private:</div>	162	<div·class="line"><a·id="l00107"·name="l00107"></a><span·class="lineno">··107</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">private</a>:</div>
163	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>····static·constexpr·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'J'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'P'</span>};</div>	163	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'J'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'P'</span>};</div>
164	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span>·</div>	164	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span>·</div>
165	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·char_to_rank(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·<span·class="keyword">const</span>·chr)</div>	165	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·char_to_rank(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·<span·class="keyword">const</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">chr</a>)</div>
166	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>····{</div>	166	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>····{</div>
167	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>········<span·class="keyword">using·</span>index_t·=·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/make_unsigned.html">std::make_unsigned_t<char_type></a>;</div>	167	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>········<span·class="keyword">using·</span>index_t·=·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/make_unsigned.html">std::make_unsigned_t<char_type></a>;</div>
168	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>········<span·class="keywordflow">return</span>·char_to_rank_table[<span·class="keyword">static_cast<</span>index_t<span·class="keyword">></span>(chr)];</div>	168	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>········<span·class="keywordflow">return</span>·char_to_rank_table[<span·class="keyword">static_cast<</span>index_t<span·class="keyword">></span>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">chr</a>)];</div>
169	<div·class="line"><a·id="l00116"·name="l00116"></a><span·class="lineno">··116</span>····}</div>	169	<div·class="line"><a·id="l00116"·name="l00116"></a><span·class="lineno">··116</span>····}</div>
170	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>·</div>	170	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>·</div>
171	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>	171	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>
172	<div·class="line"><a·id="l00120"·name="l00120"></a><span·class="lineno">··120</span>····{</div>	172	<div·class="line"><a·id="l00120"·name="l00120"></a><span·class="lineno">··120</span>····{</div>
173	<div·class="line"><a·id="l00121"·name="l00121"></a><span·class="lineno">··121</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>	173	<div·class="line"><a·id="l00121"·name="l00121"></a><span·class="lineno">··121</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>
174	<div·class="line"><a·id="l00122"·name="l00122"></a><span·class="lineno">··122</span>····}</div>	174	<div·class="line"><a·id="l00122"·name="l00122"></a><span·class="lineno">··122</span>····}</div>
175	<div·class="line"><a·id="l00123"·name="l00123"></a><span·class="lineno">··123</span>·</div>	175	<div·class="line"><a·id="l00123"·name="l00123"></a><span·class="lineno">··123</span>·</div>
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Offset 141, 31 lines modified		Offset 141, 31 lines modified
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>	143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>
144	<div·class="foldopen"·id="foldopen00078"·data-start="{"·data-end="};">	144	<div·class="foldopen"·id="foldopen00078"·data-start="{"·data-end="};">
145	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html">···78</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa10murphy,·10></div>	145	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html">···78</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa10murphy,·10></div>
146	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span>{</div>	146	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span>{</div>
147	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span><span·class="keyword">private</span>:</div>	147	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno">···80</span><span·class="keyword">private</span>:</div>
148	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1~~aminoacid~~__~~bas~~e.html">aminoacid_base<aa10murphy,·10></a>;</div>	148	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno">···82</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">aminoacid_base<aa10murphy,·10></a>;</div>
149	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>·</div>	149	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>·</div>
150	<div·class="line"><a·id="l00085"·name="l00085"></a><span·class="lineno">···85</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	150	<div·class="line"><a·id="l00085"·name="l00085"></a><span·class="lineno">···85</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
151	<div·class="line"><a·id="l00088"·name="l00088"></a><span·class="lineno">···88</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>	151	<div·class="line"><a·id="l00088"·name="l00088"></a><span·class="lineno">···88</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>
152	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·</div>	152	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·</div>
153	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span><span·class="keyword">public</span>:</div>	153	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span><span·class="keyword">public</span>:</div>
154	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a4996c882b9cd34faeb7e50f374e4c19e">···95</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa10murphy.html#a4996c882b9cd34faeb7e50f374e4c19e">aa10murphy</a>()·noexcept·=·default;·······························</div>	154	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a4996c882b9cd34faeb7e50f374e4c19e">···95</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa10murphy.html#a4996c882b9cd34faeb7e50f374e4c19e">aa10murphy</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·······························</div>
155	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a97221522bc234ab45ea5f13d834cf6b7">···96</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·const·~~&)·n~~oexcept·=·defa~~ult~~;·············</div>	155	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a97221522bc234ab45ea5f13d834cf6b7">···96</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·<a·class="code[·...·truncated·by·diffoscope;·len:·245,·SHA:·675338196fa087d421e8e400034faee1f1da62cd1cac238e9151deb9ed976232·...·];·············</div>
156	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#afce0f5748b2e34f0a4a38309a12044bd">···97</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·&&)·noexcept·=·defa~~ult~~;··················</div>	156	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#afce0f5748b2e34f0a4a38309a12044bd">···97</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·&&)·<a[·...·truncated·by·diffoscope;·len:·168,·SHA:·f00b16fac3a2c2885c9372ae80c6320a3bcea5c4a8dc1c64d3fa58e17b903639·...·];··················</div>
157	<div·class="line"><a·id="l00098"·name="l00098"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a522aa7f983cfdca927a9b099044e1df4">···98</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·&·operator=(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·const·&)·noexcept·=·default;·</div>
158	<div·class="line"><a·id="l00099"·name="l00099"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a5~~8d3b66~~9fc~~050813~~78~~037d~~9~~51e~~4~~0abdc~~">···99</a></span>····~~constexpr~~·<a·class="code·hl_class"·href="classseqan3_1_1~~aa10mu~~rphy.html">~~aa10mur~~phy</a>·&a~~mp;·operator=(<a~~[·...·truncated·by·diffoscope;·len:·~~112~~,·SHA:·13da9632a2a~~8975~~6423~~605fc8a479~~eb191c420fc23e1~~3be5~~0317c688e91e9e41·...·]·</div>	157	<div·class="line"><a·id="l00098"·name="l00098"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a522aa7f983cfdca927a9b099044e1df4">···98</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_cl[·...·truncated·by·diffoscope;·len:·488,·SHA:·0c81f8a94ea4a0e10d6da57f3b1f7ee50dceb9144fab30163144060de49be6ee·...·]·</div>
		158	<div·class="line"><a·id="l00099"·name="l00099"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#a58d3b669fc05081378037d951e40abdc">···99</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······</div>
159	<div·class="line"><a·id="l00100"·name="l00100"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#acc66e910318ec1cde0e597dea6a8c717">··100</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>()·noexcept·=·default;········································</div>	159	<div·class="line"><a·id="l00100"·name="l00100"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa10murphy.html#acc66e910318ec1cde0e597dea6a8c717">··100</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa10murphy.html">aa10murphy</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;········································</div>
160	<div·class="line"><a·id="l00101"·name="l00101"></a><span·class="lineno">··101</span>·</div>	160	<div·class="line"><a·id="l00101"·name="l00101"></a><span·class="lineno">··101</span>·</div>
161	<div·class="line"><a·id="l00103"·name="l00103"></a><span·class="lineno">··103</span>····using·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	161	<div·class="line"><a·id="l00103"·name="l00103"></a><span·class="lineno">··103</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">using</a>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
162	<div·class="line"><a·id="l00105"·name="l00105"></a><span·class="lineno">··105</span>·</div>	162	<div·class="line"><a·id="l00105"·name="l00105"></a><span·class="lineno">··105</span>·</div>
163	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span>private:</div>	163	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">private</a>:</div>
164	<div·class="line"><a·id="l00108"·name="l00108"></a><span·class="lineno">··108</span>····static·constexpr·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'S'</span>};</div>	164	<div·class="line"><a·id="l00108"·name="l00108"></a><span·class="lineno">··108</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'S'</span>};</div>
165	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>·</div>	165	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>·</div>
166	<div·class="line"><a·id="l00111"·name="l00111"></a><span·class="lineno">··111</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>	166	<div·class="line"><a·id="l00111"·name="l00111"></a><span·class="lineno">··111</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>
167	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>····{</div>	167	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>····{</div>
168	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>	168	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>
169	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>····}</div>	169	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>····}</div>
170	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>·</div>	170	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>·</div>
171	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·char_to_rank(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·<span·class="keyword">const</span>·chr)</div>	171	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·char_to_rank(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·<span·class="keyword">const</span>·chr)</div>
Offset 237, 28 lines modified		Offset 237, 28 lines modified
237	<div·class="line"><a·id="l00188"·name="l00188"></a><span·class="lineno">··188</span>·</div>	237	<div·class="line"><a·id="l00188"·name="l00188"></a><span·class="lineno">··188</span>·</div>
238	<div·class="line"><a·id="l00189"·name="l00189"></a><span·class="lineno">··189</span><span·class="comment">//·------------------------------------------------------------------</span></div>	238	<div·class="line"><a·id="l00189"·name="l00189"></a><span·class="lineno">··189</span><span·class="comment">//·------------------------------------------------------------------</span></div>
239	<div·class="line"><a·id="l00190"·name="l00190"></a><span·class="lineno">··190</span><span·class="comment">//·literals</span></div>	239	<div·class="line"><a·id="l00190"·name="l00190"></a><span·class="lineno">··190</span><span·class="comment">//·literals</span></div>
240	<div·class="line"><a·id="l00191"·name="l00191"></a><span·class="lineno">··191</span><span·class="comment">//·------------------------------------------------------------------</span></div>	240	<div·class="line"><a·id="l00191"·name="l00191"></a><span·class="lineno">··191</span><span·class="comment">//·------------------------------------------------------------------</span></div>
241	<div·class="line"><a·id="l00192"·name="l00192"></a><span·class="lineno">··192</span><span·class="keyword">inline</span>·<span·class="keyword">namespace·</span>literals</div>	241	<div·class="line"><a·id="l00192"·name="l00192"></a><span·class="lineno">··192</span><span·class="keyword">inline</span>·<span·class="keyword">namespace·</span>literals</div>


Offset 141, 31 lines modified		Offset 141, 31 lines modified
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>	143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>
144	<div·class="foldopen"·id="foldopen00060"·data-start="{"·data-end="};">	144	<div·class="foldopen"·id="foldopen00060"·data-start="{"·data-end="};">
145	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html">···60</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa20,·20></div>	145	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html">···60</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa20,·20></div>
146	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>{</div>	146	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>{</div>
147	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span><span·class="keyword">private</span>:</div>	147	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span><span·class="keyword">private</span>:</div>
148	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno">···64</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1~~aminoacid~~__~~bas~~e.html">aminoacid_base<aa20,·20></a>;</div>	148	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno">···64</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">aminoacid_base<aa20,·20></a>;</div>
149	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>·</div>	149	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>·</div>
150	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	150	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
151	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>	151	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>
152	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·</div>	152	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·</div>
153	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span><span·class="keyword">public</span>:</div>	153	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span><span·class="keyword">public</span>:</div>
154	<div·class="line"><a·id="l00077"·name="l00077"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1">···77</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1">aa20</a>()·noexcept·=·default;·························</div>	154	<div·class="line"><a·id="l00077"·name="l00077"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1">···77</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa20.html#a133e070f0e703a2c9e7431794b36c9b1">aa20</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·························</div>
155	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a2d3f5079be9f204dd35f521ab68bd78d">···78</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·const·&)·noexcept·=·default;·············</div>
156	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#abb22f4f0e0e92794abc082d4829382b6">···79</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&&)·noexcept·=·default;··················</div>
157	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a929ce1bd12e4dcd67264286a853fa410">···80</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&·operator=(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·const·&)·noexcept·=·default;·</div>
158	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a2e9~~88261438c81~~2~~38194a~~f~~ebd5e~~61da1">···81</a></span>····~~constexpr~~·<a·class="code·hl_class"·href="classseqan3_1_1~~aa20.html">~~a~~a20</a>·&a~~m~~p;·~~ope~~rator=(~~<a·class="code·hl_c[·...·truncated·by·diffoscope;·len:·78,·SHA:·~~cc4~~3~~1d54b~~0~~86d289~~c~~8ad~~c~~7daa34fb2~~b58c309~~2b872d0fd5a~~a34~~e29~~6e5~~787fdc~~9·...·]······</div>	155	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a2d3f5079be9f204dd35f521ab68bd78d">···78</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·[·...·truncated·by·diffoscope;·len:·374,·SHA:·9dff34876f0f4887dc131c18eee0070b4909890adf76bb4a379d625dbaa54b9f·...·]······</div>
		156	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#abb22f4f0e0e92794abc082d4829382b6">···79</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;··················</div>
		157	<div·class="line"><a·id="l00080"·name="l00080"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a929ce1bd12e4dcd67264286a853fa410">···80</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">const</a>·&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·</div>
		158	<div·class="line"><a·id="l00081"·name="l00081"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a2e988261438c81238194afebd5e61da1">···81</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······</div>
159	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a09e28c1c34c95fd016c9b0b60d2b347c">···82</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>()·noexcept·=·default;··································</div>	159	<div·class="line"><a·id="l00082"·name="l00082"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa20.html#a09e28c1c34c95fd016c9b0b60d2b347c">···82</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa20.html">aa20</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;··································</div>
160	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>·</div>	160	<div·class="line"><a·id="l00083"·name="l00083"></a><span·class="lineno">···83</span>·</div>
161	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>····using·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	161	<div·class="line"><a·id="l00084"·name="l00084"></a><span·class="lineno">···84</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">using</a>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
162	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>·</div>	162	<div·class="line"><a·id="l00086"·name="l00086"></a><span·class="lineno">···86</span>·</div>
163	<div·class="line"><a·id="l00087"·name="l00087"></a><span·class="lineno">···87</span>private:</div>	163	<div·class="line"><a·id="l00087"·name="l00087"></a><span·class="lineno">···87</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">private</a>:</div>
164	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>····static·constexpr·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'D'</span>,·<span·class="charliteral">'E'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'L'</span>,</div>	164	<div·class="line"><a·id="l00089"·name="l00089"></a><span·class="lineno">···89</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'D'</span>,·<span·class="charliteral">'E'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'L'</span>,</div>
165	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·································································<span·class="charliteral">'M'</span>,·<span·class="charliteral">'N'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'Q'</span>,·<span·class="charliteral">'R'</span>,·<span·class="charliteral">'S'</span>,·<span·class="charliteral">'T'</span>,·<span·class="charliteral">'V'</span>,·<span·class="charliteral">'W'</span>,·<span·class="charliteral">'Y'</span>};</div>	165	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span>·································································<span·class="charliteral">'M'</span>,·<span·class="charliteral">'N'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'Q'</span>,·<span·class="charliteral">'R'</span>,·<span·class="charliteral">'S'</span>,·<span·class="charliteral">'T'</span>,·<span·class="charliteral">'V'</span>,·<span·class="charliteral">'W'</span>,·<span·class="charliteral">'Y'</span>};</div>
166	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>·</div>	166	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>·</div>
167	<div·class="line"><a·id="l00093"·name="l00093"></a><span·class="lineno">···93</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>	167	<div·class="line"><a·id="l00093"·name="l00093"></a><span·class="lineno">···93</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>
168	<div·class="line"><a·id="l00094"·name="l00094"></a><span·class="lineno">···94</span>····{</div>	168	<div·class="line"><a·id="l00094"·name="l00094"></a><span·class="lineno">···94</span>····{</div>
169	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno">···95</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>	169	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno">···95</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>
170	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno">···96</span>····}</div>	170	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno">···96</span>····}</div>
171	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno">···97</span>·</div>	171	<div·class="line"><a·id="l00097"·name="l00097"></a><span·class="lineno">···97</span>·</div>
Offset 216, 28 lines modified		Offset 216, 28 lines modified
216	<div·class="line"><a·id="l00148"·name="l00148"></a><span·class="lineno">··148</span>·</div>	216	<div·class="line"><a·id="l00148"·name="l00148"></a><span·class="lineno">··148</span>·</div>
217	<div·class="line"><a·id="l00149"·name="l00149"></a><span·class="lineno">··149</span><span·class="comment">//·------------------------------------------------------------------</span></div>	217	<div·class="line"><a·id="l00149"·name="l00149"></a><span·class="lineno">··149</span><span·class="comment">//·------------------------------------------------------------------</span></div>
218	<div·class="line"><a·id="l00150"·name="l00150"></a><span·class="lineno">··150</span><span·class="comment">//·literals</span></div>	218	<div·class="line"><a·id="l00150"·name="l00150"></a><span·class="lineno">··150</span><span·class="comment">//·literals</span></div>


Offset 140, 31 lines modified		Offset 140, 31 lines modified
140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>	140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="foldopen"·id="foldopen00042"·data-start="{"·data-end="};">	143	<div·class="foldopen"·id="foldopen00042"·data-start="{"·data-end="};">
144	<div·class="line"><a·id="l00042"·name="l00042"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html">···42</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa27,·27></div>	144	<div·class="line"><a·id="l00042"·name="l00042"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html">···42</a></span><span·class="keyword">class·</span><a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·:·<span·class="keyword">public</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">aminoacid_base</a><aa27,·27></div>
145	<div·class="line"><a·id="l00043"·name="l00043"></a><span·class="lineno">···43</span>{</div>	145	<div·class="line"><a·id="l00043"·name="l00043"></a><span·class="lineno">···43</span>{</div>
146	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno">···44</span><span·class="keyword">private</span>:</div>	146	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno">···44</span><span·class="keyword">private</span>:</div>
147	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno">···46</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1~~aminoacid~~__~~bas~~e.html">aminoacid_base<aa27,·27></a>;</div>	147	<div·class="line"><a·id="l00046"·name="l00046"></a><span·class="lineno">···46</span>····<span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">aminoacid_base<aa27,·27></a>;</div>
148	<div·class="line"><a·id="l00047"·name="l00047"></a><span·class="lineno">···47</span>·</div>	148	<div·class="line"><a·id="l00047"·name="l00047"></a><span·class="lineno">···47</span>·</div>
149	<div·class="line"><a·id="l00049"·name="l00049"></a><span·class="lineno">···49</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	149	<div·class="line"><a·id="l00049"·name="l00049"></a><span·class="lineno">···49</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
150	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno">···52</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>	150	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno">···52</span>····<span·class="keyword">friend</span>·<a·class="code·hl_class"·href="classseqan3_1_1alphabet__base.html">base_t::base_t</a>;</div>
151	<div·class="line"><a·id="l00054"·name="l00054"></a><span·class="lineno">···54</span>·</div>	151	<div·class="line"><a·id="l00054"·name="l00054"></a><span·class="lineno">···54</span>·</div>
152	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span><span·class="keyword">public</span>:</div>	152	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span><span·class="keyword">public</span>:</div>
153	<div·class="line"><a·id="l00059"·name="l00059"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99">···59</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99">aa27</a>()·noexcept·=·default;·························</div>	153	<div·class="line"><a·id="l00059"·name="l00059"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99">···59</a></span>····<span·class="keyword">constexpr</span>·<a·class="code·hl_function"·href="classseqan3_1_1aa27.html#ac4dda1d4b0f156fae8c7309e9839ca99">aa27</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·························</div>
154	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#a38d4994d812887be4d8945d7f635a490">···60</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·const·&)·noexcept·=·default;·············</div>
155	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ab4206dd364ee62d975efd96015e1b5ae">···61</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&&)·noexcept·=·default;··················</div>
156	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ae13a178aba25aefa8d63331f119f9c95">···62</a></span>····constexpr·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&·operator=(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·const·&)·noexcept·=·default;·</div>
157	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#a~~abc~~4b9~~36e03d154d1350e8~~d~~d4ef879b7~~">···63</a></span>····~~constexpr~~·<a·class="code·hl_class"·href="classseqan3_1_1~~aa27.html">~~a~~a27</a>·&a~~m~~p;·~~ope~~rator=(~~<a·class="code·hl_cl[·...·truncated·by·diffoscope;·len:·77,·SHA:·~~a018~~5783cd1~~5ef87~~0~~f6a0411957a7d~~2~~7f45708b31c0f~~4fa70216f0~~799a~~954~~5fe~~·...·]······</div>	154	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#a38d4994d812887be4d8945d7f635a490">···60</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·h[·...·truncated·by·diffoscope;·len:·373,·SHA:·98f4d5ef3ae1acb9902d3b3882aec86842c39e89e0927884a5a709006b119627·...·]······</div>
		155	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ab4206dd364ee62d975efd96015e1b5ae">···61</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;··················</div>
		156	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ae13a178aba25aefa8d63331f119f9c95">···62</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">const</a>·&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;·</div>
		157	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#aabc4b936e03d154d1350e8dd4ef879b7">···63</a></span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">operator</a>=(<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>·&&)·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;······</div>
158	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ae9510841a269a13a2c8c055ed11c14ef">···64</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>()·noexcept·=·default;··································</div>	158	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno"><a·class="line"·href="classseqan3_1_1aa27.html#ae9510841a269a13a2c8c055ed11c14ef">···64</a></span>····~<a·class="code·hl_class"·href="classseqan3_1_1aa27.html">aa27</a>()·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">noexcept</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">default</a>;··································</div>
159	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>·</div>	159	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>·</div>
160	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>····using·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>	160	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">using</a>·<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>::<a·class="code·hl_class"·href="classseqan3_1_1aminoacid__base.html">base_t</a>;</div>
161	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>·</div>	161	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>·</div>
162	<div·class="line"><a·id="l00069"·name="l00069"></a><span·class="lineno">···69</span>private:</div>	162	<div·class="line"><a·id="l00069"·name="l00069"></a><span·class="lineno">···69</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">private</a>:</div>
163	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>····static·constexpr·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'D'</span>,·<span·class="charliteral">'E'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,</div>	163	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>····<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>·rank_to_char_table[<a·class="code·hl_variable"·href="classseqan3_1_1alphabet__base.html#ab0e6be089b64f9cbfdeb731b7a815f6d">alphabet_size</a>]{<span·class="charliteral">'A'</span>,·<span·class="charliteral">'B'</span>,·<span·class="charliteral">'C'</span>,·<span·class="charliteral">'D'</span>,·<span·class="charliteral">'E'</span>,·<span·class="charliteral">'F'</span>,·<span·class="charliteral">'G'</span>,·<span·class="charliteral">'H'</span>,·<span·class="charliteral">'I'</span>,</div>
164	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·································································<span·class="charliteral">'J'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'L'</span>,·<span·class="charliteral">'M'</span>,·<span·class="charliteral">'N'</span>,·<span·class="charliteral">'O'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'Q'</span>,·<span·class="charliteral">'R'</span>,</div>	164	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>·································································<span·class="charliteral">'J'</span>,·<span·class="charliteral">'K'</span>,·<span·class="charliteral">'L'</span>,·<span·class="charliteral">'M'</span>,·<span·class="charliteral">'N'</span>,·<span·class="charliteral">'O'</span>,·<span·class="charliteral">'P'</span>,·<span·class="charliteral">'Q'</span>,·<span·class="charliteral">'R'</span>,</div>
165	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>·································································<span·class="charliteral">'S'</span>,·<span·class="charliteral">'T'</span>,·<span·class="charliteral">'U'</span>,·<span·class="charliteral">'V'</span>,·<span·class="charliteral">'W'</span>,·<span·class="charliteral">'X'</span>,·<span·class="charliteral">'Y'</span>,·<span·class="charliteral">'Z'</span>,·<span·class="charliteral">'*'</span>};</div>	165	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>·································································<span·class="charliteral">'S'</span>,·<span·class="charliteral">'T'</span>,·<span·class="charliteral">'U'</span>,·<span·class="charliteral">'V'</span>,·<span·class="charliteral">'W'</span>,·<span·class="charliteral">'X'</span>,·<span·class="charliteral">'Y'</span>,·<span·class="charliteral">'Z'</span>,·<span·class="charliteral">'*'</span>};</div>
166	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span>·</div>	166	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span>·</div>
167	<div·class="line"><a·id="l00076"·name="l00076"></a><span·class="lineno">···76</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>	167	<div·class="line"><a·id="l00076"·name="l00076"></a><span·class="lineno">···76</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#ae7bb6e9a5cdabcc1799c290ebb179c75">char_type</a>·rank_to_char(<a·class="code·hl_typedef"·href="classseqan3_1_1alphabet__base.html#aa2cde16f10555111c36b428bda41bc68">rank_type</a>·<span·class="keyword">const</span>·rank)</div>
168	<div·class="line"><a·id="l00077"·name="l00077"></a><span·class="lineno">···77</span>····{</div>	168	<div·class="line"><a·id="l00077"·name="l00077"></a><span·class="lineno">···77</span>····{</div>
169	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno">···78</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>	169	<div·class="line"><a·id="l00078"·name="l00078"></a><span·class="lineno">···78</span>········<span·class="keywordflow">return</span>·rank_to_char_table[rank];</div>
170	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span>····}</div>	170	<div·class="line"><a·id="l00079"·name="l00079"></a><span·class="lineno">···79</span>····}</div>
Offset 203, 28 lines modified		Offset 203, 28 lines modified
203	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span>·</div>	203	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span>·</div>
204	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span><span·class="comment">//·------------------------------------------------------------------</span></div>	204	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span><span·class="comment">//·------------------------------------------------------------------</span></div>
205	<div·class="line"><a·id="l00120"·name="l00120"></a><span·class="lineno">··120</span><span·class="comment">//·literals</span></div>	205	<div·class="line"><a·id="l00120"·name="l00120"></a><span·class="lineno">··120</span><span·class="comment">//·literals</span></div>


Offset 166, 15 lines modified		Offset 166, 15 lines modified
166	<div·class="line"><a·id="l00051"·name="l00051"></a><span·class="lineno">···51</span>{</div>	166	<div·class="line"><a·id="l00051"·name="l00051"></a><span·class="lineno">···51</span>{</div>
167	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>····<span·class="keyword">using·</span>base_t·=·detail::customisation_point_object<enable_aminoacid_cpo<alphabet_t>,·2>;</div>	167	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>····<span·class="keyword">using·</span>base_t·=·detail::customisation_point_object<enable_aminoacid_cpo<alphabet_t>,·2>;</div>
168	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span>····<span·class="keyword">using·</span>base_t::base_t;</div>	168	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span>····<span·class="keyword">using·</span>base_t::base_t;</div>
169	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>·</div>	169	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>·</div>
170	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno">···60</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type></div>	170	<div·class="line"><a·id="l00060"·name="l00060"></a><span·class="lineno">···60</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type></div>
171	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>····<span·class="keyword">using·</span>alphabet_or_type_identity·=</div>	171	<div·class="line"><a·id="l00061"·name="l00061"></a><span·class="lineno">···61</span>····<span·class="keyword">using·</span>alphabet_or_type_identity·=</div>
172	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span>········<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t<std::is_nothrow_default_constructible_v<std::remove_cvref_t<alphabet_type></a>></div>	172	<div·class="line"><a·id="l00062"·name="l00062"></a><span·class="lineno">···62</span>········<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t<std::is_nothrow_default_constructible_v<std::remove_cvref_t<alphabet_type></a>></div>
173	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span>·······························&&·seqan3::is_constexpr_default_constructible_v<std::remove_cvref_t<alphabet_type>>,</div>	173	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span>·······························&&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::is_constexpr_default_constructible_v<std::remove_cvref_t<alphabet_type></a>>,</div>
174	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno">···64</span>···························std::remove_cvref_t<alphabet_type>,</div>	174	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno">···64</span>···························std::remove_cvref_t<alphabet_type>,</div>
175	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>···························std::type_identity<alphabet_type>>;</div>	175	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>···························std::type_identity<alphabet_type>>;</div>
176	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>·</div>	176	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>·</div>
177	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type·=·alphabet_t></div>	177	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type·=·alphabet_t></div>
178	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_define"·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a>(priority_tag<2>)(</div>	178	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_define"·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a>(priority_tag<2>)(</div>
179	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>········<span·class="comment">/return/</span>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::bool_constant<seqan3::custom::alphabet<alphabet_type>::enable_aminoacid</a>>::value·==·<span·class="keyword">true</span>·<span·class="comment">/;/</span></div>	179	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>········<span·class="comment">/return/</span>·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::bool_constant<seqan3::custom::alphabet<alphabet_type>::enable_aminoacid</a>>::value·==·<span·class="keyword">true</span>·<span·class="comment">/;/</span></div>
180	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>····);</div>	180	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>····);</div>
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204	<div·class="line"><a·id="l00154"·name="l00154"></a><span·class="lineno">··154</span><span·class="comment">//·============================================================================</span></div>	204	<div·class="line"><a·id="l00154"·name="l00154"></a><span·class="lineno">··154</span><span·class="comment">//·============================================================================</span></div>
205	<div·class="line"><a·id="l00155"·name="l00155"></a><span·class="lineno">··155</span>·</div>	205	<div·class="line"><a·id="l00155"·name="l00155"></a><span·class="lineno">··155</span>·</div>
206	<div·class="line"><a·id="l00172"·name="l00172"></a><span·class="lineno">··172</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·type></div>	206	<div·class="line"><a·id="l00172"·name="l00172"></a><span·class="lineno">··172</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·type></div>
207	<div·class="line"><a·id="l00173"·name="l00173"></a><span·class="lineno">··173</span><span·class="keyword">concept·</span><a·class="code·hl_interface"·href="interfaceseqan3_1_1aminoacid__alphabet.html">aminoacid_alphabet</a>·=·<a·class="code·hl_interface"·href="interfaceseqan3_1_1alphabet.html">alphabet<type></a>·&&·enable_aminoacid<type>;</div>	207	<div·class="line"><a·id="l00173"·name="l00173"></a><span·class="lineno">··173</span><span·class="keyword">concept·</span><a·class="code·hl_interface"·href="interfaceseqan3_1_1aminoacid__alphabet.html">aminoacid_alphabet</a>·=·<a·class="code·hl_interface"·href="interfaceseqan3_1_1alphabet.html">alphabet<type></a>·&&·enable_aminoacid<type>;</div>
208	<div·class="line"><a·id="l00175"·name="l00175"></a><span·class="lineno">··175</span>·</div>	208	<div·class="line"><a·id="l00175"·name="l00175"></a><span·class="lineno">··175</span>·</div>
209	<div·class="line"><a·id="l00176"·name="l00176"></a><span·class="lineno">··176</span>}·<span·class="comment">//·namespace·seqan3</span></div>	209	<div·class="line"><a·id="l00176"·name="l00176"></a><span·class="lineno">··176</span>}·<span·class="comment">//·namespace·seqan3</span></div>
210	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>	210	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>
		211	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
211	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>	212	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
212	<div·class="ttc"·id="acustomisation__point_8hpp_html_af0212fecfa9f94ab541c42670b177627"><div·class="ttname"><a·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a></div><div·class="ttdeci">#define·SEQAN3_CPO_OVERLOAD(...)</div><div·class="ttdoc">A·macro·that·helps·to·define·a·seqan3::detail::customisation_point_object.</div><div·class="ttdef"><b>Definition</b>·customisation_point.hpp:104</div></div>	213	<div·class="ttc"·id="acustomisation__point_8hpp_html_af0212fecfa9f94ab541c42670b177627"><div·class="ttname"><a·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a></div><div·class="ttdeci">#define·SEQAN3_CPO_OVERLOAD(...)</div><div·class="ttdoc">A·macro·that·helps·to·define·a·seqan3::detail::customisation_point_object.</div><div·class="ttdef"><b>Definition</b>·customisation_point.hpp:104</div></div>
213	<div·class="ttc"·id="agroup__alphabet__aminoacid_html_ga1f2e84256043e6d3ffbd3ec1f6a2eff3"><div·class="ttname"><a·href="group__alphabet__aminoacid.html#ga1f2e84256043e6d3ffbd3ec1f6a2eff3">seqan3::enable_aminoacid</a></div><div·class="ttdeci">constexpr·bool·enable_aminoacid</div><div·class="ttdoc">A·trait·that·indicates·whether·a·type·shall·model·seqan3::aminoacid_alphabet.</div><div·class="ttdef"><b>Definition</b>·alphabet/aminoacid/concept.hpp:143</div></div>	214	<div·class="ttc"·id="agroup__alphabet__aminoacid_html_ga1f2e84256043e6d3ffbd3ec1f6a2eff3"><div·class="ttname"><a·href="group__alphabet__aminoacid.html#ga1f2e84256043e6d3ffbd3ec1f6a2eff3">seqan3::enable_aminoacid</a></div><div·class="ttdeci">constexpr·bool·enable_aminoacid</div><div·class="ttdoc">A·trait·that·indicates·whether·a·type·shall·model·seqan3::aminoacid_alphabet.</div><div·class="ttdef"><b>Definition</b>·alphabet/aminoacid/concept.hpp:143</div></div>
214	<div·class="ttc"·id="aintegral_constant_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::bool_constant</a></div></div>	215	<div·class="ttc"·id="aintegral_constant_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::bool_constant</a></div></div>
215	<div·class="ttc"·id="ainterfaceseqan3_1_1alphabet_html"><div·class="ttname"><a·href="interfaceseqan3_1_1alphabet.html">alphabet</a></div><div·class="ttdoc">The·generic·alphabet·concept·that·covers·most·data·types·used·in·ranges.</div></div>	216	<div·class="ttc"·id="ainterfaceseqan3_1_1alphabet_html"><div·class="ttname"><a·href="interfaceseqan3_1_1alphabet.html">alphabet</a></div><div·class="ttdoc">The·generic·alphabet·concept·that·covers·most·data·types·used·in·ranges.</div></div>
216	<div·class="ttc"·id="ainterfaceseqan3_1_1aminoacid__alphabet_html"><div·class="ttname"><a·href="interfaceseqan3_1_1aminoacid__alphabet.html">aminoacid_alphabet</a></div><div·class="ttdoc">A·concept·that·indicates·whether·an·alphabet·represents·amino·acids.</div></div>	217	<div·class="ttc"·id="ainterfaceseqan3_1_1aminoacid__alphabet_html"><div·class="ttname"><a·href="interfaceseqan3_1_1aminoacid__alphabet.html">aminoacid_alphabet</a></div><div·class="ttdoc">A·concept·that·indicates·whether·an·alphabet·represents·amino·acids.</div></div>
217	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	218	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>


Offset 141, 38 lines modified		Offset 141, 39 lines modified
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>	143	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>·</div>
144	<div·class="foldopen"·id="foldopen00026"·data-start="{"·data-end="};">	144	<div·class="foldopen"·id="foldopen00026"·data-start="{"·data-end="};">
145	<div·class="line"><a·id="l00026"·name="l00026"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html">···26</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>·:·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></div>	145	<div·class="line"><a·id="l00026"·name="l00026"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html">···26</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>·:·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></div>
146	<div·class="line"><a·id="l00027"·name="l00027"></a><span·class="lineno">···27</span>{</div>	146	<div·class="line"><a·id="l00027"·name="l00027"></a><span·class="lineno">···27</span>{</div>
147	<div·class="foldopen"·id="foldopen00032"·data-start="{"·data-end="}">	147	<div·class="foldopen"·id="foldopen00032"·data-start="{"·data-end="}">
148	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a746aa6b3eb91cf599981621b7cc2fe47">···32</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a746aa6b3eb91cf599981621b7cc2fe47">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·type_name,·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·wrong_char)·:</div>	148	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a746aa6b3eb91cf599981621b7cc2fe47">···32</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a746aa6b3eb91cf599981621b7cc2fe47">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a>,·<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·<a[·...·truncated·by·diffoscope;·len:·84,·SHA:·84f106a6bd38f506b91dd4997b49ee9c4c6992a693a66c33bc28f78d6e928664·...·])·:</div>
149	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>········<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>{<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::string{<span·class="stringliteral">"Assigning·"</span>}·+·wrong_char·+·<span·class="stringliteral">"·to·an·alphabet·of·type·"</span>·+·type_name</div>	149	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>········<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>{<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::string{<span·class="stringliteral">"Assigning·"</span>}·+·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">wrong_char</a>·+·<span·class="stringliteral">"·to·an·alphabet·of·type·"</span>·+·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a></div>
150	<div·class="line"><a·id="l00034"·name="l00034"></a><span·class="lineno">···34</span>···························+·<span·class="stringliteral">"·would·incur·information·loss.·If·you·want·implicit·conversion,·use·"</span></div>	150	<div·class="line"><a·id="l00034"·name="l00034"></a><span·class="lineno">···34</span>···························+·<span·class="stringliteral">"·would·incur·information·loss.·If·you·want·implicit·conversion,·use·"</span></div>
151	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno">···35</span>·····························<span·class="stringliteral">"seqan3::assign_char·instead·of·seqan3::assign_char_strict."</span>}</div>	151	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno">···35</span>·····························<span·class="stringliteral">"seqan3::assign_char·instead·of·seqan3::assign_char_strict."</span>}</div>
152	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>····{}</div>	152	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>····{}</div>
153	</div>	153	</div>
154	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span>·</div>	154	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span>·</div>
155	<div·class="foldopen"·id="foldopen00042"·data-start="{"·data-end="}">	155	<div·class="foldopen"·id="foldopen00042"·data-start="{"·data-end="}">
156	<div·class="line"><a·id="l00042"·name="l00042"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a3a7f0c699aa7842352f96842b0d39e9a">···42</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a3a7f0c699aa7842352f96842b0d39e9a">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·type_name,·<span·class="keywordtype">char</span>·<span·class="keyword">const</span>·wrong_char)·:</div>	156	<div·class="line"><a·id="l00042"·name="l00042"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a3a7f0c699aa7842352f96842b0d39e9a">···42</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a3a7f0c699aa7842352f96842b0d39e9a">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a>,·<span·class="keywordtype">char</span>·<span·class="keyword">const</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">wrong_char</a>)·:</div>
157	<div·class="line"><a·id="l00043"·name="l00043"></a><span·class="lineno">···43</span>········<a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>{type_name,·detail::make_printable(wrong_char)}</div>	157	<div·class="line"><a·id="l00043"·name="l00043"></a><span·class="lineno">···43</span>········<a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>{<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a>,·detail::make_printable(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">wrong_char</a>)}</div>
158	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno">···44</span>····{}</div>	158	<div·class="line"><a·id="l00044"·name="l00044"></a><span·class="lineno">···44</span>····{}</div>
159	</div>	159	</div>
160	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno">···45</span>·</div>	160	<div·class="line"><a·id="l00045"·name="l00045"></a><span·class="lineno">···45</span>·</div>
161	<div·class="line"><a·id="l00050"·name="l00050"></a><span·class="lineno">···50</span>····<span·class="keyword">template</span>·<std::convertible_to<<span·class="keywordtype">char</span>>·<span·class="keywordtype">char</span>_t></div>	161	<div·class="line"><a·id="l00050"·name="l00050"></a><span·class="lineno">···50</span>····<span·class="keyword">template</span>·<std::convertible_to<<span·class="keywordtype">char</span>>·<span·class="keywordtype">char</span>_t></div>
162	<div·class="foldopen"·id="foldopen00051"·data-start="{"·data-end="}">	162	<div·class="foldopen"·id="foldopen00051"·data-start="{"·data-end="}">
163	<div·class="line"><a·id="l00051"·name="l00051"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a4a3a795bc566837fb73830daa164c80f">···51</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a4a3a795bc566837fb73830daa164c80f">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·type_name,·char_t·<span·class="keyword">const</span>·wrong_char)·:</div>	163	<div·class="line"><a·id="l00051"·name="l00051"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1invalid__char__assignment.html#a4a3a795bc566837fb73830daa164c80f">···51</a></span>····<a·class="code·hl_function"·href="structseqan3_1_1invalid__char__assignment.html#a4a3a795bc566837fb73830daa164c80f">invalid_char_assignment</a>(<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<span·class="keyword">const</span>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a>,·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">char_t</a>·<span·class="keyword">const</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug[·...·truncated·by·diffoscope;·len:·35,·SHA:·9040162a521d0783a8e636ce6d5f936a46e626131c17cb8b7ad4d153d4eb33fb·...·])·:</div>
164	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno">···52</span>········<a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>{type_name,·static_cast<char&gt~~;(w~~rong_char)}</div>	164	<div·class="line"><a·id="l00052"·name="l00052"></a><span·class="lineno">···52</span>········<a·class="code·hl_struct"·href="structseqan3_1_1invalid__char__assignment.html">invalid_char_assignment</a>{<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">type_name</a>,·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">static_cast</a><<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">char</[·...·truncated·by·diffoscope;·len:·93,·SHA:·73411ae3bbf053e29f4f378a6c643d48200417ef31731fec610310cc09aef84c·...·])}</div>
165	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>····{}</div>	165	<div·class="line"><a·id="l00053"·name="l00053"></a><span·class="lineno">···53</span>····{}</div>
166	</div>	166	</div>
167	<div·class="line"><a·id="l00054"·name="l00054"></a><span·class="lineno">···54</span>};</div>	167	<div·class="line"><a·id="l00054"·name="l00054"></a><span·class="lineno">···54</span>};</div>
168	</div>	168	</div>
169	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span>·</div>	169	<div·class="line"><a·id="l00055"·name="l00055"></a><span·class="lineno">···55</span>·</div>
170	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>}·<span·class="comment">//·namespace·seqan3</span></div>	170	<div·class="line"><a·id="l00056"·name="l00056"></a><span·class="lineno">···56</span>}·<span·class="comment">//·namespace·seqan3</span></div>
171	<div·class="ttc"·id="abasic_string_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>	171	<div·class="ttc"·id="abasic_string_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
		172	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
172	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	173	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
173	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>	174	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>
174	<div·class="ttc"·id="apretty__print_8hpp_html"><div·class="ttname"><a·href="pretty__print_8hpp.html">pretty_print.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::make_printable·which·converts·non·printable·characters·(e....</div></div>	175	<div·class="ttc"·id="apretty__print_8hpp_html"><div·class="ttname"><a·href="pretty__print_8hpp.html">pretty_print.hpp</a></div><div·class="ttdoc">Provides·seqan3::detail::make_printable·which·converts·non·printable·characters·(e....</div></div>
175	<div·class="ttc"·id="aruntime_error_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></div></div>	176	<div·class="ttc"·id="aruntime_error_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></div></div>
176	<div·class="ttc"·id="astdexcept_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/stdexcept.html">stdexcept</a></div></div>	177	<div·class="ttc"·id="astdexcept_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/stdexcept.html">stdexcept</a></div></div>
177	<div·class="ttc"·id="astring_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/string.html">string</a></div></div>	178	<div·class="ttc"·id="astring_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/string.html">string</a></div></div>
178	<div·class="ttc"·id="astructseqan3_1_1invalid__char__assignment_html"><div·class="ttname"><a·href="structseqan3_1_1invalid__char__assignment.html">seqan3::invalid_char_assignment</a></div><div·class="ttdoc">An·exception·typically·thrown·by·seqan3::alphabet::assign_char_strict.</div><div·class="ttdef"><b>Definition</b>·alphabet/exception.hpp:27</div></div>	179	<div·class="ttc"·id="astructseqan3_1_1invalid__char__assignment_html"><div·class="ttname"><a·href="structseqan3_1_1invalid__char__assignment.html">seqan3::invalid_char_assignment</a></div><div·class="ttdoc">An·exception·typically·thrown·by·seqan3::alphabet::assign_char_strict.</div><div·class="ttdef"><b>Definition</b>·alphabet/exception.hpp:27</div></div>


Offset 271, 15 lines modified		Offset 271, 15 lines modified
271	<div·class="line"><a·id="l00300"·name="l00300"></a><span·class="lineno">··300</span>{</div>	271	<div·class="line"><a·id="l00300"·name="l00300"></a><span·class="lineno">··300</span>{</div>
272	<div·class="line"><a·id="l00302"·name="l00302"></a><span·class="lineno">··302</span>····<span·class="keyword">using·</span>base_t·=·detail::customisation_point_object<max_pseudoknot_depth_cpo<alphabet_t>,·2>;</div>	272	<div·class="line"><a·id="l00302"·name="l00302"></a><span·class="lineno">··302</span>····<span·class="keyword">using·</span>base_t·=·detail::customisation_point_object<max_pseudoknot_depth_cpo<alphabet_t>,·2>;</div>
273	<div·class="line"><a·id="l00304"·name="l00304"></a><span·class="lineno">··304</span>····<span·class="keyword">using·</span>base_t::base_t;</div>	273	<div·class="line"><a·id="l00304"·name="l00304"></a><span·class="lineno">··304</span>····<span·class="keyword">using·</span>base_t::base_t;</div>
274	<div·class="line"><a·id="l00305"·name="l00305"></a><span·class="lineno">··305</span>·</div>	274	<div·class="line"><a·id="l00305"·name="l00305"></a><span·class="lineno">··305</span>·</div>
275	<div·class="line"><a·id="l00309"·name="l00309"></a><span·class="lineno">··309</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type></div>	275	<div·class="line"><a·id="l00309"·name="l00309"></a><span·class="lineno">··309</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type></div>
276	<div·class="line"><a·id="l00310"·name="l00310"></a><span·class="lineno">··310</span>····<span·class="keyword">using·</span>alphabet_or_type_identity·=</div>	276	<div·class="line"><a·id="l00310"·name="l00310"></a><span·class="lineno">··310</span>····<span·class="keyword">using·</span>alphabet_or_type_identity·=</div>
277	<div·class="line"><a·id="l00311"·name="l00311"></a><span·class="lineno">··311</span>········<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t<std::is_nothrow_default_constructible_v<std::remove_cvref_t<alphabet_type></a>></div>	277	<div·class="line"><a·id="l00311"·name="l00311"></a><span·class="lineno">··311</span>········<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t<std::is_nothrow_default_constructible_v<std::remove_cvref_t<alphabet_type></a>></div>
278	<div·class="line"><a·id="l00312"·name="l00312"></a><span·class="lineno">··312</span>·······························&&·seqan3::is_constexpr_default_constructible_v<std::remove_cvref_t<alphabet_type>>,</div>	278	<div·class="line"><a·id="l00312"·name="l00312"></a><span·class="lineno">··312</span>·······························&&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::is_constexpr_default_constructible_v<std::remove_cvref_t<alphabet_type></a>>,</div>
279	<div·class="line"><a·id="l00313"·name="l00313"></a><span·class="lineno">··313</span>···························std::remove_cvref_t<alphabet_type>,</div>	279	<div·class="line"><a·id="l00313"·name="l00313"></a><span·class="lineno">··313</span>···························std::remove_cvref_t<alphabet_type>,</div>
280	<div·class="line"><a·id="l00314"·name="l00314"></a><span·class="lineno">··314</span>···························std::type_identity<alphabet_type>>;</div>	280	<div·class="line"><a·id="l00314"·name="l00314"></a><span·class="lineno">··314</span>···························std::type_identity<alphabet_type>>;</div>
281	<div·class="line"><a·id="l00315"·name="l00315"></a><span·class="lineno">··315</span>·</div>	281	<div·class="line"><a·id="l00315"·name="l00315"></a><span·class="lineno">··315</span>·</div>
282	<div·class="line"><a·id="l00319"·name="l00319"></a><span·class="lineno">··319</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type·=·alphabet_t></div>	282	<div·class="line"><a·id="l00319"·name="l00319"></a><span·class="lineno">··319</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alphabet_type·=·alphabet_t></div>
283	<div·class="line"><a·id="l00320"·name="l00320"></a><span·class="lineno">··320</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_define"·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a>(priority_tag<2>)(</div>	283	<div·class="line"><a·id="l00320"·name="l00320"></a><span·class="lineno">··320</span>····<span·class="keyword">static</span>·<span·class="keyword">constexpr</span>·<span·class="keyword">auto</span>·<a·class="code·hl_define"·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a>(priority_tag<2>)(</div>
284	<div·class="line"><a·id="l00321"·name="l00321"></a><span·class="lineno">··321</span>········<span·class="comment">/return/</span>·<a·class="code·hl_struct"·href="structseqan3_1_1custom_1_1alphabet.html">seqan3::custom::alphabet<alphabet_type>::max_pseudoknot_depth</a>·<span·class="comment">/;/</span></div>	284	<div·class="line"><a·id="l00321"·name="l00321"></a><span·class="lineno">··321</span>········<span·class="comment">/return/</span>·<a·class="code·hl_struct"·href="structseqan3_1_1custom_1_1alphabet.html">seqan3::custom::alphabet<alphabet_type>::max_pseudoknot_depth</a>·<span·class="comment">/;/</span></div>
285	<div·class="line"><a·id="l00322"·name="l00322"></a><span·class="lineno">··322</span>····);</div>	285	<div·class="line"><a·id="l00322"·name="l00322"></a><span·class="lineno">··322</span>····);</div>
Offset 349, 26 lines modified		Offset 349, 27 lines modified
349	<div·class="line"><a·id="l00488"·name="l00488"></a><span·class="lineno">··488</span><span·class="comment">//·============================================================================</span></div>	349	<div·class="line"><a·id="l00488"·name="l00488"></a><span·class="lineno">··488</span><span·class="comment">//·============================================================================</span></div>
350	<div·class="line"><a·id="l00489"·name="l00489"></a><span·class="lineno">··489</span><span·class="comment">//·rna_structure_alphabet·concept</span></div>	350	<div·class="line"><a·id="l00489"·name="l00489"></a><span·class="lineno">··489</span><span·class="comment">//·rna_structure_alphabet·concept</span></div>
351	<div·class="line"><a·id="l00490"·name="l00490"></a><span·class="lineno">··490</span><span·class="comment">//·============================================================================</span></div>	351	<div·class="line"><a·id="l00490"·name="l00490"></a><span·class="lineno">··490</span><span·class="comment">//·============================================================================</span></div>
352	<div·class="line"><a·id="l00491"·name="l00491"></a><span·class="lineno">··491</span>·</div>	352	<div·class="line"><a·id="l00491"·name="l00491"></a><span·class="lineno">··491</span>·</div>
353	<div·class="line"><a·id="l00492"·name="l00492"></a><span·class="lineno">··492</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	353	<div·class="line"><a·id="l00492"·name="l00492"></a><span·class="lineno">··492</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
354	<div·class="line"><a·id="l00493"·name="l00493"></a><span·class="lineno">··493</span>{</div>	354	<div·class="line"><a·id="l00493"·name="l00493"></a><span·class="lineno">··493</span>{</div>
355	<div·class="line"><a·id="l00527"·name="l00527"></a><span·class="lineno">··527</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t></div>	355	<div·class="line"><a·id="l00527"·name="l00527"></a><span·class="lineno">··527</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t></div>
356	<div·class="line"><a·id="l00528"·name="l00528"></a><span·class="lineno">··528</span><span·class="keyword">concept·</span><a·class="code·hl_interface"·href="interfaceseqan3_1_1rna__structure__alphabet.html">rna_structure_alphabet</a>·=·<a·class="code·hl_~~inte~~rface"·href="~~inte~~rfaceseqan3_1_1~~alph~~abet.html">seqan3::alphabet<t></a>·&&·<span·class="keyword">requires</span>·(t·val)·{</div>	356	<div·class="line"><a·id="l00528"·name="l00528"></a><span·class="lineno">··528</span><span·class="keyword">concept·</span><a·class="code·hl_interface"·href="interfaceseqan3_1_1rna__structure__alphabet.html">rna_structure_alphabet</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::alphabet<t></a>·&&·<span·class="keyword">requires</span>·(t·val)·{</div>
357	<div·class="line"><a·id="l00529"·name="l00529"></a><span·class="lineno">··529</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gaf5d7067bc372db970e22e38dbfab275b">seqan3::is_pair_open</a>(val)·};</div>	357	<div·class="line"><a·id="l00529"·name="l00529"></a><span·class="lineno">··529</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gaf5d7067bc372db970e22e38dbfab275b">seqan3::is_pair_open</a>(val)·};</div>
358	<div·class="line"><a·id="l00530"·name="l00530"></a><span·class="lineno">··530</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gace976659271f80b74a843545f599fccc">seqan3::is_pair_close</a>(val)·};</div>	358	<div·class="line"><a·id="l00530"·name="l00530"></a><span·class="lineno">··530</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gace976659271f80b74a843545f599fccc">seqan3::is_pair_close</a>(val)·};</div>
359	<div·class="line"><a·id="l00531"·name="l00531"></a><span·class="lineno">··531</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#ga978f10773c25e7ef73c9c5f72277c555">seqan3::is_unpaired</a>(val)·};</div>	359	<div·class="line"><a·id="l00531"·name="l00531"></a><span·class="lineno">··531</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#ga978f10773c25e7ef73c9c5f72277c555">seqan3::is_unpaired</a>(val)·};</div>
360	<div·class="line"><a·id="l00532"·name="l00532"></a><span·class="lineno">··532</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gaa630c75bc160fdc858846a0d714880bd">seqan3::pseudoknot_id</a>(val)·};</div>	360	<div·class="line"><a·id="l00532"·name="l00532"></a><span·class="lineno">··532</span>····{·<a·class="code·hl_variable"·href="group__alphabet__structure.html#gaa630c75bc160fdc858846a0d714880bd">seqan3::pseudoknot_id</a>(val)·};</div>
361	<div·class="line"><a·id="l00533"·name="l00533"></a><span·class="lineno">··533</span>·</div>	361	<div·class="line"><a·id="l00533"·name="l00533"></a><span·class="lineno">··533</span>·</div>
362	<div·class="line"><a·id="l00534"·name="l00534"></a><span·class="lineno">··534</span>····<span·class="comment">//·this·is·delegated·to·a·static·class·variable,·which·must·not·be·0</span></div>	362	<div·class="line"><a·id="l00534"·name="l00534"></a><span·class="lineno">··534</span>····<span·class="comment">//·this·is·delegated·to·a·static·class·variable,·which·must·not·be·0</span></div>
363	<div·class="line"><a·id="l00535"·name="l00535"></a><span·class="lineno">··535</span>····<span·class="keyword">requires</span>·seqan3::max_pseudoknot_depth<t>·>·0;</div>	363	<div·class="line"><a·id="l00535"·name="l00535"></a><span·class="lineno">··535</span>····<span·class="keyword">requires</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">seqan3::max_pseudoknot_depth<t></a>·>·0;</div>
364	<div·class="line"><a·id="l00536"·name="l00536"></a><span·class="lineno">··536</span>};</div>	364	<div·class="line"><a·id="l00536"·name="l00536"></a><span·class="lineno">··536</span>};</div>
365	<div·class="line"><a·id="l00538"·name="l00538"></a><span·class="lineno">··538</span>·</div>	365	<div·class="line"><a·id="l00538"·name="l00538"></a><span·class="lineno">··538</span>·</div>
366	<div·class="line"><a·id="l00539"·name="l00539"></a><span·class="lineno">··539</span>}·<span·class="comment">//·namespace·seqan3</span></div>	366	<div·class="line"><a·id="l00539"·name="l00539"></a><span·class="lineno">··539</span>}·<span·class="comment">//·namespace·seqan3</span></div>
367	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>	367	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>
		368	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
368	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>	369	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
369	<div·class="ttc"·id="acustomisation__point_8hpp_html"><div·class="ttname"><a·href="customisation__point_8hpp.html">customisation_point.hpp</a></div><div·class="ttdoc">Helper·utilities·for·defining·customisation·point·objects·(CPOs).</div></div>	370	<div·class="ttc"·id="acustomisation__point_8hpp_html"><div·class="ttname"><a·href="customisation__point_8hpp.html">customisation_point.hpp</a></div><div·class="ttdoc">Helper·utilities·for·defining·customisation·point·objects·(CPOs).</div></div>
370	<div·class="ttc"·id="acustomisation__point_8hpp_html_af0212fecfa9f94ab541c42670b177627"><div·class="ttname"><a·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a></div><div·class="ttdeci">#define·SEQAN3_CPO_OVERLOAD(...)</div><div·class="ttdoc">A·macro·that·helps·to·define·a·seqan3::detail::customisation_point_object.</div><div·class="ttdef"><b>Definition</b>·customisation_point.hpp:104</div></div>	371	<div·class="ttc"·id="acustomisation__point_8hpp_html_af0212fecfa9f94ab541c42670b177627"><div·class="ttname"><a·href="customisation__point_8hpp.html#af0212fecfa9f94ab541c42670b177627">SEQAN3_CPO_OVERLOAD</a></div><div·class="ttdeci">#define·SEQAN3_CPO_OVERLOAD(...)</div><div·class="ttdoc">A·macro·that·helps·to·define·a·seqan3::detail::customisation_point_object.</div><div·class="ttdef"><b>Definition</b>·customisation_point.hpp:104</div></div>
371	<div·class="ttc"·id="agroup__alphabet__structure_html_ga978f10773c25e7ef73c9c5f72277c555"><div·class="ttname"><a·href="group__alphabet__structure.html#ga978f10773c25e7ef73c9c5f72277c555">seqan3::is_unpaired</a></div><div·class="ttdeci">constexpr·auto·is_unpaired</div><div·class="ttdoc">Check·whether·the·given·character·represents·an·unpaired·nucleotide·in·an·RNA·structure.</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:261</div></div>	372	<div·class="ttc"·id="agroup__alphabet__structure_html_ga978f10773c25e7ef73c9c5f72277c555"><div·class="ttname"><a·href="group__alphabet__structure.html#ga978f10773c25e7ef73c9c5f72277c555">seqan3::is_unpaired</a></div><div·class="ttdeci">constexpr·auto·is_unpaired</div><div·class="ttdoc">Check·whether·the·given·character·represents·an·unpaired·nucleotide·in·an·RNA·structure.</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:261</div></div>
372	<div·class="ttc"·id="agroup__alphabet__structure_html_gaa630c75bc160fdc858846a0d714880bd"><div·class="ttname"><a·href="group__alphabet__structure.html#gaa630c75bc160fdc858846a0d714880bd">seqan3::pseudoknot_id</a></div><div·class="ttdeci">constexpr·auto·pseudoknot_id</div><div·class="ttdoc">Retrieve·an·id·for·the·level·of·a·pseudoknotted·interaction·(also·known·as·'page·number').</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:454</div></div>	373	<div·class="ttc"·id="agroup__alphabet__structure_html_gaa630c75bc160fdc858846a0d714880bd"><div·class="ttname"><a·href="group__alphabet__structure.html#gaa630c75bc160fdc858846a0d714880bd">seqan3::pseudoknot_id</a></div><div·class="ttdeci">constexpr·auto·pseudoknot_id</div><div·class="ttdoc">Retrieve·an·id·for·the·level·of·a·pseudoknotted·interaction·(also·known·as·'page·number').</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:454</div></div>
373	<div·class="ttc"·id="agroup__alphabet__structure_html_gace976659271f80b74a843545f599fccc"><div·class="ttname"><a·href="group__alphabet__structure.html#gace976659271f80b74a843545f599fccc">seqan3::is_pair_close</a></div><div·class="ttdeci">constexpr·auto·is_pair_close</div><div·class="ttdoc">Check·whether·the·given·character·represents·a·leftward·interaction·in·an·RNA·structure.</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:179</div></div>	374	<div·class="ttc"·id="agroup__alphabet__structure_html_gace976659271f80b74a843545f599fccc"><div·class="ttname"><a·href="group__alphabet__structure.html#gace976659271f80b74a843545f599fccc">seqan3::is_pair_close</a></div><div·class="ttdeci">constexpr·auto·is_pair_close</div><div·class="ttdoc">Check·whether·the·given·character·represents·a·leftward·interaction·in·an·RNA·structure.</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:179</div></div>
374	<div·class="ttc"·id="agroup__alphabet__structure_html_gaf068659f322b4e8742ef27d897f63715"><div·class="ttname"><a·href="group__alphabet__structure.html#gaf068659f322b4e8742ef27d897f63715">seqan3::max_pseudoknot_depth</a></div><div·class="ttdeci">constexpr·auto·max_pseudoknot_depth</div><div·class="ttdoc">A·type·trait·that·holds·the·ability·of·the·structure·alphabet·to·represent·pseudoknots,...</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:371</div></div>	375	<div·class="ttc"·id="agroup__alphabet__structure_html_gaf068659f322b4e8742ef27d897f63715"><div·class="ttname"><a·href="group__alphabet__structure.html#gaf068659f322b4e8742ef27d897f63715">seqan3::max_pseudoknot_depth</a></div><div·class="ttdeci">constexpr·auto·max_pseudoknot_depth</div><div·class="ttdoc">A·type·trait·that·holds·the·ability·of·the·structure·alphabet·to·represent·pseudoknots,...</div><div·class="ttdef"><b>Definition</b>·alphabet/structure/concept.hpp:371</div></div>


Offset 189, 15 lines modified		Offset 189, 15 lines modified
189	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span><span·class="keyword">namespace·</span>seqan3::detail</div>	189	<div·class="line"><a·id="l00090"·name="l00090"></a><span·class="lineno">···90</span><span·class="keyword">namespace·</span>seqan3::detail</div>
190	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>{</div>	190	<div·class="line"><a·id="l00091"·name="l00091"></a><span·class="lineno">···91</span>{</div>
191	<div·class="line"><a·id="l00092"·name="l00092"></a><span·class="lineno">···92</span>·</div>	191	<div·class="line"><a·id="l00092"·name="l00092"></a><span·class="lineno">···92</span>·</div>
192	<div·class="line"><a·id="l00093"·name="l00093"></a><span·class="lineno">···93</span><span·class="comment">//·----------------------------------------------------------------------------</span></div>	192	<div·class="line"><a·id="l00093"·name="l00093"></a><span·class="lineno">···93</span><span·class="comment">//·----------------------------------------------------------------------------</span></div>
193	<div·class="line"><a·id="l00094"·name="l00094"></a><span·class="lineno">···94</span><span·class="comment">//·deferred_type</span></div>	193	<div·class="line"><a·id="l00094"·name="l00094"></a><span·class="lineno">···94</span><span·class="comment">//·deferred_type</span></div>
194	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno">···95</span><span·class="comment">//·----------------------------------------------------------------------------</span></div>	194	<div·class="line"><a·id="l00095"·name="l00095"></a><span·class="lineno">···95</span><span·class="comment">//·----------------------------------------------------------------------------</span></div>
195	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno">···96</span>·</div>	195	<div·class="line"><a·id="l00096"·name="l00096"></a><span·class="lineno">···96</span>·</div>
196	<div·class="line"><a·id="l00104"·name="l00104"></a><span·class="lineno">··104</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t,·<span·class="keyword">typename</span>...·dependent_ts></div>	196	<div·class="line"><a·id="l00104"·name="l00104"></a><span·class="lineno">··104</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t,·<span·class="keyword">typename</span>...·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">dependent_ts</a>></div>
197	<div·class="line"><a·id="l00105"·name="l00105"></a><span·class="lineno">··105</span><span·class="keyword">struct·</span>deferred_type</div>	197	<div·class="line"><a·id="l00105"·name="l00105"></a><span·class="lineno">··105</span><span·class="keyword">struct·</span>deferred_type</div>
198	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span>{</div>	198	<div·class="line"><a·id="l00106"·name="l00106"></a><span·class="lineno">··106</span>{</div>
199	<div·class="line"><a·id="l00108"·name="l00108"></a><span·class="lineno">··108</span>····<span·class="keyword">using·</span>type·=·t;</div>	199	<div·class="line"><a·id="l00108"·name="l00108"></a><span·class="lineno">··108</span>····<span·class="keyword">using·</span>type·=·t;</div>
200	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>};</div>	200	<div·class="line"><a·id="l00109"·name="l00109"></a><span·class="lineno">··109</span>};</div>
201	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span>·</div>	201	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span>·</div>
202	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t,·<span·class="keyword">typename</span>...·dependent_ts></div>	202	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·t,·<span·class="keyword">typename</span>...·dependent_ts></div>
203	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span><span·class="keyword">using·</span>deferred_type_t·=·<span·class="keyword">typename</span>·deferred_type<t,·dependent_ts...>::type;</div>	203	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span><span·class="keyword">using·</span>deferred_type_t·=·<span·class="keyword">typename</span>·deferred_type<t,·dependent_ts...>::type;</div>
Offset 221, 14 lines modified		Offset 221, 15 lines modified
221	<div·class="line"><a·id="l00148"·name="l00148"></a><span·class="lineno">··148</span><span·class="preprocessor">#if·defined(__clang__)</span></div>	221	<div·class="line"><a·id="l00148"·name="l00148"></a><span·class="lineno">··148</span><span·class="preprocessor">#if·defined(__clang__)</span></div>
222	<div·class="line"><a·id="l00149"·name="l00149"></a><span·class="lineno">··149</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·__is_same(__VA_ARGS__)</span></div>	222	<div·class="line"><a·id="l00149"·name="l00149"></a><span·class="lineno">··149</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·__is_same(__VA_ARGS__)</span></div>
223	<div·class="line"><a·id="l00150"·name="l00150"></a><span·class="lineno">··150</span><span·class="preprocessor">#elif·defined(__GNUC__)</span></div>	223	<div·class="line"><a·id="l00150"·name="l00150"></a><span·class="lineno">··150</span><span·class="preprocessor">#elif·defined(__GNUC__)</span></div>
224	<div·class="line"><a·id="l00151"·name="l00151"></a><span·class="lineno">··151</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·__is_same_as(__VA_ARGS__)</span></div>	224	<div·class="line"><a·id="l00151"·name="l00151"></a><span·class="lineno">··151</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·__is_same_as(__VA_ARGS__)</span></div>
225	<div·class="line"><a·id="l00152"·name="l00152"></a><span·class="lineno">··152</span><span·class="preprocessor">#else</span></div>	225	<div·class="line"><a·id="l00152"·name="l00152"></a><span·class="lineno">··152</span><span·class="preprocessor">#else</span></div>
226	<div·class="line"><a·id="l00153"·name="l00153"></a><span·class="lineno">··153</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·std::is_same_v<__VA_ARGS__></span></div>	226	<div·class="line"><a·id="l00153"·name="l00153"></a><span·class="lineno">··153</span><span·class="preprocessor">#····define·SEQAN3_IS_SAME(...)·std::is_same_v<__VA_ARGS__></span></div>
227	<div·class="line"><a·id="l00154"·name="l00154"></a><span·class="lineno">··154</span><span·class="preprocessor">#endif</span></div>	227	<div·class="line"><a·id="l00154"·name="l00154"></a><span·class="lineno">··154</span><span·class="preprocessor">#endif</span></div>
		228	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
228	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>	229	<div·class="ttc"·id="aconditional_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
229	<div·class="ttc"·id="aintegral_constant_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::false_type</a></div></div>	230	<div·class="ttc"·id="aintegral_constant_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/integral_constant.html">std::false_type</a></div></div>
230	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	231	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
231	<div·class="ttc"·id="aplatform_8hpp_html"><div·class="ttname"><a·href="platform_8hpp.html">platform.hpp</a></div><div·class="ttdoc">Provides·platform·and·dependency·checks.</div></div>	232	<div·class="ttc"·id="aplatform_8hpp_html"><div·class="ttname"><a·href="platform_8hpp.html">platform.hpp</a></div><div·class="ttdoc">Provides·platform·and·dependency·checks.</div></div>
232	<div·class="ttc"·id="aremove_reference_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/remove_reference.html">std::remove_reference_t</a></div></div>	233	<div·class="ttc"·id="aremove_reference_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/types/remove_reference.html">std::remove_reference_t</a></div></div>
233	<div·class="ttc"·id="astructseqan3_1_1is__constexpr__default__constructible_html"><div·class="ttname"><a·href="structseqan3_1_1is__constexpr__default__constructible.html">seqan3::is_constexpr_default_constructible</a></div><div·class="ttdoc">Whether·a·type·std::is_default_constructible·in·constexpr-context·(unary_type_trait·specialisation).</div><div·class="ttdef"><b>Definition</b>·basic.hpp:72</div></div>	234	<div·class="ttc"·id="astructseqan3_1_1is__constexpr__default__constructible_html"><div·class="ttname"><a·href="structseqan3_1_1is__constexpr__default__constructible.html">seqan3::is_constexpr_default_constructible</a></div><div·class="ttdoc">Whether·a·type·std::is_default_constructible·in·constexpr-context·(unary_type_trait·specialisation).</div><div·class="ttdef"><b>Definition</b>·basic.hpp:72</div></div>
234	<div·class="ttc"·id="astructseqan3_1_1remove__rvalue__reference_html"><div·class="ttname"><a·href="structseqan3_1_1remove__rvalue__reference.html">seqan3::remove_rvalue_reference</a></div><div·class="ttdoc">Return·the·input·type·with·&&·removed,·but·lvalue·references·preserved.</div><div·class="ttdef"><b>Definition</b>·basic.hpp:48</div></div>	235	<div·class="ttc"·id="astructseqan3_1_1remove__rvalue__reference_html"><div·class="ttname"><a·href="structseqan3_1_1remove__rvalue__reference.html">seqan3::remove_rvalue_reference</a></div><div·class="ttdoc">Return·the·input·type·with·&&·removed,·but·lvalue·references·preserved.</div><div·class="ttdef"><b>Definition</b>·basic.hpp:48</div></div>


Offset 137, 27 lines modified		Offset 137, 28 lines modified
137	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>·</div>	137	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>·</div>
138	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span><span·class="preprocessor">#include·<<a·class="code"·href="debug__stream__type_8hpp.html">seqan3/core/debug_stream/debug_stream_type.hpp</a>></span></div>	138	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span><span·class="preprocessor">#include·<<a·class="code"·href="debug__stream__type_8hpp.html">seqan3/core/debug_stream/debug_stream_type.hpp</a>></span></div>
139	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>·</div>	139	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>·</div>
140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>{</div>	141	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>{</div>
142	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span><span·class="keyword">template</span>·<></div>	142	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span><span·class="keyword">template</span>·<></div>
143	<div·class="foldopen"·id="foldopen00023"·data-start="{"·data-end="};">	143	<div·class="foldopen"·id="foldopen00023"·data-start="{"·data-end="};">
144	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html">···23</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1std__byte__printer.html">std_byte_printer</a><<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::byte></div>	144	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html">···23</a></span><span·class="keyword">struct·</span><a·class="code·hl_struct"·href="structseqan3_1_1std__byte__printer.html">std_byte_printer</a><<a·class="code·hl_namespace"·href="namespacestd.html">std</a>::<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">byte</a>></div>
145	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>{</div>	145	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>{</div>
146	<div·class="line"><a·id="l00030"·name="l00030"></a><span·class="lineno">···30</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·stream_t></div>	146	<div·class="line"><a·id="l00030"·name="l00030"></a><span·class="lineno">···30</span>····<span·class="keyword">template</span>·<<span·class="keyword">typename</span>·stream_t></div>
147	<div·class="foldopen"·id="foldopen00031"·data-start="{"·data-end="}">	147	<div·class="foldopen"·id="foldopen00031"·data-start="{"·data-end="}">
148	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">···31</a></span>····<span·class="keyword">constexpr</span>·<span·class="keywordtype">void</span>·<a·class="code·hl_function"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">operator()</a>(stream_t·&·stream,·std::byte·<span·class="keyword">const</span>·arg)<span·class="keyword">·const</span></div>	148	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">···31</a></span>····<span·class="keyword">constexpr</span>·<span·class="keywordtype">void</span>·<a·class="code·hl_function"·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">operator()</a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">stream_t</a>·&·stream,·std::byte·<span·class="keyword">const</span>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">arg</a>)<span·class="keyword">·const</span></div>
149	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span><span·class="keyword">····</span>{</div>	149	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span><span·class="keyword">····</span>{</div>
150	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>········stream·<<·std::to_integer<uint8_t>(arg);</div>	150	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>········<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">stream·<<·std::to_integer<uint8_t></a>(<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">arg</a>);</div>
151	<div·class="line"><a·id="l00034"·name="l00034"></a><span·class="lineno">···34</span>····}</div>	151	<div·class="line"><a·id="l00034"·name="l00034"></a><span·class="lineno">···34</span>····}</div>
152	</div>	152	</div>
153	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno">···35</span>};</div>	153	<div·class="line"><a·id="l00035"·name="l00035"></a><span·class="lineno">···35</span>};</div>
154	</div>	154	</div>
155	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>·</div>	155	<div·class="line"><a·id="l00036"·name="l00036"></a><span·class="lineno">···36</span>·</div>
156	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span>}·<span·class="comment">//·namespace·seqan3</span></div>	156	<div·class="line"><a·id="l00037"·name="l00037"></a><span·class="lineno">···37</span>}·<span·class="comment">//·namespace·seqan3</span></div>
		157	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
157	<div·class="ttc"·id="adebug__stream__type_8hpp_html"><div·class="ttname"><a·href="debug__stream__type_8hpp.html">debug_stream_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::debug_stream·and·related·types.</div></div>	158	<div·class="ttc"·id="adebug__stream__type_8hpp_html"><div·class="ttname"><a·href="debug__stream__type_8hpp.html">debug_stream_type.hpp</a></div><div·class="ttdoc">Provides·seqan3::debug_stream·and·related·types.</div></div>
158	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	159	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
159	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>	160	<div·class="ttc"·id="anamespacestd_html"><div·class="ttname"><a·href="namespacestd.html">std</a></div><div·class="ttdoc">SeqAn·specific·customisations·in·the·standard·namespace.</div></div>
160	<div·class="ttc"·id="astructseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4_html_aa489edc5148f2f47c452cc5454ff40cb"><div·class="ttname"><a·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">seqan3::std_byte_printer<·std::byte·>::operator()</a></div><div·class="ttdeci">constexpr·void·operator()(stream_t·&stream,·std::byte·const·arg)·const</div><div·class="ttdoc">Prints·the·byte·as·uint8_t·value.</div><div·class="ttdef"><b>Definition</b>·byte.hpp:31</div></div>	161	<div·class="ttc"·id="astructseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4_html_aa489edc5148f2f47c452cc5454ff40cb"><div·class="ttname"><a·href="structseqan3_1_1std__byte__printer_3_01std_1_1byte_01_4.html#aa489edc5148f2f47c452cc5454ff40cb">seqan3::std_byte_printer<·std::byte·>::operator()</a></div><div·class="ttdeci">constexpr·void·operator()(stream_t·&stream,·std::byte·const·arg)·const</div><div·class="ttdoc">Prints·the·byte·as·uint8_t·value.</div><div·class="ttdef"><b>Definition</b>·byte.hpp:31</div></div>
161	<div·class="ttc"·id="astructseqan3_1_1std__byte__printer_html"><div·class="ttname"><a·href="structseqan3_1_1std__byte__printer.html">seqan3::std_byte_printer</a></div><div·class="ttdef"><b>Definition</b>·default_printer.hpp:45</div></div>	162	<div·class="ttc"·id="astructseqan3_1_1std__byte__printer_html"><div·class="ttname"><a·href="structseqan3_1_1std__byte__printer.html">seqan3::std_byte_printer</a></div><div·class="ttdef"><b>Definition</b>·default_printer.hpp:45</div></div>
162	<div·class="ttc"·id="atype_traits_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/type_traits.html">type_traits</a></div></div>	163	<div·class="ttc"·id="atype_traits_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/type_traits.html">type_traits</a></div></div>
163	</div><!--·fragment·--></div><!--·contents·-->	164	</div><!--·fragment·--></div><!--·contents·-->


Offset 142, 29 lines modified		Offset 142, 29 lines modified
142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>	142	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>{</div>
143	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span><span·class="keyword">template</span>·<alphabet·alphabet_type></div>	143	<div·class="line"><a·id="l00063"·name="l00063"></a><span·class="lineno">···63</span><span·class="keyword">template</span>·<alphabet·alphabet_type></div>
144	<div·class="foldopen"·id="foldopen00064"·data-start="{"·data-end="};">	144	<div·class="foldopen"·id="foldopen00064"·data-start="{"·data-end="};">
145	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno"><a·class="line"·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">···64</a></span><span·class="keyword">inline</span>·<span·class="keyword">auto</span>·<span·class="keyword">const</span>·<a·class="code·hl_variable"·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">char_to</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1views_1_1deep.html">deep</a>{std::views::transform(</div>	145	<div·class="line"><a·id="l00064"·name="l00064"></a><span·class="lineno"><a·class="line"·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">···64</a></span><span·class="keyword">inline</span>·<span·class="keyword">auto</span>·<span·class="keyword">const</span>·<a·class="code·hl_variable"·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">char_to</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1views_1_1deep.html">deep</a>{std::views::transform(</div>
146	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>····[](<span·class="keyword">auto</span>·&&·in)</div>	146	<div·class="line"><a·id="l00065"·name="l00065"></a><span·class="lineno">···65</span>····[](<span·class="keyword">auto</span>·&&·in)</div>
147	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>····{</div>	147	<div·class="line"><a·id="l00066"·name="l00066"></a><span·class="lineno">···66</span>····{</div>
148	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>········<span·class="keyword">static_assert</span>(</div>	148	<div·class="line"><a·id="l00067"·name="l00067"></a><span·class="lineno">···67</span>········<span·class="keyword">static_assert</span>(</div>
149	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>············std::common_reference_with<<span·class="keyword">decltype</span>(in),·<a·class="code·hl_ty~~pedef~~"·href="~~group__~~alpha~~bet.html#g~~a8~~672f0~~16~~bc06fa779869e8f56079a907~~">alphabet_char_t<alphabet_type></a>>,</div>	149	<div·class="line"><a·id="l00068"·name="l00068"></a><span·class="lineno">···68</span>············std::common_reference_with<<span·class="keyword">decltype</span>(in),·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">alphabet_char_t<alphabet_type></a>>,</div>
150	<div·class="line"><a·id="l00069"·name="l00069"></a><span·class="lineno">···69</span>············<span·class="stringliteral">"The·innermost·value·type·must·have·a·common·reference·to·underlying·char·type·of·alphabet_type."</span>);</div>	150	<div·class="line"><a·id="l00069"·name="l00069"></a><span·class="lineno">···69</span>············<span·class="stringliteral">"The·innermost·value·type·must·have·a·common·reference·to·underlying·char·type·of·alphabet_type."</span>);</div>
151	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>········<span·class="comment">//·call·element-wise·assign_char·from·the·alphabet</span></div>	151	<div·class="line"><a·id="l00070"·name="l00070"></a><span·class="lineno">···70</span>········<span·class="comment">//·call·element-wise·assign_char·from·the·alphabet</span></div>
152	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>········<span·class="keywordflow">return</span>·<a·class="code·hl_variable"·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">assign_char_to</a>(in,·alphabet_type{});</div>	152	<div·class="line"><a·id="l00071"·name="l00071"></a><span·class="lineno">···71</span>········<span·class="keywordflow">return</span>·<a·class="code·hl_variable"·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">assign_char_to</a>(in,·alphabet_type{});</div>
153	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>····})};</div>	153	<div·class="line"><a·id="l00072"·name="l00072"></a><span·class="lineno">···72</span>····})};</div>
154	</div>	154	</div>
155	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>·</div>	155	<div·class="line"><a·id="l00073"·name="l00073"></a><span·class="lineno">···73</span>·</div>
156	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span>}·<span·class="comment">//·namespace·seqan3::views</span></div>	156	<div·class="line"><a·id="l00074"·name="l00074"></a><span·class="lineno">···74</span>}·<span·class="comment">//·namespace·seqan3::views</span></div>
157	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>	157	<div·class="ttc"·id="aalphabet_2concept_8hpp_html"><div·class="ttname"><a·href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div·class="ttdoc">Core·alphabet·concept·and·free·function/type·trait·wrappers.</div></div>
158	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>	158	<div·class="ttc"·id="abasic_8hpp_html"><div·class="ttname"><a·href="basic_8hpp.html">basic.hpp</a></div><div·class="ttdoc">Provides·various·type·traits·on·generic·types.</div></div>
		159	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
159	<div·class="ttc"·id="aclassseqan3_1_1views_1_1deep_html"><div·class="ttname"><a·href="classseqan3_1_1views_1_1deep.html">seqan3::views::deep</a></div><div·class="ttdoc">A·wrapper·type·around·an·existing·view·adaptor·that·enables·"deep·view"·behaviour·for·that·view.</div><div·class="ttdef"><b>Definition</b>·deep.hpp:101</div></div>	160	<div·class="ttc"·id="aclassseqan3_1_1views_1_1deep_html"><div·class="ttname"><a·href="classseqan3_1_1views_1_1deep.html">seqan3::views::deep</a></div><div·class="ttdoc">A·wrapper·type·around·an·existing·view·adaptor·that·enables·"deep·view"·behaviour·for·that·view.</div><div·class="ttdef"><b>Definition</b>·deep.hpp:101</div></div>
160	<div·class="ttc"·id="adeep_8hpp_html"><div·class="ttname"><a·href="deep_8hpp.html">deep.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::deep.</div></div>	161	<div·class="ttc"·id="adeep_8hpp_html"><div·class="ttname"><a·href="deep_8hpp.html">deep.hpp</a></div><div·class="ttdoc">Provides·seqan3::views::deep.</div></div>
161	<div·class="ttc"·id="agroup__alphabet__views_html_gab06909054571ac30445837f22d9eef73"><div·class="ttname"><a·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">seqan3::views::char_to</a></div><div·class="ttdeci">auto·const·char_to</div><div·class="ttdoc">A·view·over·an·alphabet,·given·a·range·of·characters.</div><div·class="ttdef"><b>Definition</b>·char_to.hpp:64</div></div>	162	<div·class="ttc"·id="agroup__alphabet__views_html_gab06909054571ac30445837f22d9eef73"><div·class="ttname"><a·href="group__alphabet__views.html#gab06909054571ac30445837f22d9eef73">seqan3::views::char_to</a></div><div·class="ttdeci">auto·const·char_to</div><div·class="ttdoc">A·view·over·an·alphabet,·given·a·range·of·characters.</div><div·class="ttdef"><b>Definition</b>·char_to.hpp:64</div></div>
162	<div·class="ttc"·id="agroup__alphabet_html_ga0e5822fe4301e4e613517d32e424f932"><div·class="ttname"><a·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">seqan3::assign_char_to</a></div><div·class="ttdeci">constexpr·auto·assign_char_to</div><div·class="ttdoc">Assign·a·character·to·an·alphabet·object.</div><div·class="ttdef"><b>Definition</b>·alphabet/concept.hpp:517</div></div>	163	<div·class="ttc"·id="agroup__alphabet_html_ga0e5822fe4301e4e613517d32e424f932"><div·class="ttname"><a·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">seqan3::assign_char_to</a></div><div·class="ttdeci">constexpr·auto·assign_char_to</div><div·class="ttdoc">Assign·a·character·to·an·alphabet·object.</div><div·class="ttdef"><b>Definition</b>·alphabet/concept.hpp:517</div></div>
163	<div·class="ttc"·id="agroup__alphabet_html_ga8672f016bc06fa779869e8f56079a907"><div·class="ttname"><a·href="group__alphabet.html#ga8672f016bc06fa779869e8f56079a907">seqan3::alphabet_char_t</a></div><div·class="ttdeci">decltype(seqan3::to_char(std::declval<·alphabet_type·const··>()))·alphabet_char_t</div><div·class="ttdoc">The·char_type·of·the·alphabet;·defined·as·the·return·type·of·seqan3::to_char.</div><div·class="ttdef"><b>Definition</b>·alphabet/concept.hpp:393</div></div>
164	<div·class="ttc"·id="anamespaceseqan3_1_1views_html"><div·class="ttname"><a·href="namespaceseqan3_1_1views.html">seqan3::views</a></div><div·class="ttdoc">The·SeqAn·namespace·for·views.</div><div·class="ttdef"><b>Definition</b>·char_strictly_to.hpp:19</div></div>	164	<div·class="ttc"·id="anamespaceseqan3_1_1views_html"><div·class="ttname"><a·href="namespaceseqan3_1_1views.html">seqan3::views</a></div><div·class="ttdoc">The·SeqAn·namespace·for·views.</div><div·class="ttdef"><b>Definition</b>·char_strictly_to.hpp:19</div></div>
165	</div><!--·fragment·--></div><!--·contents·-->	165	</div><!--·fragment·--></div><!--·contents·-->
166	</div><!--·doc-content·-->	166	</div><!--·doc-content·-->
167	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin	167	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin
168	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik	168	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik
169	·····SPDX-License-Identifier:·CC0-1.0	169	·····SPDX-License-Identifier:·CC0-1.0
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134	<div·class="line"><a·id="l00011"·name="l00011"></a><span·class="lineno">···11</span>·</div>	134	<div·class="line"><a·id="l00011"·name="l00011"></a><span·class="lineno">···11</span>·</div>
135	<div·class="line"><a·id="l00012"·name="l00012"></a><span·class="lineno">···12</span><span·class="preprocessor">#include·<seqan3/contrib/std/chunk_view.hpp></span></div>	135	<div·class="line"><a·id="l00012"·name="l00012"></a><span·class="lineno">···12</span><span·class="preprocessor">#include·<seqan3/contrib/std/chunk_view.hpp></span></div>
136	<div·class="line"><a·id="l00013"·name="l00013"></a><span·class="lineno">···13</span><span·class="preprocessor">#include·<<a·class="code"·href="platform_8hpp.html">seqan3/core/platform.hpp</a>></span></div>	136	<div·class="line"><a·id="l00013"·name="l00013"></a><span·class="lineno">···13</span><span·class="preprocessor">#include·<<a·class="code"·href="platform_8hpp.html">seqan3/core/platform.hpp</a>></span></div>
137	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>·</div>	137	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>·</div>
138	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3_1_1views.html">seqan3::views</a></div>	138	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3_1_1views.html">seqan3::views</a></div>
139	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>{</div>	139	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>{</div>
140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>	140	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>·</div>
141	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno"><a·class="line"·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">···23</a></span><span·class="keyword">using·</span>SEQAN3_DOXYGEN_ONLY(<a·class="code·hl_typedef"·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">chunk</a>·=)·seqan::stl::views::chunk;</div>	141	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno"><a·class="line"·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">···23</a></span><span·class="keyword">using·</span><a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">SEQAN3_DOXYGEN_ONLY</a>(<a·class="code·hl_typedef"·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">chunk</a>·=)·seqan::stl::views::chunk;</div>
142	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>·</div>	142	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>·</div>
143	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>}·<span·class="comment">//·namespace·seqan3::views</span></div>	143	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>}·<span·class="comment">//·namespace·seqan3::views</span></div>
		144	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
144	<div·class="ttc"·id="agroup__utility__views_html_gaeae83794d7bd83b6fd297f68d87f5f14"><div·class="ttname"><a·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">seqan3::views::chunk</a></div><div·class="ttdeci">seqan::stl::views::chunk·chunk</div><div·class="ttdoc">A·view·adaptor·that·divides·a·range·into·chunks.·<dl·class="no-api">This·entity·is·not·part·of·the·Se...</div><div·class="ttdef"><b>Definition</b>·chunk.hpp:23</div></div>	145	<div·class="ttc"·id="agroup__utility__views_html_gaeae83794d7bd83b6fd297f68d87f5f14"><div·class="ttname"><a·href="group__utility__views.html#gaeae83794d7bd83b6fd297f68d87f5f14">seqan3::views::chunk</a></div><div·class="ttdeci">seqan::stl::views::chunk·chunk</div><div·class="ttdoc">A·view·adaptor·that·divides·a·range·into·chunks.·<dl·class="no-api">This·entity·is·not·part·of·the·Se...</div><div·class="ttdef"><b>Definition</b>·chunk.hpp:23</div></div>
145	<div·class="ttc"·id="anamespaceseqan3_1_1views_html"><div·class="ttname"><a·href="namespaceseqan3_1_1views.html">seqan3::views</a></div><div·class="ttdoc">The·SeqAn·namespace·for·views.</div><div·class="ttdef"><b>Definition</b>·char_strictly_to.hpp:19</div></div>	146	<div·class="ttc"·id="anamespaceseqan3_1_1views_html"><div·class="ttname"><a·href="namespaceseqan3_1_1views.html">seqan3::views</a></div><div·class="ttdoc">The·SeqAn·namespace·for·views.</div><div·class="ttdef"><b>Definition</b>·char_strictly_to.hpp:19</div></div>
146	<div·class="ttc"·id="aplatform_8hpp_html"><div·class="ttname"><a·href="platform_8hpp.html">platform.hpp</a></div><div·class="ttdoc">Provides·platform·and·dependency·checks.</div></div>	147	<div·class="ttc"·id="aplatform_8hpp_html"><div·class="ttname"><a·href="platform_8hpp.html">platform.hpp</a></div><div·class="ttdoc">Provides·platform·and·dependency·checks.</div></div>
147	</div><!--·fragment·--></div><!--·contents·-->	148	</div><!--·fragment·--></div><!--·contents·-->
148	</div><!--·doc-content·-->	149	</div><!--·doc-content·-->
149	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin	150	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin
150	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik	151	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik


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150	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1cigar__clipped__bases.html#a6dc2b2b5c7cc98feba12ac708f536fc3">···31</a></span>····uint32_t·<a·class="code·hl_variable"·href="structseqan3_1_1cigar__clipped__bases.html#a6dc2b2b5c7cc98feba12ac708f536fc3">soft_back</a>{};··</div>	150	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno"><a·class="line"·href="structseqan3_1_1cigar__clipped__bases.html#a6dc2b2b5c7cc98feba12ac708f536fc3">···31</a></span>····uint32_t·<a·class="code·hl_variable"·href="structseqan3_1_1cigar__clipped__bases.html#a6dc2b2b5c7cc98feba12ac708f536fc3">soft_back</a>{};··</div>
151	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>};</div>	151	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>};</div>
152	</div>	152	</div>
153	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>·</div>	153	<div·class="line"><a·id="l00033"·name="l00033"></a><span·class="lineno">···33</span>·</div>
154	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alignment_type></div>	154	<div·class="line"><a·id="l00110"·name="l00110"></a><span·class="lineno">··110</span><span·class="keyword">template</span>·<<span·class="keyword">typename</span>·alignment_type></div>
155	<div·class="foldopen"·id="foldopen00111"·data-start="{"·data-end="}">	155	<div·class="foldopen"·id="foldopen00111"·data-start="{"·data-end="}">
156	<div·class="line"><a·id="l00111"·name="l00111"></a><span·class="lineno"><a·class="line"·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">··111</a></span><span·class="keyword">inline</span>·<span·class="keyword">auto</span>·<a·class="code·hl_function"·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">cigar_from_alignment</a>(alignment_type·<span·class="keyword">const</span>·&·<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">alignment</a>,</div>	156	<div·class="line"><a·id="l00111"·name="l00111"></a><span·class="lineno"><a·class="line"·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">··111</a></span><span·class="keyword">inline</span>·<span·class="keyword">auto</span>·<a·class="code·hl_function"·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">cigar_from_alignment</a>(alignment_type·<span·class="keyword">const</span>·&·<a·class="code·hl_enumvalue"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">alignment</a>,</div>
157	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>·································<a·class="code·hl_struct"·href="structseqan3_1_1cigar__clipped__bases.html">cigar_clipped_bases</a>·<span·class="keyword">const</span>·&·clipped_bases·=·{},</div>	157	<div·class="line"><a·id="l00112"·name="l00112"></a><span·class="lineno">··112</span>·································<a·class="code·hl_struct"·href="structseqan3_1_1cigar__clipped__bases.html">cigar_clipped_bases</a>·<span·class="keyword">const</span>·&·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">clipped_bases</a>·=·{},</div>
158	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>·································<span·class="keywordtype">bool</span>·<span·class="keyword">const</span>·extended_cigar·=·<span·class="keyword">false</span>)</div>	158	<div·class="line"><a·id="l00113"·name="l00113"></a><span·class="lineno">··113</span>·································<span·class="keywordtype">bool</span>·<span·class="keyword">const</span>·extended_cigar·=·<span·class="keyword">false</span>)</div>
159	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>{</div>	159	<div·class="line"><a·id="l00114"·name="l00114"></a><span·class="lineno">··114</span>{</div>
160	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>····<span·class="keyword">static_assert</span>((<a·class="code·hl_interface"·href="interfaceseqan3_1_1tuple__like.html">tuple_like<std::remove_cvref_t<alignment_type></a>></div>	160	<div·class="line"><a·id="l00115"·name="l00115"></a><span·class="lineno">··115</span>····<span·class="keyword">static_assert</span>((<a·class="code·hl_interface"·href="interfaceseqan3_1_1tuple__like.html">tuple_like<std::remove_cvref_t<alignment_type></a>></div>
161	<div·class="line"><a·id="l00116"·name="l00116"></a><span·class="lineno">··116</span>···················&&·std::tuple_size_v<std::remove_cvref_t<alignment_type>>·==·2),</div>	161	<div·class="line"><a·id="l00116"·name="l00116"></a><span·class="lineno">··116</span>···················&&·std::tuple_size_v<std::remove_cvref_t<alignment_type>>·==·2),</div>
162	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>··················<span·class="stringliteral">"The·alignment·must·be·a·std::pair·or·std::tuple·of·size·2."</span>);</div>	162	<div·class="line"><a·id="l00117"·name="l00117"></a><span·class="lineno">··117</span>··················<span·class="stringliteral">"The·alignment·must·be·a·std::pair·or·std::tuple·of·size·2."</span>);</div>
163	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span>·</div>	163	<div·class="line"><a·id="l00118"·name="l00118"></a><span·class="lineno">··118</span>·</div>
164	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span>····<span·class="keyword">static_assert</span>(</div>	164	<div·class="line"><a·id="l00119"·name="l00119"></a><span·class="lineno">··119</span>····<span·class="keyword">static_assert</span>(</div>
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281	<div·class="line"><a·id="l00236"·name="l00236"></a><span·class="lineno">··236</span>}</div>	281	<div·class="line"><a·id="l00236"·name="l00236"></a><span·class="lineno">··236</span>}</div>
282	</div>	282	</div>
283	<div·class="line"><a·id="l00237"·name="l00237"></a><span·class="lineno">··237</span>·</div>	283	<div·class="line"><a·id="l00237"·name="l00237"></a><span·class="lineno">··237</span>·</div>
284	<div·class="line"><a·id="l00238"·name="l00238"></a><span·class="lineno">··238</span>}·<span·class="comment">//·namespace·seqan3</span></div>	284	<div·class="line"><a·id="l00238"·name="l00238"></a><span·class="lineno">··238</span>}·<span·class="comment">//·namespace·seqan3</span></div>
285	<div·class="ttc"·id="aalphabet_2cigar_2cigar_8hpp_html"><div·class="ttname"><a·href="alphabet_2cigar_2cigar_8hpp.html">cigar.hpp</a></div><div·class="ttdoc">Provides·the·seqan3::cigar·alphabet.</div></div>	285	<div·class="ttc"·id="aalphabet_2cigar_2cigar_8hpp_html"><div·class="ttname"><a·href="alphabet_2cigar_2cigar_8hpp.html">cigar.hpp</a></div><div·class="ttdoc">Provides·the·seqan3::cigar·alphabet.</div></div>
286	<div·class="ttc"·id="aarray_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/array.html">std::array</a></div></div>	286	<div·class="ttc"·id="aarray_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/array.html">std::array</a></div></div>
287	<div·class="ttc"·id="aclassseqan3_1_1cigar_html_abf84b339ea4ec09777606f4c5442c32f"><div·class="ttname"><a·href="classseqan3_1_1cigar.html#abf84b339ea4ec09777606f4c5442c32f">seqan3::cigar::operation</a></div><div·class="ttdeci">exposition_only::cigar_operation·operation</div><div·class="ttdoc">The·(extended)·cigar·operation·alphabet·of·M,D,I,H,N,P,S,X,=.</div><div·class="ttdef"><b>Definition</b>·alphabet/cigar/cigar.hpp:93</div></div>	287	<div·class="ttc"·id="aclassseqan3_1_1cigar_html_abf84b339ea4ec09777606f4c5442c32f"><div·class="ttname"><a·href="classseqan3_1_1cigar.html#abf84b339ea4ec09777606f4c5442c32f">seqan3::cigar::operation</a></div><div·class="ttdeci">exposition_only::cigar_operation·operation</div><div·class="ttdoc">The·(extended)·cigar·operation·alphabet·of·M,D,I,H,N,P,S,X,=.</div><div·class="ttdef"><b>Definition</b>·alphabet/cigar/cigar.hpp:93</div></div>
		288	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
288	<div·class="ttc"·id="aemplace_back_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/vector/emplace_back.html">std::vector::emplace_back</a></div><div·class="ttdeci">T·emplace_back(T...·args)</div></div>	289	<div·class="ttc"·id="aemplace_back_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/container/vector/emplace_back.html">std::vector::emplace_back</a></div><div·class="ttdeci">T·emplace_back(T...·args)</div></div>
289	<div·class="ttc"·id="agap_8hpp_html"><div·class="ttname"><a·href="gap_8hpp.html">gap.hpp</a></div><div·class="ttdoc">Provides·seqan3::gap.</div></div>	290	<div·class="ttc"·id="agap_8hpp_html"><div·class="ttname"><a·href="gap_8hpp.html">gap.hpp</a></div><div·class="ttdoc">Provides·seqan3::gap.</div></div>
290	<div·class="ttc"·id="agroup__alphabet_html_ga0e5822fe4301e4e613517d32e424f932"><div·class="ttname"><a·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">seqan3::assign_char_to</a></div><div·class="ttdeci">constexpr·auto·assign_char_to</div><div·class="ttdoc">Assign·a·character·to·an·alphabet·object.</div><div·class="ttdef"><b>Definition</b>·alphabet/concept.hpp:517</div></div>	291	<div·class="ttc"·id="agroup__alphabet_html_ga0e5822fe4301e4e613517d32e424f932"><div·class="ttname"><a·href="group__alphabet.html#ga0e5822fe4301e4e613517d32e424f932">seqan3::assign_char_to</a></div><div·class="ttdeci">constexpr·auto·assign_char_to</div><div·class="ttdoc">Assign·a·character·to·an·alphabet·object.</div><div·class="ttdef"><b>Definition</b>·alphabet/concept.hpp:517</div></div>
291	<div·class="ttc"·id="agroup__cigar__conversion_html_ga1fbec9125252cdbed52842a4164b957a"><div·class="ttname"><a·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">seqan3::cigar_from_alignment</a></div><div·class="ttdeci">auto·cigar_from_alignment(alignment_type·const·&alignment,·cigar_clipped_bases·const·&clipped_bases={},·bool·const·extended_cigar=false)</div><div·class="ttdoc">Creates·a·CIGAR·string·(SAM·format)·given·a·seqan3::detail::pairwise_alignment·represented·by·two·seq...</div><div·class="ttdef"><b>Definition</b>·cigar_from_alignment.hpp:111</div></div>	292	<div·class="ttc"·id="agroup__cigar__conversion_html_ga1fbec9125252cdbed52842a4164b957a"><div·class="ttname"><a·href="group__cigar__conversion.html#ga1fbec9125252cdbed52842a4164b957a">seqan3::cigar_from_alignment</a></div><div·class="ttdeci">auto·cigar_from_alignment(alignment_type·const·&alignment,·cigar_clipped_bases·const·&clipped_bases={},·bool·const·extended_cigar=false)</div><div·class="ttdoc">Creates·a·CIGAR·string·(SAM·format)·given·a·seqan3::detail::pairwise_alignment·represented·by·two·seq...</div><div·class="ttdef"><b>Definition</b>·cigar_from_alignment.hpp:111</div></div>
292	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a57c438316d1b66ac3153091ebf6c1e19"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a57c438316d1b66ac3153091ebf6c1e19">seqan3::field::ref_seq</a></div><div·class="ttdeci">@·ref_seq</div><div·class="ttdoc">The·(reference)·"sequence"·information,·usually·a·range·of·nucleotides·or·amino·acids.</div></div>	293	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a57c438316d1b66ac3153091ebf6c1e19"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a57c438316d1b66ac3153091ebf6c1e19">seqan3::field::ref_seq</a></div><div·class="ttdeci">@·ref_seq</div><div·class="ttdoc">The·(reference)·"sequence"·information,·usually·a·range·of·nucleotides·or·amino·acids.</div></div>
293	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">seqan3::field::alignment</a></div><div·class="ttdeci">@·alignment</div><div·class="ttdoc">The·(pairwise)·alignment·stored·in·an·object·that·models·seqan3::detail::pairwise_alignment.</div></div>	294	<div·class="ttc"·id="agroup__io_html_gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e"><div·class="ttname"><a·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a5a159214b169da90d96590d47fff379e">seqan3::field::alignment</a></div><div·class="ttdeci">@·alignment</div><div·class="ttdoc">The·(pairwise)·alignment·stored·in·an·object·that·models·seqan3::detail::pairwise_alignment.</div></div>
294	<div·class="ttc"·id="agroup__utility__type__pack_html_ga340a7b02a1effd95a4035c4bd68e0baa"><div·class="ttname"><a·href="group__utility__type__pack.html#ga340a7b02a1effd95a4035c4bd68e0baa">seqan3::pack_traits::count</a></div><div·class="ttdeci">constexpr·ptrdiff_t·count</div><div·class="ttdoc">Count·the·occurrences·of·a·type·in·a·pack.</div><div·class="ttdef"><b>Definition</b>·type_pack/traits.hpp:161</div></div>	295	<div·class="ttc"·id="agroup__utility__type__pack_html_ga340a7b02a1effd95a4035c4bd68e0baa"><div·class="ttname"><a·href="group__utility__type__pack.html#ga340a7b02a1effd95a4035c4bd68e0baa">seqan3::pack_traits::count</a></div><div·class="ttdeci">constexpr·ptrdiff_t·count</div><div·class="ttdoc">Count·the·occurrences·of·a·type·in·a·pack.</div><div·class="ttdef"><b>Definition</b>·type_pack/traits.hpp:161</div></div>


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137	<div·id="dynsection-0-content"·class="dyncontent"·style="display:none;">	137	<div·id="dynsection-0-content"·class="dyncontent"·style="display:none;">
138	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1align__cfg_1_1detail_1_1result__type__inherit__graph.svg"·width="190"·height="154"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>	138	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1align__cfg_1_1detail_1_1result__type__inherit__graph.svg"·width="190"·height="154"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
139	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>	139	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>
140	<table·class="memberdecls">	140	<table·class="memberdecls">
141	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-types"·name="pub-types"></a>	141	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-types"·name="pub-types"></a>
142	Public·Types</h2></td></tr>	142	Public·Types</h2></td></tr>
143	<tr·class="memitem:abe3a4d01cf5543b309ffb8f785595862"·id="r_abe3a4d01cf5543b309ffb8f785595862"><td·class="memItemLeft"·align="right"·valign="top"><a·id="abe3a4d01cf5543b309ffb8f785595862"·name="abe3a4d01cf5543b309ffb8f785595862"></a>	143	<tr·class="memitem:abe3a4d01cf5543b309ffb8f785595862"·id="r_abe3a4d01cf5543b309ffb8f785595862"><td·class="memItemLeft"·align="right"·valign="top"><a·id="abe3a4d01cf5543b309ffb8f785595862"·name="abe3a4d01cf5543b309ffb8f785595862"></a>
144	using </td><td·class="memItemRight"·valign="bottom"><b>type</b>·=·alignment_result_t</td></tr>	144	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">using</a> </td><td·class="memItemRight"·valign="bottom"><b>type</b>·=·alignment_result_t</td></tr>
145	<tr·class="memdesc:abe3a4d01cf5543b309ffb8f785595862"><td·class="mdescLeft"> </td><td·class="mdescRight">The·result·type.·<br·/></td></tr>	145	<tr·class="memdesc:abe3a4d01cf5543b309ffb8f785595862"><td·class="mdescLeft"> </td><td·class="mdescRight">The·result·type.·<br·/></td></tr>
146	<tr·class="separator:abe3a4d01cf5543b309ffb8f785595862"><td·class="memSeparator"·colspan="2"> </td></tr>	146	<tr·class="separator:abe3a4d01cf5543b309ffb8f785595862"><td·class="memSeparator"·colspan="2"> </td></tr>
147	</table><table·class="memberdecls">	147	</table><table·class="memberdecls">
148	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	148	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
149	Public·Member·Functions</h2></td></tr>	149	Public·Member·Functions</h2></td></tr>
150	<tr><td·colspan="2"><div·class="groupHeader">Constructor,·destructor·and·assignment</div></td></tr>	150	<tr><td·colspan="2"><div·class="groupHeader">Constructor,·destructor·and·assignment</div></td></tr>
151	<tr·class="memitem:a22d383f4706055b00870fb2bd9e60b55"·id="r_a22d383f4706055b00870fb2bd9e60b55"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a22d383f4706055b00870fb2bd9e60b55"·name="a22d383f4706055b00870fb2bd9e60b55"></a>	151	<tr·class="memitem:a22d383f4706055b00870fb2bd9e60b55"·id="r_a22d383f4706055b00870fb2bd9e60b55"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a22d383f4706055b00870fb2bd9e60b55"·name="a22d383f4706055b00870fb2bd9e60b55"></a>
152	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·()=default</td></tr>	152	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
153	<tr·class="memdesc:a22d383f4706055b00870fb2bd9e60b55"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	153	<tr·class="memdesc:a22d383f4706055b00870fb2bd9e60b55"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
154	<tr·class="separator:a22d383f4706055b00870fb2bd9e60b55"><td·class="memSeparator"·colspan="2"> </td></tr>	154	<tr·class="separator:a22d383f4706055b00870fb2bd9e60b55"><td·class="memSeparator"·colspan="2"> </td></tr>
155	<tr·class="memitem:a23871392240dda339f6e89bdc5566b40"·id="r_a23871392240dda339f6e89bdc5566b40"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a23871392240dda339f6e89bdc5566b40"·name="a23871392240dda339f6e89bdc5566b40"></a>	155	<tr·class="memitem:a23871392240dda339f6e89bdc5566b40"·id="r_a23871392240dda339f6e89bdc5566b40"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a23871392240dda339f6e89bdc5566b40"·name="a23871392240dda339f6e89bdc5566b40"></a>
156	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·const·~~&am~~p;)=defa~~ult~~</td></tr>	156	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·<a·class="el"·hr[·...·truncated·by·diffoscope;·len:·134,·SHA:·b8586cdbf88a140c3a4fc57944a2c40226e50e1322a5463f44a3528153edcc66·...·]</td></tr>
157	<tr·class="memdesc:a23871392240dda339f6e89bdc5566b40"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	157	<tr·class="memdesc:a23871392240dda339f6e89bdc5566b40"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
158	<tr·class="separator:a23871392240dda339f6e89bdc5566b40"><td·class="memSeparator"·colspan="2"> </td></tr>	158	<tr·class="separator:a23871392240dda339f6e89bdc5566b40"><td·class="memSeparator"·colspan="2"> </td></tr>
159	<tr·class="memitem:ae97b2eb0ed6a724d2f13ffe13c6de481"·id="r_ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ae97b2eb0ed6a724d2f13ffe13c6de481"·name="ae97b2eb0ed6a724d2f13ffe13c6de481"></a>	159	<tr·class="memitem:ae97b2eb0ed6a724d2f13ffe13c6de481"·id="r_ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ae97b2eb0ed6a724d2f13ffe13c6de481"·name="ae97b2eb0ed6a724d2f13ffe13c6de481"></a>
160	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·&&)=defa~~ult~~</td></tr>	160	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·&&)=<a·c[·...·truncated·by·diffoscope;·len:·68,·SHA:·e8dbca2397e1447e1d81d28e41718352a924500c433f28337dae1f0c7e9d958f·...·]</td></tr>
161	<tr·class="memdesc:ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	161	<tr·class="memdesc:ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
162	<tr·class="separator:ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="memSeparator"·colspan="2"> </td></tr>	162	<tr·class="separator:ae97b2eb0ed6a724d2f13ffe13c6de481"><td·class="memSeparator"·colspan="2"> </td></tr>
163	<tr·class="memitem:ab950fb990ea4a77d93ff24622892af13"·id="r_ab950fb990ea4a77d93ff24622892af13"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab950fb990ea4a77d93ff24622892af13"·name="ab950fb990ea4a77d93ff24622892af13"></a>	163	<tr·class="memitem:ab950fb990ea4a77d93ff24622892af13"·id="r_ab950fb990ea4a77d93ff24622892af13"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab950fb990ea4a77d93ff24622892af13"·name="ab950fb990ea4a77d93ff24622892af13"></a>
164	constexpr·<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1align__cfg_1_1detail_1_1result__typ~~e~~.htm~~l"[·...·truncated·by·diffoscope;·len:·37,·SHA:·5~~fd6~~18c~~6f9e1~~fb~~9b9437~~23ea4~~a2e~~b5~~8de1c5d~~74~~a163~~24~~d0e68~~a3c~~ed13daeb2~~28·...·]</td></tr>	164	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el[·...·truncated·by·diffoscope;·len:·232,·SHA:·b751e1407f322cd8269a14576b5eba29017634ff052477943facdc57cc936f82·...·]</td></tr>
165	<tr·class="memdesc:ab950fb990ea4a77d93ff24622892af13"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	165	<tr·class="memdesc:ab950fb990ea4a77d93ff24622892af13"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
166	<tr·class="separator:ab950fb990ea4a77d93ff24622892af13"><td·class="memSeparator"·colspan="2"> </td></tr>	166	<tr·class="separator:ab950fb990ea4a77d93ff24622892af13"><td·class="memSeparator"·colspan="2"> </td></tr>
167	<tr·class="memitem:a7cea5f166b1e04949c974a46190d73c1"·id="r_a7cea5f166b1e04949c974a46190d73c1"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a7cea5f166b1e04949c974a46190d73c1"·name="a7cea5f166b1e04949c974a46190d73c1"></a>	167	<tr·class="memitem:a7cea5f166b1e04949c974a46190d73c1"·id="r_a7cea5f166b1e04949c974a46190d73c1"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a7cea5f166b1e04949c974a46190d73c1"·name="a7cea5f166b1e04949c974a46190d73c1"></a>
168	constexpr·<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1align__cfg_1_1detail_1_1result__typ~~e~~.htm~~l"[·...·truncated·by·diffoscope;·len:·36,·SHA:·726~~5b1~~4f~~477c296~~2491~~f52d0a666~~9c426230~~01db54f6ed1~~6~~e012~~f4b~~26c~~6f914a·...·]</td></tr>	168	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1align__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el[·...·truncated·by·diffoscope;·len:·166,·SHA:·560ca42ffc81a585244810a1383cf8a9204b25f2342597d58a266a9e4fb37985·...·]</td></tr>
169	<tr·class="memdesc:a7cea5f166b1e04949c974a46190d73c1"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	169	<tr·class="memdesc:a7cea5f166b1e04949c974a46190d73c1"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
170	<tr·class="separator:a7cea5f166b1e04949c974a46190d73c1"><td·class="memSeparator"·colspan="2"> </td></tr>	170	<tr·class="separator:a7cea5f166b1e04949c974a46190d73c1"><td·class="memSeparator"·colspan="2"> </td></tr>
171	<tr·class="memitem:abd1acd1008125ffce893dbb8b2c08821"·id="r_abd1acd1008125ffce893dbb8b2c08821"><td·class="memItemLeft"·align="right"·valign="top"><a·id="abd1acd1008125ffce893dbb8b2c08821"·name="abd1acd1008125ffce893dbb8b2c08821"></a>	171	<tr·class="memitem:abd1acd1008125ffce893dbb8b2c08821"·id="r_abd1acd1008125ffce893dbb8b2c08821"><td·class="memItemLeft"·align="right"·valign="top"><a·id="abd1acd1008125ffce893dbb8b2c08821"·name="abd1acd1008125ffce893dbb8b2c08821"></a>
172	</td><td·class="memItemRight"·valign="bottom"><b>~result_type</b>·()=default</td></tr>	172	</td><td·class="memItemRight"·valign="bottom"><b>~result_type</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
173	<tr·class="memdesc:abd1acd1008125ffce893dbb8b2c08821"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	173	<tr·class="memdesc:abd1acd1008125ffce893dbb8b2c08821"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
174	<tr·class="separator:abd1acd1008125ffce893dbb8b2c08821"><td·class="memSeparator"·colspan="2"> </td></tr>	174	<tr·class="separator:abd1acd1008125ffce893dbb8b2c08821"><td·class="memSeparator"·colspan="2"> </td></tr>
175	</table><table·class="memberdecls">	175	</table><table·class="memberdecls">
176	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-static-attribs"·name="pub-static-attribs"></a>	176	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-static-attribs"·name="pub-static-attribs"></a>
177	Static·Public·Attributes</h2></td></tr>	177	Static·Public·Attributes</h2></td></tr>
178	<tr·class="memitem:a04f1ac4caf48d0cfd74bc9b7a166aeb3"·id="r_a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a04f1ac4caf48d0cfd74bc9b7a166aeb3"·name="a04f1ac4caf48d0cfd74bc9b7a166aeb3"></a>	178	<tr·class="memitem:a04f1ac4caf48d0cfd74bc9b7a166aeb3"·id="r_a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a04f1ac4caf48d0cfd74bc9b7a166aeb3"·name="a04f1ac4caf48d0cfd74bc9b7a166aeb3"></a>
179	static·constexpr·seqan3::detail::align_config_id </td><td·class="memItemRight"·valign="bottom"><b>id</b>·{seqan3::detail::align_config_id::result_type}</td></tr>	179	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·seqan3::detail::align_config_id </td><td·class="memItemRight"·valign="bottom"><b>id</b>·{seqan3::detail::align_config_id::result_type}</td></tr>
180	<tr·class="memdesc:a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="mdescLeft"> </td><td·class="mdescRight">Internal·id·to·check·for·consistent·configuration·settings.·<br·/></td></tr>	180	<tr·class="memdesc:a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="mdescLeft"> </td><td·class="mdescRight">Internal·id·to·check·for·consistent·configuration·settings.·<br·/></td></tr>
181	<tr·class="separator:a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="memSeparator"·colspan="2"> </td></tr>	181	<tr·class="separator:a04f1ac4caf48d0cfd74bc9b7a166aeb3"><td·class="memSeparator"·colspan="2"> </td></tr>
182	</table>	182	</table>
183	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	183	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
184	<div·class="textblock"><div·class="compoundTemplParams">template<typename·alignment_result_t><br·/>	184	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·alignment_result_t><br·/>
185	requires·seqan3::detail::is_type_specialisation_of_v<alignment_result_t,·<a·class="el"·href="classseqan3_1_1alignment__result.html">seqan3::alignment_result</a>><br·/>	185	requires·seqan3::detail::is_type_specialisation_of_v<alignment_result_t,·<a·class="el"·href="classseqan3_1_1alignment__result.html">seqan3::alignment_result</a>><br·/>
186	class·seqan3::align_cfg::detail::result_type<·alignment_result_t·></div><p>Configuration·element·capturing·the·configured·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>·for·the·alignment·algorithm.·</p>	186	class·seqan3::align_cfg::detail::result_type<·alignment_result_t·></div><p>Configuration·element·capturing·the·configured·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>·for·the·alignment·algorithm.·</p>
187	<dl·class="tparams"><dt>Template·Parameters</dt><dd>	187	<dl·class="tparams"><dt>Template·Parameters</dt><dd>
188	··<table·class="tparams">	188	··<table·class="tparams">
189	····<tr><td·class="paramname">alignment_result_t</td><td>The·alignment·result·type·to·capture;·must·be·a·type·specialisation·of·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>.</td></tr>	189	····<tr><td·class="paramname">alignment_result_t</td><td>The·alignment·result·type·to·capture;·must·be·a·type·specialisation·of·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>.</td></tr>
190	··</table>	190	··</table>
191	··</dd>	191	··</dd>


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136	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1align__cfg_1_1output__alignment__inherit__graph.svg"·width="190"·height="139"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>	136	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1align__cfg_1_1output__alignment__inherit__graph.svg"·width="190"·height="139"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
137	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>	137	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>
138	<table·class="memberdecls">	138	<table·class="memberdecls">
139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
140	Public·Member·Functions</h2></td></tr>	140	Public·Member·Functions</h2></td></tr>
141	<tr><td·colspan="2"><div·class="groupHeader">Constructor,·destructor·and·assignment</div></td></tr>	141	<tr><td·colspan="2"><div·class="groupHeader">Constructor,·destructor·and·assignment</div></td></tr>
142	<tr·class="memitem:a5569fd975b4843525a85a4227ab3f8b4"·id="r_a5569fd975b4843525a85a4227ab3f8b4"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a5569fd975b4843525a85a4227ab3f8b4"·name="a5569fd975b4843525a85a4227ab3f8b4"></a>	142	<tr·class="memitem:a5569fd975b4843525a85a4227ab3f8b4"·id="r_a5569fd975b4843525a85a4227ab3f8b4"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a5569fd975b4843525a85a4227ab3f8b4"·name="a5569fd975b4843525a85a4227ab3f8b4"></a>
143	constexpr </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·()=default</td></tr>	143	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
144	<tr·class="memdesc:a5569fd975b4843525a85a4227ab3f8b4"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	144	<tr·class="memdesc:a5569fd975b4843525a85a4227ab3f8b4"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
145	<tr·class="separator:a5569fd975b4843525a85a4227ab3f8b4"><td·class="memSeparator"·colspan="2"> </td></tr>	145	<tr·class="separator:a5569fd975b4843525a85a4227ab3f8b4"><td·class="memSeparator"·colspan="2"> </td></tr>
146	<tr·class="memitem:ab7aa49b650230eaaba244996358181cb"·id="r_ab7aa49b650230eaaba244996358181cb"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab7aa49b650230eaaba244996358181cb"·name="ab7aa49b650230eaaba244996358181cb"></a>	146	<tr·class="memitem:ab7aa49b650230eaaba244996358181cb"·id="r_ab7aa49b650230eaaba244996358181cb"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab7aa49b650230eaaba244996358181cb"·name="ab7aa49b650230eaaba244996358181cb"></a>
147	constexpr </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·const·~~&am~~p;)=defa~~ult~~</td></tr>	147	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·<a·class="e[·...·truncated·by·diffoscope;·len:·139,·SHA:·5d7240bd21bb0d6345fd6686741cc020135dafa6c9a76742d51ec22c334839cb·...·]</td></tr>
148	<tr·class="memdesc:ab7aa49b650230eaaba244996358181cb"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	148	<tr·class="memdesc:ab7aa49b650230eaaba244996358181cb"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
149	<tr·class="separator:ab7aa49b650230eaaba244996358181cb"><td·class="memSeparator"·colspan="2"> </td></tr>	149	<tr·class="separator:ab7aa49b650230eaaba244996358181cb"><td·class="memSeparator"·colspan="2"> </td></tr>
150	<tr·class="memitem:aeadd74882774080115691e3c2049e010"·id="r_aeadd74882774080115691e3c2049e010"><td·class="memItemLeft"·align="right"·valign="top"><a·id="aeadd74882774080115691e3c2049e010"·name="aeadd74882774080115691e3c2049e010"></a>	150	<tr·class="memitem:aeadd74882774080115691e3c2049e010"·id="r_aeadd74882774080115691e3c2049e010"><td·class="memItemLeft"·align="right"·valign="top"><a·id="aeadd74882774080115691e3c2049e010"·name="aeadd74882774080115691e3c2049e010"></a>
151	constexpr </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·&&)=defa~~ult~~</td></tr>	151	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>output_alignment</b>·(<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·&&)[·...·truncated·by·diffoscope;·len:·73,·SHA:·2124e277d36f3991aaff7addc5ed31caa154a951a6dae7a1fabbea94b7b66b49·...·]</td></tr>
152	<tr·class="memdesc:aeadd74882774080115691e3c2049e010"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	152	<tr·class="memdesc:aeadd74882774080115691e3c2049e010"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
153	<tr·class="separator:aeadd74882774080115691e3c2049e010"><td·class="memSeparator"·colspan="2"> </td></tr>	153	<tr·class="separator:aeadd74882774080115691e3c2049e010"><td·class="memSeparator"·colspan="2"> </td></tr>
154	<tr·class="memitem:a48e08e226a8e5e4267a1607a3c59657b"·id="r_a48e08e226a8e5e4267a1607a3c59657b"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a48e08e226a8e5e4267a1607a3c59657b"·name="a48e08e226a8e5e4267a1607a3c59657b"></a>	154	<tr·class="memitem:a48e08e226a8e5e4267a1607a3c59657b"·id="r_a48e08e226a8e5e4267a1607a3c59657b"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a48e08e226a8e5e4267a1607a3c59657b"·name="a48e08e226a8e5e4267a1607a3c59657b"></a>
155	constexpr·<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1align__cfg_1_1output__alignm~~e~~nt.htm~~l~~">outp~~[·...·truncated·by·diffoscope;·len:·37,·SHA:·~~ece197~~05~~421e997b~~47d~~02d97612c75~~b~~53bbd9e~~8837c55ca17~~c42cc2cf815~~3~~dfd~~·...·]</td></tr>	155	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el[·...·truncated·by·diffoscope;·len:·232,·SHA:·9f59d20559c465c34d351ee583848b76403451186a74953178e63546753f3057·...·]</td></tr>
156	<tr·class="memdesc:a48e08e226a8e5e4267a1607a3c59657b"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	156	<tr·class="memdesc:a48e08e226a8e5e4267a1607a3c59657b"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
157	<tr·class="separator:a48e08e226a8e5e4267a1607a3c59657b"><td·class="memSeparator"·colspan="2"> </td></tr>	157	<tr·class="separator:a48e08e226a8e5e4267a1607a3c59657b"><td·class="memSeparator"·colspan="2"> </td></tr>
158	<tr·class="memitem:ab2b10832b5b3763a2e4d766da6d0925e"·id="r_ab2b10832b5b3763a2e4d766da6d0925e"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab2b10832b5b3763a2e4d766da6d0925e"·name="ab2b10832b5b3763a2e4d766da6d0925e"></a>	158	<tr·class="memitem:ab2b10832b5b3763a2e4d766da6d0925e"·id="r_ab2b10832b5b3763a2e4d766da6d0925e"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ab2b10832b5b3763a2e4d766da6d0925e"·name="ab2b10832b5b3763a2e4d766da6d0925e"></a>
159	constexpr·<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1align__cfg_1_1output__alignm~~e~~nt.htm~~l~~">outp~~[·...·truncated·by·diffoscope;·len:·36,·SHA:·2d5~~ff02d879~~ea2a309~~d58~~149a6a93~~4435592b55~~05d~~0af2~~e09b783~~5b592d999f7~~·...·]</td></tr>	159	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">output_alignment</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el[·...·truncated·by·diffoscope;·len:·166,·SHA:·1a195d6bf74a3ede2e353e1d9213d1ccdd786d0fd276ced5feb7397e5bb01809·...·]</td></tr>
160	<tr·class="memdesc:ab2b10832b5b3763a2e4d766da6d0925e"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	160	<tr·class="memdesc:ab2b10832b5b3763a2e4d766da6d0925e"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
161	<tr·class="separator:ab2b10832b5b3763a2e4d766da6d0925e"><td·class="memSeparator"·colspan="2"> </td></tr>	161	<tr·class="separator:ab2b10832b5b3763a2e4d766da6d0925e"><td·class="memSeparator"·colspan="2"> </td></tr>
162	<tr·class="memitem:a3f1150d717b09c04ec17f11f85372d92"·id="r_a3f1150d717b09c04ec17f11f85372d92"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3f1150d717b09c04ec17f11f85372d92"·name="a3f1150d717b09c04ec17f11f85372d92"></a>	162	<tr·class="memitem:a3f1150d717b09c04ec17f11f85372d92"·id="r_a3f1150d717b09c04ec17f11f85372d92"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3f1150d717b09c04ec17f11f85372d92"·name="a3f1150d717b09c04ec17f11f85372d92"></a>
163	</td><td·class="memItemRight"·valign="bottom"><b>~output_alignment</b>·()=default</td></tr>	163	</td><td·class="memItemRight"·valign="bottom"><b>~output_alignment</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
164	<tr·class="memdesc:a3f1150d717b09c04ec17f11f85372d92"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	164	<tr·class="memdesc:a3f1150d717b09c04ec17f11f85372d92"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
165	<tr·class="separator:a3f1150d717b09c04ec17f11f85372d92"><td·class="memSeparator"·colspan="2"> </td></tr>	165	<tr·class="separator:a3f1150d717b09c04ec17f11f85372d92"><td·class="memSeparator"·colspan="2"> </td></tr>
166	</table>	166	</table>
167	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	167	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
168	<div·class="textblock"><p>Configures·the·alignment·result·to·output·the·alignment.·</p>	168	<div·class="textblock"><p>Configures·the·alignment·result·to·output·the·alignment.·</p>
169	<p>This·option·forces·the·alignment·to·compute·and·output·the·actual·aligned·sequences.</p>	169	<p>This·option·forces·the·alignment·to·compute·and·output·the·actual·aligned·sequences.</p>
170	<p>If·this·option·is·not·set·in·the·alignment·configuration,·accessing·the·alignment·via·the·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>·object·is·forbidden·and·will·lead·to·a·compile·time·error.</p>	170	<p>If·this·option·is·not·set·in·the·alignment·configuration,·accessing·the·alignment·via·the·<a·class="el"·href="classseqan3_1_1alignment__result.html"·title="Stores·the·alignment·results·and·gives·access·to·score,·alignment·and·the·front·and·end·positions.">seqan3::alignment_result</a>·object·is·forbidden·and·will·lead·to·a·compile·time·error.</p>
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174	<div·class="line"><span·class="comment">//·SPDX-License-Identifier:·CC0-1.0</span></div>	174	<div·class="line"><span·class="comment">//·SPDX-License-Identifier:·CC0-1.0</span></div>
175	<div·class="line">·</div>	175	<div·class="line">·</div>
176	<div·class="line"><span·class="preprocessor">#include·<<a·class="code"·href="align__config__output_8hpp.html">seqan3/alignment/configuration/align_config_output.hpp</a>></span></div>	176	<div·class="line"><span·class="preprocessor">#include·<<a·class="code"·href="align__config__output_8hpp.html">seqan3/alignment/configuration/align_config_output.hpp</a>></span></div>
177	<div·class="line">·</div>	177	<div·class="line">·</div>
178	<div·class="line"><span·class="keywordtype">int</span>·main()</div>	178	<div·class="line"><span·class="keywordtype">int</span>·main()</div>
179	<div·class="line">{</div>	179	<div·class="line">{</div>
180	<div·class="line">····<span·class="comment">//·Compute·only·the·alignment.</span></div>	180	<div·class="line">····<span·class="comment">//·Compute·only·the·alignment.</span></div>
181	<div·class="line">····<a·class="code·hl_class"·href="classseqan3_1_1configuration.html">seqan3::configuration</a>·cfg·=·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">seqan3::align_cfg::output_alignment</a>{};</div>	181	<div·class="line">····<a·class="code·hl_class"·href="classseqan3_1_1configuration.html">seqan3::configuration</a>·<a·class="code·hl_class"·href="classseqan3_1_1debug__stream__type.html">cfg</a>·=·<a·class="code·hl_class"·href="classseqan3_1_1align__cfg_1_1output__alignment.html">seqan3::align_cfg::output_alignment</a>{};</div>
182	<div·class="line">}</div>	182	<div·class="line">}</div>
183	<div·class="ttc"·id="aalign__config__output_8hpp_html"><div·class="ttname"><a·href="align__config__output_8hpp.html">align_config_output.hpp</a></div><div·class="ttdoc">Provides·configuration·for·alignment·output.</div></div>	183	<div·class="ttc"·id="aalign__config__output_8hpp_html"><div·class="ttname"><a·href="align__config__output_8hpp.html">align_config_output.hpp</a></div><div·class="ttdoc">Provides·configuration·for·alignment·output.</div></div>
184	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1output__alignment_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1output__alignment.html">seqan3::align_cfg::output_alignment</a></div><div·class="ttdoc">Configures·the·alignment·result·to·output·the·alignment.</div><div·class="ttdef"><b>Definition</b>·align_config_output.hpp:168</div></div>	184	<div·class="ttc"·id="aclassseqan3_1_1align__cfg_1_1output__alignment_html"><div·class="ttname"><a·href="classseqan3_1_1align__cfg_1_1output__alignment.html">seqan3::align_cfg::output_alignment</a></div><div·class="ttdoc">Configures·the·alignment·result·to·output·the·alignment.</div><div·class="ttdef"><b>Definition</b>·align_config_output.hpp:168</div></div>
185	<div·class="ttc"·id="aclassseqan3_1_1configuration_html"><div·class="ttname"><a·href="classseqan3_1_1configuration.html">seqan3::configuration</a></div><div·class="ttdoc">Collection·of·elements·to·configure·an·algorithm.</div><div·class="ttdef"><b>Definition</b>·configuration.hpp:42</div></div>	185	<div·class="ttc"·id="aclassseqan3_1_1configuration_html"><div·class="ttname"><a·href="classseqan3_1_1configuration.html">seqan3::configuration</a></div><div·class="ttdoc">Collection·of·elements·to·configure·an·algorithm.</div><div·class="ttdef"><b>Definition</b>·configuration.hpp:42</div></div>
		186	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html">seqan3::debug_stream_type</a></div><div·class="ttdoc">A·"pretty·printer"·for·most·SeqAn·data·structures·and·related·types.</div><div·class="ttdef"><b>Definition</b>·debug_stream_type.hpp:79</div></div>
186	</div><!--·fragment·--><dl·class="section·see"><dt>See·also</dt><dd><a·class="el"·href="classseqan3_1_1align__cfg_1_1output__score.html"·title="Configures·the·alignment·result·to·output·the·score.">seqan3::align_cfg::output_score</a>·</dd>	187	</div><!--·fragment·--><dl·class="section·see"><dt>See·also</dt><dd><a·class="el"·href="classseqan3_1_1align__cfg_1_1output__score.html"·title="Configures·the·alignment·result·to·output·the·score.">seqan3::align_cfg::output_score</a>·</dd>
187	<dd>	188	<dd>
188	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__end__position.html"·title="Configures·the·alignment·result·to·output·the·end·position.">seqan3::align_cfg::output_end_position</a>·</dd>	189	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__end__position.html"·title="Configures·the·alignment·result·to·output·the·end·position.">seqan3::align_cfg::output_end_position</a>·</dd>
189	<dd>	190	<dd>
190	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__begin__position.html"·title="Configures·the·alignment·result·to·output·the·begin·positions.">seqan3::align_cfg::output_begin_position</a>·</dd>	191	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__begin__position.html"·title="Configures·the·alignment·result·to·output·the·begin·positions.">seqan3::align_cfg::output_begin_position</a>·</dd>
191	<dd>	192	<dd>
192	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__sequence1__id.html"·title="Configures·the·alignment·result·to·output·the·id·of·the·first·sequence.">seqan3::align_cfg::output_sequence1_id</a>·</dd>	193	<a·class="el"·href="classseqan3_1_1align__cfg_1_1output__sequence1__id.html"·title="Configures·the·alignment·result·to·output·the·id·of·the·first·sequence.">seqan3::align_cfg::output_sequence1_id</a>·</dd>


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137	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1argument__parser__error__inherit__graph.svg"·width="652"·height="443"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>	137	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1argument__parser__error__inherit__graph.svg"·width="652"·height="443"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
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139	<table·class="memberdecls">	139	<table·class="memberdecls">
140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
141	Public·Member·Functions</h2></td></tr>	141	Public·Member·Functions</h2></td></tr>
142	<tr·class="memitem:a1b799d8f109a8a93518f7b0bde155623"·id="r_a1b799d8f109a8a93518f7b0bde155623"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1argument__parser__error.html#a1b799d8f109a8a93518f7b0bde155623">argument_parser_error</a>·(<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·const·&s)</td></tr>	142	<tr·class="memitem:a1b799d8f109a8a93518f7b0bde155623"·id="r_a1b799d8f109a8a93518f7b0bde155623"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1argument__parser__error.html#a1b799d8f109a8a93518f7b0bde155623">argument_parser_error</a>·(<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·&s)</td></tr>
143	<tr·class="memdesc:a1b799d8f109a8a93518f7b0bde155623"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>	143	<tr·class="memdesc:a1b799d8f109a8a93518f7b0bde155623"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>
144	<tr·class="separator:a1b799d8f109a8a93518f7b0bde155623"><td·class="memSeparator"·colspan="2"> </td></tr>	144	<tr·class="separator:a1b799d8f109a8a93518f7b0bde155623"><td·class="memSeparator"·colspan="2"> </td></tr>
145	<tr·class="inherit_header·pub_methods_runtime_error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_runtime_error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·target="_blank"··href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></td></tr>	145	<tr·class="inherit_header·pub_methods_runtime_error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_runtime_error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·target="_blank"··href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></td></tr>
146	<tr·class="memitem:·inherit·pub_methods_runtime_error"><td·class="memItemLeft"·align="right"·valign="top">	146	<tr·class="memitem:·inherit·pub_methods_runtime_error"><td·class="memItemLeft"·align="right"·valign="top">
147	T </td><td·class="memItemRight"·valign="bottom"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>·(T...·args)</td></tr>	147	T </td><td·class="memItemRight"·valign="bottom"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>·(T...·args)</td></tr>
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176	········<tr>	176	········<tr>
177	··········<td·class="memname">seqan3::argument_parser_error::argument_parser_error·</td>	177	··········<td·class="memname">seqan3::argument_parser_error::argument_parser_error·</td>
178	··········<td>(</td>	178	··········<td>(</td>
179	··········<td·class="paramtype"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·const·& </td>	179	··········<td·class="paramtype"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
180	··········<td·class="paramname"><em>s</em></td><td>)</td>	180	··········<td·class="paramname"><em>s</em></td><td>)</td>
181	··········<td></td>	181	··········<td></td>
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138	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>	138	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>
139	<table·class="memberdecls">	139	<table·class="memberdecls">
140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
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143	<tr·class="memdesc:a946506ab1b1d3215ba7364b08b43d782"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>	143	<tr·class="memdesc:a946506ab1b1d3215ba7364b08b43d782"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>
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145	<tr·class="inherit_header·pub_methods_classseqan3_1_1argument__parser__error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_classseqan3_1_1argument__parser__error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·href="classseqan3_1_1argument__parser__error.html">seqan3::argument_parser_error</a></td></tr>	145	<tr·class="inherit_header·pub_methods_classseqan3_1_1argument__parser__error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_classseqan3_1_1argument__parser__error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·href="classseqan3_1_1argument__parser__error.html">seqan3::argument_parser_error</a></td></tr>
146	<tr·class="memitem:a1b799d8f109a8a93518f7b0bde155623·inherit·pub_methods_classseqan3_1_1argument__parser__error"·id="r_a1b799d8f109a8a93518f7b0bde155623"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1argument__parser__error.html#a1b799d8f109a8a93518f7b0bde155623">argument_parser_error</a>·(<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·const·&s)</td></tr>	146	<tr·class="memitem:a1b799d8f109a8a93518f7b0bde155623·inherit·pub_methods_classseqan3_1_1argument__parser__error"·id="r_a1b799d8f109a8a93518f7b0bde155623"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1argument__parser__error.html#a1b799d8f109a8a93518f7b0bde155623">argument_parser_error</a>·(<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·&s)</td></tr>
147	<tr·class="memdesc:a1b799d8f109a8a93518f7b0bde155623·inherit·pub_methods_classseqan3_1_1argument__parser__error"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>	147	<tr·class="memdesc:a1b799d8f109a8a93518f7b0bde155623·inherit·pub_methods_classseqan3_1_1argument__parser__error"><td·class="mdescLeft"> </td><td·class="mdescRight">The·constructor.··<br·/></td></tr>
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149	<tr·class="inherit_header·pub_methods_runtime_error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_runtime_error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·target="_blank"··href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></td></tr>	149	<tr·class="inherit_header·pub_methods_runtime_error"><td·colspan="2"·onclick="javascript:toggleInherit('pub_methods_runtime_error')"><img·src="closed.png"·alt="-"/> Public·Member·Functions·inherited·from·<a·class="el"·target="_blank"··href="https://en.cppreference.com/w/cpp/error/runtime_error.html">std::runtime_error</a></td></tr>
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151	T </td><td·class="memItemRight"·valign="bottom"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>·(T...·args)</td></tr>	151	T </td><td·class="memItemRight"·valign="bottom"><a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/error/runtime_error.html">runtime_error</a>·(T...·args)</td></tr>
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176	··········<td>(</td>	176	··········<td>(</td>
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178	··········<td·class="paramname"><em>s</em></td><td>)</td>	178	··········<td·class="paramname"><em>s</em></td><td>)</td>
179	··········<td></td>	179	··········<td></td>
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181	······</table>	181	······</table>
182	··</td>	182	··</td>
183	··<td·class="mlabels-right">	183	··<td·class="mlabels-right">
184	<span·class="mlabels"><span·class="mlabel">inline</span></span>··</td>	184	<span·class="mlabels"><span·class="mlabel">inline</span></span>··</td>


Offset 132, 91 lines modified		Offset 132, 91 lines modified
132	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>	132	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>
133	Related·Symbols</h2></td></tr>	133	Related·Symbols</h2></td></tr>
134	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>	134	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>
135	</td></tr>	135	</td></tr>
136	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sam_file_input_format</div></td></tr>	136	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sam_file_input_format</div></td></tr>
137	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sam__file__input__format.html"·title="The·generic·concept·for·alignment·file·input·formats.">seqan3::sam_file_input_format</a>.·</p>	137	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sam__file__input__format.html"·title="The·generic·concept·for·alignment·file·input·formats.">seqan3::sam_file_input_format</a>.·</p>
138	</div></td></tr>	138	</div></td></tr>
139	<tr·class="memitem:a983d20d88430e586555f2b138891e8a6"·id="r_a983d20d88430e586555f2b138891e8a6"><td·class="memItemLeft"·align="right"·valign="top">void </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sam__file__input__format.html#a983d20d88430e586555f2b138891e8a6">read_alignment_record</a>·(~~stream_type·&stream,·~~<a·cla~~ss="el"·href="struct~~s~~eqan3_1_1~~s~~am__file__i~~[·...·truncated·by·diffoscope;·len:·1474,·SHA:·~~fe50~~5b27~~b4c7cc53~~50~~92056b829127b2e~~feff4~~8290e86542~~1a57~~4b2~~8f8d~~31791~~·...·]·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a6ab172ad8ebe865618fe1dcf7412d9d5">bit_score</a>)</td></tr>	139	<tr·class="memitem:a983d20d88430e586555f2b138891e8a6"·id="r_a983d20d88430e586555f2b138891e8a6"><td·class="memItemLeft"·align="right"·valign="top"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sam__file__input__format.html#a983d20d88430e586555f2b138891e8a6">read_alignment_record</a>·(<a·class[·...·truncated·by·diffoscope;·len:·2449,·SHA:·0173857e7e9fbbba65e6cf4ecafd60439fe4e7084cda58168710a890abd5b3e4·...·]·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a6ab172ad8ebe865618fe1dcf7412d9d5">bit_score</a>)</td></tr>
140	<tr·class="memdesc:a983d20d88430e586555f2b138891e8a6"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>	140	<tr·class="memdesc:a983d20d88430e586555f2b138891e8a6"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>
141	<tr·class="separator:a983d20d88430e586555f2b138891e8a6"><td·class="memSeparator"·colspan="2"> </td></tr>	141	<tr·class="separator:a983d20d88430e586555f2b138891e8a6"><td·class="memSeparator"·colspan="2"> </td></tr>
142	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>	142	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>
143	static·inline·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>	143	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">inline</a>·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>
144	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>	144	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>
145	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>	145	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>
146	</table>	146	</table>
147	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	147	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
148	<div·class="textblock"><div·class="compoundTemplParams">template<typename·t><br·/>	148	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t><br·/>
149	interface·seqan3::sam_file_input_format<·t·></div><p>The·generic·concept·for·alignment·file·input·formats.·</p>	149	interface·seqan3::sam_file_input_format<·t·></div><p>The·generic·concept·for·alignment·file·input·formats.·</p>
150	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>	150	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>
151	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__sam__file.html">SAM·File</a>·</dd></dl>	151	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__sam__file.html">SAM·File</a>·</dd></dl>
152	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>	152	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>
153	<a·id="a983d20d88430e586555f2b138891e8a6"·name="a983d20d88430e586555f2b138891e8a6"></a>	153	<a·id="a983d20d88430e586555f2b138891e8a6"·name="a983d20d88430e586555f2b138891e8a6"></a>
154	<h2·class="memtitle"><span·class="permalink"><a·href="#a983d20d88430e586555f2b138891e8a6">◆ </a></span>read_alignment_record()</h2>	154	<h2·class="memtitle"><span·class="permalink"><a·href="#a983d20d88430e586555f2b138891e8a6">◆ </a></span>read_alignment_record()</h2>

155	<div·class="memitem">	155	<div·class="memitem">
156	<div·class="memproto">	156	<div·class="memproto">
157	<div·class="memtemplate">	157	<div·class="memtemplate">
158	template<typename·t·>·</div>	158	template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t·>·</div>
159	<table·class="mlabels">	159	<table·class="mlabels">
160	··<tr>	160	··<tr>
161	··<td·class="mlabels-left">	161	··<td·class="mlabels-left">
162	······<table·class="memname">	162	······<table·class="memname">
163	········<tr>	163	········<tr>
164	··········<td·class="memname">void·read_alignment_record·</td>	164	··········<td·class="memname"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a>·read_alignment_record·</td>
165	··········<td>(</td>	165	··········<td>(</td>
166	··········<td·class="paramtype">stream_type·& </td>	166	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_type</a>·& </td>
167	··········<td·class="paramname"><em>stream</em>,·</td>	167	··········<td·class="paramname"><em>stream</em>,·</td>
168	········</tr>	168	········</tr>
169	········<tr>	169	········<tr>
170	··········<td·class="paramkey"></td>	170	··········<td·class="paramkey"></td>
171	··········<td></td>	171	··········<td></td>
172	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sam__file__input__options.html">sam_file_input_options</a><·seq_legal_alph_type·>·const·& </td>	172	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sam__file__input__options.html">sam_file_input_options</a><·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">seq_legal_alph_type</a>·>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
173	··········<td·class="paramname"><em>options</em>,·</td>	173	··········<td·class="paramname"><em>options</em>,·</td>
174	········</tr>	174	········</tr>
175	········<tr>	175	········<tr>
176	··········<td·class="paramkey"></td>	176	··········<td·class="paramkey"></td>
177	··········<td></td>	177	··········<td></td>
178	··········<td·class="paramtype">ref_seqs_type·& </td>	178	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">ref_seqs_type</a>·& </td>
179	··········<td·class="paramname"><em>ref_seqs</em>,·</td>	179	··········<td·class="paramname"><em>ref_seqs</em>,·</td>
180	········</tr>	180	········</tr>
181	········<tr>	181	········<tr>
182	··········<td·class="paramkey"></td>	182	··········<td·class="paramkey"></td>
183	··········<td></td>	183	··········<td></td>
184	··········<td·class="paramtype">header_type·& </td>	184	··········<td·class="paramtype">header_type·& </td>
185	··········<td·class="paramname"><em>header</em>,·</td>	185	··········<td·class="paramname"><em>header</em>,·</td>
186	········</tr>	186	········</tr>
187	········<tr>	187	········<tr>
188	··········<td·class="paramkey"></td>	188	··········<td·class="paramkey"></td>
189	··········<td></td>	189	··········<td></td>
190	··········<td·class="paramtype">stream_pos_type·& </td>	190	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_pos_type</a>·& </td>
191	··········<td·class="paramname"><em>position_buffer</em>,·</td>	191	··········<td·class="paramname"><em>position_buffer</em>,·</td>
192	········</tr>	192	········</tr>
193	········<tr>	193	········<tr>
194	··········<td·class="paramkey"></td>	194	··········<td·class="paramkey"></td>
195	··········<td></td>	195	··········<td></td>
196	··········<td·class="paramtype">seq_type·& </td>	196	··········<td·class="paramtype">seq_type·& </td>
197	··········<td·class="paramname"><em>seq</em>,·</td>	197	··········<td·class="paramname"><em>seq</em>,·</td>
198	········</tr>	198	········</tr>
199	········<tr>	199	········<tr>
200	··········<td·class="paramkey"></td>	200	··········<td·class="paramkey"></td>
201	··········<td></td>	201	··········<td></td>
202	··········<td·class="paramtype">qual_type·& </td>	202	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">qual_type</a>·& </td>
203	··········<td·class="paramname"><em>qual</em>,·</td>	203	··········<td·class="paramname"><em>qual</em>,·</td>
204	········</tr>	204	········</tr>
205	········<tr>	205	········<tr>
206	··········<td·class="paramkey"></td>	206	··········<td·class="paramkey"></td>
207	··········<td></td>	207	··········<td></td>
208	··········<td·class="paramtype">id_type·& </td>	208	··········<td·class="paramtype">id_type·& </td>
209	··········<td·class="paramname"><em>id</em>,·</td>	209	··········<td·class="paramname"><em>id</em>,·</td>
210	········</tr>	210	········</tr>
211	········<tr>	211	········<tr>
212	··········<td·class="paramkey"></td>	212	··········<td·class="paramkey"></td>
213	··········<td></td>	213	··········<td></td>
214	··········<td·class="paramtype">ref_seq_type·& </td>	214	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">ref_seq_type</a>·& </td>
215	··········<td·class="paramname"><em>ref_seq</em>,·</td>	215	··········<td·class="paramname"><em>ref_seq</em>,·</td>
216	········</tr>	216	········</tr>
217	········<tr>	217	········<tr>
218	··········<td·class="paramkey"></td>	218	··········<td·class="paramkey"></td>
219	··········<td></td>	219	··········<td></td>
220	··········<td·class="paramtype">ref_id_type·& </td>	220	··········<td·class="paramtype">ref_id_type·& </td>
221	··········<td·class="paramname"><em>ref_id</em>,·</td>	221	··········<td·class="paramname"><em>ref_id</em>,·</td>
Offset 250, 27 lines modified		Offset 250, 27 lines modified
250	··········<td></td>	250	··········<td></td>
251	··········<td·class="paramtype">mate_type·& </td>	251	··········<td·class="paramtype">mate_type·& </td>
252	··········<td·class="paramname"><em>mate</em>,·</td>	252	··········<td·class="paramname"><em>mate</em>,·</td>
253	········</tr>	253	········</tr>
254	········<tr>	254	········<tr>
255	··········<td·class="paramkey"></td>	255	··········<td·class="paramkey"></td>
256	··········<td></td>	256	··········<td></td>
257	··········<td·class="paramtype">tag_dict_type·& </td>	257	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">tag_dict_type</a>·& </td>
258	··········<td·class="paramname"><em>tag_dict</em>,·</td>	258	··········<td·class="paramname"><em>tag_dict</em>,·</td>
259	········</tr>	259	········</tr>
260	········<tr>	260	········<tr>
261	··········<td·class="paramkey"></td>	261	··········<td·class="paramkey"></td>
262	··········<td></td>	262	··········<td></td>
263	··········<td·class="paramtype">e_value_type·& </td>	263	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">e_value_type</a>·& </td>
264	··········<td·class="paramname"><em>e_value</em>,·</td>	264	··········<td·class="paramname"><em>e_value</em>,·</td>
265	········</tr>	265	········</tr>
266	········<tr>	266	········<tr>
267	··········<td·class="paramkey"></td>	267	··········<td·class="paramkey"></td>
268	··········<td></td>	268	··········<td></td>
269	··········<td·class="paramtype">bit_score_type·& </td>	269	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">bit_score_type</a>·& </td>
270	··········<td·class="paramname"><em>bit_score</em> </td>	270	··········<td·class="paramname"><em>bit_score</em> </td>
271	········</tr>	271	········</tr>
272	········<tr>	272	········<tr>
273	··········<td></td>	273	··········<td></td>
274	··········<td>)</td>	274	··········<td>)</td>
275	··········<td></td><td></td>	275	··········<td></td><td></td>
276	········</tr>	276	········</tr>


Offset 132, 48 lines modified		Offset 132, 48 lines modified
132	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>	132	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>
133	Related·Symbols</h2></td></tr>	133	Related·Symbols</h2></td></tr>
134	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>	134	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>
135	</td></tr>	135	</td></tr>
136	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sam_file_output_format</div></td></tr>	136	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sam_file_output_format</div></td></tr>
137	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sam__file__output__format.html"·title="The·generic·concept·for·alignment·file·out·formats.">seqan3::sam_file_output_format</a>.·</p>	137	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sam__file__output__format.html"·title="The·generic·concept·for·alignment·file·out·formats.">seqan3::sam_file_output_format</a>.·</p>
138	</div></td></tr>	138	</div></td></tr>
139	<tr·class="memitem:a6b8a9f49dc2fc988f28c1d6a38359138"·id="r_a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="memItemLeft"·align="right"·valign="top">void </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sam__file__output__format.html#a6b8a9f49dc2fc988f28c1d6a38359138">write_alignment_record</a>·(~~stream_type·&stream,·~~<a·c~~lass="e~~l~~"·href="structseqan3_1_1s~~a~~m__file_~~[·...·truncated·by·diffoscope;·len:·~~1679~~,·SHA:·49~~e60~~d~~465f65~~1e41ef~~e8625~~4a9c75545ca2a~~b95d75~~36~~507c~~d0f~~07c~~1~~59c1~~837ff·...·]·&&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a6ab172ad8ebe865618fe1dcf7412d9d5">bit_score</a>)</td></tr>	139	<tr·class="memitem:a6b8a9f49dc2fc988f28c1d6a38359138"·id="r_a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="memItemLeft"·align="right"·valign="top"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sam__file__output__format.html#a6b8a9f49dc2fc988f28c1d6a38359138">write_alignment_record</a>·(<a·cla[·...·truncated·by·diffoscope;·len:·2394,·SHA:·97ccd8cac9d1314f3a0c94acab2eae8889c3e6831fd4f2251710bd8e7bc1fc8a·...·]·&&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a6ab172ad8ebe865618fe1dcf7412d9d5">bit_score</a>)</td></tr>
140	<tr·class="memdesc:a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="mdescLeft"> </td><td·class="mdescRight">Write·the·given·fields·to·the·specified·stream.··<br·/></td></tr>	140	<tr·class="memdesc:a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="mdescLeft"> </td><td·class="mdescRight">Write·the·given·fields·to·the·specified·stream.··<br·/></td></tr>
141	<tr·class="separator:a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="memSeparator"·colspan="2"> </td></tr>	141	<tr·class="separator:a6b8a9f49dc2fc988f28c1d6a38359138"><td·class="memSeparator"·colspan="2"> </td></tr>
142	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>	142	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>
143	static·inline·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>	143	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">inline</a>·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>
144	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>	144	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>
145	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>	145	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>
146	</table>	146	</table>
147	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	147	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
148	<div·class="textblock"><div·class="compoundTemplParams">template<typename·t><br·/>	148	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t><br·/>
149	interface·seqan3::sam_file_output_format<·t·></div><p>The·generic·concept·for·alignment·file·out·formats.·</p>	149	interface·seqan3::sam_file_output_format<·t·></div><p>The·generic·concept·for·alignment·file·out·formats.·</p>
150	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·model·this·concept·are·shown·as·"implementing·this·interface".·</p>	150	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·model·this·concept·are·shown·as·"implementing·this·interface".·</p>
151	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>	151	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>
152	<a·id="a6b8a9f49dc2fc988f28c1d6a38359138"·name="a6b8a9f49dc2fc988f28c1d6a38359138"></a>	152	<a·id="a6b8a9f49dc2fc988f28c1d6a38359138"·name="a6b8a9f49dc2fc988f28c1d6a38359138"></a>
153	<h2·class="memtitle"><span·class="permalink"><a·href="#a6b8a9f49dc2fc988f28c1d6a38359138">◆ </a></span>write_alignment_record()</h2>	153	<h2·class="memtitle"><span·class="permalink"><a·href="#a6b8a9f49dc2fc988f28c1d6a38359138">◆ </a></span>write_alignment_record()</h2>

154	<div·class="memitem">	154	<div·class="memitem">
155	<div·class="memproto">	155	<div·class="memproto">
156	<div·class="memtemplate">	156	<div·class="memtemplate">
157	template<typename·t·>·</div>	157	template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t·>·</div>
158	<table·class="mlabels">	158	<table·class="mlabels">
159	··<tr>	159	··<tr>
160	··<td·class="mlabels-left">	160	··<td·class="mlabels-left">
161	······<table·class="memname">	161	······<table·class="memname">
162	········<tr>	162	········<tr>
163	··········<td·class="memname">void·write_alignment_record·</td>	163	··········<td·class="memname"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a>·write_alignment_record·</td>
164	··········<td>(</td>	164	··········<td>(</td>
165	··········<td·class="paramtype">stream_type·& </td>	165	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_type</a>·& </td>
166	··········<td·class="paramname"><em>stream</em>,·</td>	166	··········<td·class="paramname"><em>stream</em>,·</td>
167	········</tr>	167	········</tr>
168	········<tr>	168	········<tr>
169	··········<td·class="paramkey"></td>	169	··········<td·class="paramkey"></td>
170	··········<td></td>	170	··········<td></td>
171	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sam__file__output__options.html">sam_file_output_options</a>·const·& </td>	171	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sam__file__output__options.html">sam_file_output_options</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
172	··········<td·class="paramname"><em>options</em>,·</td>	172	··········<td·class="paramname"><em>options</em>,·</td>
173	········</tr>	173	········</tr>
174	········<tr>	174	········<tr>
175	··········<td·class="paramkey"></td>	175	··········<td·class="paramkey"></td>
176	··········<td></td>	176	··········<td></td>
177	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1sam__file__header.html">sam_file_header</a><>·& </td>	177	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1sam__file__header.html">sam_file_header</a><>·& </td>
178	··········<td·class="paramname"><em>header</em>,·</td>	178	··········<td·class="paramname"><em>header</em>,·</td>
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183	··········<td></td>	183	··········<td></td>
184	··········<td·class="paramtype">seq_type·&& </td>	184	··········<td·class="paramtype">seq_type·&& </td>
185	··········<td·class="paramname"><em>seq</em>,·</td>	185	··········<td·class="paramname"><em>seq</em>,·</td>
186	········</tr>	186	········</tr>
187	········<tr>	187	········<tr>
188	··········<td·class="paramkey"></td>	188	··········<td·class="paramkey"></td>
189	··········<td></td>	189	··········<td></td>
190	··········<td·class="paramtype">qual_type·&& </td>	190	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">qual_type</a>·&& </td>
191	··········<td·class="paramname"><em>qual</em>,·</td>	191	··········<td·class="paramname"><em>qual</em>,·</td>
192	········</tr>	192	········</tr>
193	········<tr>	193	········<tr>
194	··········<td·class="paramkey"></td>	194	··········<td·class="paramkey"></td>
195	··········<td></td>	195	··········<td></td>
196	··········<td·class="paramtype">id_type·&& </td>	196	··········<td·class="paramtype">id_type·&& </td>
197	··········<td·class="paramname"><em>id</em>,·</td>	197	··········<td·class="paramname"><em>id</em>,·</td>
198	········</tr>	198	········</tr>
199	········<tr>	199	········<tr>
200	··········<td·class="paramkey"></td>	200	··········<td·class="paramkey"></td>
201	··········<td></td>	201	··········<td></td>
202	··········<td·class="paramtype">ref_seq_type·&& </td>	202	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">ref_seq_type</a>·&& </td>
203	··········<td·class="paramname"><em>ref_seq</em>,·</td>	203	··········<td·class="paramname"><em>ref_seq</em>,·</td>
204	········</tr>	204	········</tr>
205	········<tr>	205	········<tr>
206	··········<td·class="paramkey"></td>	206	··········<td·class="paramkey"></td>
207	··········<td></td>	207	··········<td></td>
208	··········<td·class="paramtype">ref_id_type·&& </td>	208	··········<td·class="paramtype">ref_id_type·&& </td>
209	··········<td·class="paramname"><em>ref_id</em>,·</td>	209	··········<td·class="paramname"><em>ref_id</em>,·</td>
Offset 237, 27 lines modified		Offset 237, 27 lines modified
237	··········<td></td>	237	··········<td></td>
238	··········<td·class="paramtype">mate_type·&& </td>	238	··········<td·class="paramtype">mate_type·&& </td>
239	··········<td·class="paramname"><em>mate</em>,·</td>	239	··········<td·class="paramname"><em>mate</em>,·</td>
240	········</tr>	240	········</tr>
241	········<tr>	241	········<tr>
242	··········<td·class="paramkey"></td>	242	··········<td·class="paramkey"></td>
243	··········<td></td>	243	··········<td></td>
244	··········<td·class="paramtype">tag_dict_type·&& </td>	244	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">tag_dict_type</a>·&& </td>
245	··········<td·class="paramname"><em>tag_dict</em>,·</td>	245	··········<td·class="paramname"><em>tag_dict</em>,·</td>
246	········</tr>	246	········</tr>
247	········<tr>	247	········<tr>
248	··········<td·class="paramkey"></td>	248	··········<td·class="paramkey"></td>
249	··········<td></td>	249	··········<td></td>
250	··········<td·class="paramtype">e_value_type·&& </td>	250	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">e_value_type</a>·&& </td>
251	··········<td·class="paramname"><em>e_value</em>,·</td>	251	··········<td·class="paramname"><em>e_value</em>,·</td>
252	········</tr>	252	········</tr>
253	········<tr>	253	········<tr>
254	··········<td·class="paramkey"></td>	254	··········<td·class="paramkey"></td>
255	··········<td></td>	255	··········<td></td>
256	··········<td·class="paramtype">bit_score_type·&& </td>	256	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">bit_score_type</a>·&& </td>
257	··········<td·class="paramname"><em>bit_score</em> </td>	257	··········<td·class="paramname"><em>bit_score</em> </td>
258	········</tr>	258	········</tr>
259	········<tr>	259	········<tr>
260	··········<td></td>	260	··········<td></td>
261	··········<td>)</td>	261	··········<td>)</td>
262	··········<td></td><td></td>	262	··········<td></td><td></td>
263	········</tr>	263	········</tr>


Offset 137, 56 lines modified		Offset 137, 56 lines modified
137	<div·id="dynsection-0-content"·class="dyncontent"·style="display:none;">	137	<div·id="dynsection-0-content"·class="dyncontent"·style="display:none;">
138	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1search__cfg_1_1detail_1_1result__type__inherit__graph.svg"·width="190"·height="154"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>	138	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1search__cfg_1_1detail_1_1result__type__inherit__graph.svg"·width="190"·height="154"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
139	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>	139	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>
140	<table·class="memberdecls">	140	<table·class="memberdecls">
141	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-types"·name="pub-types"></a>	141	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-types"·name="pub-types"></a>
142	Public·Types</h2></td></tr>	142	Public·Types</h2></td></tr>
143	<tr·class="memitem:af6c3558f6ed13596067286b9dc0d840a"·id="r_af6c3558f6ed13596067286b9dc0d840a"><td·class="memItemLeft"·align="right"·valign="top"><a·id="af6c3558f6ed13596067286b9dc0d840a"·name="af6c3558f6ed13596067286b9dc0d840a"></a>	143	<tr·class="memitem:af6c3558f6ed13596067286b9dc0d840a"·id="r_af6c3558f6ed13596067286b9dc0d840a"><td·class="memItemLeft"·align="right"·valign="top"><a·id="af6c3558f6ed13596067286b9dc0d840a"·name="af6c3558f6ed13596067286b9dc0d840a"></a>
144	using </td><td·class="memItemRight"·valign="bottom"><b>type</b>·=·search_result_t</td></tr>	144	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">using</a> </td><td·class="memItemRight"·valign="bottom"><b>type</b>·=·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">search_result_t</a></td></tr>
145	<tr·class="memdesc:af6c3558f6ed13596067286b9dc0d840a"><td·class="mdescLeft"> </td><td·class="mdescRight">The·configured·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>·type.·<br·/></td></tr>	145	<tr·class="memdesc:af6c3558f6ed13596067286b9dc0d840a"><td·class="mdescLeft"> </td><td·class="mdescRight">The·configured·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>·type.·<br·/></td></tr>
146	<tr·class="separator:af6c3558f6ed13596067286b9dc0d840a"><td·class="memSeparator"·colspan="2"> </td></tr>	146	<tr·class="separator:af6c3558f6ed13596067286b9dc0d840a"><td·class="memSeparator"·colspan="2"> </td></tr>
147	</table><table·class="memberdecls">	147	</table><table·class="memberdecls">
148	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	148	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
149	Public·Member·Functions</h2></td></tr>	149	Public·Member·Functions</h2></td></tr>
150	<tr><td·colspan="2"><div·class="groupHeader">Constructors,·destructor·and·assignment</div></td></tr>	150	<tr><td·colspan="2"><div·class="groupHeader">Constructors,·destructor·and·assignment</div></td></tr>
151	<tr·class="memitem:a76c91d676495a3497165e8a1f0758884"·id="r_a76c91d676495a3497165e8a1f0758884"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a76c91d676495a3497165e8a1f0758884"·name="a76c91d676495a3497165e8a1f0758884"></a>	151	<tr·class="memitem:a76c91d676495a3497165e8a1f0758884"·id="r_a76c91d676495a3497165e8a1f0758884"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a76c91d676495a3497165e8a1f0758884"·name="a76c91d676495a3497165e8a1f0758884"></a>
152	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·()=default</td></tr>	152	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
153	<tr·class="memdesc:a76c91d676495a3497165e8a1f0758884"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	153	<tr·class="memdesc:a76c91d676495a3497165e8a1f0758884"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
154	<tr·class="separator:a76c91d676495a3497165e8a1f0758884"><td·class="memSeparator"·colspan="2"> </td></tr>	154	<tr·class="separator:a76c91d676495a3497165e8a1f0758884"><td·class="memSeparator"·colspan="2"> </td></tr>
155	<tr·class="memitem:acc9b9ba0391c0a3c15c3d61ee42398de"·id="r_acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="memItemLeft"·align="right"·valign="top"><a·id="acc9b9ba0391c0a3c15c3d61ee42398de"·name="acc9b9ba0391c0a3c15c3d61ee42398de"></a>	155	<tr·class="memitem:acc9b9ba0391c0a3c15c3d61ee42398de"·id="r_acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="memItemLeft"·align="right"·valign="top"><a·id="acc9b9ba0391c0a3c15c3d61ee42398de"·name="acc9b9ba0391c0a3c15c3d61ee42398de"></a>
156	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·const·~~&am~~p;)=de~~fault~~</td></tr>	156	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·<a·class="el"·h[·...·truncated·by·diffoscope;·len:·135,·SHA:·41c3b95b1f3828523763624aa3afbc7d89a1728208d82ad83fb56d0e1ee4e99b·...·]</td></tr>
157	<tr·class="memdesc:acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	157	<tr·class="memdesc:acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
158	<tr·class="separator:acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="memSeparator"·colspan="2"> </td></tr>	158	<tr·class="separator:acc9b9ba0391c0a3c15c3d61ee42398de"><td·class="memSeparator"·colspan="2"> </td></tr>
159	<tr·class="memitem:a0df594291025d8c4770bac541ba277b2"·id="r_a0df594291025d8c4770bac541ba277b2"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a0df594291025d8c4770bac541ba277b2"·name="a0df594291025d8c4770bac541ba277b2"></a>	159	<tr·class="memitem:a0df594291025d8c4770bac541ba277b2"·id="r_a0df594291025d8c4770bac541ba277b2"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a0df594291025d8c4770bac541ba277b2"·name="a0df594291025d8c4770bac541ba277b2"></a>
160	constexpr </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·&&)=defa~~ult~~</td></tr>	160	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>result_type</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·&&)=<a·[·...·truncated·by·diffoscope;·len:·69,·SHA:·7f8323deee6e63119bf7bb699344c7210b36c8b930d4997129007fba87f6be12·...·]</td></tr>
161	<tr·class="memdesc:a0df594291025d8c4770bac541ba277b2"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	161	<tr·class="memdesc:a0df594291025d8c4770bac541ba277b2"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
162	<tr·class="separator:a0df594291025d8c4770bac541ba277b2"><td·class="memSeparator"·colspan="2"> </td></tr>	162	<tr·class="separator:a0df594291025d8c4770bac541ba277b2"><td·class="memSeparator"·colspan="2"> </td></tr>
163	<tr·class="memitem:a506aea43180b20492f56eb80d6de3633"·id="r_a506aea43180b20492f56eb80d6de3633"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a506aea43180b20492f56eb80d6de3633"·name="a506aea43180b20492f56eb80d6de3633"></a>	163	<tr·class="memitem:a506aea43180b20492f56eb80d6de3633"·id="r_a506aea43180b20492f56eb80d6de3633"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a506aea43180b20492f56eb80d6de3633"·name="a506aea43180b20492f56eb80d6de3633"></a>
164	constexpr·<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1search__cfg_1_1detail_1_1result__typ~~e~~.htm~~[·...·truncated·by·diffoscope;·len:·39,·SHA:·a2b9c~~3d89c9~~45827~~610f~~9b413~~0d885~~cbd9~~0a4e~~3c100f58e~~94eae9~~d~~4402~~5b6f51·...·]</td></tr>	164	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="e[·...·truncated·by·diffoscope;·len:·234,·SHA:·de4fe0bd5b00c65cdb804c8257da94c3b5cb973cadd944543c008f3878fd54ef·...·]</td></tr>
165	<tr·class="memdesc:a506aea43180b20492f56eb80d6de3633"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	165	<tr·class="memdesc:a506aea43180b20492f56eb80d6de3633"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
166	<tr·class="separator:a506aea43180b20492f56eb80d6de3633"><td·class="memSeparator"·colspan="2"> </td></tr>	166	<tr·class="separator:a506aea43180b20492f56eb80d6de3633"><td·class="memSeparator"·colspan="2"> </td></tr>
167	<tr·class="memitem:a3c6440dcdefb8f5ed776fe3618eb665b"·id="r_a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3c6440dcdefb8f5ed776fe3618eb665b"·name="a3c6440dcdefb8f5ed776fe3618eb665b"></a>	167	<tr·class="memitem:a3c6440dcdefb8f5ed776fe3618eb665b"·id="r_a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3c6440dcdefb8f5ed776fe3618eb665b"·name="a3c6440dcdefb8f5ed776fe3618eb665b"></a>
168	constexpr·<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class~~="el"·href~~="~~classseqan3_1_1search__cfg_1_1detail_1_1result__typ~~e~~.htm~~[·...·truncated·by·diffoscope;·len:·38,·SHA:·~~55cfdfa~~e19~~5f54~~0a38682~~a68~~c2d763~~10e14d4~~2d7~~f6e50c~~7f~~b3b2a7~~1~~7979~~603f3·...·]</td></tr>	168	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1search__cfg_1_1detail_1_1result__type.html">result_type</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="e[·...·truncated·by·diffoscope;·len:·168,·SHA:·a22b914e6e160868e24c4233c6d53324a022207deb6287fd96c9e1aaed68324d·...·]</td></tr>
169	<tr·class="memdesc:a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	169	<tr·class="memdesc:a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
170	<tr·class="separator:a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="memSeparator"·colspan="2"> </td></tr>	170	<tr·class="separator:a3c6440dcdefb8f5ed776fe3618eb665b"><td·class="memSeparator"·colspan="2"> </td></tr>
171	<tr·class="memitem:ae826fdf68cc93ee39317f76e5240cdda"·id="r_ae826fdf68cc93ee39317f76e5240cdda"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ae826fdf68cc93ee39317f76e5240cdda"·name="ae826fdf68cc93ee39317f76e5240cdda"></a>	171	<tr·class="memitem:ae826fdf68cc93ee39317f76e5240cdda"·id="r_ae826fdf68cc93ee39317f76e5240cdda"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ae826fdf68cc93ee39317f76e5240cdda"·name="ae826fdf68cc93ee39317f76e5240cdda"></a>
172	</td><td·class="memItemRight"·valign="bottom"><b>~result_type</b>·()=default</td></tr>	172	</td><td·class="memItemRight"·valign="bottom"><b>~result_type</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
173	<tr·class="memdesc:ae826fdf68cc93ee39317f76e5240cdda"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	173	<tr·class="memdesc:ae826fdf68cc93ee39317f76e5240cdda"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
174	<tr·class="separator:ae826fdf68cc93ee39317f76e5240cdda"><td·class="memSeparator"·colspan="2"> </td></tr>	174	<tr·class="separator:ae826fdf68cc93ee39317f76e5240cdda"><td·class="memSeparator"·colspan="2"> </td></tr>
175	</table><table·class="memberdecls">	175	</table><table·class="memberdecls">
176	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-static-attribs"·name="pub-static-attribs"></a>	176	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-static-attribs"·name="pub-static-attribs"></a>
177	Static·Public·Attributes</h2></td></tr>	177	Static·Public·Attributes</h2></td></tr>
178	<tr·class="memitem:ac11de943128e8525e78e1d96e4c44ed5"·id="r_ac11de943128e8525e78e1d96e4c44ed5"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ac11de943128e8525e78e1d96e4c44ed5"·name="ac11de943128e8525e78e1d96e4c44ed5"></a>	178	<tr·class="memitem:ac11de943128e8525e78e1d96e4c44ed5"·id="r_ac11de943128e8525e78e1d96e4c44ed5"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ac11de943128e8525e78e1d96e4c44ed5"·name="ac11de943128e8525e78e1d96e4c44ed5"></a>
179	static·constexpr·seqan3::detail::search_config_id </td><td·class="memItemRight"·valign="bottom"><b>id</b>·{seqan3::detail::search_config_id::result_type}</td></tr>	179	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·seqan3::detail::search_config_id </td><td·class="memItemRight"·valign="bottom"><b>id</b>·{seqan3::detail::search_config_id::result_type}</td></tr>
180	<tr·class="memdesc:ac11de943128e8525e78e1d96e4c44ed5"><td·class="mdescLeft"> </td><td·class="mdescRight">Internal·id·to·check·for·consistent·configuration·settings.·<br·/></td></tr>	180	<tr·class="memdesc:ac11de943128e8525e78e1d96e4c44ed5"><td·class="mdescLeft"> </td><td·class="mdescRight">Internal·id·to·check·for·consistent·configuration·settings.·<br·/></td></tr>
181	<tr·class="separator:ac11de943128e8525e78e1d96e4c44ed5"><td·class="memSeparator"·colspan="2"> </td></tr>	181	<tr·class="separator:ac11de943128e8525e78e1d96e4c44ed5"><td·class="memSeparator"·colspan="2"> </td></tr>
182	</table>	182	</table>
183	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	183	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
184	<div·class="textblock"><div·class="compoundTemplParams">template<typename·search_result_t><br·/>
185	~~require~~s·se~~qan3::~~d~~etai~~l~~::is_ty~~pe_specialis~~ation_o~~f~~_v&~~lt;sea~~rch~~_result_t,·<a·class="el"·href="classseqan3_1_1se~~arch~~__re~~sul~~t.html">search_result</a>><br·/>	184	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">search_result_t</a>><br·/>
		185	requires·seqan3::detail::is_type_specialisation_of_v<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">search_result_t</a>,·<a·class="el"·href="classseqan3_1_1search__result.html">search_result</a>><br·/>
186	class·seqan3::search_cfg::detail::result_type<·search_result_t·></div><p>Configuration·element·storing·the·configured·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>·for·the·search·algorithm.·</p>	186	class·seqan3::search_cfg::detail::result_type<·search_result_t·></div><p>Configuration·element·storing·the·configured·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>·for·the·search·algorithm.·</p>
187	<dl·class="section·see"><dt>See·also</dt><dd><a·class="el"·href="group__search__configuration.html"·title="Data·structures·and·utility·functions·for·configuring·search·algorithm.">Configuration</a>·</dd></dl>	187	<dl·class="section·see"><dt>See·also</dt><dd><a·class="el"·href="group__search__configuration.html"·title="Data·structures·and·utility·functions·for·configuring·search·algorithm.">Configuration</a>·</dd></dl>
188	<dl·class="tparams"><dt>Template·Parameters</dt><dd>	188	<dl·class="tparams"><dt>Template·Parameters</dt><dd>
189	··<table·class="tparams">	189	··<table·class="tparams">
190	····<tr><td·class="paramname">search_result_t</td><td>The·search·result·type·to·store;·must·be·a·type·specialisation·of·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>.</td></tr>	190	····<tr><td·class="paramname">search_result_t</td><td>The·search·result·type·to·store;·must·be·a·type·specialisation·of·<a·class="el"·href="classseqan3_1_1search__result.html"·title="The·result·class·generated·by·the·seqan3::seach·algorithm.">seqan3::search_result</a>.</td></tr>
191	··</table>	191	··</table>
192	··</dd>	192	··</dd>


Offset 137, 35 lines modified		Offset 137, 35 lines modified
137	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1search__cfg_1_1hit__strata__inherit__graph.svg"·width="190"·height="139"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>	137	<div·class="center"><iframe·scrolling="no"·frameborder="0"·src="classseqan3_1_1search__cfg_1_1hit__strata__inherit__graph.svg"·width="190"·height="139"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
138	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>	138	<center><span·class="legend">[<a·target="top"·href="graph_legend.html">legend</a>]</span></center></div>
139	<table·class="memberdecls">	139	<table·class="memberdecls">
140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>	140	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-methods"·name="pub-methods"></a>
141	Public·Member·Functions</h2></td></tr>	141	Public·Member·Functions</h2></td></tr>
142	<tr><td·colspan="2"><div·class="groupHeader">Constructors,·assignment·and·destructor</div></td></tr>	142	<tr><td·colspan="2"><div·class="groupHeader">Constructors,·assignment·and·destructor</div></td></tr>
143	<tr·class="memitem:a5538e6b447201036eb34e63a3c6bc0e8"·id="r_a5538e6b447201036eb34e63a3c6bc0e8"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a5538e6b447201036eb34e63a3c6bc0e8"·name="a5538e6b447201036eb34e63a3c6bc0e8"></a>	143	<tr·class="memitem:a5538e6b447201036eb34e63a3c6bc0e8"·id="r_a5538e6b447201036eb34e63a3c6bc0e8"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a5538e6b447201036eb34e63a3c6bc0e8"·name="a5538e6b447201036eb34e63a3c6bc0e8"></a>
144	constexpr </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·()=default</td></tr>	144	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
145	<tr·class="memdesc:a5538e6b447201036eb34e63a3c6bc0e8"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	145	<tr·class="memdesc:a5538e6b447201036eb34e63a3c6bc0e8"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
146	<tr·class="separator:a5538e6b447201036eb34e63a3c6bc0e8"><td·class="memSeparator"·colspan="2"> </td></tr>	146	<tr·class="separator:a5538e6b447201036eb34e63a3c6bc0e8"><td·class="memSeparator"·colspan="2"> </td></tr>
147	<tr·class="memitem:a00b0b7ed91a99ca57a8d3a0f9847f7af"·id="r_a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a00b0b7ed91a99ca57a8d3a0f9847f7af"·name="a00b0b7ed91a99ca57a8d3a0f9847f7af"></a>	147	<tr·class="memitem:a00b0b7ed91a99ca57a8d3a0f9847f7af"·id="r_a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a00b0b7ed91a99ca57a8d3a0f9847f7af"·name="a00b0b7ed91a99ca57a8d3a0f9847f7af"></a>
148	constexpr </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·const·~~&am~~p;)=defa~~ult~~</td></tr>	148	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·<a·class="el"·href="classseq[·...·truncated·by·diffoscope;·len:·122,·SHA:·1f9ed7ec0f818fcce0ce469cbde525982747cbff35b2971ce6bfaa0b1c7d62f8·...·]</td></tr>
149	<tr·class="memdesc:a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	149	<tr·class="memdesc:a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
150	<tr·class="separator:a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="memSeparator"·colspan="2"> </td></tr>	150	<tr·class="separator:a00b0b7ed91a99ca57a8d3a0f9847f7af"><td·class="memSeparator"·colspan="2"> </td></tr>
151	<tr·class="memitem:a04ef6bd17308db047070e434f15dc76f"·id="r_a04ef6bd17308db047070e434f15dc76f"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a04ef6bd17308db047070e434f15dc76f"·name="a04ef6bd17308db047070e434f15dc76f"></a>	151	<tr·class="memitem:a04ef6bd17308db047070e434f15dc76f"·id="r_a04ef6bd17308db047070e434f15dc76f"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a04ef6bd17308db047070e434f15dc76f"·name="a04ef6bd17308db047070e434f15dc76f"></a>
152	constexpr </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·&&)=defa~~ult~~</td></tr>	152	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a> </td><td·class="memItemRight"·valign="bottom"><b>hit_strata</b>·(<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·&&)=<a·class="el"·hr[·...·truncated·by·diffoscope;·len:·56,·SHA:·c540abbcb97fbead40e0c337d212e24961bdd308afacb1756d6a012ead275b9c·...·]</td></tr>
153	<tr·class="memdesc:a04ef6bd17308db047070e434f15dc76f"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	153	<tr·class="memdesc:a04ef6bd17308db047070e434f15dc76f"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
154	<tr·class="separator:a04ef6bd17308db047070e434f15dc76f"><td·class="memSeparator"·colspan="2"> </td></tr>	154	<tr·class="separator:a04ef6bd17308db047070e434f15dc76f"><td·class="memSeparator"·colspan="2"> </td></tr>
155	<tr·class="memitem:a3a053fb05a803be63c46799c80350b7d"·id="r_a3a053fb05a803be63c46799c80350b7d"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3a053fb05a803be63c46799c80350b7d"·name="a3a053fb05a803be63c46799c80350b7d"></a>	155	<tr·class="memitem:a3a053fb05a803be63c46799c80350b7d"·id="r_a3a053fb05a803be63c46799c80350b7d"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a3a053fb05a803be63c46799c80350b7d"·name="a3a053fb05a803be63c46799c80350b7d"></a>
156	constexpr·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el"·href="~~classseqan3_1_1search__~~c~~fg_1_1hit__strata.htm~~l~~">hit_strata</~~a~~>·const~~[·...·truncated·by·diffoscope;·len:·15,·SHA:·~~cae4~~b~~d50~~85928~~b8d118~~f~~4c0cc~~9d9~~c8fabf~~c~~cdd~~97~~0b76~~c5~~bfca~~c19~~9256947c3~~27·...·]</td></tr>	156	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el"·href="cla[·...·truncated·by·diffoscope;·len:·210,·SHA:·9bb8abe3f68afa28698364f8ef129db53440c0719a53fc87e6c2938912a10b29·...·]</td></tr>
157	<tr·class="memdesc:a3a053fb05a803be63c46799c80350b7d"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	157	<tr·class="memdesc:a3a053fb05a803be63c46799c80350b7d"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
158	<tr·class="separator:a3a053fb05a803be63c46799c80350b7d"><td·class="memSeparator"·colspan="2"> </td></tr>	158	<tr·class="separator:a3a053fb05a803be63c46799c80350b7d"><td·class="memSeparator"·colspan="2"> </td></tr>
159	<tr·class="memitem:a38791974ef3a3a14686a31f164e05a12"·id="r_a38791974ef3a3a14686a31f164e05a12"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a38791974ef3a3a14686a31f164e05a12"·name="a38791974ef3a3a14686a31f164e05a12"></a>	159	<tr·class="memitem:a38791974ef3a3a14686a31f164e05a12"·id="r_a38791974ef3a3a14686a31f164e05a12"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a38791974ef3a3a14686a31f164e05a12"·name="a38791974ef3a3a14686a31f164e05a12"></a>
160	constexpr·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el"·href="~~classseqan3_1_1search__~~c~~fg_1_1hit__strata.htm~~l~~">hit_strata</a>·&~~a~~mp;~~[·...·truncated·by·diffoscope;·len:·14,·SHA:·8163aa3~~b2c~~2~~92becab~~b5~~4824~~732ec1d2e8a44~~ed88~~ca~~b1454dc507222~~6~~a7af9fc~~·...·]</td></tr>	160	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">constexpr</a>·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html">hit_strata</a>·& </td><td·class="memItemRight"·valign="bottom"><b>operator=</b>·(<a·class="el"·href="cla[·...·truncated·by·diffoscope;·len:·144,·SHA:·bd3af81264d641eb5a6667312c19d60b68b5c40241cc2dfc9f99cc7b63994329·...·]</td></tr>
161	<tr·class="memdesc:a38791974ef3a3a14686a31f164e05a12"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	161	<tr·class="memdesc:a38791974ef3a3a14686a31f164e05a12"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
162	<tr·class="separator:a38791974ef3a3a14686a31f164e05a12"><td·class="memSeparator"·colspan="2"> </td></tr>	162	<tr·class="separator:a38791974ef3a3a14686a31f164e05a12"><td·class="memSeparator"·colspan="2"> </td></tr>
163	<tr·class="memitem:a6a63dd47eb1a02efd2a737576d9b7a50"·id="r_a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a6a63dd47eb1a02efd2a737576d9b7a50"·name="a6a63dd47eb1a02efd2a737576d9b7a50"></a>	163	<tr·class="memitem:a6a63dd47eb1a02efd2a737576d9b7a50"·id="r_a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="memItemLeft"·align="right"·valign="top"><a·id="a6a63dd47eb1a02efd2a737576d9b7a50"·name="a6a63dd47eb1a02efd2a737576d9b7a50"></a>
164	</td><td·class="memItemRight"·valign="bottom"><b>~hit_strata</b>·()=default</td></tr>	164	</td><td·class="memItemRight"·valign="bottom"><b>~hit_strata</b>·()=<a·class="el"·href="classseqan3_1_1debug__stream__type.html">default</a></td></tr>
165	<tr·class="memdesc:a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>	165	<tr·class="memdesc:a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="mdescLeft"> </td><td·class="mdescRight">Defaulted.·<br·/></td></tr>
166	<tr·class="separator:a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="memSeparator"·colspan="2"> </td></tr>	166	<tr·class="separator:a6a63dd47eb1a02efd2a737576d9b7a50"><td·class="memSeparator"·colspan="2"> </td></tr>
167	<tr·class="memitem:a9dcafd8eac62446f1658019dfb7380c6"·id="r_a9dcafd8eac62446f1658019dfb7380c6"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html#a9dcafd8eac62446f1658019dfb7380c6">hit_strata</a>·(uint32_t·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html#a3d5b1d25139259f371ffa9385d273ae7">stratum</a>)</td></tr>	167	<tr·class="memitem:a9dcafd8eac62446f1658019dfb7380c6"·id="r_a9dcafd8eac62446f1658019dfb7380c6"><td·class="memItemLeft"·align="right"·valign="top"> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html#a9dcafd8eac62446f1658019dfb7380c6">hit_strata</a>·(uint32_t·<a·class="el"·href="classseqan3_1_1search__cfg_1_1hit__strata.html#a3d5b1d25139259f371ffa9385d273ae7">stratum</a>)</td></tr>
168	<tr·class="memdesc:a9dcafd8eac62446f1658019dfb7380c6"><td·class="mdescLeft"> </td><td·class="mdescRight">Initialises·the·strata·config.··<br·/></td></tr>	168	<tr·class="memdesc:a9dcafd8eac62446f1658019dfb7380c6"><td·class="mdescLeft"> </td><td·class="mdescRight">Initialises·the·strata·config.··<br·/></td></tr>
169	<tr·class="separator:a9dcafd8eac62446f1658019dfb7380c6"><td·class="memSeparator"·colspan="2"> </td></tr>	169	<tr·class="separator:a9dcafd8eac62446f1658019dfb7380c6"><td·class="memSeparator"·colspan="2"> </td></tr>
170	</table><table·class="memberdecls">	170	</table><table·class="memberdecls">
171	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-attribs"·name="pub-attribs"></a>	171	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="pub-attribs"·name="pub-attribs"></a>


Offset 139, 55 lines modified		Offset 139, 55 lines modified
139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>	139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>
140	Related·Symbols</h2></td></tr>	140	Related·Symbols</h2></td></tr>
141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>	141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>
142	</td></tr>	142	</td></tr>
143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sequence_file_input_format</div></td></tr>	143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sequence_file_input_format</div></td></tr>
144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sequence__file__input__format.html"·title="The·generic·concept·for·sequence·file·in·formats.">seqan3::sequence_file_input_format</a>.·</p>	144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sequence__file__input__format.html"·title="The·generic·concept·for·sequence·file·in·formats.">seqan3::sequence_file_input_format</a>.·</p>
145	</div></td></tr>	145	</div></td></tr>
146	<tr·class="memitem:ab498cecfd10755118115502ada95379e"·id="r_ab498cecfd10755118115502ada95379e"><td·class="memItemLeft"·align="right"·valign="top">void </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sequence__file__input__format.html#ab498cecfd10755118115502ada95379e">read_sequence_record</a>·(~~stream_type·&stream,·~~<~~a·cl~~a~~ss="el"~~·~~href="structseqan3_1_1sequen~~ce[·...·truncated·by·diffoscope;·len:·359,·SHA:·e39e1~~cd2~~04d8bbe~~88d1~~5~~a66958188bde4~~f9d~~0396d184b~~74832~~0c489b~~6~~319~~4~~a7b~~·...·])</td></tr>	146	<tr·class="memitem:ab498cecfd10755118115502ada95379e"·id="r_ab498cecfd10755118115502ada95379e"><td·class="memItemLeft"·align="right"·valign="top"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sequence__file__input__format.html#ab498cecfd10755118115502ada95379e">read_sequence_record</a>·(<a·c[·...·truncated·by·diffoscope;·len:·749,·SHA:·4d11a60b87e1cef5f3e7cc9599e27f99da5da83c92ee758ff2c7c3a567af42e4·...·])</td></tr>
147	<tr·class="memdesc:ab498cecfd10755118115502ada95379e"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>	147	<tr·class="memdesc:ab498cecfd10755118115502ada95379e"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>
148	<tr·class="separator:ab498cecfd10755118115502ada95379e"><td·class="memSeparator"·colspan="2"> </td></tr>	148	<tr·class="separator:ab498cecfd10755118115502ada95379e"><td·class="memSeparator"·colspan="2"> </td></tr>
149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>	149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>
150	static·inline·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>	150	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">inline</a>·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>
151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>	151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>
152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>	152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>
153	</table>	153	</table>
154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
155	<div·class="textblock"><div·class="compoundTemplParams">template<typename·t><br·/>	155	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t><br·/>
156	interface·seqan3::sequence_file_input_format<·t·></div><p>The·generic·concept·for·sequence·file·in·formats.·</p>	156	interface·seqan3::sequence_file_input_format<·t·></div><p>The·generic·concept·for·sequence·file·in·formats.·</p>
157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>	157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>
158	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__sequence__file.html">Sequence·File</a>·</dd></dl>	158	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__sequence__file.html">Sequence·File</a>·</dd></dl>
159	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>	159	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>
160	<a·id="ab498cecfd10755118115502ada95379e"·name="ab498cecfd10755118115502ada95379e"></a>	160	<a·id="ab498cecfd10755118115502ada95379e"·name="ab498cecfd10755118115502ada95379e"></a>
161	<h2·class="memtitle"><span·class="permalink"><a·href="#ab498cecfd10755118115502ada95379e">◆ </a></span>read_sequence_record()</h2>	161	<h2·class="memtitle"><span·class="permalink"><a·href="#ab498cecfd10755118115502ada95379e">◆ </a></span>read_sequence_record()</h2>

162	<div·class="memitem">	162	<div·class="memitem">
163	<div·class="memproto">	163	<div·class="memproto">
164	<div·class="memtemplate">	164	<div·class="memtemplate">
165	template<typename·t·>·</div>	165	template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t·>·</div>
166	<table·class="mlabels">	166	<table·class="mlabels">
167	··<tr>	167	··<tr>
168	··<td·class="mlabels-left">	168	··<td·class="mlabels-left">
169	······<table·class="memname">	169	······<table·class="memname">
170	········<tr>	170	········<tr>
171	··········<td·class="memname">void·read_sequence_record·</td>	171	··········<td·class="memname"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a>·read_sequence_record·</td>
172	··········<td>(</td>	172	··········<td>(</td>
173	··········<td·class="paramtype">stream_type·& </td>	173	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_type</a>·& </td>
174	··········<td·class="paramname"><em>stream</em>,·</td>	174	··········<td·class="paramname"><em>stream</em>,·</td>
175	········</tr>	175	········</tr>
176	········<tr>	176	········<tr>
177	··········<td·class="paramkey"></td>	177	··········<td·class="paramkey"></td>
178	··········<td></td>	178	··········<td></td>
179	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sequence__file__input__options.html">seqan3::sequence_file_input_options</a>·const·& </td>	179	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sequence__file__input__options.html">seqan3::sequence_file_input_options</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
180	··········<td·class="paramname"><em>options</em>,·</td>	180	··········<td·class="paramname"><em>options</em>,·</td>
181	········</tr>	181	········</tr>
182	········<tr>	182	········<tr>
183	··········<td·class="paramkey"></td>	183	··········<td·class="paramkey"></td>
184	··········<td></td>	184	··········<td></td>
185	··········<td·class="paramtype">stream_pos_type·& </td>	185	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_pos_type</a>·& </td>
186	··········<td·class="paramname"><em>position_buffer</em>,·</td>	186	··········<td·class="paramname"><em>position_buffer</em>,·</td>
187	········</tr>	187	········</tr>
188	········<tr>	188	········<tr>
189	··········<td·class="paramkey"></td>	189	··········<td·class="paramkey"></td>
190	··········<td></td>	190	··········<td></td>
191	··········<td·class="paramtype">seq_type·& </td>	191	··········<td·class="paramtype">seq_type·& </td>
192	··········<td·class="paramname"><em>sequence</em>,·</td>	192	··········<td·class="paramname"><em>sequence</em>,·</td>
Offset 197, 15 lines modified		Offset 197, 15 lines modified
197	··········<td></td>	197	··········<td></td>
198	··········<td·class="paramtype">id_type·& </td>	198	··········<td·class="paramtype">id_type·& </td>
199	··········<td·class="paramname"><em>id</em>,·</td>	199	··········<td·class="paramname"><em>id</em>,·</td>
200	········</tr>	200	········</tr>
201	········<tr>	201	········<tr>
202	··········<td·class="paramkey"></td>	202	··········<td·class="paramkey"></td>
203	··········<td></td>	203	··········<td></td>
204	··········<td·class="paramtype">qual_type·& </td>	204	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">qual_type</a>·& </td>
205	··········<td·class="paramname"><em>qualities</em> </td>	205	··········<td·class="paramname"><em>qualities</em> </td>
206	········</tr>	206	········</tr>
207	········<tr>	207	········<tr>
208	··········<td></td>	208	··········<td></td>
209	··········<td>)</td>	209	··········<td>)</td>
210	··········<td></td><td></td>	210	··········<td></td><td></td>
211	········</tr>	211	········</tr>


Offset 139, 48 lines modified		Offset 139, 48 lines modified
139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>	139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>
140	Related·Symbols</h2></td></tr>	140	Related·Symbols</h2></td></tr>
141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>	141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>
142	</td></tr>	142	</td></tr>
143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sequence_file_output_format</div></td></tr>	143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::sequence_file_output_format</div></td></tr>
144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sequence__file__output__format.html"·title="The·generic·concept·for·sequence·file·out·formats.">seqan3::sequence_file_output_format</a>.·</p>	144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1sequence__file__output__format.html"·title="The·generic·concept·for·sequence·file·out·formats.">seqan3::sequence_file_output_format</a>.·</p>
145	</div></td></tr>	145	</div></td></tr>
146	<tr·class="memitem:a70f2a06f41c8c3f361ebec4d7671053d"·id="r_a70f2a06f41c8c3f361ebec4d7671053d"><td·class="memItemLeft"·align="right"·valign="top">void </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sequence__file__output__format.html#a70f2a06f41c8c3f361ebec4d7671053d">write_sequence_record</a>·(~~stream_type·&stream,·~~<~~a·class="el"·href="structseq~~a~~n3_1_1sequen~~[·...·truncated·by·diffoscope;·len:·~~340~~,·SHA:·de~~c9b0db6~~2b0~~9d37c6bde~~a503e72ab1f5~~9ddf819c675351a6~~f3~~773ad~~df961~~acd~~·...·])</td></tr>	146	<tr·class="memitem:a70f2a06f41c8c3f361ebec4d7671053d"·id="r_a70f2a06f41c8c3f361ebec4d7671053d"><td·class="memItemLeft"·align="right"·valign="top"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1sequence__file__output__format.html#a70f2a06f41c8c3f361ebec4d7671053d">write_sequence_record</a>·(<a[·...·truncated·by·diffoscope;·len:·665,·SHA:·d5d4eb3255f5225b0b28899cb5a09727cf6486ceaed8edffcbf30075cd0b67e2·...·])</td></tr>
147	<tr·class="memdesc:a70f2a06f41c8c3f361ebec4d7671053d"><td·class="mdescLeft"> </td><td·class="mdescRight">Write·the·given·fields·to·the·specified·stream.··<br·/></td></tr>	147	<tr·class="memdesc:a70f2a06f41c8c3f361ebec4d7671053d"><td·class="mdescLeft"> </td><td·class="mdescRight">Write·the·given·fields·to·the·specified·stream.··<br·/></td></tr>
148	<tr·class="separator:a70f2a06f41c8c3f361ebec4d7671053d"><td·class="memSeparator"·colspan="2"> </td></tr>	148	<tr·class="separator:a70f2a06f41c8c3f361ebec4d7671053d"><td·class="memSeparator"·colspan="2"> </td></tr>
149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>	149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>
150	static·inline·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>	150	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">inline</a>·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>
151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>	151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>
152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>	152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>
153	</table>	153	</table>
154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
155	<div·class="textblock"><div·class="compoundTemplParams">template<typename·t><br·/>	155	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t><br·/>
156	interface·seqan3::sequence_file_output_format<·t·></div><p>The·generic·concept·for·sequence·file·out·formats.·</p>	156	interface·seqan3::sequence_file_output_format<·t·></div><p>The·generic·concept·for·sequence·file·out·formats.·</p>
157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".·</p>	157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".·</p>
158	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>	158	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>
159	<a·id="a70f2a06f41c8c3f361ebec4d7671053d"·name="a70f2a06f41c8c3f361ebec4d7671053d"></a>	159	<a·id="a70f2a06f41c8c3f361ebec4d7671053d"·name="a70f2a06f41c8c3f361ebec4d7671053d"></a>
160	<h2·class="memtitle"><span·class="permalink"><a·href="#a70f2a06f41c8c3f361ebec4d7671053d">◆ </a></span>write_sequence_record()</h2>	160	<h2·class="memtitle"><span·class="permalink"><a·href="#a70f2a06f41c8c3f361ebec4d7671053d">◆ </a></span>write_sequence_record()</h2>

161	<div·class="memitem">	161	<div·class="memitem">
162	<div·class="memproto">	162	<div·class="memproto">
163	<div·class="memtemplate">	163	<div·class="memtemplate">
164	template<typename·t·>·</div>	164	template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t·>·</div>
165	<table·class="mlabels">	165	<table·class="mlabels">
166	··<tr>	166	··<tr>
167	··<td·class="mlabels-left">	167	··<td·class="mlabels-left">
168	······<table·class="memname">	168	······<table·class="memname">
169	········<tr>	169	········<tr>
170	··········<td·class="memname">void·write_sequence_record·</td>	170	··········<td·class="memname"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a>·write_sequence_record·</td>
171	··········<td>(</td>	171	··········<td>(</td>
172	··········<td·class="paramtype">stream_type·& </td>	172	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_type</a>·& </td>
173	··········<td·class="paramname"><em>stream</em>,·</td>	173	··········<td·class="paramname"><em>stream</em>,·</td>
174	········</tr>	174	········</tr>
175	········<tr>	175	········<tr>
176	··········<td·class="paramkey"></td>	176	··········<td·class="paramkey"></td>
177	··········<td></td>	177	··········<td></td>
178	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sequence__file__output__options.html">seqan3::sequence_file_output_options</a>·const·& </td>	178	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1sequence__file__output__options.html">seqan3::sequence_file_output_options</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
179	··········<td·class="paramname"><em>options</em>,·</td>	179	··········<td·class="paramname"><em>options</em>,·</td>
180	········</tr>	180	········</tr>
181	········<tr>	181	········<tr>
182	··········<td·class="paramkey"></td>	182	··········<td·class="paramkey"></td>
183	··········<td></td>	183	··········<td></td>
184	··········<td·class="paramtype">seq_type·&& </td>	184	··········<td·class="paramtype">seq_type·&& </td>
185	··········<td·class="paramname"><em>sequence</em>,·</td>	185	··········<td·class="paramname"><em>sequence</em>,·</td>
Offset 190, 15 lines modified		Offset 190, 15 lines modified
190	··········<td></td>	190	··········<td></td>
191	··········<td·class="paramtype">id_type·&& </td>	191	··········<td·class="paramtype">id_type·&& </td>
192	··········<td·class="paramname"><em>id</em>,·</td>	192	··········<td·class="paramname"><em>id</em>,·</td>
193	········</tr>	193	········</tr>
194	········<tr>	194	········<tr>
195	··········<td·class="paramkey"></td>	195	··········<td·class="paramkey"></td>
196	··········<td></td>	196	··········<td></td>
197	··········<td·class="paramtype">qual_type·&& </td>	197	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">qual_type</a>·&& </td>
198	··········<td·class="paramname"><em>qualities</em> </td>	198	··········<td·class="paramname"><em>qualities</em> </td>
199	········</tr>	199	········</tr>
200	········<tr>	200	········<tr>
201	··········<td></td>	201	··········<td></td>
202	··········<td>)</td>	202	··········<td>)</td>
203	··········<td></td><td></td>	203	··········<td></td><td></td>
204	········</tr>	204	········</tr>


Offset 139, 49 lines modified		Offset 139, 49 lines modified
139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>	139	<tr·class="heading"><td·colspan="2"><h2·class="groupheader"><a·id="related"·name="related"></a>
140	Related·Symbols</h2></td></tr>	140	Related·Symbols</h2></td></tr>
141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>	141	<tr><td·class="ititle"·colspan="2"><p>(Note·that·these·are·not·member·symbols.)·</p>
142	</td></tr>	142	</td></tr>
143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::structure_file_input_format</div></td></tr>	143	<tr><td·colspan="2"><div·class="groupHeader">Requirements·for·seqan3::structure_file_input_format</div></td></tr>
144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1structure__file__input__format.html"·title="The·generic·concept·for·structure·file·in·formats.">seqan3::structure_file_input_format</a>.·</p>	144	<tr><td·colspan="2"><div·class="groupText"><p>You·can·expect·these·<b>members</b>·on·all·types·that·implement·<a·class="el"·href="classseqan3_1_1structure__file__input__format.html"·title="The·generic·concept·for·structure·file·in·formats.">seqan3::structure_file_input_format</a>.·</p>
145	</div></td></tr>	145	</div></td></tr>
146	<tr·class="memitem:a6518905d15efa3b33c869a14d1508275"·id="r_a6518905d15efa3b33c869a14d1508275"><td·class="memItemLeft"·align="right"·valign="top">void </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1structure__file__input__format.html#a6518905d15efa3b33c869a14d1508275">read_structure_record</a>·(~~stream_type·&stream,·~~<~~a·class="el"·href="structseq~~a~~n3_1_1struct~~[·...·truncated·by·diffoscope;·len:·~~124~~,·SHA:·81a~~80d~~50~~cf7c2d1~~03~~ecc~~a5e5~~20267a~~bd85945~~2577~~4~~f1235e99435~~2~~61963efe76~~·...·]·&options,·seq_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>,·id_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ab80bb7740288fda1f201890375a60c8f">id</a>,·bpp_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a0c68c2daa0334704116676287d54c2ae">bpp</a>,·structure_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a07414f4e15ca943e6cde032dec85d92f">structure</a>,·energy_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a05e7d19a6d002118deef70d21ff4226e">energy</a>,·react_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a266a1f7c2e2345169d3bc448da45eae6">react</a>,·react_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a487bbc52602f558bf3bf5987b6474951">react_err</a>,·comment_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a06d4cd63bde972fc66a0aed41d2f5c51">comment</a>,·offset_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">offset</a>)</td></tr>	146	<tr·class="memitem:a6518905d15efa3b33c869a14d1508275"·id="r_a6518905d15efa3b33c869a14d1508275"><td·class="memItemLeft"·align="right"·valign="top"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a> </td><td·class="memItemRight"·valign="bottom"><a·class="el"·href="classseqan3_1_1structure__file__input__format.html#a6518905d15efa3b33c869a14d1508275">read_structure_record</a>·(<a[·...·truncated·by·diffoscope;·len:·449,·SHA:·5797a7b156454e030504a9754938d0b23d59dc964a08a62f48df2d75fb489254·...·]·&options,·seq_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ae068c2de26d760f20cf10afc4b87ef0f">seq</a>,·id_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817ab80bb7740288fda1f201890375a60c8f">id</a>,·bpp_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a0c68c2daa0334704116676287d54c2ae">bpp</a>,·structure_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a07414f4e15ca943e6cde032dec85d92f">structure</a>,·energy_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a05e7d19a6d002118deef70d21ff4226e">energy</a>,·react_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a266a1f7c2e2345169d3bc448da45eae6">react</a>,·react_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a487bbc52602f558bf3bf5987b6474951">react_err</a>,·comment_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a06d4cd63bde972fc66a0aed41d2f5c51">comment</a>,·offset_type·&<a·class="el"·href="group__io.html#gga2511b22375848e1bedbc5013c952a817a7a86c157ee9713c34fbd7a1ee40f0c5a">offset</a>)</td></tr>
147	<tr·class="memdesc:a6518905d15efa3b33c869a14d1508275"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>	147	<tr·class="memdesc:a6518905d15efa3b33c869a14d1508275"><td·class="mdescLeft"> </td><td·class="mdescRight">Read·from·the·specified·stream·and·back-insert·into·the·given·field·buffers.··<br·/></td></tr>
148	<tr·class="separator:a6518905d15efa3b33c869a14d1508275"><td·class="memSeparator"·colspan="2"> </td></tr>	148	<tr·class="separator:a6518905d15efa3b33c869a14d1508275"><td·class="memSeparator"·colspan="2"> </td></tr>
149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>	149	<tr·class="memitem:ad7a4548027a4ec0e55643ebe5bd100ac"·id="r_ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memItemLeft"·align="right"·valign="top"><a·id="ad7a4548027a4ec0e55643ebe5bd100ac"·name="ad7a4548027a4ec0e55643ebe5bd100ac"></a>
150	static·inline·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>	150	<a·class="el"·href="classseqan3_1_1debug__stream__type.html">static</a>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">inline</a>·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector</a><·<a·class="elRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·> </td><td·class="memItemRight"·valign="bottom"><b>file_extensions</b></td></tr>
151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>	151	<tr·class="memdesc:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="mdescLeft"> </td><td·class="mdescRight">The·format·type·is·required·to·provide·a·vector·of·all·supported·file·extensions.·<br·/></td></tr>
152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>	152	<tr·class="separator:ad7a4548027a4ec0e55643ebe5bd100ac"><td·class="memSeparator"·colspan="2"> </td></tr>
153	</table>	153	</table>
154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>	154	<a·name="details"·id="details"></a><h2·class="groupheader">Detailed·Description</h2>
155	<div·class="textblock"><div·class="compoundTemplParams">template<typename·t><br·/>	155	<div·class="textblock"><div·class="compoundTemplParams">template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t><br·/>
156	interface·seqan3::structure_file_input_format<·t·></div><p>The·generic·concept·for·structure·file·in·formats.·</p>	156	interface·seqan3::structure_file_input_format<·t·></div><p>The·generic·concept·for·structure·file·in·formats.·</p>
157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>	157	<p>The·details·of·this·concept·are·only·relevant·to·developers·who·wish·to·implement·their·own·format.·The·requirements·for·this·concept·are·given·as·related·functions·and·type·traits.·Types·that·satisfy·this·concept·are·shown·as·"implementing·this·interface".</p>
158	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__structure__file.html">Structure·File</a>·</dd></dl>	158	<dl·class="section·remark"><dt>Remarks</dt><dd>For·a·complete·overview,·take·a·look·at·<a·class="el"·href="group__io__structure__file.html">Structure·File</a>·</dd></dl>
159	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>	159	</div><h2·class="groupheader">Friends·And·Related·Symbol·Documentation</h2>
160	<a·id="a6518905d15efa3b33c869a14d1508275"·name="a6518905d15efa3b33c869a14d1508275"></a>	160	<a·id="a6518905d15efa3b33c869a14d1508275"·name="a6518905d15efa3b33c869a14d1508275"></a>
161	<h2·class="memtitle"><span·class="permalink"><a·href="#a6518905d15efa3b33c869a14d1508275">◆ </a></span>read_structure_record()</h2>	161	<h2·class="memtitle"><span·class="permalink"><a·href="#a6518905d15efa3b33c869a14d1508275">◆ </a></span>read_structure_record()</h2>

162	<div·class="memitem">	162	<div·class="memitem">
163	<div·class="memproto">	163	<div·class="memproto">
164	<div·class="memtemplate">	164	<div·class="memtemplate">
165	template<typename·t·>·</div>	165	template<<a·class="el"·href="classseqan3_1_1debug__stream__type.html">typename</a>·t·>·</div>
166	<table·class="mlabels">	166	<table·class="mlabels">
167	··<tr>	167	··<tr>
168	··<td·class="mlabels-left">	168	··<td·class="mlabels-left">
169	······<table·class="memname">	169	······<table·class="memname">
170	········<tr>	170	········<tr>
171	··········<td·class="memname">void·read_structure_record·</td>	171	··········<td·class="memname"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">void</a>·read_structure_record·</td>
172	··········<td>(</td>	172	··········<td>(</td>
173	··········<td·class="paramtype">stream_type·& </td>	173	··········<td·class="paramtype"><a·class="el"·href="classseqan3_1_1debug__stream__type.html">stream_type</a>·& </td>
174	··········<td·class="paramname"><em>stream</em>,·</td>	174	··········<td·class="paramname"><em>stream</em>,·</td>
175	········</tr>	175	········</tr>
176	········<tr>	176	········<tr>
177	··········<td·class="paramkey"></td>	177	··········<td·class="paramkey"></td>
178	··········<td></td>	178	··········<td></td>
179	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1structure__file__input__options.html">structure_file_input_options</a><·seq_legal_alph_type,·structured_seq_combined·>·const·& </td>	179	··········<td·class="paramtype"><a·class="el"·href="structseqan3_1_1structure__file__input__options.html">structure_file_input_options</a><·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">seq_legal_alph_type</a>,·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">structured_seq_combined</a>·>·<a·class="el"·href="classseqan3_1_1debug__stream__type.html">const</a>·& </td>
180	··········<td·class="paramname"><em>options</em>,·</td>	180	··········<td·class="paramname"><em>options</em>,·</td>
181	········</tr>	181	········</tr>
182	········<tr>	182	········<tr>
183	··········<td·class="paramkey"></td>	183	··········<td·class="paramkey"></td>
184	··········<td></td>	184	··········<td></td>
185	··········<td·class="paramtype">seq_type·& </td>	185	··········<td·class="paramtype">seq_type·& </td>
186	··········<td·class="paramname"><em>seq</em>,·</td>	186	··········<td·class="paramname"><em>seq</em>,·</td>


Offset 134, 33 lines modified		Offset 134, 35 lines modified
134	<div·class="line"><a·id="l00006"·name="l00006"></a><span·class="lineno">····6</span>·</div>	134	<div·class="line"><a·id="l00006"·name="l00006"></a><span·class="lineno">····6</span>·</div>
135	<div·class="line"><a·id="l00007"·name="l00007"></a><span·class="lineno">····7</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>	135	<div·class="line"><a·id="l00007"·name="l00007"></a><span·class="lineno">····7</span><span·class="keyword">namespace·</span><a·class="code·hl_namespace"·href="namespaceseqan3.html">seqan3</a></div>
136	<div·class="line"><a·id="l00008"·name="l00008"></a><span·class="lineno">····8</span>{</div>	136	<div·class="line"><a·id="l00008"·name="l00008"></a><span·class="lineno">····8</span>{</div>
137	<div·class="line"><a·id="l00009"·name="l00009"></a><span·class="lineno">····9</span>·</div>	137	<div·class="line"><a·id="l00009"·name="l00009"></a><span·class="lineno">····9</span>·</div>
138	<div·class="line"><a·id="l00011"·name="l00011"></a><span·class="lineno">···11</span><span·class="keyword">class·</span>cleanup</div>	138	<div·class="line"><a·id="l00011"·name="l00011"></a><span·class="lineno">···11</span><span·class="keyword">class·</span>cleanup</div>
139	<div·class="line"><a·id="l00012"·name="l00012"></a><span·class="lineno">···12</span>{</div>	139	<div·class="line"><a·id="l00012"·name="l00012"></a><span·class="lineno">···12</span>{</div>
140	<div·class="line"><a·id="l00013"·name="l00013"></a><span·class="lineno">···13</span><span·class="keyword">public</span>:</div>	140	<div·class="line"><a·id="l00013"·name="l00013"></a><span·class="lineno">···13</span><span·class="keyword">public</span>:</div>
141	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>····cleanup()·=·<span·class="keyword">delete</span>;</div>
142	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span>····cleanup(cleanup·<span·class="keyword">const</span>·&)·=·<span·class="keyword">delete</span>;</div>
143	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>····cleanup·&·operator=(cleanup·<span·class="keyword">const</span>·&)·=·<span·class="keyword">delete</span>;</div>
144	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>····cleanup(cleanup·&&)·=·<span·class="keywordflow">default</span>;</div>
145	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>····cl~~eanup·&·opera~~tor=(cleanu~~p·&~~amp;&)·=·<span·class="keyword~~flow~~">def~~ault~~</span>;</div>	141	<div·class="line"><a·id="l00014"·name="l00014"></a><span·class="lineno">···14</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>()·=·<span·class="keyword">delete</span>;</div>
		142	<div·class="line"><a·id="l00015"·name="l00015"></a><span·class="lineno">···15</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>(<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·<span·class="keyword">const</span>·&)·=·<span·class="keyword">delete</span>;</div>
		143	<div·class="line"><a·id="l00016"·name="l00016"></a><span·class="lineno">···16</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·&·<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a0b4a5e4a64cc7795fccbe5328d4fa5fc">operator=</a>(<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·<span·class="keyword">const</span>·&)·=·<span·class="keyword">delete</span>;</div>
		144	<div·class="line"><a·id="l00017"·name="l00017"></a><span·class="lineno">···17</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>(<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·&&)·=·<span·class="keywordflow">default</span>;</div>
		145	<div·class="line"><a·id="l00018"·name="l00018"></a><span·class="lineno">···18</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·&·<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a0b4a5e4a64cc7795fccbe5328d4fa5fc">operator=</a>(<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>·&&)·=·<span·class="keywordflow">default</span>;</div>
146	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>·</div>	146	<div·class="line"><a·id="l00019"·name="l00019"></a><span·class="lineno">···19</span>·</div>
147	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>····cleanup(<span·class="keywordtype">char</span>·<span·class="keyword">const</span>·*·<span·class="keyword">const</span>·str)·:·file(str)·{};</div>	147	<div·class="line"><a·id="l00020"·name="l00020"></a><span·class="lineno">···20</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">cleanup</a>(<span·class="keywordtype">char</span>·<span·class="keyword">const</span>·*·<span·class="keyword">const</span>·str)·:·<a·class="code·hl_[·...·truncated·by·diffoscope;·len:·99,·SHA:·094e2d7fe698de0c1f812556a2406dc73903025642b6e8494875ffa95f9db51a·...·](str)·{};</div>
148	<div·class="line"><a·id="l00021"·name="l00021"></a><span·class="lineno">···21</span>·</div>	148	<div·class="line"><a·id="l00021"·name="l00021"></a><span·class="lineno">···21</span>·</div>
149	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span>····~cleanup()</div>	149	<div·class="line"><a·id="l00022"·name="l00022"></a><span·class="lineno">···22</span>····<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">~cleanup</a>()</div>
150	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno">···23</span>····{</div>	150	<div·class="line"><a·id="l00023"·name="l00023"></a><span·class="lineno">···23</span>····{</div>
151	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>········<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/filesystem/remove.html">std::filesystem::remove</a>(file);</div>	151	<div·class="line"><a·id="l00024"·name="l00024"></a><span·class="lineno">···24</span>········<a·class="code·hl_functionRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/filesystem/remove.html">std::filesystem::remove</a>(<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">file</a>);</div>
152	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>····}</div>	152	<div·class="line"><a·id="l00025"·name="l00025"></a><span·class="lineno">···25</span>····}</div>
153	<div·class="line"><a·id="l00026"·name="l00026"></a><span·class="lineno">···26</span>·</div>	153	<div·class="line"><a·id="l00026"·name="l00026"></a><span·class="lineno">···26</span>·</div>
154	<div·class="line"><a·id="l00027"·name="l00027"></a><span·class="lineno">···27</span><span·class="keyword">private</span>:</div>	154	<div·class="line"><a·id="l00027"·name="l00027"></a><span·class="lineno">···27</span><span·class="keyword">private</span>:</div>
155	<div·class="line"><a·id="l00028"·name="l00028"></a><span·class="lineno">···28</span>····<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·file;</div>	155	<div·class="line"><a·id="l00028"·name="l00028"></a><span·class="lineno">···28</span>····<a·class="code·hl_classRef"·target="_blank"·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>·<a·class="code·hl_function"·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">file</a>;</div>
156	<div·class="line"><a·id="l00029"·name="l00029"></a><span·class="lineno">···29</span>};</div>	156	<div·class="line"><a·id="l00029"·name="l00029"></a><span·class="lineno">···29</span>};</div>
157	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno">···31</span>·</div>	157	<div·class="line"><a·id="l00031"·name="l00031"></a><span·class="lineno">···31</span>·</div>
158	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>}·<span·class="comment">//·namespace·seqan3</span></div>	158	<div·class="line"><a·id="l00032"·name="l00032"></a><span·class="lineno">···32</span>}·<span·class="comment">//·namespace·seqan3</span></div>
159	<div·class="ttc"·id="abasic_string_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>	159	<div·class="ttc"·id="abasic_string_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
		160	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html_a0b4a5e4a64cc7795fccbe5328d4fa5fc"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html#a0b4a5e4a64cc7795fccbe5328d4fa5fc">seqan3::debug_stream_type::operator=</a></div><div·class="ttdeci">debug_stream_type·&·operator=(debug_stream_type·const·&)=default</div><div·class="ttdoc">Defaulted.</div></div>
		161	<div·class="ttc"·id="aclassseqan3_1_1debug__stream__type_html_a52628e737cfcf6d0331530f2d6f154a3"><div·class="ttname"><a·href="classseqan3_1_1debug__stream__type.html#a52628e737cfcf6d0331530f2d6f154a3">seqan3::debug_stream_type::debug_stream_type</a></div><div·class="ttdeci">debug_stream_type()=default</div><div·class="ttdoc">Defaulted.</div></div>
160	<div·class="ttc"·id="afilesystem_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/filesystem.html">filesystem</a></div></div>	162	<div·class="ttc"·id="afilesystem_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/header/filesystem.html">filesystem</a></div></div>
161	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>	163	<div·class="ttc"·id="anamespaceseqan3_html"><div·class="ttname"><a·href="namespaceseqan3.html">seqan3</a></div><div·class="ttdoc">The·main·SeqAn3·namespace.</div><div·class="ttdef"><b>Definition</b>·aligned_sequence_concept.hpp:26</div></div>
162	<div·class="ttc"·id="aremove_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/filesystem/remove.html">std::filesystem::remove</a></div><div·class="ttdeci">T·remove(T...·args)</div></div>	164	<div·class="ttc"·id="aremove_html"><div·class="ttname"><a·href="https://en.cppreference.com/w/cpp/filesystem/remove.html">std::filesystem::remove</a></div><div·class="ttdeci">T·remove(T...·args)</div></div>
163	</div><!--·fragment·--></div><!--·contents·-->	165	</div><!--·fragment·--></div><!--·contents·-->
164	</div><!--·doc-content·-->	166	</div><!--·doc-content·-->
165	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin	167	<!--·SPDX-FileCopyrightText:·2006-2024·Knut·Reinert·&·Freie·Universität·Berlin
166	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik	168	·····SPDX-FileCopyrightText:·2016-2024·Knut·Reinert·&·MPI·für·molekulare·Genetik