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3 ·f398124c506dc8669fb55863677b5960·60664·science·optional·gromacs_2025.2-1_amd64.deb3 ·f398124c506dc8669fb55863677b5960·60664·science·optional·gromacs_2025.2-1_amd64.deb
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1 -rw-r--r--···0········0········0········4·2025-05-14·01:00:25.000000·debian-binary1 -rw-r--r--···0········0········0········4·2025-05-14·01:00:25.000000·debian-binary
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2025.2-13 Version:·2025.2-1
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3294606 Installed-Size:·329462
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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74 </div><!--·top·-->74 </div><!--·top·-->
75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3850"·height="1546"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3796"·height="1712"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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Offset 263, 29 lines modifiedOffset 263, 29 lines modified
263 ····]],263 ····]],
264 ····['matrix3x3constspan_165',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],264 ····['matrix3x3constspan_165',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],
265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],
266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],
268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],
269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],
270 ····['max_171',·['max',·['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'], 
271 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max()'], 
272 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'], 
273 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],270 ····['max_171',·['max',·['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],
274 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'],271 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'],
275 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],272 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],
276 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],273 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],
277 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],274 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],
278 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],275 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],
279 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'], 
280 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'], 
281 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],276 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'],
 277 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()'],
 278 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'],
282 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'],279 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'],
 280 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],
283 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'],281 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'],
284 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)']282 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],
 283 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],
 284 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)']
285 ····]],285 ····]],
286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],286 ····['max_5f_172',·['max_',·['../structgmx_1_1MrcDataStatistics.xhtml#a3d4ebb4aee6f51e4383349225d3dee83',·1,·'gmx::MrcDataStatistics']]],
287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],287 ····['max_5fbeta_173',·['max_beta',·['../structgmx__enfrotgrp.xhtml#ac3907c78cd20eccc0e427c288bec058d',·1,·'gmx_enfrotgrp']]],
288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],288 ····['max_5fconnect_174',·['max_connect',·['../classgmx_1_1Lincs.xhtml#a7c26cd85abd23d06de22e27ee68af042',·1,·'gmx::Lincs']]],
289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp'],289 ····['max_5fcutoff2_175',·['max_cutoff2',·['../pbc_8cpp.xhtml#aa14c05a2e7b891ca9ce15895e75ff6db',·1,·'max_cutoff2():&#160;pbc.cpp'],
290 ········['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2']290 ········['../structt__pbc.xhtml#a0648f104170187ab2a5656e7c16323d6',·1,·'t_pbc::max_cutoff2']
291 ····]],291 ····]],
Offset 725, 21 lines modifiedOffset 725, 21 lines modified
725 ····['moleculeinformation_444',·['MoleculeInformation',·['../structMoleculeInformation.xhtml',·1,·'']]],725 ····['moleculeinformation_444',·['MoleculeInformation',·['../structMoleculeInformation.xhtml',·1,·'']]],
726 ····['moleculepatch_445',·['MoleculePatch',·['../structMoleculePatch.xhtml',·1,·'']]],726 ····['moleculepatch_445',·['MoleculePatch',·['../structMoleculePatch.xhtml',·1,·'']]],
727 ····['moleculepatchdatabase_446',·['MoleculePatchDatabase',·['../structMoleculePatchDatabase.xhtml',·1,·'']]],727 ····['moleculepatchdatabase_446',·['MoleculePatchDatabase',·['../structMoleculePatchDatabase.xhtml',·1,·'']]],
728 ····['moleculepatchtype_447',·['MoleculePatchType',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016',·1,·'hackblock.h']]],728 ····['moleculepatchtype_447',·['MoleculePatchType',·['../hackblock_8h.xhtml#ab96ef77f5bc6d24fdd272b55f5206016',·1,·'hackblock.h']]],
729 ····['moleculesarewhole_448',·['MoleculesAreWhole',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9af6ea0d2701a81eb19f537c7c982b2fd8',·1,·'gmx']]],729 ····['moleculesarewhole_448',·['MoleculesAreWhole',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9af6ea0d2701a81eb19f537c7c982b2fd8',·1,·'gmx']]],
730 ····['moleculetype_449',·['moleculetype',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mshift_8cpp_03.xhtml#ae9b5b921bcb8dd2b97cc0d6a14741216',·1,·'gmx::test::anonymous_namespace{mshift.cpp}::moleculeType()'],730 ····['moleculetype_449',·['moleculetype',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mshift_8cpp_03.xhtml#ae9b5b921bcb8dd2b97cc0d6a14741216',·1,·'gmx::test::anonymous_namespace{mshift.cpp}::moleculeType()'],
731 ········['../structAtomInMolblock.xhtml#adbd0c382ef27b472f0ad350a0142c809',·1,·'AtomInMolblock::moleculeType'],731 ········['../structAtomInMolblock.xhtml#adbd0c382ef27b472f0ad350a0142c809',·1,·'AtomInMolblock::moleculeType'],
732 ········['../structMolecularTopologyAtomIndices.xhtml#ac033337827f14c4585e4b1ae9eb272e3',·1,·'MolecularTopologyAtomIndices::moleculeType'],732 ········['../structMoleculeType.xhtml',·1,·'MoleculeType'],
733 ········['../classAtomProxy.xhtml#a82511a69b9b329f73b3ecaa77c7e5df0',·1,·'AtomProxy::moleculeType()'],733 ········['../classAtomProxy.xhtml#a82511a69b9b329f73b3ecaa77c7e5df0',·1,·'AtomProxy::moleculeType()'],
734 ········['../structMoleculeType.xhtml',·1,·'MoleculeType']734 ········['../structMolecularTopologyAtomIndices.xhtml#ac033337827f14c4585e4b1ae9eb272e3',·1,·'MolecularTopologyAtomIndices::moleculeType']
735 ····]],735 ····]],
736 ····['molname_450',·['molname',·['../structswap__group.xhtml#a1133a26ad7fa6ffc6614b1a50127f47d',·1,·'swap_group']]],736 ····['molname_450',·['molname',·['../structswap__group.xhtml#a1133a26ad7fa6ffc6614b1a50127f47d',·1,·'swap_group']]],
 737 ····['mols_451',·['mols',·['../structMoleculeInformation.xhtml#a945c507ad8f991d11901cb3fcce96487',·1,·'MoleculeInformation::mols'],
737 ····['mols_451',·['mols',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab3aac1e190ed353a1e717fa5fa60b61a',·1,·'gmx::ImdSession::Impl::mols'],738 ········['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab3aac1e190ed353a1e717fa5fa60b61a',·1,·'gmx::ImdSession::Impl::mols']
738 ········['../structMoleculeInformation.xhtml#a945c507ad8f991d11901cb3fcce96487',·1,·'MoleculeInformation::mols'] 
739 ····]],739 ····]],
740 ····['moltypehasvsite_452',·['moltypeHasVsite',·['../computemultibodycutoffs_8cpp.xhtml#a7759c5f444a2540620bd7aed6b99577a',·1,·'computemultibodycutoffs.cpp']]],740 ····['moltypehasvsite_452',·['moltypeHasVsite',·['../computemultibodycutoffs_8cpp.xhtml#a7759c5f444a2540620bd7aed6b99577a',·1,·'computemultibodycutoffs.cpp']]],
741 ····['momentum_453',·['momentum',·['../structSystemMomentum.xhtml#a12a78f8e5157ad1e319366a2e4bebc1c',·1,·'SystemMomentum']]],741 ····['momentum_453',·['momentum',·['../structSystemMomentum.xhtml#a12a78f8e5157ad1e319366a2e4bebc1c',·1,·'SystemMomentum']]],
742 ····['momentumfullstep_454',·['momentumFullStep',·['../structSystemMomenta.xhtml#ab8b254f7b2e18c4c7377bf444edad356',·1,·'SystemMomenta']]],742 ····['momentumfullstep_454',·['momentumFullStep',·['../structSystemMomenta.xhtml#ab8b254f7b2e18c4c7377bf444edad356',·1,·'SystemMomenta']]],
743 ····['momentumhalfstep_455',·['momentumHalfStep',·['../structSystemMomenta.xhtml#aa8d185ac5f2bc0357cb2065c31ebaa25',·1,·'SystemMomenta']]],743 ····['momentumhalfstep_455',·['momentumHalfStep',·['../structSystemMomenta.xhtml#aa8d185ac5f2bc0357cb2065c31ebaa25',·1,·'SystemMomenta']]],
744 ····['momentumoldhalfstep_456',·['momentumOldHalfStep',·['../structSystemMomenta.xhtml#af9444ab09b89450b547c049d37cf052e',·1,·'SystemMomenta']]],744 ····['momentumoldhalfstep_456',·['momentumOldHalfStep',·['../structSystemMomenta.xhtml#af9444ab09b89450b547c049d37cf052e',·1,·'SystemMomenta']]],
745 ····['mon_457',·['mon',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edvecs.xhtml#a09f4fe90ebb817228b3fb0824e790530',·1,·'anonymous_namespace{edsam.cpp}::t_edvecs']]],745 ····['mon_457',·['mon',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edvecs.xhtml#a09f4fe90ebb817228b3fb0824e790530',·1,·'anonymous_namespace{edsam.cpp}::t_edvecs']]],
Offset 763, 23 lines modifiedOffset 763, 23 lines modified
763 ····['mpicommall_475',·['mpicommall',·['../classgmx_1_1DomainCommForward.xhtml#acca96094d4f43e2ae83ec208f1b99e88',·1,·'gmx::DomainCommForward::mpiCommAll()'],763 ····['mpicommall_475',·['mpicommall',·['../classgmx_1_1DomainCommForward.xhtml#acca96094d4f43e2ae83ec208f1b99e88',·1,·'gmx::DomainCommForward::mpiCommAll()'],
764 ········['../classgmx_1_1DomainCommBackward.xhtml#ac550edb7920c56ccd8caf801c68cb054',·1,·'gmx::DomainCommBackward::mpiCommAll()']764 ········['../classgmx_1_1DomainCommBackward.xhtml#ac550edb7920c56ccd8caf801c68cb054',·1,·'gmx::DomainCommBackward::mpiCommAll()']
765 ····]],765 ····]],
766 ····['mpicommx_476',·['mpiCommX',·['../structPmeShared.xhtml#a4a18c130ef148fbaca140a4a47411227',·1,·'PmeShared']]],766 ····['mpicommx_476',·['mpiCommX',·['../structPmeShared.xhtml#a4a18c130ef148fbaca140a4a47411227',·1,·'PmeShared']]],
767 ····['mpicommy_477',·['mpiCommY',·['../structPmeShared.xhtml#ad622e2d0e19fc94d173231cd03e72afe',·1,·'PmeShared']]],767 ····['mpicommy_477',·['mpiCommY',·['../structPmeShared.xhtml#ad622e2d0e19fc94d173231cd03e72afe',·1,·'PmeShared']]],
768 ····['mpilibraryversionstring_478',·['mpiLibraryVersionString',·['../namespacegmx.xhtml#a49c75db6d97651626c88f9f23f4bffaa',·1,·'gmx']]],768 ····['mpilibraryversionstring_478',·['mpiLibraryVersionString',·['../namespacegmx.xhtml#a49c75db6d97651626c88f9f23f4bffaa',·1,·'gmx']]],
769 ····['mpisetupvalid_479',·['mpiSetupValid',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#aed91522d2a8bd6ddc44d716a07ed6a07',·1,·'gmx::test::MultiSimTest']]],769 ····['mpisetupvalid_479',·['mpiSetupValid',·['../classgmx_1_1test_1_1MultiSimTest.xhtml#aed91522d2a8bd6ddc44d716a07ed6a07',·1,·'gmx::test::MultiSimTest']]],
770 ····['mpitest_2ecpp_480',·['mpitest.cpp',·['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],770 ····['mpitest_2ecpp_480',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
771 ········['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']771 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
772 ····]],772 ····]],
773 ····['mpitest_2eh_481',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],773 ····['mpitest_2eh_481',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
774 ····['mpiwaitall_482',·['mpiWaitall',·['../namespacegmx_1_1anonymous__namespace_02haloexchange_8cpp_03.xhtml#a6cc9ed97595c08f467311956380390ad',·1,·'gmx::anonymous_namespace{haloexchange.cpp}']]],774 ····['mpiwaitall_482',·['mpiWaitall',·['../namespacegmx_1_1anonymous__namespace_02haloexchange_8cpp_03.xhtml#a6cc9ed97595c08f467311956380390ad',·1,·'gmx::anonymous_namespace{haloexchange.cpp}']]],
775 ····['mrcdatamode_483',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],775 ····['mrcdatamode_483',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],
776 ····['mrcdatastatistics_484',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],776 ····['mrcdatastatistics_484',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],
777 ····['mrcdensitymap_2ecpp_485',·['mrcdensitymap.cpp',·['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],777 ····['mrcdensitymap_2ecpp_485',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
778 ········['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']778 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
779 ····]],779 ····]],
780 ····['mrcdensitymap_2eh_486',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],780 ····['mrcdensitymap_2eh_486',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
781 ····['mrcdensitymapheader_487',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],781 ····['mrcdensitymapheader_487',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],
782 ····['mrcdensitymapheader_2ecpp_488',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],782 ····['mrcdensitymapheader_2ecpp_488',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
783 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']783 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
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470 ····['nocontentsmatch_306',·['NoContentsMatch',·['../classgmx_1_1test_1_1NoContentsMatch.xhtml',·1,·'gmx::test']]],470 ····['nocontentsmatch_306',·['NoContentsMatch',·['../classgmx_1_1test_1_1NoContentsMatch.xhtml',·1,·'gmx::test']]],
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477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
478 ····['non_20bonded_20interaction_20module_314',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],478 ····['non_20bonded_20interaction_20module_314',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],
479 ····['non_20bonded_20pair_20interactions_315',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],479 ····['non_20bonded_20pair_20interactions_315',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],
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481 ····['nonbonded_317',·['nonbonded',·['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81a661e23745453f323614a6316657bcbde',·1,·'gmx::Nonbonded'], 
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485 ········['../tests_2nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)']485 ········['../tests_2nonbonded__bench_8cpp.xhtml',·1,·'(Global·Namespace)']
486 ····]],486 ····]],
487 ····['nonbonded_5fbench_2eh_319',·['nonbonded_bench.h',·['../nonbonded__bench_8h.xhtml',·1,·'']]],487 ····['nonbonded_5fbench_2eh_319',·['nonbonded_bench.h',·['../nonbonded__bench_8h.xhtml',·1,·'']]],
488 ····['nonbonded_5fverlet_5ft_320',·['nonbonded_verlet_t',·['../structgmx_1_1nonbonded__verlet__t.xhtml#ab52ad7395380f5bd86727743c6d916a5',·1,·'gmx::nonbonded_verlet_t::nonbonded_verlet_t(std::unique_ptr&lt;·PairlistSets·&gt;·pairlistSets,·std::unique_ptr&lt;·PairSearch·&gt;·pairSearch,·std::unique_ptr&lt;·nbnxn_atomdata_t·&gt;·nbat,·const·NbnxmKernelSetup·&amp;kernelSetup,·std::unique_ptr&lt;·ExclusionChecker·&gt;·exclusionChecker,·NbnxmGpu·*gpu_nbv,·gmx_wallcycle·*wcycle)'],488 ····['nonbonded_5fverlet_5ft_320',·['nonbonded_verlet_t',·['../structgmx_1_1nonbonded__verlet__t.xhtml#ab52ad7395380f5bd86727743c6d916a5',·1,·'gmx::nonbonded_verlet_t::nonbonded_verlet_t(std::unique_ptr&lt;·PairlistSets·&gt;·pairlistSets,·std::unique_ptr&lt;·PairSearch·&gt;·pairSearch,·std::unique_ptr&lt;·nbnxn_atomdata_t·&gt;·nbat,·const·NbnxmKernelSetup·&amp;kernelSetup,·std::unique_ptr&lt;·ExclusionChecker·&gt;·exclusionChecker,·NbnxmGpu·*gpu_nbv,·gmx_wallcycle·*wcycle)'],
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 423 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a9326cd205dd093e9d6fc22aa590348d3',·1,·'gmx::UniformIntDistribution::param_type::operator==()'],
 424 ········['../classgmx_1_1ThreeFry2x64General.xhtml#abdd84b4ad2be63bab6281d334a52b8f4',·1,·'gmx::ThreeFry2x64General::operator==()'],
 425 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ab4eceef543b7c7870a20aa540c4ee14f',·1,·'gmx::TabulatedNormalDistribution::operator==()'],
 426 ········['../classgmx_1_1NormalDistribution.xhtml#aaa3b31154447ead4f82a4f703cbbb72e',·1,·'gmx::NormalDistribution::operator==()'],
427 ········['../classgmx_1_1SelectionParserSymbolIterator.xhtml#a59e459feab609adf418f245fe3306fe3',·1,·'gmx::SelectionParserSymbolIterator::operator==()']427 ········['../classgmx_1_1SelectionParserSymbolIterator.xhtml#a59e459feab609adf418f245fe3306fe3',·1,·'gmx::SelectionParserSymbolIterator::operator==()']
428 ····]],428 ····]],
 429 ····['operator_5b_5d_133',·['operator[]',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MsdData.xhtml#ac8c1e5cf4bc31bc59fbe02e1e3e0020f',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdData::operator[]()'],
429 ····['operator_5b_5d_133',·['operator[]',·['../classgmx_1_1FixedCapacityVector.xhtml#ac695b3695422899aa106a748f2242166',·1,·'gmx::FixedCapacityVector::operator[]()'], 
430 ········['../classgmx_1_1ListOfLists.xhtml#acd74b039aaea684b78fc368d2b0bb289',·1,·'gmx::ListOfLists::operator[]()'], 
431 ········['../structgmx_1_1EnumerationArray.xhtml#a19f0ee284d558c5158a392189af41237',·1,·'gmx::EnumerationArray::operator[]()'],430 ········['../structgmx_1_1EnumerationArray.xhtml#a19f0ee284d558c5158a392189af41237',·1,·'gmx::EnumerationArray::operator[]()'],
432 ········['../classgmx_1_1ArrayRef.xhtml#ae5992e7e6c407d5f8fb0c08dd314b303',·1,·'gmx::ArrayRef::operator[]()'],431 ········['../classgmx_1_1ArrayRef.xhtml#ae5992e7e6c407d5f8fb0c08dd314b303',·1,·'gmx::ArrayRef::operator[]()'],
433 ········['../classStringTable.xhtml#ad323be1b121601515ed9af457ec5ddcc',·1,·'StringTable::operator[]()'],432 ········['../classStringTable.xhtml#ad323be1b121601515ed9af457ec5ddcc',·1,·'StringTable::operator[]()'],
434 ········['../classgmx_1_1BasicVector.xhtml#a1f32a1ba41548841b6696001d14ff278',·1,·'gmx::BasicVector::operator[](int·i)·const'],433 ········['../classgmx_1_1BasicVector.xhtml#a1f32a1ba41548841b6696001d14ff278',·1,·'gmx::BasicVector::operator[](int·i)·const'],
435 ········['../classgmx_1_1BasicVector.xhtml#a1c8a8588a9e93f68dba743c0cb9e18af',·1,·'gmx::BasicVector::operator[](int·i)'],434 ········['../classgmx_1_1BasicVector.xhtml#a1c8a8588a9e93f68dba743c0cb9e18af',·1,·'gmx::BasicVector::operator[](int·i)'],
436 ········['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#afcfc3b3506eb1e6d13bfb6e689c27ea0',·1,·'gmx::KeyValueTreeObjectBuilder::operator[]()'],435 ········['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#afcfc3b3506eb1e6d13bfb6e689c27ea0',·1,·'gmx::KeyValueTreeObjectBuilder::operator[]()'],
437 ········['../classgmx_1_1KeyValueTreePath.xhtml#a62cf97a0ac5b6cbc7af9888ed59e0f85',·1,·'gmx::KeyValueTreePath::operator[]()'],436 ········['../classgmx_1_1KeyValueTreePath.xhtml#a62cf97a0ac5b6cbc7af9888ed59e0f85',·1,·'gmx::KeyValueTreePath::operator[]()'],
438 ········['../classgmx_1_1FixedCapacityVector.xhtml#a25ced2077a500cd5614846ad603a52a9',·1,·'gmx::FixedCapacityVector::operator[]()'],437 ········['../classgmx_1_1FixedCapacityVector.xhtml#a25ced2077a500cd5614846ad603a52a9',·1,·'gmx::FixedCapacityVector::operator[](size_type·n)·noexcept'],
439 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02msd_8cpp_03_1_1MsdData.xhtml#ac8c1e5cf4bc31bc59fbe02e1e3e0020f',·1,·'gmx::analysismodules::anonymous_namespace{msd.cpp}::MsdData::operator[]()'],438 ········['../classgmx_1_1FixedCapacityVector.xhtml#ac695b3695422899aa106a748f2242166',·1,·'gmx::FixedCapacityVector::operator[](size_type·n)·const·noexcept'],
440 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#a9d827cc183213269fd50ded567b814c9',·1,·'gmx::internal::SimdArrayRef::operator[]()'],439 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#a9d827cc183213269fd50ded567b814c9',·1,·'gmx::internal::SimdArrayRef::operator[]()'],
441 ········['../classgmx_1_1basic__mdspan.xhtml#abfb92b8c8080a27aa05100195f8cad65',·1,·'gmx::basic_mdspan::operator[](const·IndexType·index)·const·noexcept'],440 ········['../classgmx_1_1basic__mdspan.xhtml#abfb92b8c8080a27aa05100195f8cad65',·1,·'gmx::basic_mdspan::operator[](const·IndexType·index)·const·noexcept'],
442 ········['../classgmx_1_1basic__mdspan.xhtml#adba2c0279184c7c51724dce1b5ba53f8',·1,·'gmx::basic_mdspan::operator[](const·IndexType·&amp;i)·const·noexcept'],441 ········['../classgmx_1_1basic__mdspan.xhtml#adba2c0279184c7c51724dce1b5ba53f8',·1,·'gmx::basic_mdspan::operator[](const·IndexType·&amp;i)·const·noexcept'],
443 ········['../classgmx_1_1PaddedVector.xhtml#aa4af8a957abb5d0c28a321c3b712a2c7',·1,·'gmx::PaddedVector::operator[](int·i)·const'],442 ········['../classgmx_1_1PaddedVector.xhtml#aa4af8a957abb5d0c28a321c3b712a2c7',·1,·'gmx::PaddedVector::operator[](int·i)·const'],
444 ········['../classgmx_1_1PaddedVector.xhtml#afdbd0a9199b2b06faf9039a172b7a76e',·1,·'gmx::PaddedVector::operator[](int·i)']443 ········['../classgmx_1_1PaddedVector.xhtml#afdbd0a9199b2b06faf9039a172b7a76e',·1,·'gmx::PaddedVector::operator[](int·i)'],
 444 ········['../classgmx_1_1ListOfLists.xhtml#acd74b039aaea684b78fc368d2b0bb289',·1,·'gmx::ListOfLists::operator[]()']
445 ····]],445 ····]],
446 ····['operator_5e_134',·['operator^',·['../group__module__simd.xhtml#ga8385ef4b8312eff3f715d2f817604e51',·1,·'gmx::operator^(Simd4Float·a,·Simd4Float·b)'],446 ····['operator_5e_134',·['operator^',·['../group__module__simd.xhtml#ga8385ef4b8312eff3f715d2f817604e51',·1,·'gmx::operator^(Simd4Float·a,·Simd4Float·b)'],
 447 ········['../group__module__simd.xhtml#ga37544015fbce9d2b11dce07e159e878b',·1,·'gmx::operator^(SimdFloat·a,·SimdFloat·b)'],
447 ········['../group__module__simd.xhtml#gad65f7d7aa6d2a6c4b697ac0be0f3a616',·1,·'gmx::operator^(SimdDouble·a,·SimdDouble·b)'],448 ········['../group__module__simd.xhtml#gad65f7d7aa6d2a6c4b697ac0be0f3a616',·1,·'gmx::operator^(SimdDouble·a,·SimdDouble·b)'],
448 ········['../group__module__simd.xhtml#gabb7e81f2ef83cfb9aaae088c8762c2b0',·1,·'gmx::operator^(SimdFInt32·a,·SimdFInt32·b)'], 
449 ········['../group__module__simd.xhtml#gaba7ccd2477ecf6b07f5b7696d9490038',·1,·'gmx::operator^(SimdDInt32·a,·SimdDInt32·b)'],449 ········['../group__module__simd.xhtml#gaba7ccd2477ecf6b07f5b7696d9490038',·1,·'gmx::operator^(SimdDInt32·a,·SimdDInt32·b)'],
450 ········['../group__module__simd.xhtml#ga37544015fbce9d2b11dce07e159e878b',·1,·'gmx::operator^(SimdFloat·a,·SimdFloat·b)'], 
451 ········['../group__module__simd.xhtml#gaad7bb7baf5edd91a8707584c9cdc086e',·1,·'gmx::operator^(Simd4Double·a,·Simd4Double·b)']450 ········['../group__module__simd.xhtml#gaad7bb7baf5edd91a8707584c9cdc086e',·1,·'gmx::operator^(Simd4Double·a,·Simd4Double·b)'],
 451 ········['../group__module__simd.xhtml#gabb7e81f2ef83cfb9aaae088c8762c2b0',·1,·'gmx::operator^(SimdFInt32·a,·SimdFInt32·b)']
452 ····]],452 ····]],
453 ····['operator_7c_135',·['operator|',·['../group__module__simd.xhtml#gabcaa9a287c021ad7e3507311ffe23497',·1,·'gmx::operator|(Simd4Double·a,·Simd4Double·b)'],453 ····['operator_7c_135',·['operator|',·['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'],
454 ········['../group__module__simd.xhtml#gad759e852213903c61d6d4b9053e794fc',·1,·'gmx::operator|(Simd4Float·a,·Simd4Float·b)'],454 ········['../group__module__simd.xhtml#gad759e852213903c61d6d4b9053e794fc',·1,·'gmx::operator|(Simd4Float·a,·Simd4Float·b)'],
455 ········['../group__module__simd.xhtml#ga72cbfbcd5395b355e242f2ef4284f5c5',·1,·'gmx::operator|(SimdDouble·a,·SimdDouble·b)'],455 ········['../group__module__simd.xhtml#ga72cbfbcd5395b355e242f2ef4284f5c5',·1,·'gmx::operator|(SimdDouble·a,·SimdDouble·b)'],
456 ········['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],456 ········['../group__module__simd.xhtml#ga65d3eb9cd43b33b4665dfe676c0e79d2',·1,·'gmx::operator|(SimdDInt32·a,·SimdDInt32·b)'],
 457 ········['../group__module__simd.xhtml#gabcaa9a287c021ad7e3507311ffe23497',·1,·'gmx::operator|(Simd4Double·a,·Simd4Double·b)'],
457 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|()'], 
458 ········['../group__module__simd.xhtml#ga69973d1808eb0e8e60715d3abf01cd22',·1,·'gmx::operator|(SimdFloat·a,·SimdFloat·b)'], 
459 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)']458 ········['../group__module__simd.xhtml#gaf6f2042babc63e1b20b08ed61d859f74',·1,·'gmx::operator|(SimdFInt32·a,·SimdFInt32·b)'],
 459 ········['../classgmx_1_1FlagsTemplate.xhtml#a3320b083043b67b957a2a0f0d7afc331',·1,·'gmx::FlagsTemplate::operator|(const·FlagsTemplate&lt;·FlagType·&gt;·&amp;other)·const']
460 ····]],460 ····]],
461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],461 ····['operator_7c_3d_136',·['operator|=',·['../classgmx_1_1FlagsTemplate.xhtml#ae042cf7992ac906cf26a15a08708b779',·1,·'gmx::FlagsTemplate']]],
462 ····['operator_7c_7c_137',·['operator||',·['../group__module__simd.xhtml#gab7b197309edc60323a129fa9620a7400',·1,·'gmx::operator||(SimdFIBool·a,·SimdFIBool·b)'], 
463 ········['../group__module__simd.xhtml#ga5d5483d15fe15e3c3eaf1e4e90e53f90',·1,·'gmx::operator||(Simd4DBool·a,·Simd4DBool·b)'],462 ····['operator_7c_7c_137',·['operator||',·['../group__module__simd.xhtml#ga5d5483d15fe15e3c3eaf1e4e90e53f90',·1,·'gmx::operator||(Simd4DBool·a,·Simd4DBool·b)'],
464 ········['../group__module__simd.xhtml#gaf2ab4b4f3d3e7f6e9a012df64c1d9f3c',·1,·'gmx::operator||(Simd4FBool·a,·Simd4FBool·b)'],463 ········['../group__module__simd.xhtml#gaf2ab4b4f3d3e7f6e9a012df64c1d9f3c',·1,·'gmx::operator||(Simd4FBool·a,·Simd4FBool·b)'],
465 ········['../group__module__simd.xhtml#gad1da27c5bc4fd40afe78810c7b6e0730',·1,·'gmx::operator||(SimdDBool·a,·SimdDBool·b)'],464 ········['../group__module__simd.xhtml#gad1da27c5bc4fd40afe78810c7b6e0730',·1,·'gmx::operator||(SimdDBool·a,·SimdDBool·b)'],
466 ········['../group__module__simd.xhtml#ga2382ca9a262a0503bb5dcfcec09df671',·1,·'gmx::operator||(SimdDIBool·a,·SimdDIBool·b)'],465 ········['../group__module__simd.xhtml#ga2382ca9a262a0503bb5dcfcec09df671',·1,·'gmx::operator||(SimdDIBool·a,·SimdDIBool·b)'],
467 ········['../group__module__simd.xhtml#ga5595db8a2c813f0ae078285a1b6b8bd3',·1,·'gmx::operator||(SimdFBool·a,·SimdFBool·b)']466 ········['../group__module__simd.xhtml#ga5595db8a2c813f0ae078285a1b6b8bd3',·1,·'gmx::operator||(SimdFBool·a,·SimdFBool·b)'],
 467 ········['../group__module__simd.xhtml#gab7b197309edc60323a129fa9620a7400',·1,·'gmx::operator||(SimdFIBool·a,·SimdFIBool·b)']
468 ····]],468 ····]],
469 ····['operator_7e_138',·['operator~',·['../classgmx_1_1FlagsTemplate.xhtml#a38267207d85020c70e257cd26f526077',·1,·'gmx::FlagsTemplate']]],469 ····['operator_7e_138',·['operator~',·['../classgmx_1_1FlagsTemplate.xhtml#a38267207d85020c70e257cd26f526077',·1,·'gmx::FlagsTemplate']]],
470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],470 ····['opt_139',·['opt',·['../structt__filenm.xhtml#ae5882b5fc5beeb495f11a2e9307c64aa',·1,·'t_filenm']]],
471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],471 ····['opt2bset_140',·['opt2bset',·['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],
472 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']472 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']
473 ····]],473 ····]],
474 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],474 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],
Offset 510, 74 lines modifiedOffset 510, 74 lines modified
510 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']510 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']
511 ····]],511 ····]],
512 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],512 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],
513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],513 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],
514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],514 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],
515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],515 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],
516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],516 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],
517 ····['option_160',·['option',·['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],517 ····['option_160',·['option',·['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'],
518 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],518 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],
519 ········['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const']519 ········['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option']
520 ····]],520 ····]],
521 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],521 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],
522 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],522 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],
523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],523 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],
524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],524 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],
525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],525 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],
526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],526 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],
527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],527 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],
528 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],528 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'],
529 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],529 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],
530 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],530 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],
531 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],531 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],
532 ········['../classgmx_1_1test_1_1anonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a7d87e123198297afec33a2f9e047afea',·1,·'gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],532 ········['../classgmx_1_1test_1_1anonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a7d87e123198297afec33a2f9e047afea',·1,·'gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],
533 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],533 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],
534 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],534 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'],
 535 ········['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'],
535 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],536 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'],
536 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],537 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],
537 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],538 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],
538 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],539 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],
539 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],540 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],
540 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'],541 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()']
541 ········['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'] 
542 ····]],542 ····]],
543 ····['optionlist_169',·['optionlist',·['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList'], 
544 ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList']543 ····['optionlist_169',·['optionlist',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList'],
 544 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList']
545 ····]],545 ····]],
546 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],546 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],
547 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],547 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],
548 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],548 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],
549 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],549 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],
550 ····['options_174',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],550 ····['options_174',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],
551 ········['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],551 ········['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],
552 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],552 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],
553 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()'],553 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()'],
554 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'],554 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()'],
555 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],555 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],
556 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()']556 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options']
557 ····]],557 ····]],
558 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],558 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],
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Offset 26, 20 lines modifiedOffset 26, 20 lines modified
26 ····['paddedconstarrayref_16',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],26 ····['paddedconstarrayref_16',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]],
27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],
28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']
29 ····]],29 ····]],
30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],
31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],
32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],
33 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'], 
34 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],33 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],
35 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],34 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],
 35 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'],
36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],
 37 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'],
37 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],38 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],
38 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'], 
39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']
40 ····]],40 ····]],
41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
Offset 68, 38 lines modifiedOffset 68, 38 lines modified
68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],
69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],
70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],
71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],
72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],
73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],
75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff'], 
76 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff']75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff'],
 76 ········['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff']
77 ····]],77 ····]],
78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],
79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],
80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],
81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'],81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'],
82 ········['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()']82 ········['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()']
83 ····]],83 ····]],
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85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],
86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],
87 ········['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'], 
88 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()']87 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()'],
 88 ········['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet']
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91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
92 ····['pairlistsets_58',·['pairlistsets',·['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()'], 
93 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],92 ····['pairlistsets_58',·['pairlistsets',·['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],
94 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets']93 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets'],
 94 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()']
95 ····]],95 ····]],
96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
 97 ····['pairlisttype_60',·['pairlisttype',·['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType'],
97 ····['pairlisttype_60',·['pairlisttype',·['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType'],98 ········['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType']
98 ········['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType'] 
99 ····]],99 ····]],
100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],
101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],
102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],
103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],
104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],
105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']
Offset 110, 51 lines modifiedOffset 110, 51 lines modified
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111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],
112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],
113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],
115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],
116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],
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117 ····['parallelconsistencyerror_74',·['parallelconsistencyerror',·['../classgmx_1_1ParallelConsistencyError.xhtml#a30850fa25d3059fa861607dd0eb20bd2',·1,·'gmx::ParallelConsistencyError::ParallelConsistencyError()'],118 ········['../classgmx_1_1ParallelConsistencyError.xhtml#a30850fa25d3059fa861607dd0eb20bd2',·1,·'gmx::ParallelConsistencyError::ParallelConsistencyError()']
118 ········['../classgmx_1_1ParallelConsistencyError.xhtml',·1,·'gmx::ParallelConsistencyError'] 
119 ····]],119 ····]],
120 ····['paralleldatastarted_75',·['paralleldatastarted',·['../classgmx_1_1IAnalysisDataModule.xhtml#aeca0c095b7f31aec0f58643bed0e0895',·1,·'gmx::IAnalysisDataModule::parallelDataStarted()'],120 ····['paralleldatastarted_75',·['paralleldatastarted',·['../classgmx_1_1IAnalysisDataModule.xhtml#aeca0c095b7f31aec0f58643bed0e0895',·1,·'gmx::IAnalysisDataModule::parallelDataStarted()'],
121 ········['../classgmx_1_1AnalysisDataModuleParallel.xhtml#ae58dd25d11bc02bd4af8b7f36df62edf',·1,·'gmx::AnalysisDataModuleParallel::parallelDataStarted()'],121 ········['../classgmx_1_1AnalysisDataModuleParallel.xhtml#ae58dd25d11bc02bd4af8b7f36df62edf',·1,·'gmx::AnalysisDataModuleParallel::parallelDataStarted()'],
122 ········['../classgmx_1_1AnalysisDataSimpleHistogramModule.xhtml#a3d06d76f51b9e41e945a997b21efd392',·1,·'gmx::AnalysisDataSimpleHistogramModule::parallelDataStarted()'],122 ········['../classgmx_1_1AnalysisDataSimpleHistogramModule.xhtml#a3d06d76f51b9e41e945a997b21efd392',·1,·'gmx::AnalysisDataSimpleHistogramModule::parallelDataStarted()'],
123 ········['../classgmx_1_1AnalysisDataWeightedHistogramModule.xhtml#aef9b177d826d8afe625be7056ef2c607',·1,·'gmx::AnalysisDataWeightedHistogramModule::parallelDataStarted()'],123 ········['../classgmx_1_1AnalysisDataWeightedHistogramModule.xhtml#aef9b177d826d8afe625be7056ef2c607',·1,·'gmx::AnalysisDataWeightedHistogramModule::parallelDataStarted()'],
124 ········['../classgmx_1_1AnalysisDataProxy.xhtml#af4720264b81a508876c8e21731585ab0',·1,·'gmx::AnalysisDataProxy::parallelDataStarted()']124 ········['../classgmx_1_1AnalysisDataProxy.xhtml#af4720264b81a508876c8e21731585ab0',·1,·'gmx::AnalysisDataProxy::parallelDataStarted()']
125 ····]],125 ····]],
126 ····['parallelizable_20handling_20of_20output_20data_20analysisdata_76',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],126 ····['parallelizable_20handling_20of_20output_20data_20analysisdata_76',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]],
127 ····['parallelization_77',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],127 ····['parallelization_77',·['Parallelization',·['../page_analysisdata.xhtml#section_analysisdata_parallelization',·1,·'']]],
128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],
130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],
132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],
 133 ····['param_83',·['param',·['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],
133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],134 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],
134 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'], 
135 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],135 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],
136 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],136 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],
 137 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param'],
137 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'], 
138 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'], 
139 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],138 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],
140 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param']139 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],
 140 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()']
141 ····]],141 ····]],
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 143 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml#a479bbfe6aea453e1b93fb6c46b2a586a',·1,·'gmx::NormalDistribution::param_type::param_type()'],
 144 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'],
 145 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'],
 146 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'],
142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'],147 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'],
 148 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],
143 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type'],149 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],
144 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],150 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],
145 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml',·1,·'gmx::ExponentialDistribution&lt;·RealType·&gt;::param_type'], 
146 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],151 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'],
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147 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],153 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type']
148 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'], 
149 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'], 
150 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'], 
151 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml#a479bbfe6aea453e1b93fb6c46b2a586a',·1,·'gmx::NormalDistribution::param_type::param_type()'], 
152 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml#a945429fd633cd59c2850bf7cd70d88d5',·1,·'gmx::GammaDistribution::param_type::param_type()'], 
153 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'] 
154 ····]],154 ····]],
155 ····['parameterizedmdruntestfixture_85',·['ParameterizedMdrunTestFixture',·['../classgmx_1_1test_1_1ParameterizedMdrunTestFixture.xhtml',·1,·'gmx::test']]],155 ····['parameterizedmdruntestfixture_85',·['ParameterizedMdrunTestFixture',·['../classgmx_1_1test_1_1ParameterizedMdrunTestFixture.xhtml',·1,·'gmx::test']]],
156 ····['parameters_86',·['parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'Defining·parameters'],156 ····['parameters_86',·['parameters',·['../page_module_selection_custom.xhtml#selmethods_params',·1,·'Defining·parameters'],
157 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pull__rotation_8cpp_03.xhtml#af94b35600673f3744fbf6caec27ac27c',·1,·'gmx::test::anonymous_namespace{pull_rotation.cpp}::Parameters'],157 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pull__rotation_8cpp_03.xhtml#af94b35600673f3744fbf6caec27ac27c',·1,·'gmx::test::anonymous_namespace{pull_rotation.cpp}::Parameters'],
158 ········['../classgmx_1_1QMMMOptions.xhtml#a087e8b86cad35f25abf237869a360434',·1,·'gmx::QMMMOptions::parameters()'],158 ········['../classgmx_1_1QMMMOptions.xhtml#a087e8b86cad35f25abf237869a360434',·1,·'gmx::QMMMOptions::parameters()'],
159 ········['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#adf8f8c60fbcbe9df7463a22e5180056e',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite::parameters'],159 ········['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#adf8f8c60fbcbe9df7463a22e5180056e',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite::parameters'],
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30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],
32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']
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37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],
39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],
40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],40 ····['qmmmoptions_24',·['QMMMOptions',·['../classgmx_1_1QMMMOptions.xhtml',·1,·'gmx']]],
41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],41 ····['qmmmoptions_2ecpp_25',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']42 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
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107 ····['read_5fpull_5fxf_63',·['read_pull_xf',·['../gmx__wham_8cpp.xhtml#a3b6881c8a81744c8faa70b8a461a5cd1',·1,·'gmx_wham.cpp']]],107 ····['read_5fpull_5fxf_63',·['read_pull_xf',·['../gmx__wham_8cpp.xhtml#a3b6881c8a81744c8faa70b8a461a5cd1',·1,·'gmx_wham.cpp']]],
108 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],108 ····['read_5ftpr_5fheader_64',·['read_tpr_header',·['../gmx__wham_8cpp.xhtml#a7722683aae4a7fbeca3de229f7efedab',·1,·'gmx_wham.cpp']]],
109 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],109 ····['read_5ftpr_5fpullxf_5ffiles_65',·['read_tpr_pullxf_files',·['../gmx__wham_8cpp.xhtml#a9adfb4b234ea6645e67a85f6b1503fc5',·1,·'gmx_wham.cpp']]],
110 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],110 ····['read_5fwham_5fin_66',·['read_wham_in',·['../gmx__wham_8cpp.xhtml#a2b227e67bccc413b5352a9011f9dd2ce',·1,·'gmx_wham.cpp']]],
111 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],111 ····['readall_67',·['readAll',·['../classgmx_1_1TextReader.xhtml#a0fe2f628d9f57041bd5c14a712e5c0b1',·1,·'gmx::TextReader']]],
112 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],112 ····['readatomicstructurefactors_68',·['readAtomicStructureFactors',·['../namespacegmx.xhtml#a2a8d393afe70146222257f8bb955b627',·1,·'gmx']]],
113 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],113 ····['readcharbufferfromfile_69',·['readCharBufferFromFile',·['../namespacegmx_1_1anonymous__namespace_02mrcdensitymap_8cpp_03.xhtml#a251ae26a44272d5cd9fcf0f78898d0aa',·1,·'gmx::anonymous_namespace{mrcdensitymap.cpp}']]],
114 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],114 ····['readcheckpoint_70',·['readcheckpoint',·['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],
115 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'],115 ········['../classgmx_1_1VRescaleTemperatureCoupling.xhtml#a90f8b87a5b2b0416bab500aebe63a996',·1,·'gmx::VRescaleTemperatureCoupling::readCheckpoint()'],
116 ········['../classgmx_1_1ITemperatureCouplingImpl.xhtml#a94f280e3751b37b4b109a5ff63054b74',·1,·'gmx::ITemperatureCouplingImpl::readCheckpoint()'],116 ········['../classgmx_1_1BerendsenTemperatureCoupling.xhtml#aa01f54a2056e9aa0a6fa87d52c4d027f',·1,·'gmx::BerendsenTemperatureCoupling::readCheckpoint()'],
117 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()']117 ········['../classgmx_1_1NoseHooverTemperatureCoupling.xhtml#ad15e911e803e015e6473f7c1eb7f281c',·1,·'gmx::NoseHooverTemperatureCoupling::readCheckpoint()']
118 ····]],118 ····]],
119 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],119 ····['readcheckpointdata_71',·['ReadCheckpointData',·['../namespacegmx.xhtml#abd9cf155c3e31c8c699051ad1dea3d3b',·1,·'gmx']]],
120 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],120 ····['readcheckpointdataholder_72',·['ReadCheckpointDataHolder',·['../classgmx_1_1ReadCheckpointDataHolder.xhtml',·1,·'gmx']]],
 121 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'],
121 ····['readcheckpointtotrxframe_73',·['readcheckpointtotrxframe',·['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'],122 ········['../classgmx_1_1ModularSimulator.xhtml#a14f99d57fa6ff26d83990460b8e0e097',·1,·'gmx::ModularSimulator::readCheckpointToTrxFrame()'],
122 ········['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()'],123 ········['../classgmx_1_1StatePropagatorData.xhtml#a333328298283d95aa84be76408da4a7f',·1,·'gmx::StatePropagatorData::readCheckpointToTrxFrame()']
123 ········['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a7dd83b0ad9158a757e111837bc404731',·1,·'gmx::FreeEnergyPerturbationData::readCheckpointToTrxFrame()'] 
124 ····]],124 ····]],
125 ····['readchildentries_74',·['readChildEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a69a563fe5bf6aca78b09435324e5fa06',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],125 ····['readchildentries_74',·['readChildEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#a69a563fe5bf6aca78b09435324e5fa06',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
126 ····['readcommand_75',·['readCommand',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a05320ddc33e42dbdd61c7b87eeca7f4b',·1,·'gmx::ImdSession::Impl']]],126 ····['readcommand_75',·['readCommand',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a05320ddc33e42dbdd61c7b87eeca7f4b',·1,·'gmx::ImdSession::Impl']]],
127 ····['readdouble_76',·['readDouble',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a18e0f91a26a44eba0461f0b29db52b3a',·1,·'gmx::test::TestReferenceChecker']]],127 ····['readdouble_76',·['readDouble',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a18e0f91a26a44eba0461f0b29db52b3a',·1,·'gmx::test::TestReferenceChecker']]],
128 ····['readedvecwithreferenceprojection_77',·['readEdVecWithReferenceProjection',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ac6f9e82412778fba12ba7c87e6be5636',·1,·'anonymous_namespace{edsam.cpp}']]],128 ····['readedvecwithreferenceprojection_77',·['readEdVecWithReferenceProjection',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#ac6f9e82412778fba12ba7c87e6be5636',·1,·'anonymous_namespace{edsam.cpp}']]],
129 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],129 ····['readentry_78',·['readEntry',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata__xml_8cpp_03.xhtml#aff99e1e654b284a758c0a54737bb2171',·1,·'gmx::test::anonymous_namespace{refdata_xml.cpp}']]],
 130 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)'],
130 ····['readfiletostring_79',·['readfiletostring',·['../classgmx_1_1TextReader.xhtml#ab60a4095bedb4918dda1e2071bf36454',·1,·'gmx::TextReader::readFileToString(const·std::filesystem::path·&amp;filename)'],131 ········['../classgmx_1_1TextReader.xhtml#ab60a4095bedb4918dda1e2071bf36454',·1,·'gmx::TextReader::readFileToString(const·std::filesystem::path·&amp;filename)']
131 ········['../classgmx_1_1TextReader.xhtml#a335a497245704967c1431f364ea0ca00',·1,·'gmx::TextReader::readFileToString(const·std::string·&amp;filename)'] 
132 ····]],132 ····]],
133 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],133 ····['readfloat_80',·['readFloat',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0d317c9ca0387d6e6a7bbab7eab5533f',·1,·'gmx::test::TestReferenceChecker']]],
134 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],134 ····['readgridsize_81',·['readGridSize',·['../pme__gather__sycl_8cpp.xhtml#afe2d46ad54be09003ac706146d2c82c1',·1,·'pme_gather_sycl.cpp']]],
135 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],135 ····['readindexfromserializer_82',·['readIndexFromSerializer',·['../namespacegmx_1_1test.xhtml#aea28757b483109810d993d9d1684ad10',·1,·'gmx::test']]],
136 ····['reading_83',·['reading',·['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()'], 
137 ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()']136 ····['reading_83',·['reading',·['../classgmx_1_1FileIOXdrSerializer.xhtml#a7eca6d67ea8bea5006e111762492ca16',·1,·'gmx::FileIOXdrSerializer::reading()'],
 137 ········['../classgmx_1_1ISerializer.xhtml#aa5f04de61828ef7af2c1585e3e91a277',·1,·'gmx::ISerializer::reading()']
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139 ····['readinp_2ecpp_84',·['readinp.cpp',·['../tests_2readinp_8cpp.xhtml',·1,·'']]],139 ····['readinp_2ecpp_84',·['readinp.cpp',·['../tests_2readinp_8cpp.xhtml',·1,·'']]],
140 ····['readint32_85',·['readInt32',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#afee39969b1f4ed1ce509bbd6bd8e9bd9',·1,·'gmx::test::TestReferenceChecker']]],140 ····['readint32_85',·['readInt32',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#afee39969b1f4ed1ce509bbd6bd8e9bd9',·1,·'gmx::test::TestReferenceChecker']]],
141 ····['readint64_86',·['readInt64',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a596176a0591133ef4331185c29cdf9c9',·1,·'gmx::test::TestReferenceChecker']]],141 ····['readint64_86',·['readInt64',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a596176a0591133ef4331185c29cdf9c9',·1,·'gmx::test::TestReferenceChecker']]],
142 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],142 ····['readinteger_87',·['readInteger',·['../classgmx_1_1test_1_1TestReferenceChecker.xhtml#a0202a4ac0d2c52d64122f2f9165341fe',·1,·'gmx::test::TestReferenceChecker']]],
143 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],143 ····['readintegratedautocorrelationtimes_88',·['readIntegratedAutocorrelationTimes',·['../gmx__wham_8cpp.xhtml#a8ddf5450efbad4686970059912aa32d7',·1,·'gmx_wham.cpp']]],
 144 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()'],
144 ····['readinternalparametersfromkvt_89',·['readinternalparametersfromkvt',·['../classgmx_1_1DensityFittingOptions.xhtml#aa1077af7e6cbeba8e1c052f653c45bac',·1,·'gmx::DensityFittingOptions::readInternalParametersFromKvt()'],145 ········['../classgmx_1_1DensityFittingOptions.xhtml#aa1077af7e6cbeba8e1c052f653c45bac',·1,·'gmx::DensityFittingOptions::readInternalParametersFromKvt()'],
145 ········['../classgmx_1_1ColvarsOptions.xhtml#a70d2e05f69165b9126d74813f98f23fd',·1,·'gmx::ColvarsOptions::readInternalParametersFromKvt()'], 
146 ········['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()']146 ········['../classgmx_1_1QMMMOptions.xhtml#a7001a33f3f283c4912a3ab3cfdd5b0f9',·1,·'gmx::QMMMOptions::readInternalParametersFromKvt()']
147 ····]],147 ····]],
148 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],148 ····['readir_2ecpp_90',·['readir.cpp',·['../tests_2readir_8cpp.xhtml',·1,·'']]],
149 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],149 ····['readkvtcheckpointvalue_91',·['readkvtcheckpointvalue',·['../namespacegmx.xhtml#a05084482777d678a18da8a32b7410fba',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·real·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
150 ········['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],150 ········['../namespacegmx.xhtml#acf49b322c7346edb9b5d2e5cbbff100c',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·std::int64_t·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)'],
151 ········['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']151 ········['../namespacegmx.xhtml#a868475d2fdb19a816c1170bd8a7e923f',·1,·'gmx::readKvtCheckpointValue(compat::not_null&lt;·ValueType·*·&gt;·value,·const·std::string·&amp;name,·const·std::string·&amp;identifier,·const·KeyValueTreeObject·&amp;kvt)']
152 ····]],152 ····]],
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 155 ········['../classgmx_1_1StringInputStream.xhtml#a5312438a2d0d1ff527c027a4d7b5181d',·1,·'gmx::StringInputStream::readLine()'],
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 157 ········['../classgmx_1_1TextInputStream.xhtml#addd5947a5b6f6065db02467d8f3c5137',·1,·'gmx::TextInputStream::readLine()']
158 ····]],158 ····]],
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160 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()'],160 ····['readnextframe_94',·['readnextframe',·['../classgmx_1_1test_1_1TrajectoryFrameReader.xhtml#a63117177e0d578d9a15c12db7bb9f680',·1,·'gmx::test::TrajectoryFrameReader::readNextFrame()'],
161 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'],161 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#a518629ed972ceaf34296efab0fa3876e',·1,·'gmx::test::EnergyFrameReader::readNextFrame()'],
162 ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()']162 ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a42ea08dac69a6d50fa38b84ec3ce513e',·1,·'gmx::TrajectoryAnalysisRunnerCommon::readNextFrame()']
163 ····]],163 ····]],
164 ····['readpullcoordselection_95',·['readPullCoordSelection',·['../gmx__wham_8cpp.xhtml#aa2af34b5c91653320b8332bbf308d772',·1,·'gmx_wham.cpp']]],164 ····['readpullcoordselection_95',·['readPullCoordSelection',·['../gmx__wham_8cpp.xhtml#aa2af34b5c91653320b8332bbf308d772',·1,·'gmx_wham.cpp']]],
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40 ····['s_5ftesthardwareenvironmentmutex_25',·['s_testHardwareEnvironmentMutex',·['../namespacegmx_1_1test.xhtml#a6b834beb276d0c5f6be01a97d3f57598',·1,·'gmx::test']]],40 ····['s_5ftesthardwareenvironmentmutex_25',·['s_testHardwareEnvironmentMutex',·['../namespacegmx_1_1test.xhtml#a6b834beb276d0c5f6be01a97d3f57598',·1,·'gmx::test']]],
41 ····['s_5ftprfilenames_26',·['s_tprfilenames',·['../classgmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03_1_1PmeTest.xhtml#a49a63e00b065a5780167186c88d34ddb',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest::s_tprFileNames'],41 ····['s_5ftprfilenames_26',·['s_tprfilenames',·['../classgmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03_1_1PmeTest.xhtml#a49a63e00b065a5780167186c88d34ddb',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::PmeTest::s_tprFileNames'],
42 ········['../classanonymous__namespace_02domain__decomposition_8cpp_03_1_1DomDecSpecialCasesTest.xhtml#a66bb8c54fb6abac1df84fe0c8e335ecc',·1,·'anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest::s_tprFileNames']42 ········['../classanonymous__namespace_02domain__decomposition_8cpp_03_1_1DomDecSpecialCasesTest.xhtml#a66bb8c54fb6abac1df84fe0c8e335ecc',·1,·'anonymous_namespace{domain_decomposition.cpp}::DomDecSpecialCasesTest::s_tprFileNames']
43 ····]],43 ····]],
44 ····['safe_5fexp_27',·['safe_exp',·['../expfit_8cpp.xhtml#a4f061218008fe0f7c1b7fb7bd7c5e44b',·1,·'expfit.cpp']]],44 ····['safe_5fexp_27',·['safe_exp',·['../expfit_8cpp.xhtml#a4f061218008fe0f7c1b7fb7bd7c5e44b',·1,·'expfit.cpp']]],
45 ····['safe_5fexpm1_28',·['safe_expm1',·['../expfit_8cpp.xhtml#a77cdc89d8216490859461a4384c5c37a',·1,·'expfit.cpp']]],45 ····['safe_5fexpm1_28',·['safe_expm1',·['../expfit_8cpp.xhtml#a77cdc89d8216490859461a4384c5c37a',·1,·'expfit.cpp']]],
46 ····['samplecoordandpmf_29',·['sampleCoordAndPmf',·['../classgmx_1_1BiasState.xhtml#a9efc03687d723f2b86e13f5dab31e37a',·1,·'gmx::BiasState']]],46 ····['samplecoordandpmf_29',·['sampleCoordAndPmf',·['../classgmx_1_1BiasState.xhtml#a9efc03687d723f2b86e13f5dab31e37a',·1,·'gmx::BiasState']]],
47 ····['samplecount_30',·['samplecount',·['../classgmx_1_1AnalysisDataAverageModule.xhtml#ae7af25d4cf476d258201aacff89036e9',·1,·'gmx::AnalysisDataAverageModule::sampleCount()'], 
48 ········['../classgmx_1_1AnalysisDataFrameAverager.xhtml#a50b0d6df3ec49b2a75819e4ca3af95d5',·1,·'gmx::AnalysisDataFrameAverager::sampleCount()']47 ····['samplecount_30',·['samplecount',·['../classgmx_1_1AnalysisDataFrameAverager.xhtml#a50b0d6df3ec49b2a75819e4ca3af95d5',·1,·'gmx::AnalysisDataFrameAverager::sampleCount()'],
 48 ········['../classgmx_1_1AnalysisDataAverageModule.xhtml#ae7af25d4cf476d258201aacff89036e9',·1,·'gmx::AnalysisDataAverageModule::sampleCount()']
49 ····]],49 ····]],
50 ····['samplegridsizes_31',·['sampleGridSizes',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ae39438efe09a7f543d05b1bf8c960810',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],50 ····['samplegridsizes_31',·['sampleGridSizes',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ae39438efe09a7f543d05b1bf8c960810',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
51 ····['samplepmf_32',·['samplePmf',·['../classgmx_1_1PointState.xhtml#ac8d8b78b589249e076f4de69de2c5b80',·1,·'gmx::PointState']]],51 ····['samplepmf_32',·['samplePmf',·['../classgmx_1_1PointState.xhtml#ac8d8b78b589249e076f4de69de2c5b80',·1,·'gmx::PointState']]],
52 ····['sampleprobabilityweights_33',·['sampleProbabilityWeights',·['../classgmx_1_1BiasState.xhtml#a791a4e299b421a59352ecd8e742d2930',·1,·'gmx::BiasState']]],52 ····['sampleprobabilityweights_33',·['sampleProbabilityWeights',·['../classgmx_1_1BiasState.xhtml#a791a4e299b421a59352ecd8e742d2930',·1,·'gmx::BiasState']]],
53 ····['samples_34',·['Samples',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fadb8d503322c46d746776ccb54dbb91eb',·1,·'md_enums.h']]],53 ····['samples_34',·['Samples',·['../md__enums_8h.xhtml#a7f23540ff5222f8735be151f3cbd1b2fadb8d503322c46d746776ccb54dbb91eb',·1,·'md_enums.h']]],
54 ····['sampletimestep_5f_35',·['sampleTimeStep_',·['../classgmx_1_1test_1_1FrictionMetricTest.xhtml#a7a3203a2a9c9bcb96402d45c01b335c9',·1,·'gmx::test::FrictionMetricTest']]],54 ····['sampletimestep_5f_35',·['sampleTimeStep_',·['../classgmx_1_1test_1_1FrictionMetricTest.xhtml#a7a3203a2a9c9bcb96402d45c01b335c9',·1,·'gmx::test::FrictionMetricTest']]],
55 ····['sampleumbrellagridpoint_36',·['sampleUmbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a1aa3af22572f99449b840feb0a9c3163',·1,·'gmx::CoordState']]],55 ····['sampleumbrellagridpoint_36',·['sampleUmbrellaGridpoint',·['../classgmx_1_1CoordState.xhtml#a1aa3af22572f99449b840feb0a9c3163',·1,·'gmx::CoordState']]],
56 ····['sampling_20with_20awh_37',·['Accelerating·sampling·with·AWH',·['../page_awh.xhtml#autotoc_md0',·1,·'']]],56 ····['sampling_20with_20awh_37',·['Accelerating·sampling·with·AWH',·['../page_awh.xhtml#autotoc_md0',·1,·'']]],
57 ····['sandrrst_38',·['sandrRst',·['../group__module__onlinehelp.xhtml#ga01e252442e510575079117f8937e8ee4',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],57 ····['sandrrst_38',·['sandrRst',·['../group__module__onlinehelp.xhtml#ga01e252442e510575079117f8937e8ee4',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],
58 ····['sandrtty_39',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],58 ····['sandrtty_39',·['sandrTty',·['../group__module__onlinehelp.xhtml#gae3530d298597983b6376c48e09c63816',·1,·'gmx::anonymous_namespace{helpwritercontext.cpp}']]],
59 ····['sanegridsize_40',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],59 ····['sanegridsize_40',·['saneGridSize',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#ac12a9dbfe8934c0c457c4af83bde4b03',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
60 ····['sanepmeorder_41',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],60 ····['sanepmeorder_41',·['sanePmeOrder',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmebsplinetest_8cpp_03.xhtml#a047f81edad8ec7a240a3152c46618198',·1,·'gmx::test::anonymous_namespace{pmebsplinetest.cpp}']]],
61 ····['sansdebye_42',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye'], 
62 ········['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()']61 ····['sansdebye_42',·['sansdebye',·['../classgmx_1_1SansDebye.xhtml#a0bb2e9276239b93f79d72cdf773e8fa0',·1,·'gmx::SansDebye::SansDebye()'],
 62 ········['../classgmx_1_1SansDebye.xhtml',·1,·'gmx::SansDebye']
63 ····]],63 ····]],
64 ····['sasa_43',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],64 ····['sasa_43',·['Sasa',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1Sasa.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}']]],
65 ····['sasa_2ecpp_44',·['sasa.cpp',·['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],65 ····['sasa_2ecpp_44',·['sasa.cpp',·['../tests_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)'],
66 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']66 ········['../modules_2sasa_8cpp.xhtml',·1,·'(Global·Namespace)']
67 ····]],67 ····]],
68 ····['sasa_2eh_45',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],68 ····['sasa_2eh_45',·['sasa.h',·['../sasa_8h.xhtml',·1,·'']]],
69 ····['sasamoduledata_46',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModuleData()'],69 ····['sasamoduledata_46',·['sasamoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02sasa_8cpp_03_1_1SasaModuleData.xhtml#a2edf401c89ecb50a5154e2b5e1c8a1f9',·1,·'gmx::analysismodules::anonymous_namespace{sasa.cpp}::SasaModuleData::SasaModuleData()'],
Offset 73, 29 lines modifiedOffset 73, 29 lines modified
73 ····['save_5fcalloc_48',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],73 ····['save_5fcalloc_48',·['save_calloc',·['../smalloc_8h.xhtml#af6d73f5ac19d401287ec06c2bbe8b73b',·1,·'smalloc.cpp']]],
74 ····['save_5fcalloc_5faligned_49',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],74 ····['save_5fcalloc_5faligned_49',·['save_calloc_aligned',·['../smalloc_8h.xhtml#a8d03915277e0b152e4d383811d8872e1',·1,·'smalloc.cpp']]],
75 ····['save_5ffree_50',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],75 ····['save_5ffree_50',·['save_free',·['../smalloc_8h.xhtml#a1a8ebd96b293ca1f67b3dd41ff1eb43a',·1,·'smalloc.h']]],
76 ····['save_5ffree_5faligned_51',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],76 ····['save_5ffree_5faligned_51',·['save_free_aligned',·['../smalloc_8h.xhtml#ae35d52a2d595ae960055674b4a0d566a',·1,·'smalloc.h']]],
77 ····['save_5fmalloc_52',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],77 ····['save_5fmalloc_52',·['save_malloc',·['../smalloc_8h.xhtml#a4aa36d45cbe79ee551ea9d2e032be5c7',·1,·'smalloc.cpp']]],
78 ····['save_5fmalloc_5faligned_53',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],78 ····['save_5fmalloc_5faligned_53',·['save_malloc_aligned',·['../smalloc_8h.xhtml#ac9f21a1f7ef12e856e74372d8cb9d233',·1,·'smalloc.cpp']]],
79 ····['save_5frealloc_54',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],79 ····['save_5frealloc_54',·['save_realloc',·['../smalloc_8h.xhtml#af31ca8a44667bdd81e548e75a7b0a31d',·1,·'smalloc.cpp']]],
80 ····['savecheckpointstate_55',·['savecheckpointstate',·['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()'],80 ····['savecheckpointstate_55',·['savecheckpointstate',·['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()'],
 81 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()'],
81 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'],82 ········['../classgmx_1_1EnergyData_1_1Element.xhtml#a955025d3dc2badd068819b0366263f21',·1,·'gmx::EnergyData::Element::saveCheckpointState()'],
 83 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'],
 84 ········['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'],
82 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#aa81f8ca220fe300d1c4ea3aa561c7d4d',·1,·'gmx::ExpandedEnsembleElement::saveCheckpointState()'],85 ········['../classgmx_1_1ExpandedEnsembleElement.xhtml#aa81f8ca220fe300d1c4ea3aa561c7d4d',·1,·'gmx::ExpandedEnsembleElement::saveCheckpointState()'],
83 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a7215fd9b674948475b7a7394a34cf3e9',·1,·'gmx::FirstOrderPressureCoupling::saveCheckpointState()'],86 ········['../classgmx_1_1FirstOrderPressureCoupling.xhtml#a7215fd9b674948475b7a7394a34cf3e9',·1,·'gmx::FirstOrderPressureCoupling::saveCheckpointState()'],
84 ········['../classgmx_1_1VelocityScalingTemperatureCoupling.xhtml#a0613305c51cd85f761021905a7cc6000',·1,·'gmx::VelocityScalingTemperatureCoupling::saveCheckpointState()'], 
85 ········['../classgmx_1_1StatePropagatorData_1_1Element.xhtml#aed73d86e0139c581fb13f5a64c3ac591',·1,·'gmx::StatePropagatorData::Element::saveCheckpointState()'], 
86 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'],87 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#aa845e4a2a85e58b53f868a3bfe74311a',·1,·'gmx::FreeEnergyPerturbationData::Element::saveCheckpointState()'],
87 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()'],88 ········['../group__module__modularsimulator.xhtml#gaa70e5868cd4b8559099c8b687810f8df',·1,·'gmx::ICheckpointHelperClient::saveCheckpointState()'],
 89 ········['../classgmx_1_1ParrinelloRahmanBarostat.xhtml#a6c4ff548b028800659e1e5b01b050cf3',·1,·'gmx::ParrinelloRahmanBarostat::saveCheckpointState()'],
88 ········['../classgmx_1_1MttkData.xhtml#acf983f5ad30b4b8792883b4a69799566',·1,·'gmx::MttkData::saveCheckpointState()'],90 ········['../classgmx_1_1MttkData.xhtml#acf983f5ad30b4b8792883b4a69799566',·1,·'gmx::MttkData::saveCheckpointState()']
89 ········['../classgmx_1_1NoseHooverChainsData.xhtml#af201f4dac2c01518d6a465a1e395d693',·1,·'gmx::NoseHooverChainsData::saveCheckpointState()'], 
90 ········['../classgmx_1_1PullElement.xhtml#acb46bbfd7f683624c4e04585d7151fae',·1,·'gmx::PullElement::saveCheckpointState()'] 
91 ····]],91 ····]],
92 ····['saveedsampointer_56',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],92 ····['saveedsampointer_56',·['saveEdsamPointer',·['../classgmx_1_1Constraints.xhtml#aa20d0b058932c4e3ff6725444de6499f',·1,·'gmx::Constraints']]],
93 ····['saxsdebye_57',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye'], 
94 ········['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()']93 ····['saxsdebye_57',·['saxsdebye',·['../classgmx_1_1SaxsDebye.xhtml#a678e01fbb38f9e7d22bb5bd2efa414b6',·1,·'gmx::SaxsDebye::SaxsDebye()'],
 94 ········['../classgmx_1_1SaxsDebye.xhtml',·1,·'gmx::SaxsDebye']
95 ····]],95 ····]],
96 ····['sbase_58',·['sbase',·['../structgmx__ana__poscalc__t.xhtml#a72b00bc053d3b7b79e594b1b6e5fa733',·1,·'gmx_ana_poscalc_t']]],96 ····['sbase_58',·['sbase',·['../structgmx__ana__poscalc__t.xhtml#a72b00bc053d3b7b79e594b1b6e5fa733',·1,·'gmx_ana_poscalc_t']]],
97 ····['sblock_59',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],97 ····['sblock_59',·['sblock',·['../structgmx_1_1shakedata.xhtml#a119cbdb92204daa557f75d7a14bbeb8c',·1,·'gmx::shakedata']]],
98 ····['sc_60',·['sc',·['../structgmx__sel__lexer__t.xhtml#a82dc052b54870d8ea2770036c241af08',·1,·'gmx_sel_lexer_t']]],98 ····['sc_60',·['sc',·['../structgmx__sel__lexer__t.xhtml#a82dc052b54870d8ea2770036c241af08',·1,·'gmx_sel_lexer_t']]],
99 ····['sc_5f_61',·['sc_',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a7ce70ac756fedffc234e93074714b732',·1,·'gmx::SelectionCollection::Impl']]],99 ····['sc_5f_61',·['sc_',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a7ce70ac756fedffc234e93074714b732',·1,·'gmx::SelectionCollection::Impl']]],
100 ····['sc_5falwaysfalse_62',·['sc_alwaysFalse',·['../naming_8h.xhtml#afbb8029e01b2ffea1e35dd15e991cd7b',·1,·'gmx::test::detail']]],100 ····['sc_5falwaysfalse_62',·['sc_alwaysFalse',·['../naming_8h.xhtml#afbb8029e01b2ffea1e35dd15e991cd7b',·1,·'gmx::test::detail']]],
101 ····['sc_5fatominfo_5fenergygroupidmask_63',·['sc_atomInfo_EnergyGroupIdMask',·['../namespacegmx.xhtml#aec7dc2c9588cef82954ea1a7a5bbcdcf',·1,·'gmx']]],101 ····['sc_5fatominfo_5fenergygroupidmask_63',·['sc_atomInfo_EnergyGroupIdMask',·['../namespacegmx.xhtml#aec7dc2c9588cef82954ea1a7a5bbcdcf',·1,·'gmx']]],
Offset 130, 61 lines modifiedOffset 130, 61 lines modified
130 ····['sc_5fisgpupairlisttype_90',·['sc_isGpuPairListType',·['../namespacegmx.xhtml#a537d842a3c66578a076f668694f11319',·1,·'gmx']]],130 ····['sc_5fisgpupairlisttype_90',·['sc_isGpuPairListType',·['../namespacegmx.xhtml#a537d842a3c66578a076f668694f11319',·1,·'gmx']]],
131 ····['sc_5fjclustersize_91',·['sc_jClusterSize',·['../namespacegmx.xhtml#a858c5384b6739a1bd6989e44f942b5fc',·1,·'gmx']]],131 ····['sc_5fjclustersize_91',·['sc_jClusterSize',·['../namespacegmx.xhtml#a858c5384b6739a1bd6989e44f942b5fc',·1,·'gmx']]],
132 ····['sc_5flayouttype_92',·['sc_layoutType',·['../namespacegmx.xhtml#af1c005d1c11ecc155592ef473cc832ee',·1,·'gmx']]],132 ····['sc_5flayouttype_92',·['sc_layoutType',·['../namespacegmx.xhtml#af1c005d1c11ecc155592ef473cc832ee',·1,·'gmx']]],
133 ····['sc_5fmaxdonorsperresidue_93',·['sc_maxDonorsPerResidue',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1ResInfo.xhtml#a295e4dc2a8943f881df3febe63b6572f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo']]],133 ····['sc_5fmaxdonorsperresidue_93',·['sc_maxDonorsPerResidue',·['../structgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1ResInfo.xhtml#a295e4dc2a8943f881df3febe63b6572f',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::ResInfo']]],
134 ····['sc_5fmaxnumizones_94',·['sc_maxNumIZones',·['../namespacegmx.xhtml#ad29c98a8ee43ed2ed812f11630f96a62',·1,·'gmx']]],134 ····['sc_5fmaxnumizones_94',·['sc_maxNumIZones',·['../namespacegmx.xhtml#ad29c98a8ee43ed2ed812f11630f96a62',·1,·'gmx']]],
135 ····['sc_5fmaxnumzones_95',·['sc_maxNumZones',·['../namespacegmx.xhtml#a5e13c275f97165673749dc10651d0403',·1,·'gmx']]],135 ····['sc_5fmaxnumzones_95',·['sc_maxNumZones',·['../namespacegmx.xhtml#a5e13c275f97165673749dc10651d0403',·1,·'gmx']]],
136 ····['sc_5fncolvarsatomsname_5f_96',·['sc_nColvarsAtomsName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#ac0a5afaf0b4b6ab472ce670fb17acd1e',·1,·'gmx::ColvarsForceProviderState']]],136 ····['sc_5fncolvarsatomsname_5f_96',·['sc_nColvarsAtomsName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#ac0a5afaf0b4b6ab472ce670fb17acd1e',·1,·'gmx::ColvarsForceProviderState']]],
 137 ····['sc_5fnumenergygroups_97',·['sc_numenergygroups',·['../structgmx_1_1test_1_1TestSystem.xhtml#a6a0f14e33f368f96c0f3c4128e3c3f2c',·1,·'gmx::test::TestSystem::sc_numEnergyGroups'],
137 ····['sc_5fnumenergygroups_97',·['sc_numenergygroups',·['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ad47ab0f836918e5019cfc367f1efbda3',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::sc_numEnergyGroups'],138 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ad47ab0f836918e5019cfc367f1efbda3',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::sc_numEnergyGroups']
138 ········['../structgmx_1_1test_1_1TestSystem.xhtml#a6a0f14e33f368f96c0f3c4128e3c3f2c',·1,·'gmx::test::TestSystem::sc_numEnergyGroups'] 
139 ····]],139 ····]],
140 ····['sc_5fnumfepstates_98',·['sc_numFepStates',·['../pme__gpu__staging_8h.xhtml#a1b46330c0160a5539685afd05ae865c3',·1,·'pme_gpu_staging.h']]],140 ····['sc_5fnumfepstates_98',·['sc_numFepStates',·['../pme__gpu__staging_8h.xhtml#a1b46330c0160a5539685afd05ae865c3',·1,·'pme_gpu_staging.h']]],
141 ····['sc_5fnumgridsljlb_99',·['sc_numGridsLJLB',·['../pme__internal_8h.xhtml#afae6cc23490d753bc9f480193607a2bd',·1,·'pme_internal.h']]],141 ····['sc_5fnumgridsljlb_99',·['sc_numGridsLJLB',·['../pme__internal_8h.xhtml#afae6cc23490d753bc9f480193607a2bd',·1,·'pme_internal.h']]],
142 ····['sc_5fpressurematrixtypenames_100',·['sc_pressureMatrixTypeNames',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#ad8d195071fbeafd96f845f9bd83ddf5f',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],142 ····['sc_5fpressurematrixtypenames_100',·['sc_pressureMatrixTypeNames',·['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#ad8d195071fbeafd96f845f9bd83ddf5f',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
143 ····['sc_5frefdatafilenamemaker_101',·['sc_refDataFilenameMaker',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a612cdac13c1c842588ae6f765b4c8158',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}']]],143 ····['sc_5frefdatafilenamemaker_101',·['sc_refDataFilenameMaker',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a612cdac13c1c842588ae6f765b4c8158',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}']]],
144 ····['sc_5fskewnessmargin_102',·['sc_skewnessMargin',·['../pbc_8cpp.xhtml#a01ddfce19291b0878ba36bd9285a1e9d',·1,·'pbc.cpp']]],144 ····['sc_5fskewnessmargin_102',·['sc_skewnessMargin',·['../pbc_8cpp.xhtml#a01ddfce19291b0878ba36bd9285a1e9d',·1,·'pbc.cpp']]],
145 ····['sc_5fsubgroupsize_103',·['sc_subGroupSize',·['../pme__gpu__grid__sycl_8cpp.xhtml#a3bb4a447d7735630217c8d9b6a5e1963',·1,·'pme_gpu_grid_sycl.cpp']]],145 ····['sc_5fsubgroupsize_103',·['sc_subGroupSize',·['../pme__gpu__grid__sycl_8cpp.xhtml#a3bb4a447d7735630217c8d9b6a5e1963',·1,·'pme_gpu_grid_sycl.cpp']]],
146 ····['sc_5ftestnamer_104',·['sc_testnamer',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a85a4f7592d748dfd59373117e51fc599',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::sc_testNamer'],146 ····['sc_5ftestnamer_104',·['sc_testnamer',·['../namespacegmx_1_1test_1_1anonymous__namespace_02fft_8cpp_03.xhtml#ae605e2033e55af3de3a80361023cc5a3',·1,·'gmx::test::anonymous_namespace{fft.cpp}::sc_testNamer'],
147 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a144cb9000ebc841c25d100cb1b45b6f7',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}::sc_testNamer'],147 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03.xhtml#a144cb9000ebc841c25d100cb1b45b6f7',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}::sc_testNamer'],
148 ········['../namespaceanonymous__namespace_02domain__decomposition_8cpp_03.xhtml#ad95f6319037d8f945235ebf0831ccba3',·1,·'anonymous_namespace{domain_decomposition.cpp}::sc_testNamer'],148 ········['../namespaceanonymous__namespace_02domain__decomposition_8cpp_03.xhtml#ad95f6319037d8f945235ebf0831ccba3',·1,·'anonymous_namespace{domain_decomposition.cpp}::sc_testNamer'],
149 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02fft_8cpp_03.xhtml#ae605e2033e55af3de3a80361023cc5a3',·1,·'gmx::test::anonymous_namespace{fft.cpp}::sc_testNamer']149 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#a85a4f7592d748dfd59373117e51fc599',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::sc_testNamer']
150 ····]],150 ····]],
151 ····['sc_5fworkgroupsize_105',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],151 ····['sc_5fworkgroupsize_105',·['sc_workGroupSize',·['../namespacegmx.xhtml#ac85e48554e6e1788ea930b7064d371a6',·1,·'gmx']]],
152 ····['sc_5fxoldwholename_5f_106',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],152 ····['sc_5fxoldwholename_5f_106',·['sc_xOldWholeName_',·['../structgmx_1_1ColvarsForceProviderState.xhtml#a4ae85de69074dadd19c5fc012a3cccc8',·1,·'gmx::ColvarsForceProviderState']]],
153 ····['sc_5fxstride_107',·['sc_xStride',·['../namespacegmx.xhtml#a56bd008a3e40cc25b83bc1196e150ea9',·1,·'gmx']]],153 ····['sc_5fxstride_107',·['sc_xStride',·['../namespacegmx.xhtml#a56bd008a3e40cc25b83bc1196e150ea9',·1,·'gmx']]],
154 ····['scalar_2eh_108',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],154 ····['scalar_2eh_108',·['scalar.h',·['../scalar_8h.xhtml',·1,·'']]],
155 ····['scalar_5fmath_2eh_109',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],155 ····['scalar_5fmath_2eh_109',·['scalar_math.h',·['../scalar__math_8h.xhtml',·1,·'']]],
156 ····['scalar_5futil_2eh_110',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],156 ····['scalar_5futil_2eh_110',·['scalar_util.h',·['../scalar__util_8h.xhtml',·1,·'']]],
157 ····['scalardatatypes_111',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],157 ····['scalardatatypes_111',·['ScalarDataTypes',·['../structScalarDataTypes.xhtml',·1,·'']]],
158 ····['scalarforce_112',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],158 ····['scalarforce_112',·['scalarForce',·['../structpull__coord__work__t.xhtml#adde522794352e2ebc796944dcda04204',·1,·'pull_coord_work_t']]],
 159 ····['scale_113',·['scale',·['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale'],
159 ····['scale_113',·['scale',·['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale'],160 ········['../structPmeGpuDynamicParams.xhtml#a5c019da79bddcfb0ac07f2a757a269bc',·1,·'PmeGpuDynamicParams::scale'],
160 ········['../structt__forcetable.xhtml#a74042b613c0660e9d1a66b49147d0159',·1,·'t_forcetable::scale'], 
161 ········['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()']161 ········['../classgmx_1_1MttkData.xhtml#aa587cc1c76049dce893923692e23d769',·1,·'gmx::MttkData::scale()']
162 ····]],162 ····]],
163 ····['scaleall_114',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],163 ····['scaleall_114',·['scaleAll',·['../classgmx_1_1AbstractAverageHistogram.xhtml#a749915682fa7728ee088dfd6726b1736',·1,·'gmx::AbstractAverageHistogram']]],
164 ····['scaleallbyvector_115',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],164 ····['scaleallbyvector_115',·['scaleAllByVector',·['../classgmx_1_1AbstractAverageHistogram.xhtml#aabe3becd12550d662e727afbd168f433',·1,·'gmx::AbstractAverageHistogram']]],
165 ····['scalebox_116',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],165 ····['scalebox_116',·['scaleBox',·['../classEwaldBoxZScaler.xhtml#a67431757f83b309cf81b3cf96eabe7bf',·1,·'EwaldBoxZScaler']]],
166 ····['scalebyvector_117',·['scaleByVector',·['../namespacegmx.xhtml#a0f5022a3da3a90ab52ba2cec11c936d5',·1,·'gmx']]],166 ····['scalebyvector_117',·['scaleByVector',·['../namespacegmx.xhtml#a0f5022a3da3a90ab52ba2cec11c936d5',·1,·'gmx']]],
167 ····['scalecoordinates_118',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],167 ····['scalecoordinates_118',·['scaleCoordinates',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a9376d1cbbecb20c18661950973814d0d',·1,·'gmx::UpdateConstrainGpu::Impl']]],
168 ····['scaled_5flagrange_5fmultiplier_119',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],168 ····['scaled_5flagrange_5fmultiplier_119',·['scaled_lagrange_multiplier',·['../structgmx_1_1shakedata.xhtml#adde8f58fcb5ada8d634039c00ca42a58',·1,·'gmx::shakedata']]],
169 ····['scaledsampleweight_120',·['ScaledSampleWeight',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a7cffc85b2f1c2177a818913479ea4f18',·1,·'gmx']]],169 ····['scaledsampleweight_120',·['ScaledSampleWeight',·['../namespacegmx.xhtml#aa78c6481d10a93316c155ffdf021e581a7cffc85b2f1c2177a818913479ea4f18',·1,·'gmx']]],
170 ····['scaleinternaltouserinput_121',·['scaleInternalToUserInput',·['../structgmx_1_1DimParams.xhtml#a8b7199033caa1dbea6f4fbc8457c3103',·1,·'gmx::DimParams']]],170 ····['scaleinternaltouserinput_121',·['scaleInternalToUserInput',·['../structgmx_1_1DimParams.xhtml#a8b7199033caa1dbea6f4fbc8457c3103',·1,·'gmx::DimParams']]],
171 ····['scalekernel_122',·['scaleKernel',·['../namespacegmx.xhtml#a3478a6cdaf4905d5f1939a1cc0f7672c',·1,·'gmx']]],171 ····['scalekernel_122',·['scaleKernel',·['../namespacegmx.xhtml#a3478a6cdaf4905d5f1939a1cc0f7672c',·1,·'gmx']]],
172 ····['scaleoperationonly_123',·['scaleOperationOnly',·['../classgmx_1_1TranslateAndScale.xhtml#acc95c4510196adaa2be2e247eaa400a6',·1,·'gmx::TranslateAndScale']]],172 ····['scaleoperationonly_123',·['scaleOperationOnly',·['../classgmx_1_1TranslateAndScale.xhtml#acc95c4510196adaa2be2e247eaa400a6',·1,·'gmx::TranslateAndScale']]],
173 ····['scalepositions_124',·['scalepositions',·['../namespacegmx.xhtml#aa40466eed05791a3c070a9620d0118a5',·1,·'gmx::scalePositions(int·a,·real·lambda,·rvec·*gmx_restrict·x)'], 
174 ········['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a0ad0cca109a60ba3ddbe1df8f32d19ba',·1,·'gmx::ScalePositions']173 ····['scalepositions_124',·['scalepositions',·['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a0ad0cca109a60ba3ddbe1df8f32d19ba',·1,·'gmx::ScalePositions'],
 174 ········['../namespacegmx.xhtml#aa40466eed05791a3c070a9620d0118a5',·1,·'gmx::scalePositions(int·a,·real·lambda,·rvec·*gmx_restrict·x)']
175 ····]],175 ····]],
176 ····['scalesingle_125',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],176 ····['scalesingle_125',·['scaleSingle',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abb37138b6fef236b38b46177ab3a7f16',·1,·'gmx::AbstractAverageHistogram']]],
177 ····['scaletarget_126',·['scaleTarget',·['../classgmx_1_1PointState.xhtml#a93751c7f51be9d69545a30ce189bffc2',·1,·'gmx::PointState']]],177 ····['scaletarget_126',·['scaleTarget',·['../classgmx_1_1PointState.xhtml#a93751c7f51be9d69545a30ce189bffc2',·1,·'gmx::PointState']]],
178 ····['scaletargetbymetric_127',·['scaleTargetByMetric',·['../classgmx_1_1BiasParams.xhtml#ad9bd18c9c3bb06a0a31ae993dc420eba',·1,·'gmx::BiasParams']]],178 ····['scaletargetbymetric_127',·['scaleTargetByMetric',·['../classgmx_1_1BiasParams.xhtml#ad9bd18c9c3bb06a0a31ae993dc420eba',·1,·'gmx::BiasParams']]],
179 ····['scaleuserinputtointernal_128',·['scaleUserInputToInternal',·['../structgmx_1_1DimParams.xhtml#a004d2c59395c40d1600fcfecde06de49',·1,·'gmx::DimParams']]],179 ····['scaleuserinputtointernal_128',·['scaleUserInputToInternal',·['../structgmx_1_1DimParams.xhtml#a004d2c59395c40d1600fcfecde06de49',·1,·'gmx::DimParams']]],
180 ····['scalevelocities_129',·['scalevelocities',·['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a2108282211446e168416bdfc55bbbda1',·1,·'gmx::ScaleVelocities'],180 ····['scalevelocities_129',·['scalevelocities',·['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a92ef8227ecb881d5a8f7fd2b3882afe3',·1,·'gmx::UpdateConstrainGpu::Impl::scaleVelocities()'],
 181 ········['../namespacegmx.xhtml#a4e4da4f100aca65e4733c6fe8e881a45',·1,·'gmx::scaleVelocities(int·a,·real·lambda,·rvec·*gmx_restrict·v)'],
181 ········['../group__module__modularsimulator.xhtml#ga5ff057aa36da97961cf549a2d15d0a1d',·1,·'gmx::ScaleVelocities'],182 ········['../group__module__modularsimulator.xhtml#ga5ff057aa36da97961cf549a2d15d0a1d',·1,·'gmx::ScaleVelocities'],
 183 ········['../group__module__modularsimulator.xhtml#gga93e79323b6317b2185ad6613a20fa290a2108282211446e168416bdfc55bbbda1',·1,·'gmx::ScaleVelocities']
182 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a92ef8227ecb881d5a8f7fd2b3882afe3',·1,·'gmx::UpdateConstrainGpu::Impl::scaleVelocities()'], 
183 ········['../namespacegmx.xhtml#a4e4da4f100aca65e4733c6fe8e881a45',·1,·'gmx::scaleVelocities(int·a,·real·lambda,·rvec·*gmx_restrict·v)'] 
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79 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],79 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#abb053676a2ca8ed4f5a9908bc70f25a7',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(result_type·mean=0.0,·result_type·stddev=1.0)'],
80 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(const·param_type·&amp;param)']80 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#ad090e6c16ba8f5b3a5408d8c07788dd3',·1,·'gmx::TabulatedNormalDistribution::TabulatedNormalDistribution(const·param_type·&amp;param)']
81 ····]],81 ····]],
82 ····['tabulatednormaldistribution_2ecpp_60',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],82 ····['tabulatednormaldistribution_2ecpp_60',·['tabulatednormaldistribution.cpp',·['../tests_2tabulatednormaldistribution_8cpp.xhtml',·1,·'']]],
83 ····['tabulatednormaldistribution_2eh_61',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],83 ····['tabulatednormaldistribution_2eh_61',·['tabulatednormaldistribution.h',·['../tabulatednormaldistribution_8h.xhtml',·1,·'']]],
84 ····['tabulatestructurefactors_62',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],84 ····['tabulatestructurefactors_62',·['tabulateStructureFactors',·['../ewald_8cpp.xhtml#aa3544b10e91b5c8dcfa5a114a5bc5a96',·1,·'ewald.cpp']]],
85 ····['tag_63',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],85 ····['tag_63',·['tag',·['../group__module__modularsimulator.xhtml#ga049d88cc31c3267253efbde42699ad28',·1,·'gmx::PropagatorConnection']]],
 86 ····['tan_64',·['tan',·['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)'],
86 ····['tan_64',·['tan',·['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)'],87 ········['../namespacegmx.xhtml#a45e727a4960ac7f8ba5149f9b251c520',·1,·'gmx::tan(double·x)']
87 ········['../namespacegmx.xhtml#a7063173231453ec737688c8d91aa0749',·1,·'gmx::tan(float·x)'] 
88 ····]],88 ····]],
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34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],
37 ········['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']
38 ····]],38 ····]],
39 ····['unit_23',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'],39 ····['unit_23',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'],
40 ········['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit']40 ········['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit']
41 ····]],41 ····]],
 42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'],
42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()'],43 ········['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()']
43 ········['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'] 
44 ····]],44 ····]],
45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],
51 ····['unitvector_31',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'],51 ····['unitvector_31',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'],
52 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']52 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']
53 ····]],53 ····]],
54 ····['unity_32',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],54 ····['unity_32',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
55 ····['unknown_33',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],55 ····['unknown_33',·['unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'],
56 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],56 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
57 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown']57 ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown']
58 ····]],58 ····]],
59 ····['unpackandaddhalointernal_34',·['UnpackAndAddHaloInternal',·['../classUnpackAndAddHaloInternal.xhtml',·1,·'']]],59 ····['unpackandaddhalointernal_34',·['UnpackAndAddHaloInternal',·['../classUnpackAndAddHaloInternal.xhtml',·1,·'']]],
60 ····['unpackhaloexternal_35',·['UnpackHaloExternal',·['../classUnpackHaloExternal.xhtml',·1,·'']]],60 ····['unpackhaloexternal_35',·['UnpackHaloExternal',·['../classUnpackHaloExternal.xhtml',·1,·'']]],
61 ····['unpackrecvbufkernel_36',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],61 ····['unpackrecvbufkernel_36',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
62 ····['unpaddedarrayref_37',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],62 ····['unpaddedarrayref_37',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
63 ····['unpaddedconstarrayref_38',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],63 ····['unpaddedconstarrayref_38',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
64 ····['unset_39',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],64 ····['unset_39',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
65 ····['unsignedchartostring_40',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],65 ····['unsignedchartostring_40',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
66 ····['update_41',·['update',·['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'], 
67 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],66 ····['update_41',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],
68 ········['../structgmx__ana__selmethod__t.xhtml#a18d9fe0bff35116b4e12cc63c381fb47',·1,·'gmx_ana_selmethod_t::update'],67 ········['../structgmx__ana__selmethod__t.xhtml#a18d9fe0bff35116b4e12cc63c381fb47',·1,·'gmx_ana_selmethod_t::update'],
69 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()']68 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
 69 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update']
70 ····]],70 ····]],
71 ····['update_5fconstrain_5fgpu_2eh_42',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],71 ····['update_5fconstrain_5fgpu_2eh_42',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],
72 ····['update_5fconstrain_5fgpu_5fimpl_2ecpp_43',·['update_constrain_gpu_impl.cpp',·['../update__constrain__gpu__impl_8cpp.xhtml',·1,·'']]],72 ····['update_5fconstrain_5fgpu_5fimpl_2ecpp_43',·['update_constrain_gpu_impl.cpp',·['../update__constrain__gpu__impl_8cpp.xhtml',·1,·'']]],
73 ····['update_5fconstrain_5fgpu_5fimpl_2eh_44',·['update_constrain_gpu_impl.h',·['../update__constrain__gpu__impl_8h.xhtml',·1,·'']]],73 ····['update_5fconstrain_5fgpu_5fimpl_2eh_44',·['update_constrain_gpu_impl.h',·['../update__constrain__gpu__impl_8h.xhtml',·1,·'']]],
74 ····['update_5fconstrain_5fgpu_5fimpl_5fstubs_2ecpp_45',·['update_constrain_gpu_impl_stubs.cpp',·['../update__constrain__gpu__impl__stubs_8cpp.xhtml',·1,·'']]],74 ····['update_5fconstrain_5fgpu_5fimpl_5fstubs_2ecpp_45',·['update_constrain_gpu_impl_stubs.cpp',·['../update__constrain__gpu__impl__stubs_8cpp.xhtml',·1,·'']]],
75 ····['update_5fconstrain_5fgpu_5finternal_2eh_46',·['update_constrain_gpu_internal.h',·['../update__constrain__gpu__internal_8h.xhtml',·1,·'']]],75 ····['update_5fconstrain_5fgpu_5finternal_2eh_46',·['update_constrain_gpu_internal.h',·['../update__constrain__gpu__internal_8h.xhtml',·1,·'']]],
76 ····['update_5fconstrain_5fgpu_5finternal_5fsycl_2ecpp_47',·['update_constrain_gpu_internal_sycl.cpp',·['../update__constrain__gpu__internal__sycl_8cpp.xhtml',·1,·'']]],76 ····['update_5fconstrain_5fgpu_5finternal_5fsycl_2ecpp_47',·['update_constrain_gpu_internal_sycl.cpp',·['../update__constrain__gpu__internal__sycl_8cpp.xhtml',·1,·'']]],
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Offset 342, 26 lines modifiedOffset 342, 26 lines modified
342 ····['addwithcoupled_212',·['addWithCoupled',·['../namespacegmx.xhtml#a71dab7360755dfa64ab2b9ecae2b50a7',·1,·'gmx']]],342 ····['addwithcoupled_212',·['addWithCoupled',·['../namespacegmx.xhtml#a71dab7360755dfa64ab2b9ecae2b50a7',·1,·'gmx']]],
343 ····['adjustatominformation_213',·['adjustAtomInformation',·['../namespacegmx.xhtml#a275fd149ededf268fc7ffaf9c7fd9a8b',·1,·'gmx']]],343 ····['adjustatominformation_213',·['adjustAtomInformation',·['../namespacegmx.xhtml#a275fd149ededf268fc7ffaf9c7fd9a8b',·1,·'gmx']]],
344 ····['adjustfromsettings_214',·['adjustFromSettings',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#a5471ae98e9950ceb6cf2ece11ba5c130',·1,·'gmx::CommandLineCommonOptionsHolder']]],344 ····['adjustfromsettings_214',·['adjustFromSettings',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#a5471ae98e9950ceb6cf2ece11ba5c130',·1,·'gmx::CommandLineCommonOptionsHolder']]],
345 ····['adjustinputrecbasedonmodules_215',·['adjustInputrecBasedOnModules',·['../classgmx_1_1MDModules.xhtml#a17a16c8f62f862f88627b20f280f740d',·1,·'gmx::MDModules']]],345 ····['adjustinputrecbasedonmodules_215',·['adjustInputrecBasedOnModules',·['../classgmx_1_1MDModules.xhtml#a17a16c8f62f862f88627b20f280f740d',·1,·'gmx::MDModules']]],
346 ····['adjustkeyvaluetreefromoptions_216',·['adjustKeyValueTreeFromOptions',·['../group__module__options.xhtml#ga4ff33b942520181157f23d0204fde157',·1,·'gmx']]],346 ····['adjustkeyvaluetreefromoptions_216',·['adjustKeyValueTreeFromOptions',·['../group__module__options.xhtml#ga4ff33b942520181157f23d0204fde157',·1,·'gmx']]],
347 ····['adl_5fp_217',·['ADL_P',·['../device__management__sycl__intel__device__ids_8cpp.xhtml#a2cbf4ef8d324a75842da95cf157ad662a60e8f3442024c1d700d929d41071f9fa',·1,·'device_management_sycl_intel_device_ids.cpp']]],347 ····['adl_5fp_217',·['ADL_P',·['../device__management__sycl__intel__device__ids_8cpp.xhtml#a2cbf4ef8d324a75842da95cf157ad662a60e8f3442024c1d700d929d41071f9fa',·1,·'device_management_sycl_intel_device_ids.cpp']]],
348 ····['advancepointinsubgrid_218',·['advancePointInSubgrid',·['../namespacegmx.xhtml#a796a4671abfe96e1c695934237ba1af1',·1,·'gmx']]],348 ····['advancepointinsubgrid_218',·['advancePointInSubgrid',·['../namespacegmx.xhtml#a796a4671abfe96e1c695934237ba1af1',·1,·'gmx']]],
 349 ····['affinetransformation_219',·['affinetransformation',·['../classgmx_1_1AffineTransformation.xhtml',·1,·'gmx::AffineTransformation'],
349 ····['affinetransformation_219',·['affinetransformation',·['../classgmx_1_1AffineTransformation.xhtml#a9e6d3f723c477ac3d32c10fda33d0b47',·1,·'gmx::AffineTransformation::AffineTransformation()'],350 ········['../classgmx_1_1AffineTransformation.xhtml#a9e6d3f723c477ac3d32c10fda33d0b47',·1,·'gmx::AffineTransformation::AffineTransformation()']
350 ········['../classgmx_1_1AffineTransformation.xhtml',·1,·'gmx::AffineTransformation'] 
351 ····]],351 ····]],
352 ····['after_20compilation_220',·['Element·tree·after·compilation',·['../page_module_selection_compiler.xhtml#selcompiler_tree',·1,·'']]],352 ····['after_20compilation_220',·['Element·tree·after·compilation',·['../page_module_selection_compiler.xhtml#selcompiler_tree',·1,·'']]],
 353 ····['afterfrom_221',·['afterfrom',·['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom&lt;·FromType·&gt;'],
353 ····['afterfrom_221',·['afterfrom',·['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml#a2ab97b38dd624b519ab260f18c65f6e6',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom::AfterFrom()'],354 ········['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml#a2ab97b38dd624b519ab260f18c65f6e6',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom::AfterFrom()']
354 ········['../classgmx_1_1KeyValueTreeTransformRuleBuilder_1_1AfterFrom.xhtml',·1,·'gmx::KeyValueTreeTransformRuleBuilder::AfterFrom&lt;·FromType·&gt;'] 
355 ····]],355 ····]],
356 ····['against_20tt_20libgromacs_20tt_222',·['Linking·against·&lt;tt&gt;libgromacs&lt;/tt&gt;',·['../page_usinglibrary.xhtml#autotoc_md103',·1,·'']]],356 ····['against_20tt_20libgromacs_20tt_222',·['Linking·against·&lt;tt&gt;libgromacs&lt;/tt&gt;',·['../page_usinglibrary.xhtml#autotoc_md103',·1,·'']]],
357 ····['ai_223',·['ai',·['../classInteractionOfType.xhtml#aea9e0f61528c3026b34a0c304d4a2422',·1,·'InteractionOfType::ai()'], 
358 ········['../structBondedInteraction.xhtml#a39089dc69980e84281a0dc1069a4cd12',·1,·'BondedInteraction::ai()'], 
359 ········['../structMoleculePatch.xhtml#a961bb46d8143f2398991f6575fd74cca',·1,·'MoleculePatch::ai()'],357 ····['ai_223',·['ai',·['../structMoleculePatch.xhtml#a961bb46d8143f2398991f6575fd74cca',·1,·'MoleculePatch::ai()'],
360 ········['../classVsiteBondedInteraction.xhtml#a757d62f6874409547ef7004bb96e0504',·1,·'VsiteBondedInteraction::ai()']358 ········['../classVsiteBondedInteraction.xhtml#a757d62f6874409547ef7004bb96e0504',·1,·'VsiteBondedInteraction::ai()'],
 359 ········['../classInteractionOfType.xhtml#aea9e0f61528c3026b34a0c304d4a2422',·1,·'InteractionOfType::ai()'],
 360 ········['../structBondedInteraction.xhtml#a39089dc69980e84281a0dc1069a4cd12',·1,·'BondedInteraction::ai()·const']
361 ····]],361 ····]],
362 ····['aj_224',·['aj',·['../structBondedInteraction.xhtml#a4bfdecec47ae9a83646e84c7dc80d23b',·1,·'BondedInteraction::aj()'],362 ····['aj_224',·['aj',·['../structBondedInteraction.xhtml#a4bfdecec47ae9a83646e84c7dc80d23b',·1,·'BondedInteraction::aj()'],
363 ········['../structMoleculePatch.xhtml#a58d5316b7fb00498ea1e51256b043b1e',·1,·'MoleculePatch::aj()']363 ········['../structMoleculePatch.xhtml#a58d5316b7fb00498ea1e51256b043b1e',·1,·'MoleculePatch::aj()']
364 ····]],364 ····]],
365 ····['ak_225',·['ak',·['../structBondedInteraction.xhtml#a4ec2b156b8544115dfe2848a5dc16b1e',·1,·'BondedInteraction::ak()'],365 ····['ak_225',·['ak',·['../structBondedInteraction.xhtml#a4ec2b156b8544115dfe2848a5dc16b1e',·1,·'BondedInteraction::ak()'],
366 ········['../structMoleculePatch.xhtml#aca196338c459bf579c7b9f77c567f17a',·1,·'MoleculePatch::ak()']366 ········['../structMoleculePatch.xhtml#aca196338c459bf579c7b9f77c567f17a',·1,·'MoleculePatch::ak()']
367 ····]],367 ····]],
Offset 888, 41 lines modifiedOffset 888, 41 lines modified
888 ····['arrayrefwithpadding_2eh_516',·['arrayrefwithpadding.h',·['../arrayrefwithpadding_8h.xhtml',·1,·'']]],888 ····['arrayrefwithpadding_2eh_516',·['arrayrefwithpadding.h',·['../arrayrefwithpadding_8h.xhtml',·1,·'']]],
889 ····['arrayrefwithpadding_3c_20gmx_3a_3abasicvector_20_3e_517',·['ArrayRefWithPadding&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ArrayRefWithPadding.xhtml',·1,·'gmx']]],889 ····['arrayrefwithpadding_3c_20gmx_3a_3abasicvector_20_3e_517',·['ArrayRefWithPadding&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ArrayRefWithPadding.xhtml',·1,·'gmx']]],
890 ····['arraysize_2eh_518',·['arraysize.h',·['../arraysize_8h.xhtml',·1,·'']]],890 ····['arraysize_2eh_518',·['arraysize.h',·['../arraysize_8h.xhtml',·1,·'']]],
891 ····['arraytype_519',·['arrayType',·['../structgmx_1_1PlanSetupData.xhtml#aa6392db2e4f96a2530d516427eae240d',·1,·'gmx::PlanSetupData']]],891 ····['arraytype_519',·['arrayType',·['../structgmx_1_1PlanSetupData.xhtml#aa6392db2e4f96a2530d516427eae240d',·1,·'gmx::PlanSetupData']]],
892 ····['arrivewaitbarrierval_5f_520',·['arriveWaitBarrierVal_',·['../structgmx_1_1nvshmemHaloExchangeOps.xhtml#ac73ed126de2b4132ff822c8fb68be92c',·1,·'gmx::nvshmemHaloExchangeOps']]],892 ····['arrivewaitbarrierval_5f_520',·['arriveWaitBarrierVal_',·['../structgmx_1_1nvshmemHaloExchangeOps.xhtml#ac73ed126de2b4132ff822c8fb68be92c',·1,·'gmx::nvshmemHaloExchangeOps']]],
893 ····['as_521',·['as',·['../structt__methoddata__same.xhtml#aab39d3304710c617c29aab8e2cbfbc5a',·1,·'t_methoddata_same']]],893 ····['as_521',·['as',·['../structt__methoddata__same.xhtml#aab39d3304710c617c29aab8e2cbfbc5a',·1,·'t_methoddata_same']]],
894 ····['as_20a_20library_522',·['Using·GROMACS·as·a·library',·['../page_usinglibrary.xhtml',·1,·'index']]],894 ····['as_20a_20library_522',·['Using·GROMACS·as·a·library',·['../page_usinglibrary.xhtml',·1,·'index']]],
 895 ····['as_5fdvec_5farray_523',·['as_dvec_array',·['../namespacegmx.xhtml#ac635996b6d78ada40405ba91310641f7',·1,·'gmx::as_dvec_array(DVec·*x)'],
895 ····['as_5fdvec_5farray_523',·['as_dvec_array',·['../namespacegmx.xhtml#ab435e743af1b412558e429022580056b',·1,·'gmx::as_dvec_array(const·DVec·*x)'],896 ········['../namespacegmx.xhtml#ab435e743af1b412558e429022580056b',·1,·'gmx::as_dvec_array(const·DVec·*x)']
896 ········['../namespacegmx.xhtml#ac635996b6d78ada40405ba91310641f7',·1,·'gmx::as_dvec_array(DVec·*x)'] 
897 ····]],897 ····]],
898 ····['as_5fivec_5farray_524',·['as_ivec_array',·['../namespacegmx.xhtml#ab7d47f82fdb0dceddb28d228ecc926f2',·1,·'gmx::as_ivec_array(IVec·*x)'], 
899 ········['../namespacegmx.xhtml#a169687020d64e828f0120aa553c4240b',·1,·'gmx::as_ivec_array(const·IVec·*x)']898 ····['as_5fivec_5farray_524',·['as_ivec_array',·['../namespacegmx.xhtml#a169687020d64e828f0120aa553c4240b',·1,·'gmx::as_ivec_array(const·IVec·*x)'],
 899 ········['../namespacegmx.xhtml#ab7d47f82fdb0dceddb28d228ecc926f2',·1,·'gmx::as_ivec_array(IVec·*x)']
900 ····]],900 ····]],
901 ····['as_5frvec_5farray_525',·['as_rvec_array',·['../namespacegmx.xhtml#ac36e90ef229d4fc88ba16409aef0b759',·1,·'gmx::as_rvec_array(RVec·*x)'], 
902 ········['../namespacegmx.xhtml#aede03a44c13df763bdd1d8d9d0887dda',·1,·'gmx::as_rvec_array(const·RVec·*x)']901 ····['as_5frvec_5farray_525',·['as_rvec_array',·['../namespacegmx.xhtml#aede03a44c13df763bdd1d8d9d0887dda',·1,·'gmx::as_rvec_array(const·RVec·*x)'],
 902 ········['../namespacegmx.xhtml#ac36e90ef229d4fc88ba16409aef0b759',·1,·'gmx::as_rvec_array(RVec·*x)']
903 ····]],903 ····]],
904 ····['as_5fs_5fsorted_526',·['as_s_sorted',·['../structt__methoddata__same.xhtml#a8e60d150d29d86b285a3e90c249f6b8e',·1,·'t_methoddata_same']]],904 ····['as_5fs_5fsorted_526',·['as_s_sorted',·['../structt__methoddata__same.xhtml#a8e60d150d29d86b285a3e90c249f6b8e',·1,·'t_methoddata_same']]],
905 ····['as_5fvec_527',·['as_vec',·['../classgmx_1_1BasicVector.xhtml#a751f212c63603b0c310ea931453c3531',·1,·'gmx::BasicVector::as_vec()'],905 ····['as_5fvec_527',·['as_vec',·['../classgmx_1_1BasicVector.xhtml#a751f212c63603b0c310ea931453c3531',·1,·'gmx::BasicVector::as_vec()'],
906 ········['../classgmx_1_1BasicVector.xhtml#a096b39d916263bc829f56ac184f176a9',·1,·'gmx::BasicVector::as_vec()·const']906 ········['../classgmx_1_1BasicVector.xhtml#a096b39d916263bc829f56ac184f176a9',·1,·'gmx::BasicVector::as_vec()·const']
907 ····]],907 ····]],
908 ····['as_5fvec_5farray_528',·['as_vec_array',·['../namespacegmx.xhtml#af1a995d2d5d21983a662ab3e79e2b2e3',·1,·'gmx::as_vec_array(const·BasicVector&lt;·ValueType·&gt;·*x)'],908 ····['as_5fvec_5farray_528',·['as_vec_array',·['../namespacegmx.xhtml#af1a995d2d5d21983a662ab3e79e2b2e3',·1,·'gmx::as_vec_array(const·BasicVector&lt;·ValueType·&gt;·*x)'],
909 ········['../namespacegmx.xhtml#adbccce10168efa3d28a2f7d3b644df37',·1,·'gmx::as_vec_array(BasicVector&lt;·ValueType·&gt;·*x)']909 ········['../namespacegmx.xhtml#adbccce10168efa3d28a2f7d3b644df37',·1,·'gmx::as_vec_array(BasicVector&lt;·ValueType·&gt;·*x)']
910 ····]],910 ····]],
911 ····['asabsolute_529',·['asAbsolute',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a1256c4a2e308cddc83601e72d07ea9ff',·1,·'gmx::test::FloatingPointDifference']]],911 ····['asabsolute_529',·['asAbsolute',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a1256c4a2e308cddc83601e72d07ea9ff',·1,·'gmx::test::FloatingPointDifference']]],
912 ····['asconstview_530',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],912 ····['asconstview_530',·['asConstView',·['../classgmx_1_1MultiDimArray.xhtml#a5dd95fca66f9da9723365d7bbe9df05a',·1,·'gmx::MultiDimArray']]],
913 ····['asfloat3_531',·['asfloat3',·['../typecasts__cuda__hip_8h.xhtml#a907e7d1b77f6ed53ba9aee03de2e104e',·1,·'asFloat3(gmx::RVec·*in):&#160;typecasts_cuda_hip.h'],913 ····['asfloat3_531',·['asfloat3',·['../typecasts__cuda__hip_8h.xhtml#a907e7d1b77f6ed53ba9aee03de2e104e',·1,·'asFloat3(gmx::RVec·*in):&#160;typecasts_cuda_hip.h'],
914 ········['../typecasts__cuda__hip_8h.xhtml#a5b3b274c6d609569eeb80fdcbe90793b',·1,·'asFloat3(const·gmx::RVec·*in):&#160;typecasts_cuda_hip.h']914 ········['../typecasts__cuda__hip_8h.xhtml#a5b3b274c6d609569eeb80fdcbe90793b',·1,·'asFloat3(const·gmx::RVec·*in):&#160;typecasts_cuda_hip.h']
915 ····]],915 ····]],
 916 ····['asfloat3pointer_532',·['asfloat3pointer',·['../typecasts__cuda__hip_8h.xhtml#a11a331229d7c98f7483574dec7798425',·1,·'asFloat3Pointer(gmx::RVec·**in):&#160;typecasts_cuda_hip.h'],
916 ····['asfloat3pointer_532',·['asfloat3pointer',·['../typecasts__cuda__hip_8h.xhtml#ab65b218556c9108ce68d7332f0a801f8',·1,·'asFloat3Pointer(const·gmx::RVec·*const·*in):&#160;typecasts_cuda_hip.h'],917 ········['../typecasts__cuda__hip_8h.xhtml#ab65b218556c9108ce68d7332f0a801f8',·1,·'asFloat3Pointer(const·gmx::RVec·*const·*in):&#160;typecasts_cuda_hip.h']
917 ········['../typecasts__cuda__hip_8h.xhtml#a11a331229d7c98f7483574dec7798425',·1,·'asFloat3Pointer(gmx::RVec·**in):&#160;typecasts_cuda_hip.h'] 
918 ····]],918 ····]],
919 ····['asgenericfloat3pointer_533',·['asgenericfloat3pointer',·['../namespacegmx.xhtml#a7cf8c0c79ed50d630c676a108cff651e',·1,·'gmx::asGenericFloat3Pointer(T·*in)'],919 ····['asgenericfloat3pointer_533',·['asgenericfloat3pointer',·['../namespacegmx.xhtml#a61d1fa4d0073e932d5ea53fd4ec968e9',·1,·'gmx::asGenericFloat3Pointer(C·&amp;in)'],
 920 ········['../namespacegmx.xhtml#a7cf8c0c79ed50d630c676a108cff651e',·1,·'gmx::asGenericFloat3Pointer(T·*in)'],
920 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],921 ········['../namespacegmx.xhtml#a790f4239e154b040ddbcef4a1d3122ae',·1,·'gmx::asGenericFloat3Pointer(const·T·*in)'],
921 ········['../namespacegmx.xhtml#a61d1fa4d0073e932d5ea53fd4ec968e9',·1,·'gmx::asGenericFloat3Pointer(C·&amp;in)'], 
922 ········['../namespacegmx.xhtml#a1b0b8846fcb8364fafd83a5592f12108',·1,·'gmx::asGenericFloat3Pointer(const·C·&amp;in)']922 ········['../namespacegmx.xhtml#a1b0b8846fcb8364fafd83a5592f12108',·1,·'gmx::asGenericFloat3Pointer(const·C·&amp;in)']
923 ····]],923 ····]],
924 ····['asin_534',·['asin',·['../namespacegmx.xhtml#a3d5120df9c0bf437e64c806a7cfdad02',·1,·'gmx::asin(float·x)'],924 ····['asin_534',·['asin',·['../namespacegmx.xhtml#a3d5120df9c0bf437e64c806a7cfdad02',·1,·'gmx::asin(float·x)'],
925 ········['../namespacegmx.xhtml#ab02c7d47595f11074fbfedff40145544',·1,·'gmx::asin(double·x)']925 ········['../namespacegmx.xhtml#ab02c7d47595f11074fbfedff40145544',·1,·'gmx::asin(double·x)']
926 ····]],926 ····]],
927 ····['asinsingleaccuracy_535',·['asinSingleAccuracy',·['../namespacegmx.xhtml#a98465e562d7b1b24755bc693db04c8f5',·1,·'gmx']]],927 ····['asinsingleaccuracy_535',·['asinSingleAccuracy',·['../namespacegmx.xhtml#a98465e562d7b1b24755bc693db04c8f5',·1,·'gmx']]],
928 ····['asize_536',·['asize',·['../group__module__utility.xhtml#ga2f549c8a29e4b43b862a96314a66a5fa',·1,·'arraysize.h']]],928 ····['asize_536',·['asize',·['../group__module__utility.xhtml#ga2f549c8a29e4b43b862a96314a66a5fa',·1,·'arraysize.h']]],
Offset 951, 159 lines modifiedOffset 951, 159 lines modified
951 ····['assignpositionrestraintsforatom_557',·['assignPositionRestraintsForAtom',·['../localtopology_8cpp.xhtml#afb4fa529774cf67304776e604b9879fd',·1,·'localtopology.cpp']]],951 ····['assignpositionrestraintsforatom_557',·['assignPositionRestraintsForAtom',·['../localtopology_8cpp.xhtml#afb4fa529774cf67304776e604b9879fd',·1,·'localtopology.cpp']]],
952 ····['assignvsitestosingletask_558',·['assignVsitesToSingleTask',·['../namespacegmx.xhtml#a1eee8bc37f540f65a107fa21a102c09d',·1,·'gmx']]],952 ····['assignvsitestosingletask_558',·['assignVsitesToSingleTask',·['../namespacegmx.xhtml#a1eee8bc37f540f65a107fa21a102c09d',·1,·'gmx']]],
953 ····['assignvsitestothread_559',·['assignVsitesToThread',·['../namespacegmx.xhtml#a8ff9857961193a9bd5fbd1fb027ba44f',·1,·'gmx']]],953 ····['assignvsitestothread_559',·['assignVsitesToThread',·['../namespacegmx.xhtml#a8ff9857961193a9bd5fbd1fb027ba44f',·1,·'gmx']]],
954 ····['associativity_560',·['associativity',·['../structgmx_1_1HardwareTopology_1_1Cache.xhtml#ad5a56cc20c9ca27eb6276374e411a430',·1,·'gmx::HardwareTopology::Cache']]],954 ····['associativity_560',·['associativity',·['../structgmx_1_1HardwareTopology_1_1Cache.xhtml#ad5a56cc20c9ca27eb6276374e411a430',·1,·'gmx::HardwareTopology::Cache']]],
955 ····['asulps_561',·['asUlps',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a64f20cf7b256513aa8bdda6c142f7dae',·1,·'gmx::test::FloatingPointDifference']]],955 ····['asulps_561',·['asUlps',·['../classgmx_1_1test_1_1FloatingPointDifference.xhtml#a64f20cf7b256513aa8bdda6c142f7dae',·1,·'gmx::test::FloatingPointDifference']]],
956 ····['asview_562',·['asView',·['../classgmx_1_1MultiDimArray.xhtml#a23a1fb8f2c0045928c48ccb88ef85632',·1,·'gmx::MultiDimArray']]],956 ····['asview_562',·['asView',·['../classgmx_1_1MultiDimArray.xhtml#a23a1fb8f2c0045928c48ccb88ef85632',·1,·'gmx::MultiDimArray']]],
957 ····['async_563',·['Async',·['../gpu__utils_8h.xhtml#aed6d99acc2a7b8495f08fa2d9d2277eba24aa4117da86c41684ad25742832dfa6',·1,·'gpu_utils.h']]],957 ····['async_563',·['Async',·['../gpu__utils_8h.xhtml#aed6d99acc2a7b8495f08fa2d9d2277eba24aa4117da86c41684ad25742832dfa6',·1,·'gpu_utils.h']]],
 958 ····['at_564',·['at',·['../classgmx_1_1ListOfLists.xhtml#a49d32c6ff1a5eca209be358475e05713',·1,·'gmx::ListOfLists::at()'],
958 ····['at_564',·['at',·['../classgmx_1_1EnergyFrame.xhtml#a73ace4971cafa88adaceea02aea4646e',·1,·'gmx::EnergyFrame::at()'], 
959 ········['../classgmx__ga2la__t.xhtml#ad8f304cbe18bbec9715f837fd1e2aa93',·1,·'gmx_ga2la_t::at()'], 
960 ········['../classgmx_1_1FixedCapacityVector.xhtml#a7a5d2f452d79950647ced1d370628f76',·1,·'gmx::FixedCapacityVector::at(size_type·n)·const'], 
961 ········['../classgmx_1_1FixedCapacityVector.xhtml#a438cb41d4f31da753c8d7d36256c0c41',·1,·'gmx::FixedCapacityVector::at(size_type·n)'], 
962 ········['../classStringTable.xhtml#adcc938ba043e0c531773e64d87d00827',·1,·'StringTable::at()'], 
963 ········['../classgmx_1_1ArrayRef.xhtml#adc8ea4073c94eb246b0027c4bd7d01da',·1,·'gmx::ArrayRef::at()'],959 ········['../classgmx_1_1ArrayRef.xhtml#adc8ea4073c94eb246b0027c4bd7d01da',·1,·'gmx::ArrayRef::at()'],
964 ········['../classgmx_1_1ListOfLists.xhtml#a49d32c6ff1a5eca209be358475e05713',·1,·'gmx::ListOfLists::at()']960 ········['../classStringTable.xhtml#adcc938ba043e0c531773e64d87d00827',·1,·'StringTable::at()'],
 961 ········['../classgmx_1_1FixedCapacityVector.xhtml#a438cb41d4f31da753c8d7d36256c0c41',·1,·'gmx::FixedCapacityVector::at(size_type·n)'],
 962 ········['../classgmx_1_1FixedCapacityVector.xhtml#a7a5d2f452d79950647ced1d370628f76',·1,·'gmx::FixedCapacityVector::at(size_type·n)·const'],
 963 ········['../classgmx_1_1EnergyFrame.xhtml#a73ace4971cafa88adaceea02aea4646e',·1,·'gmx::EnergyFrame::at()'],
 964 ········['../classgmx__ga2la__t.xhtml#ad8f304cbe18bbec9715f837fd1e2aa93',·1,·'gmx_ga2la_t::at()']
965 ····]],965 ····]],
966 ····['at_5fend_565',·['at_end',·['../structgmx__domdec__specat__comm__t.xhtml#acfc1ad88275feb891d5eaf41e6fe31b6',·1,·'gmx_domdec_specat_comm_t']]],966 ····['at_5fend_565',·['at_end',·['../structgmx__domdec__specat__comm__t.xhtml#acfc1ad88275feb891d5eaf41e6fe31b6',·1,·'gmx_domdec_specat_comm_t']]],
967 ····['at_5fstart_566',·['at_start',·['../structgmx__domdec__specat__comm__t.xhtml#a55cac48fb79ab129c6e54ecd71b10d66',·1,·'gmx_domdec_specat_comm_t']]],967 ····['at_5fstart_566',·['at_start',·['../structgmx__domdec__specat__comm__t.xhtml#a55cac48fb79ab129c6e54ecd71b10d66',·1,·'gmx_domdec_specat_comm_t']]],
968 ····['atan_567',·['atan',·['../namespacegmx.xhtml#a1afbc2ada56f899a8d3dc5c61530e28b',·1,·'gmx::atan(float·x)'],968 ····['atan_567',·['atan',·['../namespacegmx.xhtml#a1afbc2ada56f899a8d3dc5c61530e28b',·1,·'gmx::atan(float·x)'],
969 ········['../namespacegmx.xhtml#af15e6f3962e035d69013bd91621fd9f8',·1,·'gmx::atan(double·x)']969 ········['../namespacegmx.xhtml#af15e6f3962e035d69013bd91621fd9f8',·1,·'gmx::atan(double·x)']
970 ····]],970 ····]],
 971 ····['atan2_568',·['atan2',·['../namespacegmx.xhtml#aed8336a58abddcdb6afa7835138ecf46',·1,·'gmx::atan2(float·y,·float·x)'],
971 ····['atan2_568',·['atan2',·['../namespacegmx.xhtml#aa70a1aa5e9c161a2770d0f9b7eca1805',·1,·'gmx::atan2(double·y,·double·x)'],972 ········['../namespacegmx.xhtml#aa70a1aa5e9c161a2770d0f9b7eca1805',·1,·'gmx::atan2(double·y,·double·x)']
972 ········['../namespacegmx.xhtml#aed8336a58abddcdb6afa7835138ecf46',·1,·'gmx::atan2(float·y,·float·x)'] 
973 ····]],973 ····]],
974 ····['atan2singleaccuracy_569',·['atan2SingleAccuracy',·['../namespacegmx.xhtml#a2552094c1be29e087e1e85ae02fb0c7a',·1,·'gmx']]],974 ····['atan2singleaccuracy_569',·['atan2SingleAccuracy',·['../namespacegmx.xhtml#a2552094c1be29e087e1e85ae02fb0c7a',·1,·'gmx']]],
975 ····['atansingleaccuracy_570',·['atanSingleAccuracy',·['../namespacegmx.xhtml#a44ca54cb014d2f33b98f3d523d90a2f5',·1,·'gmx']]],975 ····['atansingleaccuracy_570',·['atanSingleAccuracy',·['../namespacegmx.xhtml#a44ca54cb014d2f33b98f3d523d90a2f5',·1,·'gmx']]],
976 ····['atdat_571',·['atdat',·['../structgmx_1_1NbnxmGpu.xhtml#ac977a0cf05953a53ff1df8cd01d06853',·1,·'gmx::NbnxmGpu::atdat'],976 ····['atdat_571',·['atdat',·['../structgmx_1_1NbnxmGpu.xhtml#ac977a0cf05953a53ff1df8cd01d06853',·1,·'gmx::NbnxmGpu::atdat'],
977 ········['../structgmx_1_1GpuTimers.xhtml#ae992b44d7d09dcf79d1347f9219d3402',·1,·'gmx::GpuTimers::atdat']977 ········['../structgmx_1_1GpuTimers.xhtml#ae992b44d7d09dcf79d1347f9219d3402',·1,·'gmx::GpuTimers::atdat']
978 ····]],978 ····]],
979 ····['atf_572',·['atf',·['../classgmx_1_1Lincs.xhtml#a0c17addba5fc06083dd777639123fbee',·1,·'gmx::Lincs']]],979 ····['atf_572',·['atf',·['../classgmx_1_1Lincs.xhtml#a0c17addba5fc06083dd777639123fbee',·1,·'gmx::Lincs']]],
980 ····['atnr_573',·['atnr',·['../structgmx__ffparams__t.xhtml#a0bbf906344980fc3d5af5872db5b8ff4',·1,·'gmx_ffparams_t::atnr'],980 ····['atnr_573',·['atnr',·['../structgmx__ffparams__t.xhtml#a0bbf906344980fc3d5af5872db5b8ff4',·1,·'gmx_ffparams_t::atnr'],
981 ········['../structt__idef.xhtml#ac0de032c9fe33bc65755c359d7724d71',·1,·'t_idef::atnr']981 ········['../structt__idef.xhtml#ac0de032c9fe33bc65755c359d7724d71',·1,·'t_idef::atnr']
982 ····]],982 ····]],
 983 ····['atom_574',·['atom',·['../classAtomProxy.xhtml#a74dd8b9d35b876b3cf4a3b4a8e772cfc',·1,·'AtomProxy::atom()'],
983 ····['atom_574',·['atom',·['../structt__nblist_1_1JEntry.xhtml#a41ea68a69e0699cbc7a9809dbcf739ec',·1,·'t_nblist::JEntry::atom'],984 ········['../structt__nblist_1_1JEntry.xhtml#a41ea68a69e0699cbc7a9809dbcf739ec',·1,·'t_nblist::JEntry::atom'],
 985 ········['../structPreprocessResidue.xhtml#acb4af191ced642266b5124549f2bb90e',·1,·'PreprocessResidue::atom'],
984 ········['../classAtomProxy.xhtml#a74dd8b9d35b876b3cf4a3b4a8e772cfc',·1,·'AtomProxy::atom()'], 
985 ········['../structt__nblist_1_1IEntry.xhtml#a159a337c3a0dff382aa71c1d327272bf',·1,·'t_nblist::IEntry::atom'], 
986 ········['../structgmx_1_1AtomIndex.xhtml#a86c46467c265c752b180d28dac63910e',·1,·'gmx::AtomIndex::atom'], 
987 ········['../structMoleculePatch.xhtml#a1d1bc0e0e73fa1aed4ca493c981fb464',·1,·'MoleculePatch::atom'],986 ········['../structMoleculePatch.xhtml#a1d1bc0e0e73fa1aed4ca493c981fb464',·1,·'MoleculePatch::atom'],
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885 ····]],885 ····]],
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907 ····['closestintegerpoint_603',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],907 ····['closestintegerpoint_603',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]],
908 ····['closetimingregion_604',·['closetimingregion',·['../classGpuRegionTimerImpl.xhtml#aeb3038f3162054db1b0545b5a091bd08',·1,·'GpuRegionTimerImpl::closeTimingRegion()'], 
909 ········['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()']908 ····['closetimingregion_604',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'],
 909 ········['../classGpuRegionTimerImpl.xhtml#aeb3038f3162054db1b0545b5a091bd08',·1,·'GpuRegionTimerImpl::closeTimingRegion()']
910 ····]],910 ····]],
911 ····['cluster_20non_20bonded_20algorithm_605',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],911 ····['cluster_20non_20bonded_20algorithm_605',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
912 ····['clusterboundingboxdistance2_606',·['clusterBoundingBoxDistance2',·['../namespacegmx.xhtml#a2ccdf8ae57a26daaf6f5db537d6ea54e',·1,·'gmx']]],912 ····['clusterboundingboxdistance2_606',·['clusterBoundingBoxDistance2',·['../namespacegmx.xhtml#a2ccdf8ae57a26daaf6f5db537d6ea54e',·1,·'gmx']]],
913 ····['clusterdistancekerneltype_607',·['ClusterDistanceKernelType',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddb',·1,·'gmx']]],913 ····['clusterdistancekerneltype_607',·['ClusterDistanceKernelType',·['../namespacegmx.xhtml#a3f42ed0b9f4da1face257003c06bfddb',·1,·'gmx']]],
914 ····['clusterdistancekerneltype_2eh_608',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],914 ····['clusterdistancekerneltype_2eh_608',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],
915 ····['clusterflags_609',·['clusterFlags',·['../classgmx_1_1Grid.xhtml#ac63e6850975655ffc43ebd93d50dd318',·1,·'gmx::Grid']]],915 ····['clusterflags_609',·['clusterFlags',·['../classgmx_1_1Grid.xhtml#ac63e6850975655ffc43ebd93d50dd318',·1,·'gmx::Grid']]],
916 ····['clusterisperturbed_610',·['clusterIsPerturbed',·['../classgmx_1_1Grid.xhtml#a4b81fbe012e27d59e6403066546e96f1',·1,·'gmx::Grid']]],916 ····['clusterisperturbed_610',·['clusterIsPerturbed',·['../classgmx_1_1Grid.xhtml#a4b81fbe012e27d59e6403066546e96f1',·1,·'gmx::Grid']]],
917 ····['clusters_20of_20warps_611',·['of·packed·j·clusters·*·#·of·warps',·['../classgmx_1_1GpuPairlist.xhtml#autotoc_md108',·1,·'']]],917 ····['clusters_20of_20warps_611',·['of·packed·j·clusters·*·#·of·warps',·['../classgmx_1_1GpuPairlist.xhtml#autotoc_md108',·1,·'']]],
918 ····['clustsize_2ecpp_612',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],918 ····['clustsize_2ecpp_612',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],
919 ····['cmaincommandlinemodule_613',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule()'],919 ····['cmaincommandlinemodule_613',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule'],
920 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule']920 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule()']
921 ····]],921 ····]],
 922 ····['cmainfunction_614',·['cmainfunction',·['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'],
922 ····['cmainfunction_614',·['cmainfunction',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule:[·...·truncated·by·diffoscope;·len:·17,·SHA:·18746c1cadb3aeaa35bdea7d11880e79575ac5b7cbbc95974b1a1fb87c8e725f·...·]923 ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainFunction']
923 ········['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'] 
924 ····]],924 ····]],
925 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_615',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],925 ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_615',·['CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]],
926 ····['cmap_616',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType::cmap'],926 ····['cmap_616',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType::cmap'],
927 ········['../structgmx__cmapdata__t.xhtml#a84746eed9cc32f714ec10dbe675847d7',·1,·'gmx_cmapdata_t::cmap']927 ········['../structgmx__cmapdata__t.xhtml#a84746eed9cc32f714ec10dbe675847d7',·1,·'gmx_cmapdata_t::cmap']
928 ····]],928 ····]],
929 ····['cmap_5fcoeff_5fmatrix_617',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],929 ····['cmap_5fcoeff_5fmatrix_617',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]],
930 ····['cmap_5fdihs_618',·['cmap_dihs',·['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],930 ····['cmap_5fdihs_618',·['cmap_dihs',·['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp'],
931 ········['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']931 ········['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef&lt;·const·real·&gt;,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index):&#160;bonded.cpp']
932 ····]],932 ····]],
933 ····['cmap_5fgrid_619',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t::cmap_grid'],933 ····['cmap_5fgrid_619',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t::cmap_grid'],
934 ········['../classInteractionDefinitions.xhtml#a7ee9453681c3fe520371511fd663b2cb',·1,·'InteractionDefinitions::cmap_grid']934 ········['../classInteractionDefinitions.xhtml#a7ee9453681c3fe520371511fd663b2cb',·1,·'InteractionDefinitions::cmap_grid']
935 ····]],935 ····]],
936 ····['cmap_5fsetup_5fgrid_5findex_620',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],936 ····['cmap_5fsetup_5fgrid_5findex_620',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]],
937 ····['cmapatomtypes_621',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],937 ····['cmapatomtypes_621',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]],
938 ····['cmapdata_622',·['cmapdata',·['../structgmx__cmap__t.xhtml#aa9e7f26ea95886d0fa833eed83cae1ca',·1,·'gmx_cmap_t']]],938 ····['cmapdata_622',·['cmapdata',·['../structgmx__cmap__t.xhtml#aa9e7f26ea95886d0fa833eed83cae1ca',·1,·'gmx_cmap_t']]],
Offset 940, 56 lines modifiedOffset 940, 56 lines modified
940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],
941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],
942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],
943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],
944 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']944 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']
945 ····]],945 ····]],
946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],
947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
948 ········['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']948 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
949 ····]],949 ····]],
950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],
951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],
953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],
954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],
955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
956 ········['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']956 ········['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']
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Offset 485, 19 lines modifiedOffset 485, 19 lines modified
485 ····['densityfittingoutputprovider_295',·['DensityFittingOutputProvider',·['../classgmx_1_1DensityFittingOutputProvider.xhtml',·1,·'gmx']]],485 ····['densityfittingoutputprovider_295',·['DensityFittingOutputProvider',·['../classgmx_1_1DensityFittingOutputProvider.xhtml',·1,·'gmx']]],
486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],486 ····['densityfittingoutputprovider_2ecpp_296',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],
487 ····['densityfittingoutputprovider_2eh_297',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],487 ····['densityfittingoutputprovider_2eh_297',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],
488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],488 ····['densityfittingparameters_298',·['DensityFittingParameters',·['../structgmx_1_1DensityFittingParameters.xhtml',·1,·'gmx']]],
489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],489 ····['densityfittingparameters_2eh_299',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],
490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],490 ····['densityfittingsimulationparametersetup_300',·['DensityFittingSimulationParameterSetup',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}']]],
491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],491 ····['densityfittingtest_301',·['DensityFittingTest',·['../classgmx_1_1test_1_1DensityFittingTest.xhtml',·1,·'gmx::test']]],
492 ····['densitysimilaritycrosscorrelation_302',·['densitysimilaritycrosscorrelation',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation'],492 ····['densitysimilaritycrosscorrelation_302',·['densitysimilaritycrosscorrelation',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a4ee22cb21ab72112c8abf3e587e5eccd',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::DensitySimilarityCrossCorrelation()'],
493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml#a4ee22cb21ab72112c8abf3e587e5eccd',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation::DensitySimilarityCrossCorrelation()']493 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityCrossCorrelation.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityCrossCorrelation']
494 ····]],494 ····]],
495 ····['densitysimilarityinnerproduct_303',·['densitysimilarityinnerproduct',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct'],495 ····['densitysimilarityinnerproduct_303',·['densitysimilarityinnerproduct',·['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::DensitySimilarityInnerProduct()'],
496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml#a96f37a060eef783e6c336578c6b17ffa',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct::DensitySimilarityInnerProduct()']496 ········['../classgmx_1_1anonymous__namespace_02densityfit_8cpp_03_1_1DensitySimilarityInnerProduct.xhtml',·1,·'gmx::anonymous_namespace{densityfit.cpp}::DensitySimilarityInnerProduct']
497 ····]],497 ····]],
498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasureMethod·method,·density·referenceDensity)'],498 ····['densitysimilaritymeasure_304',·['densitysimilaritymeasure',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#a188a695f4f6981e8e79736214b2dffed',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasureMethod·method,·density·referenceDensity)'],
499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept'],499 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#af093604e59c0ae7d7a00cc06d254b7de',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure(DensitySimilarityMeasure·&amp;&amp;other)·noexcept'],
500 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml',·1,·'gmx::DensitySimilarityMeasure'],500 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml',·1,·'gmx::DensitySimilarityMeasure'],
501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#aa928209c9b6274f37b3feb27487982e0',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure()']501 ········['../classgmx_1_1DensitySimilarityMeasure.xhtml#aa928209c9b6274f37b3feb27487982e0',·1,·'gmx::DensitySimilarityMeasure::DensitySimilarityMeasure()']
502 ····]],502 ····]],
503 ····['densitysimilaritymeasuremethod_305',·['DensitySimilarityMeasureMethod',·['../namespacegmx.xhtml#a659cc27006f5ed7f2ecb076126f0857f',·1,·'gmx']]],503 ····['densitysimilaritymeasuremethod_305',·['DensitySimilarityMeasureMethod',·['../namespacegmx.xhtml#a659cc27006f5ed7f2ecb076126f0857f',·1,·'gmx']]],
Offset 584, 16 lines modifiedOffset 584, 16 lines modified
584 ····['device_5fcontext_5focl_2ecpp_353',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],584 ····['device_5fcontext_5focl_2ecpp_353',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],
585 ····['device_5fcontext_5fsycl_2ecpp_354',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],585 ····['device_5fcontext_5fsycl_2ecpp_354',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],
586 ····['device_5fevent_2eh_355',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],586 ····['device_5fevent_2eh_355',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],
587 ····['device_5fevent_5fhip_2eh_356',·['device_event_hip.h',·['../device__event__hip_8h.xhtml',·1,·'']]],587 ····['device_5fevent_5fhip_2eh_356',·['device_event_hip.h',·['../device__event__hip_8h.xhtml',·1,·'']]],
588 ····['device_5fevent_5focl_2eh_357',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],588 ····['device_5fevent_5focl_2eh_357',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],
589 ····['device_5fevent_5fsycl_2eh_358',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],589 ····['device_5fevent_5fsycl_2eh_358',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],
590 ····['device_5finformation_2eh_359',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],590 ····['device_5finformation_2eh_359',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],
591 ····['device_5fmanagement_2ecpp_360',·['device_management.cpp',·['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],591 ····['device_5fmanagement_2ecpp_360',·['device_management.cpp',·['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],
592 ········['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)']592 ········['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)']
593 ····]],593 ····]],
594 ····['device_5fmanagement_2eh_361',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],594 ····['device_5fmanagement_2eh_361',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],
595 ····['device_5fmanagement_5fcommon_2ecpp_362',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],595 ····['device_5fmanagement_5fcommon_2ecpp_362',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],
596 ····['device_5fmanagement_5fhip_2ecpp_363',·['device_management_hip.cpp',·['../device__management__hip_8cpp.xhtml',·1,·'']]],596 ····['device_5fmanagement_5fhip_2ecpp_363',·['device_management_hip.cpp',·['../device__management__hip_8cpp.xhtml',·1,·'']]],
597 ····['device_5fmanagement_5focl_2ecpp_364',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],597 ····['device_5fmanagement_5focl_2ecpp_364',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],
598 ····['device_5fmanagement_5fshared_5famd_2ecpp_365',·['device_management_shared_amd.cpp',·['../device__management__shared__amd_8cpp.xhtml',·1,·'']]],598 ····['device_5fmanagement_5fshared_5famd_2ecpp_365',·['device_management_shared_amd.cpp',·['../device__management__shared__amd_8cpp.xhtml',·1,·'']]],
599 ····['device_5fmanagement_5fshared_5famd_2eh_366',·['device_management_shared_amd.h',·['../device__management__shared__amd_8h.xhtml',·1,·'']]],599 ····['device_5fmanagement_5fshared_5famd_2eh_366',·['device_management_shared_amd.h',·['../device__management__shared__amd_8h.xhtml',·1,·'']]],
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Offset 266, 28 lines modifiedOffset 266, 28 lines modified
266 ····['enableexternalfepstatesetting_163',·['enableexternalfepstatesetting',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a8aab439423afb11beab47abb9201f6bc',·1,·'gmx::FreeEnergyPerturbationData::enableExternalFepStateSetting()'],266 ····['enableexternalfepstatesetting_163',·['enableexternalfepstatesetting',·['../classgmx_1_1FreeEnergyPerturbationData.xhtml#a8aab439423afb11beab47abb9201f6bc',·1,·'gmx::FreeEnergyPerturbationData::enableExternalFepStateSetting()'],
267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']
268 ····]],268 ····]],
269 ····['enablefpexceptions_164',·['enableFPExceptions',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#afffd8e4835ea5a633d3a6ab2b9c62ae7',·1,·'gmx::CommandLineCommonOptionsHolder']]],269 ····['enablefpexceptions_164',·['enableFPExceptions',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#afffd8e4835ea5a633d3a6ab2b9c62ae7',·1,·'gmx::CommandLineCommonOptionsHolder']]],
270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],
271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],
272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
 273 ····['end_168',·['end',·['../classWorkDivision.xhtml#a55b972ca8118361804f650ae4fd70f77',·1,·'WorkDivision::end()'],
273 ····['end_168',·['end',·['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],274 ········['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],
274 ········['../classgmx_1_1ArrayRef.xhtml#ad78963af3304f05b7afb61f3d2d3c682',·1,·'gmx::ArrayRef::end()'],275 ········['../classgmx_1_1ArrayRef.xhtml#ad78963af3304f05b7afb61f3d2d3c682',·1,·'gmx::ArrayRef::end()'],
275 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],276 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],
276 ········['../classgmx_1_1FixedCapacityVector.xhtml#a1950a5a0fa86373664dd67fa2b7341f1',·1,·'gmx::FixedCapacityVector::end()·const·noexcept'],277 ········['../classgmx_1_1FixedCapacityVector.xhtml#a1950a5a0fa86373664dd67fa2b7341f1',·1,·'gmx::FixedCapacityVector::end()·const·noexcept'],
277 ········['../classgmx_1_1EnergyFrame.xhtml#a822dc495870d6ced6e1e3bf3dd12b001',·1,·'gmx::EnergyFrame::end()'],278 ········['../classgmx_1_1EnergyFrame.xhtml#a822dc495870d6ced6e1e3bf3dd12b001',·1,·'gmx::EnergyFrame::end()'],
278 ········['../namespacegmx.xhtml#adc38f264fbd12f7c458acaa006bafc23',·1,·'gmx::end(const·BasicMdspan·&amp;basicMdspan)'], 
279 ········['../namespacegmx.xhtml#a052781576fbbc1c6970be93d67899ed6',·1,·'gmx::end(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'], 
280 ········['../namespacegmx.xhtml#ad27509079b48f39c3f4fab22fd1a7796',·1,·'gmx::end(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'], 
281 ········['../classIListRange.xhtml#af63fb2ced09ef9eccb0e88fbc7b26b09',·1,·'IListRange::end()'],279 ········['../classIListRange.xhtml#af63fb2ced09ef9eccb0e88fbc7b26b09',·1,·'IListRange::end()'],
282 ········['../classgmx_1_1EnergyTerm.xhtml#ac9ab5be006073499a3fc86511b7fb2da',·1,·'gmx::EnergyTerm::end()'], 
283 ········['../classWorkDivision.xhtml#a55b972ca8118361804f650ae4fd70f77',·1,·'WorkDivision::end()'], 
284 ········['../classAtomRange.xhtml#a61e27abc7881206f14ae2dd2af0e97f3',·1,·'AtomRange::end()'],280 ········['../classAtomRange.xhtml#a61e27abc7881206f14ae2dd2af0e97f3',·1,·'AtomRange::end()'],
 281 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#aa5d327c9a3459a9130dca36a084625c7',·1,·'gmx::internal::SimdArrayRef::end()'],
285 ········['../classgmx_1_1IntegerBox.xhtml#a88b65fffe1dd2f10b4283ce6c7c0881f',·1,·'gmx::IntegerBox::end()'],282 ········['../classgmx_1_1IntegerBox.xhtml#a88b65fffe1dd2f10b4283ce6c7c0881f',·1,·'gmx::IntegerBox::end()'],
286 ········['../classgmx_1_1internal_1_1SimdArrayRef.xhtml#aa5d327c9a3459a9130dca36a084625c7',·1,·'gmx::internal::SimdArrayRef::end()']283 ········['../classgmx_1_1EnergyTerm.xhtml#ac9ab5be006073499a3fc86511b7fb2da',·1,·'gmx::EnergyTerm::end()'],
 284 ········['../namespacegmx.xhtml#ad27509079b48f39c3f4fab22fd1a7796',·1,·'gmx::end(const·MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
 285 ········['../namespacegmx.xhtml#a052781576fbbc1c6970be93d67899ed6',·1,·'gmx::end(MultiDimArray&lt;·TContainer,·Extents·&gt;·&amp;multiDimArray)'],
 286 ········['../namespacegmx.xhtml#adc38f264fbd12f7c458acaa006bafc23',·1,·'gmx::end(const·BasicMdspan·&amp;basicMdspan)']
287 ····]],287 ····]],
288 ····['end_5f_169',·['end_',·['../classgmx_1_1SelectionParserSymbolIterator_1_1Impl.xhtml#adaad6e3477afb09f0ebce0ad91d3bd6d',·1,·'gmx::SelectionParserSymbolIterator::Impl']]],288 ····['end_5f_169',·['end_',·['../classgmx_1_1SelectionParserSymbolIterator_1_1Impl.xhtml#adaad6e3477afb09f0ebce0ad91d3bd6d',·1,·'gmx::SelectionParserSymbolIterator::Impl']]],
289 ····['end_5faction_170',·['END_ACTION',·['../parser__internal_8h.xhtml#a8cff21a873fa69df9a845af194a2bb38',·1,·'parser_internal.h']]],289 ····['end_5faction_170',·['END_ACTION',·['../parser__internal_8h.xhtml#a8cff21a873fa69df9a845af194a2bb38',·1,·'parser_internal.h']]],
290 ····['end_5faction_5ftoplevel_171',·['END_ACTION_TOPLEVEL',·['../parser__internal_8h.xhtml#ac78a505847a3259da9fdc0ab88fd97f2',·1,·'parser_internal.h']]],290 ····['end_5faction_5ftoplevel_171',·['END_ACTION_TOPLEVEL',·['../parser__internal_8h.xhtml#ac78a505847a3259da9fdc0ab88fd97f2',·1,·'parser_internal.h']]],
291 ····['endianswapbehavior_172',·['EndianSwapBehavior',·['../namespacegmx.xhtml#a9dcfc375435eb5edc0e45544fd43e655',·1,·'gmx']]],291 ····['endianswapbehavior_172',·['EndianSwapBehavior',·['../namespacegmx.xhtml#a9dcfc375435eb5edc0e45544fd43e655',·1,·'gmx']]],
292 ····['endindex_173',·['endIndex',·['../structgmx_1_1SelectionLocation.xhtml#a41e340847acbb630e084602422793e99',·1,·'gmx::SelectionLocation']]],292 ····['endindex_173',·['endIndex',·['../structgmx_1_1SelectionLocation.xhtml#a41e340847acbb630e084602422793e99',·1,·'gmx::SelectionLocation']]],
293 ····['enditerator_174',·['endIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#aa020bd1b932f67be6353e08f48d990da',·1,·'gmx::SelectionParserSymbolTable']]],293 ····['enditerator_174',·['endIterator',·['../classgmx_1_1SelectionParserSymbolTable.xhtml#aa020bd1b932f67be6353e08f48d990da',·1,·'gmx::SelectionParserSymbolTable']]],
Offset 336, 16 lines modifiedOffset 336, 16 lines modified
336 ····['energyanalysis_197',·['Framework·for·Energy·Analysis·(energyanalysis)',·['../group__module__energyanalysis.xhtml',·1,·'']]],336 ····['energyanalysis_197',·['Framework·for·Energy·Analysis·(energyanalysis)',·['../group__module__energyanalysis.xhtml',·1,·'']]],
337 ····['energyanalysisframe_198',·['energyanalysisframe',·['../classgmx_1_1EnergyAnalysisFrame.xhtml',·1,·'gmx::EnergyAnalysisFrame'],337 ····['energyanalysisframe_198',·['energyanalysisframe',·['../classgmx_1_1EnergyAnalysisFrame.xhtml',·1,·'gmx::EnergyAnalysisFrame'],
338 ········['../classgmx_1_1EnergyAnalysisFrame.xhtml#a81020ccdbb438991874599c3d918ce6d',·1,·'gmx::EnergyAnalysisFrame::EnergyAnalysisFrame()']338 ········['../classgmx_1_1EnergyAnalysisFrame.xhtml#a81020ccdbb438991874599c3d918ce6d',·1,·'gmx::EnergyAnalysisFrame::EnergyAnalysisFrame()']
339 ····]],339 ····]],
340 ····['energyanalysisframe_2eh_199',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],340 ····['energyanalysisframe_2eh_199',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],
341 ····['energyanalysisframeiterator_200',·['EnergyAnalysisFrameIterator',·['../namespacegmx.xhtml#a8b00d593af8bea5c006bcefb9f4c1bad',·1,·'gmx']]],341 ····['energyanalysisframeiterator_200',·['EnergyAnalysisFrameIterator',·['../namespacegmx.xhtml#a8b00d593af8bea5c006bcefb9f4c1bad',·1,·'gmx']]],
342 ····['energyattime_201',·['energyAtTime',·['../classgmx_1_1EnergyAnalysisFrame.xhtml#a59d6f3fbf68ecbecc0f4f9dd461be282',·1,·'gmx::EnergyAnalysisFrame']]],342 ····['energyattime_201',·['energyAtTime',·['../classgmx_1_1EnergyAnalysisFrame.xhtml#a59d6f3fbf68ecbecc0f4f9dd461be282',·1,·'gmx::EnergyAnalysisFrame']]],
343 ····['energycalculationfrequencyerrors_202',·['energycalculationfrequencyerrors',·['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml',·1,·'gmx::EnergyCalculationFrequencyErrors'],343 ····['energycalculationfrequencyerrors_202',·['energycalculationfrequencyerrors',·['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml#adce9d3a3f423d7614edd41d3b5995a9d',·1,·'gmx::EnergyCalculationFrequencyErrors::EnergyCalculationFrequencyErrors()'],
344 ········['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml#adce9d3a3f423d7614edd41d3b5995a9d',·1,·'gmx::EnergyCalculationFrequencyErrors::EnergyCalculationFrequencyErrors(int64_t·energyCalculationIntervalInSteps)']344 ········['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml',·1,·'gmx::EnergyCalculationFrequencyErrors']
345 ····]],345 ····]],
346 ····['energycalculationintervalinsteps_203',·['energyCalculationIntervalInSteps',·['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml#aef314fecdfd6fecc617d309358b9fb30',·1,·'gmx::EnergyCalculationFrequencyErrors']]],346 ····['energycalculationintervalinsteps_203',·['energyCalculationIntervalInSteps',·['../classgmx_1_1EnergyCalculationFrequencyErrors.xhtml#aef314fecdfd6fecc617d309358b9fb30',·1,·'gmx::EnergyCalculationFrequencyErrors']]],
347 ····['energycomparison_204',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],347 ····['energycomparison_204',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'],
348 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']348 ········['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()']
349 ····]],349 ····]],
350 ····['energycomparison_2ecpp_205',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],350 ····['energycomparison_2ecpp_205',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
351 ····['energycomparison_2eh_206',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],351 ····['energycomparison_2eh_206',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
Offset 356, 16 lines modifiedOffset 356, 16 lines modified
356 ····]],356 ····]],
357 ····['energydata_20tt_210',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],357 ····['energydata_20tt_210',·['&lt;tt&gt;EnergyData&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]],
358 ····['energydata_2ecpp_211',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],358 ····['energydata_2ecpp_211',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
359 ····['energydata_2eh_212',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],359 ····['energydata_2eh_212',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
360 ····['energydata_3a_3aelement_20tt_213',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],360 ····['energydata_3a_3aelement_20tt_213',·['&lt;tt&gt;EnergyData::Element&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]],
361 ····['energydrift_214',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],361 ····['energydrift_214',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]],
362 ····['energydriftstring_215',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],362 ····['energydriftstring_215',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]],
363 ····['energydrifttracker_216',·['energydrifttracker',·['../classgmx_1_1EnergyDriftTracker.xhtml',·1,·'gmx::EnergyDriftTracker'], 
364 ········['../classgmx_1_1EnergyDriftTracker.xhtml#ad3c5c99fef9e4a965773bf78c78a124e',·1,·'gmx::EnergyDriftTracker::EnergyDriftTracker()']363 ····['energydrifttracker_216',·['energydrifttracker',·['../classgmx_1_1EnergyDriftTracker.xhtml#ad3c5c99fef9e4a965773bf78c78a124e',·1,·'gmx::EnergyDriftTracker::EnergyDriftTracker()'],
 364 ········['../classgmx_1_1EnergyDriftTracker.xhtml',·1,·'gmx::EnergyDriftTracker']
365 ····]],365 ····]],
366 ····['energydrifttracker_2ecpp_217',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],366 ····['energydrifttracker_2ecpp_217',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],
367 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']367 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']
368 ····]],368 ····]],
369 ····['energydrifttracker_2eh_218',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],369 ····['energydrifttracker_2eh_218',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],
370 ····['energyevaluator_219',·['EnergyEvaluator',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml',·1,·'anonymous_namespace{minimize.cpp}']]],370 ····['energyevaluator_219',·['EnergyEvaluator',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml',·1,·'anonymous_namespace{minimize.cpp}']]],
371 ····['energyfile_5f_220',·['energyFile_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a977820643cf6286318747b49f78917c4',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],371 ····['energyfile_5f_220',·['energyFile_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a977820643cf6286318747b49f78917c4',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],
Offset 376, 19 lines modifiedOffset 376, 19 lines modified
376 ····['energyframereader_223',·['energyframereader',·['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#ac1150a09a747c3c269b037ccb4ffa6f7',·1,·'gmx::test::EnergyFrameReader::EnergyFrameReader()'],376 ····['energyframereader_223',·['energyframereader',·['../classgmx_1_1test_1_1EnergyFrameReader.xhtml#ac1150a09a747c3c269b037ccb4ffa6f7',·1,·'gmx::test::EnergyFrameReader::EnergyFrameReader()'],
377 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml',·1,·'gmx::test::EnergyFrameReader']377 ········['../classgmx_1_1test_1_1EnergyFrameReader.xhtml',·1,·'gmx::test::EnergyFrameReader']
378 ····]],378 ····]],
379 ····['energyframereaderptr_224',·['EnergyFrameReaderPtr',·['../namespacegmx_1_1test.xhtml#adaf53810da1094987057767b0714fb27',·1,·'gmx::test']]],379 ····['energyframereaderptr_224',·['EnergyFrameReaderPtr',·['../namespacegmx_1_1test.xhtml#adaf53810da1094987057767b0714fb27',·1,·'gmx::test']]],
380 ····['energyfunctionproperties_225',·['EnergyFunctionProperties',·['../structgmx_1_1EnergyFunctionProperties.xhtml',·1,·'gmx']]],380 ····['energyfunctionproperties_225',·['EnergyFunctionProperties',·['../structgmx_1_1EnergyFunctionProperties.xhtml',·1,·'gmx']]],
381 ····['energygrouppair_226',·['energyGroupPair',·['../structt__nblist_1_1IEntry.xhtml#a66115d383c9d9aeb4934800045821f03',·1,·'t_nblist::IEntry']]],381 ····['energygrouppair_226',·['energyGroupPair',·['../structt__nblist_1_1IEntry.xhtml#a66115d383c9d9aeb4934800045821f03',·1,·'t_nblist::IEntry']]],
382 ····['energygroupspercluster_227',·['energygroupspercluster',·['../classgmx_1_1EnergyGroupsPerCluster.xhtml',·1,·'gmx::EnergyGroupsPerCluster'],382 ····['energygroupspercluster_227',·['energygroupspercluster',·['../classgmx_1_1EnergyGroupsPerCluster.xhtml',·1,·'gmx::EnergyGroupsPerCluster'],
 383 ········['../classgmx_1_1EnergyGroupsPerCluster.xhtml#a8e8dfa2d7a46ad55fecf134b0cb1443c',·1,·'gmx::EnergyGroupsPerCluster::EnergyGroupsPerCluster()'],
383 ········['../structgmx_1_1nbnxn__atomdata__t_1_1Params.xhtml#a8efa8e61f98994bc8d1c6fd25c0477e1',·1,·'gmx::nbnxn_atomdata_t::Params::energyGroupsPerCluster'],384 ········['../structgmx_1_1nbnxn__atomdata__t_1_1Params.xhtml#a8efa8e61f98994bc8d1c6fd25c0477e1',·1,·'gmx::nbnxn_atomdata_t::Params::energyGroupsPerCluster']
384 ········['../classgmx_1_1EnergyGroupsPerCluster.xhtml#a8e8dfa2d7a46ad55fecf134b0cb1443c',·1,·'gmx::EnergyGroupsPerCluster::EnergyGroupsPerCluster()'] 
385 ····]],385 ····]],
386 ····['energyhandling_228',·['energyhandling',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a1140c917ee190783251e592c69de1169',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::energyHandling'], 
387 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelInputParameters.xhtml#a43ee3d83daa25e8b9df5fe800ab5da95',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelInputParameters::energyHandling'],386 ····['energyhandling_228',·['energyhandling',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelInputParameters.xhtml#a43ee3d83daa25e8b9df5fe800ab5da95',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelInputParameters::energyHandling'],
 387 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a1140c917ee190783251e592c69de1169',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::energyHandling'],
388 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ac10927d3b7039c99adda45a70deb5114',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::EnergyHandling']388 ········['../namespacegmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03.xhtml#ac10927d3b7039c99adda45a70deb5114',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::EnergyHandling']
389 ····]],389 ····]],
390 ····['energyhistory_229',·['energyHistory',·['../structObservablesHistory.xhtml#ae615567a51c963f9afdf413f60f65b21',·1,·'ObservablesHistory']]],390 ····['energyhistory_229',·['energyHistory',·['../structObservablesHistory.xhtml#ae615567a51c963f9afdf413f60f65b21',·1,·'ObservablesHistory']]],
391 ····['energyhistory_2eh_230',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],391 ····['energyhistory_2eh_230',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],
392 ····['energyintegratortype_231',·['EnergyIntegratorType',·['../namespacegmx_1_1test_1_1anonymous__namespace_02initialconstraints_8cpp_03.xhtml#adc18c3f11a09cc6e57e948ae3609784d',·1,·'gmx::test::anonymous_namespace{initialconstraints.cpp}']]],392 ····['energyintegratortype_231',·['EnergyIntegratorType',·['../namespacegmx_1_1test_1_1anonymous__namespace_02initialconstraints_8cpp_03.xhtml#adc18c3f11a09cc6e57e948ae3609784d',·1,·'gmx::test::anonymous_namespace{initialconstraints.cpp}']]],
393 ····['energyminimizationtest_232',·['EnergyMinimizationTest',·['../classgmx_1_1test_1_1anonymous__namespace_02minimize_8cpp_03_1_1EnergyMinimizationTest.xhtml',·1,·'gmx::test::anonymous_namespace{minimize.cpp}']]],393 ····['energyminimizationtest_232',·['EnergyMinimizationTest',·['../classgmx_1_1test_1_1anonymous__namespace_02minimize_8cpp_03_1_1EnergyMinimizationTest.xhtml',·1,·'gmx::test::anonymous_namespace{minimize.cpp}']]],
394 ····['energyname_233',·['energyName',·['../structgmx_1_1EnergyNameUnit.xhtml#a2ad52ee36630c7369401732ee0acb572',·1,·'gmx::EnergyNameUnit']]],394 ····['energyname_233',·['energyName',·['../structgmx_1_1EnergyNameUnit.xhtml#a2ad52ee36630c7369401732ee0acb572',·1,·'gmx::EnergyNameUnit']]],
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Offset 480, 51 lines modifiedOffset 480, 51 lines modified
480 ····['floatoptioninfo_268',·['floatoptioninfo',·['../classgmx_1_1FloatOptionInfo.xhtml',·1,·'gmx::FloatOptionInfo'],480 ····['floatoptioninfo_268',·['floatoptioninfo',·['../classgmx_1_1FloatOptionInfo.xhtml',·1,·'gmx::FloatOptionInfo'],
481 ········['../classgmx_1_1FloatOptionInfo.xhtml#a56d27f92c0cffbd7b148ad626581bc4a',·1,·'gmx::FloatOptionInfo::FloatOptionInfo()']481 ········['../classgmx_1_1FloatOptionInfo.xhtml#a56d27f92c0cffbd7b148ad626581bc4a',·1,·'gmx::FloatOptionInfo::FloatOptionInfo()']
482 ····]],482 ····]],
483 ····['floatoptionstorage_269',·['floatoptionstorage',·['../classgmx_1_1FloatOptionStorage.xhtml',·1,·'gmx::FloatOptionStorage'],483 ····['floatoptionstorage_269',·['floatoptionstorage',·['../classgmx_1_1FloatOptionStorage.xhtml',·1,·'gmx::FloatOptionStorage'],
484 ········['../classgmx_1_1FloatOptionStorage.xhtml#a128b881ed6dc5c9144478747527f0f02',·1,·'gmx::FloatOptionStorage::FloatOptionStorage()'],484 ········['../classgmx_1_1FloatOptionStorage.xhtml#a128b881ed6dc5c9144478747527f0f02',·1,·'gmx::FloatOptionStorage::FloatOptionStorage()'],
485 ········['../classgmx_1_1FloatOption.xhtml#a9737ae8c8d40af054a7e8680ebb04856',·1,·'gmx::FloatOption::FloatOptionStorage']485 ········['../classgmx_1_1FloatOption.xhtml#a9737ae8c8d40af054a7e8680ebb04856',·1,·'gmx::FloatOption::FloatOptionStorage']
486 ····]],486 ····]],
487 ····['floattoler_270',·['floattoler',·['../structgmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03_1_1ListInput.xhtml#a004e5e8bdf0447d1694d70558d49fa32',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::ListInput::floatToler'], 
488 ········['../structgmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03_1_1ListInput.xhtml#ad83dd3751d1e1866fe0f858204d6fc2d',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput::floatToler']487 ····['floattoler_270',·['floattoler',·['../structgmx_1_1test_1_1anonymous__namespace_02nb__free__energy_8cpp_03_1_1ListInput.xhtml#ad83dd3751d1e1866fe0f858204d6fc2d',·1,·'gmx::test::anonymous_namespace{nb_free_energy.cpp}::ListInput::floatToler'],
 488 ········['../structgmx_1_1test_1_1anonymous__namespace_02pairs_8cpp_03_1_1ListInput.xhtml#a004e5e8bdf0447d1694d70558d49fa32',·1,·'gmx::test::anonymous_namespace{pairs.cpp}::ListInput::floatToler']
489 ····]],489 ····]],
490 ····['floattypematcher_271',·['floattypematcher',·['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml',·1,·'gmx::test::FloatTypeMatcher&lt;·FloatType·&gt;'],490 ····['floattypematcher_271',·['floattypematcher',·['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml',·1,·'gmx::test::FloatTypeMatcher&lt;·FloatType·&gt;'],
491 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a349d8c2cfc013ef8e63a9eab29df4c44',·1,·'gmx::test::FloatTypeMatcher::FloatTypeMatcher()']491 ········['../classgmx_1_1test_1_1FloatTypeMatcher.xhtml#a349d8c2cfc013ef8e63a9eab29df4c44',·1,·'gmx::test::FloatTypeMatcher::FloatTypeMatcher()']
492 ····]],492 ····]],
493 ····['flood_5fblowup_272',·['flood_blowup',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa027c1bd075c6b731318b7e4787b7cb9',·1,·'anonymous_namespace{edsam.cpp}']]],493 ····['flood_5fblowup_272',·['flood_blowup',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa027c1bd075c6b731318b7e4787b7cb9',·1,·'anonymous_namespace{edsam.cpp}']]],
494 ····['flooding_273',·['Flooding',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa2d5ea43ccd104c8b0f1f2e7b8cad0c4ac244d080617e096f13d28a4fdf82b8d9',·1,·'anonymous_namespace{edsam.cpp}']]],494 ····['flooding_273',·['Flooding',·['../namespaceanonymous__namespace_02edsam_8cpp_03.xhtml#aa2d5ea43ccd104c8b0f1f2e7b8cad0c4ac244d080617e096f13d28a4fdf82b8d9',·1,·'anonymous_namespace{edsam.cpp}']]],
495 ····['flush_274',·['flush',·['../classgmx_1_1H5md.xhtml#abd7f76a350d35c40723a6eca5c1b7757',·1,·'gmx::H5md']]],495 ····['flush_274',·['flush',·['../classgmx_1_1H5md.xhtml#abd7f76a350d35c40723a6eca5c1b7757',·1,·'gmx::H5md']]],
496 ····['fluxfromatob_275',·['fluxfromAtoB',·['../structswap__group.xhtml#a7a42dc9ddd2ea5f6b175b13f6f66e366',·1,·'swap_group']]],496 ····['fluxfromatob_275',·['fluxfromAtoB',·['../structswap__group.xhtml#a7a42dc9ddd2ea5f6b175b13f6f66e366',·1,·'swap_group']]],
497 ····['fluxleak_276',·['fluxleak',·['../structt__swap.xhtml#a32bdda08730e7830c060235c17dd72e2',·1,·'t_swap']]],497 ····['fluxleak_276',·['fluxleak',·['../structt__swap.xhtml#a32bdda08730e7830c060235c17dd72e2',·1,·'t_swap']]],
 498 ····['fma_277',·['fma',·['../namespacegmx.xhtml#a183d89182d418bb66a668104978af5bf',·1,·'gmx::fma(float·a,·float·b,·float·c)'],
498 ····['fma_277',·['fma',·['../group__module__simd.xhtml#ga3b86949473ebaef8ccbd4d2852947839',·1,·'gmx::fma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'], 
499 ········['../group__module__simd.xhtml#ga6969c0baf1592d7a5fec29636a85628f',·1,·'gmx::fma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'], 
500 ········['../group__module__simd.xhtml#gaa2db026253ce788e7f136326089e8a77',·1,·'gmx::fma(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'], 
501 ········['../group__module__simd.xhtml#ga68d608d0650ac219cb4c0d3034ee855f',·1,·'gmx::fma(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],499 ········['../group__module__simd.xhtml#ga68d608d0650ac219cb4c0d3034ee855f',·1,·'gmx::fma(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],
 500 ········['../group__module__simd.xhtml#gaa2db026253ce788e7f136326089e8a77',·1,·'gmx::fma(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],
 501 ········['../group__module__simd.xhtml#ga3b86949473ebaef8ccbd4d2852947839',·1,·'gmx::fma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],
502 ········['../namespacegmx.xhtml#a79e2ba07938cafa28c0988ba52874f46',·1,·'gmx::fma(double·a,·double·b,·double·c)'],502 ········['../namespacegmx.xhtml#a79e2ba07938cafa28c0988ba52874f46',·1,·'gmx::fma(double·a,·double·b,·double·c)'],
503 ········['../namespacegmx.xhtml#a183d89182d418bb66a668104978af5bf',·1,·'gmx::fma(float·a,·float·b,·float·c)']503 ········['../group__module__simd.xhtml#ga6969c0baf1592d7a5fec29636a85628f',·1,·'gmx::fma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)']
504 ····]],504 ····]],
505 ····['fmax_278',·['fmax',·['../structem__state.xhtml#aab39c5b16c1d58a45a5c973133e5ffc5',·1,·'em_state']]],505 ····['fmax_278',·['fmax',·['../structem__state.xhtml#aab39c5b16c1d58a45a5c973133e5ffc5',·1,·'em_state']]],
 506 ····['fms_279',·['fms',·['../group__module__simd.xhtml#gafb3861a4cc7cae530fcf5bf83955da1b',·1,·'gmx::fms(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],
506 ····['fms_279',·['fms',·['../namespacegmx.xhtml#afad947f51589a3a9eef2f8364ab62c19',·1,·'gmx::fms(float·a,·float·b,·float·c)'], 
507 ········['../namespacegmx.xhtml#abcb2c8942d173c6a9964940f90c55b2a',·1,·'gmx::fms(double·a,·double·b,·double·c)'], 
508 ········['../group__module__simd.xhtml#ga86c14cb73d3484b0a5e01e74640a4ee3',·1,·'gmx::fms(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],507 ········['../group__module__simd.xhtml#ga86c14cb73d3484b0a5e01e74640a4ee3',·1,·'gmx::fms(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],
509 ········['../group__module__simd.xhtml#ga78a3204bd78e9122ba1998e985d1a5bd',·1,·'gmx::fms(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],508 ········['../group__module__simd.xhtml#ga78a3204bd78e9122ba1998e985d1a5bd',·1,·'gmx::fms(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],
510 ········['../group__module__simd.xhtml#gafb3861a4cc7cae530fcf5bf83955da1b',·1,·'gmx::fms(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'], 
511 ········['../group__module__simd.xhtml#ga075eeabb5171e4f74cdd74e2f97bab5c',·1,·'gmx::fms(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)']509 ········['../group__module__simd.xhtml#ga075eeabb5171e4f74cdd74e2f97bab5c',·1,·'gmx::fms(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'],
 510 ········['../namespacegmx.xhtml#afad947f51589a3a9eef2f8364ab62c19',·1,·'gmx::fms(float·a,·float·b,·float·c)'],
 511 ········['../namespacegmx.xhtml#abcb2c8942d173c6a9964940f90c55b2a',·1,·'gmx::fms(double·a,·double·b,·double·c)']
512 ····]],512 ····]],
513 ····['fn_280',·['fn',·['../structt__filenm.xhtml#a72019255079f0fc2a11bd80f4341ab60',·1,·'t_filenm']]],513 ····['fn_280',·['fn',·['../structt__filenm.xhtml#a72019255079f0fc2a11bd80f4341ab60',·1,·'t_filenm']]],
514 ····['fnm_5f_281',·['fnm_',·['../classgmx_1_1LegacySimulatorData.xhtml#a4647ed87898459d84908b057760d5c00',·1,·'gmx::LegacySimulatorData']]],514 ····['fnm_5f_281',·['fnm_',·['../classgmx_1_1LegacySimulatorData.xhtml#a4647ed87898459d84908b057760d5c00',·1,·'gmx::LegacySimulatorData']]],
 515 ····['fnma_282',·['fnma',·['../group__module__simd.xhtml#gae9ec59669729860c9efd1b9c70f3911b',·1,·'gmx::fnma(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],
515 ····['fnma_282',·['fnma',·['../group__module__simd.xhtml#gaaf4df87eca51bb2f57ffe0bcb1c9de02',·1,·'gmx::fnma(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],516 ········['../group__module__simd.xhtml#gaaf4df87eca51bb2f57ffe0bcb1c9de02',·1,·'gmx::fnma(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],
516 ········['../namespacegmx.xhtml#a55183d689ab9328c18c3b3f819bd7266',·1,·'gmx::fnma(float·a,·float·b,·float·c)'],517 ········['../namespacegmx.xhtml#adcf7849c8ce1bbbe3e2fecffedfc05e8',·1,·'gmx::fnma(double·a,·double·b,·double·c)'],
517 ········['../group__module__simd.xhtml#ga6be2e3e5adbdf49e6468c8a2d638658d',·1,·'gmx::fnma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'],518 ········['../group__module__simd.xhtml#ga6be2e3e5adbdf49e6468c8a2d638658d',·1,·'gmx::fnma(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'],
 519 ········['../namespacegmx.xhtml#a55183d689ab9328c18c3b3f819bd7266',·1,·'gmx::fnma(float·a,·float·b,·float·c)'],
518 ········['../group__module__simd.xhtml#gaaeca5c242a059145a90dc091db78ad57',·1,·'gmx::fnma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],520 ········['../group__module__simd.xhtml#gaaeca5c242a059145a90dc091db78ad57',·1,·'gmx::fnma(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)']
519 ········['../group__module__simd.xhtml#gae9ec59669729860c9efd1b9c70f3911b',·1,·'gmx::fnma(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'], 
520 ········['../namespacegmx.xhtml#adcf7849c8ce1bbbe3e2fecffedfc05e8',·1,·'gmx::fnma(double·a,·double·b,·double·c)'] 
521 ····]],521 ····]],
 522 ····['fnms_283',·['fnms',·['../namespacegmx.xhtml#ad9bd8328d5cbdb7f6a054b877183f277',·1,·'gmx::fnms(double·a,·double·b,·double·c)'],
522 ····['fnms_283',·['fnms',·['../group__module__simd.xhtml#gac7afe2f2f840c1de18cb7c61917ba11c',·1,·'gmx::fnms(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],523 ········['../group__module__simd.xhtml#gac7afe2f2f840c1de18cb7c61917ba11c',·1,·'gmx::fnms(Simd4Double·a,·Simd4Double·b,·Simd4Double·c)'],
523 ········['../namespacegmx.xhtml#ad9bd8328d5cbdb7f6a054b877183f277',·1,·'gmx::fnms(double·a,·double·b,·double·c)'], 
524 ········['../group__module__simd.xhtml#gace0a9be42a2c83de88e9de207cd82e80',·1,·'gmx::fnms(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],524 ········['../group__module__simd.xhtml#gace0a9be42a2c83de88e9de207cd82e80',·1,·'gmx::fnms(Simd4Float·a,·Simd4Float·b,·Simd4Float·c)'],
525 ········['../group__module__simd.xhtml#ga44d26f7a7b8d6088d41be0b646f71543',·1,·'gmx::fnms(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],525 ········['../group__module__simd.xhtml#ga44d26f7a7b8d6088d41be0b646f71543',·1,·'gmx::fnms(SimdDouble·a,·SimdDouble·b,·SimdDouble·c)'],
526 ········['../group__module__simd.xhtml#gaf8fe2e25414c377f8ed03d5c23f84963',·1,·'gmx::fnms(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'],526 ········['../group__module__simd.xhtml#gaf8fe2e25414c377f8ed03d5c23f84963',·1,·'gmx::fnms(SimdFloat·a,·SimdFloat·b,·SimdFloat·c)'],
527 ········['../namespacegmx.xhtml#aa6e6950597f4833fa93b09a94e7b0e16',·1,·'gmx::fnms(float·a,·float·b,·float·c)']527 ········['../namespacegmx.xhtml#aa6e6950597f4833fa93b09a94e7b0e16',·1,·'gmx::fnms(float·a,·float·b,·float·c)']
528 ····]],528 ····]],
529 ····['fnorm_284',·['fnorm',·['../structem__state.xhtml#a43339ea26f0470b9588c0b8cc1dc105f',·1,·'em_state']]],529 ····['fnorm_284',·['fnorm',·['../structem__state.xhtml#a43339ea26f0470b9588c0b8cc1dc105f',·1,·'em_state']]],
530 ····['fnpullx_285',·['fnPullx',·['../structUmbrellaOptions.xhtml#ad5da6a328592ff1ada6dee0fb0f6e65a',·1,·'UmbrellaOptions']]],530 ····['fnpullx_285',·['fnPullx',·['../structUmbrellaOptions.xhtml#ad5da6a328592ff1ada6dee0fb0f6e65a',·1,·'UmbrellaOptions']]],
Offset 538, 132 lines modifiedOffset 538, 132 lines modified
538 ····['for_20online_20help_20onlinehelp_291',·['Help·Formatting·for·Online·Help·(onlinehelp)',·['../group__module__onlinehelp.xhtml',·1,·'']]],538 ····['for_20online_20help_20onlinehelp_291',·['Help·Formatting·for·Online·Help·(onlinehelp)',·['../group__module__onlinehelp.xhtml',·1,·'']]],
539 ····['for_20parallelization_20over_20mpi_292',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],539 ····['for_20parallelization_20over_20mpi_292',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
540 ····['for_20simulation_20functionality_293',·['Modules·for·simulation·functionality',·['../group__group__mdrun.xhtml',·1,·'']]],540 ····['for_20simulation_20functionality_293',·['Modules·for·simulation·functionality',·['../group__group__mdrun.xhtml',·1,·'']]],
541 ····['for_20table_20interpolation_294',·['Classes·for·table·interpolation',·['../group__module__tables.xhtml',·1,·'']]],541 ····['for_20table_20interpolation_294',·['Classes·for·table·interpolation',·['../group__module__tables.xhtml',·1,·'']]],
542 ····['for_20trajectory_20analysis_295',·['Framework·for·trajectory·analysis',·['../page_trajectoryanalysisframework.xhtml',·1,·'index']]],542 ····['for_20trajectory_20analysis_295',·['Framework·for·trajectory·analysis',·['../page_trajectoryanalysisframework.xhtml',·1,·'index']]],
543 ····['for_20trajectory_20analysis_20trajectoryanalysis_296',·['Framework·for·Trajectory·Analysis·(trajectoryanalysis)',·['../group__module__trajectoryanalysis.xhtml',·1,·'']]],543 ····['for_20trajectory_20analysis_20trajectoryanalysis_296',·['Framework·for·Trajectory·Analysis·(trajectoryanalysis)',·['../group__module__trajectoryanalysis.xhtml',·1,·'']]],
544 ····['for_20writing_20trajectory_20analysis_20tools_297',·['Example·code·for·writing·trajectory·analysis·tools',·['../page_analysistemplate.xhtml',·1,·'page_trajectoryanalysisframework']]],544 ····['for_20writing_20trajectory_20analysis_20tools_297',·['Example·code·for·writing·trajectory·analysis·tools',·['../page_analysistemplate.xhtml',·1,·'page_trajectoryanalysisframework']]],
545 ····['force_298',·['force',·['../classgmx_1_1ForceWithShiftForces.xhtml#a8f445fcff4ac77e2d1a8f30549d0c9db',·1,·'gmx::ForceWithShiftForces::force()'], 
546 ········['../classgmx_1_1ForceWithShiftForces.xhtml#add3a9163642b6d9de3fcbde97a915367',·1,·'gmx::ForceWithShiftForces::force()·const'], 
547 ········['../classgmx_1_1ForceWithVirial.xhtml#ad25910af0c94cb815ea449a8abc98bb6',·1,·'gmx::ForceWithVirial::force()'], 
548 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a8368ed9391852766220fbcc15f0cfa4b',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::force()'],545 ····['force_298',·['force',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a8368ed9391852766220fbcc15f0cfa4b',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::force()'],
549 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#aa5ee50c3018d666bc34a40aaada3fdda',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::force()'],546 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#aa5ee50c3018d666bc34a40aaada3fdda',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::force()'],
 547 ········['../structgmx_1_1OutputRequirements.xhtml#af7887fe29814bb6c293caab071825e5c',·1,·'gmx::OutputRequirements::force'],
550 ········['../classgmx_1_1ForceBuffersView.xhtml#ad7c5a0f7375ecac77c5a53edbf44c4cc',·1,·'gmx::ForceBuffersView::force()'], 
551 ········['../classgmx_1_1ForceBuffersView.xhtml#a0effcf1ae82ec7bd85d78284a6015212',·1,·'gmx::ForceBuffersView::force()·const'], 
552 ········['../classgmx_1_1PotentialPointData.xhtml#a6c7b261cec1253b0b6c948f93e9c9f9e',·1,·'gmx::PotentialPointData::force'], 
553 ········['../structgmx_1_1InterdependentTask.xhtml#ab2cd1e5146ad30158e6064f65654035f',·1,·'gmx::InterdependentTask::force'],548 ········['../structgmx_1_1InterdependentTask.xhtml#ab2cd1e5146ad30158e6064f65654035f',·1,·'gmx::InterdependentTask::force'],
554 ········['../structgmx_1_1OutputRequirements.xhtml#af7887fe29814bb6c293caab071825e5c',·1,·'gmx::OutputRequirements::force']549 ········['../classgmx_1_1PotentialPointData.xhtml#a6c7b261cec1253b0b6c948f93e9c9f9e',·1,·'gmx::PotentialPointData::force'],
 550 ········['../classgmx_1_1ForceWithShiftForces.xhtml#add3a9163642b6d9de3fcbde97a915367',·1,·'gmx::ForceWithShiftForces::force()'],
 551 ········['../classgmx_1_1ForceWithVirial.xhtml#ad25910af0c94cb815ea449a8abc98bb6',·1,·'gmx::ForceWithVirial::force()'],
 552 ········['../classgmx_1_1ForceWithShiftForces.xhtml#a8f445fcff4ac77e2d1a8f30549d0c9db',·1,·'gmx::ForceWithShiftForces::force()'],
 553 ········['../classgmx_1_1ForceBuffersView.xhtml#ad7c5a0f7375ecac77c5a53edbf44c4cc',·1,·'gmx::ForceBuffersView::force()'],
 554 ········['../classgmx_1_1ForceBuffersView.xhtml#a0effcf1ae82ec7bd85d78284a6015212',·1,·'gmx::ForceBuffersView::force()·const']
555 ····]],555 ····]],
556 ····['force_5f_299',·['force_',·['../classgmx_1_1ForceWithVirial.xhtml#abfd100d928a758bfa73ab4a4f799bdc0',·1,·'gmx::ForceWithVirial']]],556 ····['force_5f_299',·['force_',·['../classgmx_1_1ForceWithVirial.xhtml#abfd100d928a758bfa73ab4a4f799bdc0',·1,·'gmx::ForceWithVirial']]],
557 ····['force_5fenv_5ft_300',·['force_env_t',·['../namespacegmx.xhtml#a9c7c01b19ef2cbfafccf48919ed40c0e',·1,·'gmx']]],557 ····['force_5fenv_5ft_300',·['force_env_t',·['../namespacegmx.xhtml#a9c7c01b19ef2cbfafccf48919ed40c0e',·1,·'gmx']]],
558 ····['forceandcorrectionenergy_301',·['forceandcorrectionenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#a0f088963f891c0aa832937898b85b79c',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::forceAndCorrectionEnergy()'],558 ····['forceandcorrectionenergy_301',·['forceandcorrectionenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#a0f088963f891c0aa832937898b85b79c',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldTabulated·&gt;::forceAndCorrectionEnergy()'],
559 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldAnalytical_01_4.xhtml#aa60db83ade23a3480f4384659c5fe5db',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldAnalytical·&gt;::forceAndCorrectionEnergy()'],559 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldAnalytical_01_4.xhtml#aa60db83ade23a3480f4384659c5fe5db',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::EwaldAnalytical·&gt;::forceAndCorrectionEnergy()'],
560 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a44357acf0cd6a68b00f2e983e562bfa0',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::forceAndCorrectionEnergy()']560 ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a44357acf0cd6a68b00f2e983e562bfa0',·1,·'gmx::CoulombCalculator&lt;·KernelCoulombType::RF·&gt;::forceAndCorrectionEnergy()']
561 ····]],561 ····]],
562 ····['forceav_302',·['forceAv',·['../structt__UmbrellaWindow.xhtml#a7fe31ae860a78930c63fd3f1cc5410bf',·1,·'t_UmbrellaWindow']]],562 ····['forceav_302',·['forceAv',·['../structt__UmbrellaWindow.xhtml#a7fe31ae860a78930c63fd3f1cc5410bf',·1,·'t_UmbrellaWindow']]],
563 ····['forcebuffer_303',·['forceBuffer',·['../classgmx_1_1ThreadForceBuffer.xhtml#a77f61130c736184b12a25f5ed580b38e',·1,·'gmx::ThreadForceBuffer']]],563 ····['forcebuffer_303',·['forceBuffer',·['../classgmx_1_1ThreadForceBuffer.xhtml#a77f61130c736184b12a25f5ed580b38e',·1,·'gmx::ThreadForceBuffer']]],
564 ····['forcebufferfordirectvirialcontributions_304',·['forceBufferForDirectVirialContributions',·['../classForceHelperBuffers.xhtml#a083fa66a7eb616ec2f3e01532bcb868a',·1,·'ForceHelperBuffers']]],564 ····['forcebufferfordirectvirialcontributions_304',·['forceBufferForDirectVirialContributions',·['../classForceHelperBuffers.xhtml#a083fa66a7eb616ec2f3e01532bcb868a',·1,·'ForceHelperBuffers']]],
565 ····['forcebuffers_305',·['forcebuffers',·['../classgmx_1_1ForceBuffers.xhtml#ace368bdb63c723367e8de41ff03e6ef2',·1,·'gmx::ForceBuffers::ForceBuffers(ForceBuffers·&amp;&amp;o)=delete'],565 ····['forcebuffers_305',·['forcebuffers',·['../classgmx_1_1ForceBuffers.xhtml#ace368bdb63c723367e8de41ff03e6ef2',·1,·'gmx::ForceBuffers::ForceBuffers(ForceBuffers·&amp;&amp;o)=delete'],
566 ········['../classgmx_1_1ForceBuffers.xhtml#af3eccf5e0a3d50fd46117dcf8310d43d',·1,·'gmx::ForceBuffers::ForceBuffers(const·ForceBuffers·&amp;o)=delete'],566 ········['../classgmx_1_1ForceBuffers.xhtml#af3eccf5e0a3d50fd46117dcf8310d43d',·1,·'gmx::ForceBuffers::ForceBuffers(const·ForceBuffers·&amp;o)=delete'],
567 ········['../classgmx_1_1ForceBuffers.xhtml#a097cb3fed169c66c986820121462b0c1',·1,·'gmx::ForceBuffers::ForceBuffers(bool·useForceMtsCombined,·PinningPolicy·pinningPolicy)'],567 ········['../classgmx_1_1ForceBuffers.xhtml#a097cb3fed169c66c986820121462b0c1',·1,·'gmx::ForceBuffers::ForceBuffers(bool·useForceMtsCombined,·PinningPolicy·pinningPolicy)'],
 568 ········['../classgmx_1_1ForceBuffers.xhtml',·1,·'gmx::ForceBuffers'],
568 ········['../classgmx_1_1ForceBuffers.xhtml#a1854ef7ef3e6623ab2cfa73e07597d4a',·1,·'gmx::ForceBuffers::ForceBuffers()'],569 ········['../classgmx_1_1ForceBuffers.xhtml#a1854ef7ef3e6623ab2cfa73e07597d4a',·1,·'gmx::ForceBuffers::ForceBuffers()']
569 ········['../classgmx_1_1ForceBuffers.xhtml',·1,·'gmx::ForceBuffers'] 
570 ····]],570 ····]],
571 ····['forcebuffers_2ecpp_306',·['forcebuffers.cpp',·['../forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)'],571 ····['forcebuffers_2ecpp_306',·['forcebuffers.cpp',·['../tests_2forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)'],
572 ········['../tests_2forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)']572 ········['../forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)']
573 ····]],573 ····]],
574 ····['forcebuffers_2eh_307',·['forcebuffers.h',·['../forcebuffers_8h.xhtml',·1,·'']]],574 ····['forcebuffers_2eh_307',·['forcebuffers.h',·['../forcebuffers_8h.xhtml',·1,·'']]],
575 ····['forcebuffersview_308',·['forcebuffersview',·['../classgmx_1_1ForceBuffersView.xhtml#a3590d4fc647af93ab0f6092f85ed7b1f',·1,·'gmx::ForceBuffersView::ForceBuffersView(const·ArrayRefWithPadding&lt;·RVec·&gt;·&amp;force,·const·ArrayRefWithPadding&lt;·RVec·&gt;·&amp;forceMtsCombined,·const·bool·useForceMtsCombined)'],575 ····['forcebuffersview_308',·['forcebuffersview',·['../classgmx_1_1ForceBuffersView.xhtml#a3590d4fc647af93ab0f6092f85ed7b1f',·1,·'gmx::ForceBuffersView::ForceBuffersView(const·ArrayRefWithPadding&lt;·RVec·&gt;·&amp;force,·const·ArrayRefWithPadding&lt;·RVec·&gt;·&amp;forceMtsCombined,·const·bool·useForceMtsCombined)'],
576 ········['../classgmx_1_1ForceBuffersView.xhtml#a38b40421ab657108d222878f50f54f99',·1,·'gmx::ForceBuffersView::ForceBuffersView(ForceBuffersView·&amp;&amp;o)=delete'], 
577 ········['../classgmx_1_1ForceBuffersView.xhtml#a75e5dfcac0461da9e1ba0671b99e2e19',·1,·'gmx::ForceBuffersView::ForceBuffersView(const·ForceBuffersView·&amp;o)=delete'],576 ········['../classgmx_1_1ForceBuffersView.xhtml#a75e5dfcac0461da9e1ba0671b99e2e19',·1,·'gmx::ForceBuffersView::ForceBuffersView(const·ForceBuffersView·&amp;o)=delete'],
 577 ········['../classgmx_1_1ForceBuffersView.xhtml#a38b40421ab657108d222878f50f54f99',·1,·'gmx::ForceBuffersView::ForceBuffersView(ForceBuffersView·&amp;&amp;o)=delete'],
578 ········['../classgmx_1_1ForceBuffersView.xhtml',·1,·'gmx::ForceBuffersView']578 ········['../classgmx_1_1ForceBuffersView.xhtml',·1,·'gmx::ForceBuffersView']
579 ····]],579 ····]],
580 ····['forcebufferwithpadding_309',·['forceBufferWithPadding',·['../classgmx_1_1ThreadForceBuffer.xhtml#a7f7008c15c676d8f80f80e3e0d8bf170',·1,·'gmx::ThreadForceBuffer']]],580 ····['forcebufferwithpadding_309',·['forceBufferWithPadding',·['../classgmx_1_1ThreadForceBuffer.xhtml#a7f7008c15c676d8f80f80e3e0d8bf170',·1,·'gmx::ThreadForceBuffer']]],
 581 ····['forcec6c12_310',·['forcec6c12',·['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1PotSwitch_01_4.xhtml#a91dad0c034142604295dc9120c1700b0',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::PotSwitch·&gt;::forceC6C12()'],
581 ····['forcec6c12_310',·['forcec6c12',·['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1ForceSwitch_01_4.xhtml#a369a611a138c28c564072449a87c9f74',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::ForceSwitch·&gt;::forceC6C12()'],582 ········['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1ForceSwitch_01_4.xhtml#a369a611a138c28c564072449a87c9f74',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::ForceSwitch·&gt;::forceC6C12()'],
582 ········['../classgmx_1_1LennardJonesCalculator_3_01calculateEnergies_00_01InteractionModifiers_1_1PotSwitch_01_4.xhtml#a91dad0c034142604295dc9120c1700b0',·1,·'gmx::LennardJonesCalculator&lt;·calculateEnergies,·InteractionModifiers::PotSwitch·&gt;::forceC6C12()'], 
583 ········['../classgmx_1_1LennardJonesCalculator_3_01true_00_01InteractionModifiers_1_1PotShift_01_4.xhtml#afc8e334301a5dc5758c76ca667eead87',·1,·'gmx::LennardJonesCalculator&lt;·true,·InteractionModifiers::PotShift·&gt;::forceC6C12()'],583 ········['../classgmx_1_1LennardJonesCalculator_3_01true_00_01InteractionModifiers_1_1PotShift_01_4.xhtml#afc8e334301a5dc5758c76ca667eead87',·1,·'gmx::LennardJonesCalculator&lt;·true,·InteractionModifiers::PotShift·&gt;::forceC6C12()'],
584 ········['../classgmx_1_1LennardJonesCalculator_3_01false_00_01InteractionModifiers_1_1PotShift_01_4.xhtml#ad62d1898885d0433bc488d42783e0f9c',·1,·'gmx::LennardJonesCalculator&lt;·false,·InteractionModifiers::PotShift·&gt;::forceC6C12()']584 ········['../classgmx_1_1LennardJonesCalculator_3_01false_00_01InteractionModifiers_1_1PotShift_01_4.xhtml#ad62d1898885d0433bc488d42783e0f9c',·1,·'gmx::LennardJonesCalculator&lt;·false,·InteractionModifiers::PotShift·&gt;::forceC6C12()']
585 ····]],585 ····]],
586 ····['forceconstant_5f_311',·['forceConstant_',·['../structgmx_1_1DensityFittingParameters.xhtml#a9b0d093a5950b44c54d24ce7f0518db4',·1,·'gmx::DensityFittingParameters']]],586 ····['forceconstant_5f_311',·['forceConstant_',·['../structgmx_1_1DensityFittingParameters.xhtml#a9b0d093a5950b44c54d24ce7f0518db4',·1,·'gmx::DensityFittingParameters']]],
587 ····['forcecorrelationgrid_312',·['forceCorrelationGrid',·['../classgmx_1_1Bias.xhtml#ac0027507979084064f22282d59336983',·1,·'gmx::Bias']]],587 ····['forcecorrelationgrid_312',·['forceCorrelationGrid',·['../classgmx_1_1Bias.xhtml#ac0027507979084064f22282d59336983',·1,·'gmx::Bias']]],
588 ····['forced_313',·['Forced',·['../namespacegmx.xhtml#a6b0776e8436cb38e80d66f0de7c870d8adc2eb84d1f952ad0e6b58014aabd616a',·1,·'gmx']]],588 ····['forced_313',·['Forced',·['../namespacegmx.xhtml#a6b0776e8436cb38e80d66f0de7c870d8adc2eb84d1f952ad0e6b58014aabd616a',·1,·'gmx']]],
589 ····['forceelement_314',·['forceelement',·['../classgmx_1_1ForceElement.xhtml',·1,·'gmx::ForceElement'],589 ····['forceelement_314',·['forceelement',·['../classgmx_1_1ForceElement.xhtml',·1,·'gmx::ForceElement'],
590 ········['../classgmx_1_1ForceElement.xhtml#a5f70589ab35436446dd9bca932b3d7ab',·1,·'gmx::ForceElement::ForceElement()']590 ········['../classgmx_1_1ForceElement.xhtml#a5f70589ab35436446dd9bca932b3d7ab',·1,·'gmx::ForceElement::ForceElement()']
591 ····]],591 ····]],
592 ····['forceelement_20tt_20and_20tt_20shellfcelement_20tt_315',·['&lt;tt&gt;ForceElement&lt;/tt&gt;·and·&lt;tt&gt;ShellFCElement&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md25',·1,·'']]],592 ····['forceelement_20tt_20and_20tt_20shellfcelement_20tt_315',·['&lt;tt&gt;ForceElement&lt;/tt&gt;·and·&lt;tt&gt;ShellFCElement&lt;/tt&gt;',·['../page_modularsimulator.xhtml#autotoc_md25',·1,·'']]],
593 ····['forceelement_2ecpp_316',·['forceelement.cpp',·['../forceelement_8cpp.xhtml',·1,·'']]],593 ····['forceelement_2ecpp_316',·['forceelement.cpp',·['../forceelement_8cpp.xhtml',·1,·'']]],
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5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],
6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],
8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],
9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],
10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
Offset 24, 16 lines modifiedOffset 24, 16 lines modified
24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],
27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],27 ····['analysissettings_2eh_19',·['analysissettings.h',·['../analysissettings_8h.xhtml',·1,·'']]],
28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],28 ····['analysissettings_5fimpl_2eh_20',·['analysissettings_impl.h',·['../analysissettings__impl_8h.xhtml',·1,·'']]],
29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],29 ····['andersentemperaturecoupling_2ecpp_21',·['andersentemperaturecoupling.cpp',·['../andersentemperaturecoupling_8cpp.xhtml',·1,·'']]],
30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],30 ····['andersentemperaturecoupling_2eh_22',·['andersentemperaturecoupling.h',·['../andersentemperaturecoupling_8h.xhtml',·1,·'']]],
31 ····['angle_2ecpp_23',·['angle.cpp',·['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],31 ····['angle_2ecpp_23',·['angle.cpp',·['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)'],
32 ········['../modules_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']32 ········['../tests_2angle_8cpp.xhtml',·1,·'(Global·Namespace)']
33 ····]],33 ····]],
34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],34 ····['angle_2eh_24',·['angle.h',·['../angle_8h.xhtml',·1,·'']]],
35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],35 ····['any_2ecpp_25',·['any.cpp',·['../any_8cpp.xhtml',·1,·'']]],
36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],36 ····['any_2eh_26',·['any.h',·['../any_8h.xhtml',·1,·'']]],
37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],37 ····['architecture_2eh_27',·['architecture.h',·['../architecture_8h.xhtml',·1,·'']]],
38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['arraydata_2ecpp_28',·['arraydata.cpp',·['../tests_2arraydata_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../arraydata_8cpp.xhtml',·1,·'(Global·Namespace)']
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Offset 32, 16 lines modifiedOffset 32, 16 lines modified
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['requirements_2eh_29',·['requirements.h',·['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'],39 ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'],
40 ········['../requirements_8h.xhtml',·1,·'(Global·Namespace)']40 ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],
46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],
47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],
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Offset 63, 16 lines modifiedOffset 63, 16 lines modified
63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],
69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],
70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],
74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],
75 ········['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']75 ········['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']
76 ····]],76 ····]],
77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],
78 ····['settle_2ecpp_60',·['settle.cpp',·['../settle_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['settle_2ecpp_60',·['settle.cpp',·['../settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
Offset 92, 16 lines modifiedOffset 92, 16 lines modified
92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],
93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],
94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],
95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],
96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],
97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],
98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],
99 ····['simd_2eh_79',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)'],99 ····['simd_2eh_79',·['simd.h',·['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)'],
100 ········['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)']100 ········['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)']
101 ····]],101 ····]],
102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],
103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],
104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],
105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],
106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],
Offset 112, 16 lines modifiedOffset 112, 16 lines modified
112 ····['simple_5fmdrun_2ecpp_90',·['simple_mdrun.cpp',·['../simple__mdrun_8cpp.xhtml',·1,·'']]],112 ····['simple_5fmdrun_2ecpp_90',·['simple_mdrun.cpp',·['../simple__mdrun_8cpp.xhtml',·1,·'']]],
113 ····['simulation_5fworkload_2eh_91',·['simulation_workload.h',·['../simulation__workload_8h.xhtml',·1,·'']]],113 ····['simulation_5fworkload_2eh_91',·['simulation_workload.h',·['../simulation__workload_8h.xhtml',·1,·'']]],
114 ····['simulationcontext_2eh_92',·['simulationcontext.h',·['../simulationcontext_8h.xhtml',·1,·'']]],114 ····['simulationcontext_2eh_92',·['simulationcontext.h',·['../simulationcontext_8h.xhtml',·1,·'']]],
115 ····['simulationdatabase_2ecpp_93',·['simulationdatabase.cpp',·['../simulationdatabase_8cpp.xhtml',·1,·'']]],115 ····['simulationdatabase_2ecpp_93',·['simulationdatabase.cpp',·['../simulationdatabase_8cpp.xhtml',·1,·'']]],
116 ····['simulationdatabase_2eh_94',·['simulationdatabase.h',·['../simulationdatabase_8h.xhtml',·1,·'']]],116 ····['simulationdatabase_2eh_94',·['simulationdatabase.h',·['../simulationdatabase_8h.xhtml',·1,·'']]],
117 ····['simulationinput_2eh_95',·['simulationinput.h',·['../simulationinput_8h.xhtml',·1,·'']]],117 ····['simulationinput_2eh_95',·['simulationinput.h',·['../simulationinput_8h.xhtml',·1,·'']]],
118 ····['simulationinputhandle_2eh_96',·['simulationinputhandle.h',·['../simulationinputhandle_8h.xhtml',·1,·'']]],118 ····['simulationinputhandle_2eh_96',·['simulationinputhandle.h',·['../simulationinputhandle_8h.xhtml',·1,·'']]],
119 ····['simulationsignal_2ecpp_97',·['simulationsignal.cpp',·['../simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)'],119 ····['simulationsignal_2ecpp_97',·['simulationsignal.cpp',·['../tests_2simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)'],
120 ········['../tests_2simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)']120 ········['../simulationsignal_8cpp.xhtml',·1,·'(Global·Namespace)']
121 ····]],121 ····]],
122 ····['simulationsignal_2eh_98',·['simulationsignal.h',·['../simulationsignal_8h.xhtml',·1,·'']]],122 ····['simulationsignal_2eh_98',·['simulationsignal.h',·['../simulationsignal_8h.xhtml',·1,·'']]],
123 ····['simulator_2ecpp_99',·['simulator.cpp',·['../simulator_8cpp.xhtml',·1,·'']]],123 ····['simulator_2ecpp_99',·['simulator.cpp',·['../simulator_8cpp.xhtml',·1,·'']]],
124 ····['simulatoralgorithm_2ecpp_100',·['simulatoralgorithm.cpp',·['../simulatoralgorithm_8cpp.xhtml',·1,·'']]],124 ····['simulatoralgorithm_2ecpp_100',·['simulatoralgorithm.cpp',·['../simulatoralgorithm_8cpp.xhtml',·1,·'']]],
125 ····['simulatoralgorithm_2eh_101',·['simulatoralgorithm.h',·['../simulatoralgorithm_8h.xhtml',·1,·'']]],125 ····['simulatoralgorithm_2eh_101',·['simulatoralgorithm.h',·['../simulatoralgorithm_8h.xhtml',·1,·'']]],
126 ····['simulatorbuilder_2ecpp_102',·['simulatorbuilder.cpp',·['../simulatorbuilder_8cpp.xhtml',·1,·'']]],126 ····['simulatorbuilder_2ecpp_102',·['simulatorbuilder.cpp',·['../simulatorbuilder_8cpp.xhtml',·1,·'']]],
127 ····['simulatorcomparison_2ecpp_103',·['simulatorcomparison.cpp',·['../simulatorcomparison_8cpp.xhtml',·1,·'']]],127 ····['simulatorcomparison_2ecpp_103',·['simulatorcomparison.cpp',·['../simulatorcomparison_8cpp.xhtml',·1,·'']]],
Offset 150, 16 lines modifiedOffset 150, 16 lines modified
150 ····['statepropagatordata_2ecpp_126',·['statepropagatordata.cpp',·['../statepropagatordata_8cpp.xhtml',·1,·'']]],150 ····['statepropagatordata_2ecpp_126',·['statepropagatordata.cpp',·['../statepropagatordata_8cpp.xhtml',·1,·'']]],
151 ····['statepropagatordata_2eh_127',·['statepropagatordata.h',·['../statepropagatordata_8h.xhtml',·1,·'']]],151 ····['statepropagatordata_2eh_127',·['statepropagatordata.h',·['../statepropagatordata_8h.xhtml',·1,·'']]],
152 ····['statistics_2eh_128',·['statistics.h',·['../statistics_8h.xhtml',·1,·'']]],152 ····['statistics_2eh_128',·['statistics.h',·['../statistics_8h.xhtml',·1,·'']]],
153 ····['stdiohelper_2ecpp_129',·['stdiohelper.cpp',·['../stdiohelper_8cpp.xhtml',·1,·'']]],153 ····['stdiohelper_2ecpp_129',·['stdiohelper.cpp',·['../stdiohelper_8cpp.xhtml',·1,·'']]],
154 ····['stdiohelper_2eh_130',·['stdiohelper.h',·['../stdiohelper_8h.xhtml',·1,·'']]],154 ····['stdiohelper_2eh_130',·['stdiohelper.h',·['../stdiohelper_8h.xhtml',·1,·'']]],
155 ····['stophandler_2ecpp_131',·['stophandler.cpp',·['../stophandler_8cpp.xhtml',·1,·'']]],155 ····['stophandler_2ecpp_131',·['stophandler.cpp',·['../stophandler_8cpp.xhtml',·1,·'']]],
156 ····['stophandler_2eh_132',·['stophandler.h',·['../stophandler_8h.xhtml',·1,·'']]],156 ····['stophandler_2eh_132',·['stophandler.h',·['../stophandler_8h.xhtml',·1,·'']]],
157 ····['strconvert_2ecpp_133',·['strconvert.cpp',·['../strconvert_8cpp.xhtml',·1,·'(Global·Namespace)'],157 ····['strconvert_2ecpp_133',·['strconvert.cpp',·['../tests_2strconvert_8cpp.xhtml',·1,·'(Global·Namespace)'],
158 ········['../tests_2strconvert_8cpp.xhtml',·1,·'(Global·Namespace)']158 ········['../strconvert_8cpp.xhtml',·1,·'(Global·Namespace)']
159 ····]],159 ····]],
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161 ····['strdb_2eh_135',·['strdb.h',·['../strdb_8h.xhtml',·1,·'']]],161 ····['strdb_2eh_135',·['strdb.h',·['../strdb_8h.xhtml',·1,·'']]],
162 ····['stringcompare_2eh_136',·['stringcompare.h',·['../stringcompare_8h.xhtml',·1,·'']]],162 ····['stringcompare_2eh_136',·['stringcompare.h',·['../stringcompare_8h.xhtml',·1,·'']]],
163 ····['stringstream_2ecpp_137',·['stringstream.cpp',·['../stringstream_8cpp.xhtml',·1,·'']]],163 ····['stringstream_2ecpp_137',·['stringstream.cpp',·['../stringstream_8cpp.xhtml',·1,·'']]],
164 ····['stringstream_2eh_138',·['stringstream.h',·['../stringstream_8h.xhtml',·1,·'']]],164 ····['stringstream_2eh_138',·['stringstream.h',·['../stringstream_8h.xhtml',·1,·'']]],
165 ····['stringtest_2ecpp_139',·['stringtest.cpp',·['../stringtest_8cpp.xhtml',·1,·'']]],165 ····['stringtest_2ecpp_139',·['stringtest.cpp',·['../stringtest_8cpp.xhtml',·1,·'']]],
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178 ····['sycl_5fkernel_5futils_2eh_148',·['sycl_kernel_utils.h',·['../sycl__kernel__utils_8h.xhtml',·1,·'']]],178 ····['sycl_5fkernel_5futils_2eh_148',·['sycl_kernel_utils.h',·['../sycl__kernel__utils_8h.xhtml',·1,·'']]],
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180 ····['symrec_2ecpp_150',·['symrec.cpp',·['../symrec_8cpp.xhtml',·1,·'']]],180 ····['symrec_2ecpp_150',·['symrec.cpp',·['../symrec_8cpp.xhtml',·1,·'']]],
181 ····['symrec_2eh_151',·['symrec.h',·['../symrec_8h.xhtml',·1,·'']]],181 ····['symrec_2eh_151',·['symrec.h',·['../symrec_8h.xhtml',·1,·'']]],
182 ····['symtab_2ecpp_152',·['symtab.cpp',·['../tests_2symtab_8cpp.xhtml',·1,·'(Global·Namespace)'],182 ····['symtab_2ecpp_152',·['symtab.cpp',·['../symtab_8cpp.xhtml',·1,·'(Global·Namespace)'],
183 ········['../symtab_8cpp.xhtml',·1,·'(Global·Namespace)']183 ········['../tests_2symtab_8cpp.xhtml',·1,·'(Global·Namespace)']
184 ····]],184 ····]],
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186 ····['sysinfo_2ecpp_154',·['sysinfo.cpp',·['../sysinfo_8cpp.xhtml',·1,·'']]],186 ····['sysinfo_2ecpp_154',·['sysinfo.cpp',·['../sysinfo_8cpp.xhtml',·1,·'']]],
187 ····['sysinfo_2eh_155',·['sysinfo.h',·['../sysinfo_8h.xhtml',·1,·'']]]187 ····['sysinfo_2eh_155',·['sysinfo.h',·['../sysinfo_8h.xhtml',·1,·'']]]
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34 ····['testoptions_2eh_32',·['testoptions.h',·['../testoptions_8h.xhtml',·1,·'']]],34 ····['testoptions_2eh_32',·['testoptions.h',·['../testoptions_8h.xhtml',·1,·'']]],
35 ····['testsystem_2ecpp_33',·['testsystem.cpp',·['../testsystem_8cpp.xhtml',·1,·'']]],35 ····['testsystem_2ecpp_33',·['testsystem.cpp',·['../testsystem_8cpp.xhtml',·1,·'']]],
36 ····['testsystem_2eh_34',·['testsystem.h',·['../testsystem_8h.xhtml',·1,·'']]],36 ····['testsystem_2eh_34',·['testsystem.h',·['../testsystem_8h.xhtml',·1,·'']]],
37 ····['testutils_5fdoc_2eh_35',·['testutils_doc.h',·['../testutils__doc_8h.xhtml',·1,·'']]],37 ····['testutils_5fdoc_2eh_35',·['testutils_doc.h',·['../testutils__doc_8h.xhtml',·1,·'']]],
38 ····['textblockmatchers_2ecpp_36',·['textblockmatchers.cpp',·['../textblockmatchers_8cpp.xhtml',·1,·'']]],38 ····['textblockmatchers_2ecpp_36',·['textblockmatchers.cpp',·['../textblockmatchers_8cpp.xhtml',·1,·'']]],
39 ····['textblockmatchers_2eh_37',·['textblockmatchers.h',·['../textblockmatchers_8h.xhtml',·1,·'']]],39 ····['textblockmatchers_2eh_37',·['textblockmatchers.h',·['../textblockmatchers_8h.xhtml',·1,·'']]],
40 ····['textreader_2ecpp_38',·['textreader.cpp',·['../tests_2textreader_8cpp.xhtml',·1,·'(Global·Namespace)'],40 ····['textreader_2ecpp_38',·['textreader.cpp',·['../textreader_8cpp.xhtml',·1,·'(Global·Namespace)'],
41 ········['../textreader_8cpp.xhtml',·1,·'(Global·Namespace)']41 ········['../tests_2textreader_8cpp.xhtml',·1,·'(Global·Namespace)']
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45 ····['textwriter_2ecpp_41',·['textwriter.cpp',·['../textwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],45 ····['textwriter_2ecpp_41',·['textwriter.cpp',·['../textwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
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24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
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28 ········['../utility_8h.xhtml',·1,·'(Global·Namespace)']28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)']
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11 ····['checkpointdata_2eh_7',·['checkpointdata.h',·['../checkpointdata_8h.xhtml',·1,·'']]],11 ····['checkpointdata_2eh_7',·['checkpointdata.h',·['../checkpointdata_8h.xhtml',·1,·'']]],
12 ····['checkpointhandler_2ecpp_8',·['checkpointhandler.cpp',·['../checkpointhandler_8cpp.xhtml',·1,·'']]],12 ····['checkpointhandler_2ecpp_8',·['checkpointhandler.cpp',·['../checkpointhandler_8cpp.xhtml',·1,·'']]],
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14 ····['checkpointhelper_2ecpp_10',·['checkpointhelper.cpp',·['../checkpointhelper_8cpp.xhtml',·1,·'']]],14 ····['checkpointhelper_2ecpp_10',·['checkpointhelper.cpp',·['../checkpointhelper_8cpp.xhtml',·1,·'']]],
15 ····['checkpointhelper_2eh_11',·['checkpointhelper.h',·['../checkpointhelper_8h.xhtml',·1,·'']]],15 ····['checkpointhelper_2eh_11',·['checkpointhelper.h',·['../checkpointhelper_8h.xhtml',·1,·'']]],
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17 ····['clfftinitializer_2ecpp_13',·['clfftinitializer.cpp',·['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],17 ····['clfftinitializer_2ecpp_13',·['clfftinitializer.cpp',·['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
18 ········['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']18 ········['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']
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21 ····['clusterdistancekerneltype_2eh_15',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],21 ····['clusterdistancekerneltype_2eh_15',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]],
22 ····['clustsize_2ecpp_16',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],22 ····['clustsize_2ecpp_16',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]],
23 ····['cmdlinehelpcontext_2ecpp_17',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],23 ····['cmdlinehelpcontext_2ecpp_17',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],
24 ····['cmdlinehelpcontext_2eh_18',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],24 ····['cmdlinehelpcontext_2eh_18',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],
25 ····['cmdlinehelpmodule_2ecpp_19',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],25 ····['cmdlinehelpmodule_2ecpp_19',·['cmdlinehelpmodule.cpp',·['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],
26 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']26 ········['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']
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29 ····['cmdlinehelpwriter_2ecpp_21',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],29 ····['cmdlinehelpwriter_2ecpp_21',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
30 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']30 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
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33 ····['cmdlineinit_2ecpp_23',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],33 ····['cmdlineinit_2ecpp_23',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
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76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['colvarspreprocessor_2ecpp_54',·['colvarspreprocessor.cpp',·['../tests_2colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../colvarspreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
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80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],80 ····['colvarssimulationsparameters_2ecpp_56',·['colvarssimulationsparameters.cpp',·['../colvarssimulationsparameters_8cpp.xhtml',·1,·'']]],
81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],81 ····['colvarssimulationsparameters_2eh_57',·['colvarssimulationsparameters.h',·['../colvarssimulationsparameters_8h.xhtml',·1,·'']]],
82 ····['com_2ecpp_58',·['com.cpp',·['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)'],82 ····['com_2ecpp_58',·['com.cpp',·['../com_8cpp.xhtml',·1,·'(Global·Namespace)'],
83 ········['../com_8cpp.xhtml',·1,·'(Global·Namespace)']83 ········['../tests_2com_8cpp.xhtml',·1,·'(Global·Namespace)']
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86 ····['compare_2eh_60',·['compare.h',·['../compare_8h.xhtml',·1,·'']]],86 ····['compare_2eh_60',·['compare.h',·['../compare_8h.xhtml',·1,·'']]],
87 ····['comparison_5fhelpers_2eh_61',·['comparison_helpers.h',·['../comparison__helpers_8h.xhtml',·1,·'']]],87 ····['comparison_5fhelpers_2eh_61',·['comparison_helpers.h',·['../comparison__helpers_8h.xhtml',·1,·'']]],
88 ····['compiler_2ecpp_62',·['compiler.cpp',·['../compiler_8cpp.xhtml',·1,·'']]],88 ····['compiler_2ecpp_62',·['compiler.cpp',·['../compiler_8cpp.xhtml',·1,·'']]],
89 ····['compiler_2eh_63',·['compiler.h',·['../compiler_8h.xhtml',·1,·'']]],89 ····['compiler_2eh_63',·['compiler.h',·['../compiler_8h.xhtml',·1,·'']]],
90 ····['complex_2ecpp_64',·['complex.cpp',·['../complex_8cpp.xhtml',·1,·'']]],90 ····['complex_2ecpp_64',·['complex.cpp',·['../complex_8cpp.xhtml',·1,·'']]],
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110 ····['constrtestrunners_2ecpp_82',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],110 ····['constrtestrunners_2ecpp_82',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],
111 ····['constrtestrunners_2eh_83',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],111 ····['constrtestrunners_2eh_83',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],
112 ····['constrtestrunners_5fgpu_2ecpp_84',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],112 ····['constrtestrunners_5fgpu_2ecpp_84',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],
113 ····['convert_2dtpr_2dfixture_2eh_85',·['convert-tpr-fixture.h',·['../convert-tpr-fixture_8h.xhtml',·1,·'']]],113 ····['convert_2dtpr_2dfixture_2eh_85',·['convert-tpr-fixture.h',·['../convert-tpr-fixture_8h.xhtml',·1,·'']]],
114 ····['convert_2dtpr_2dwith_2dleaks_2ecpp_86',·['convert-tpr-with-leaks.cpp',·['../convert-tpr-with-leaks_8cpp.xhtml',·1,·'']]],114 ····['convert_2dtpr_2dwith_2dleaks_2ecpp_86',·['convert-tpr-with-leaks.cpp',·['../convert-tpr-with-leaks_8cpp.xhtml',·1,·'']]],
115 ····['convert_2dtpr_2ecpp_87',·['convert-tpr.cpp',·['../convert-tpr_8cpp.xhtml',·1,·'']]],115 ····['convert_2dtpr_2ecpp_87',·['convert-tpr.cpp',·['../convert-tpr_8cpp.xhtml',·1,·'']]],
116 ····['convert_5ftrj_2ecpp_88',·['convert_trj.cpp',·['../tests_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)'],116 ····['convert_5ftrj_2ecpp_88',·['convert_trj.cpp',·['../modules_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)'],
117 ········['../modules_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)']117 ········['../tests_2convert__trj_8cpp.xhtml',·1,·'(Global·Namespace)']
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120 ····['convparm_2ecpp_90',·['convparm.cpp',·['../tests_2convparm_8cpp.xhtml',·1,·'']]],120 ····['convparm_2ecpp_90',·['convparm.cpp',·['../tests_2convparm_8cpp.xhtml',·1,·'']]],
121 ····['coolstuff_2ecpp_91',·['coolstuff.cpp',·['../coolstuff_8cpp.xhtml',·1,·'']]],121 ····['coolstuff_2ecpp_91',·['coolstuff.cpp',·['../coolstuff_8cpp.xhtml',·1,·'']]],
122 ····['coolstuff_2eh_92',·['coolstuff.h',·['../coolstuff_8h.xhtml',·1,·'']]],122 ····['coolstuff_2eh_92',·['coolstuff.h',·['../coolstuff_8h.xhtml',·1,·'']]],
123 ····['coordinate_5ftest_2eh_93',·['coordinate_test.h',·['../coordinate__test_8h.xhtml',·1,·'']]],123 ····['coordinate_5ftest_2eh_93',·['coordinate_test.h',·['../coordinate__test_8h.xhtml',·1,·'']]],
124 ····['coordinatefile_2ecpp_94',·['coordinatefile.cpp',·['../coordinatefile_8cpp.xhtml',·1,·'']]],124 ····['coordinatefile_2ecpp_94',·['coordinatefile.cpp',·['../coordinatefile_8cpp.xhtml',·1,·'']]],
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28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
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31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
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33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],
47 ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],47 ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]],
48 ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],48 ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]],
49 ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],49 ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]],
50 ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]],50 ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]],
51 ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]],51 ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]],
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54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],54 ····['device_5fcontext_5focl_2ecpp_40',·['device_context_ocl.cpp',·['../device__context__ocl_8cpp.xhtml',·1,·'']]],
55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],55 ····['device_5fcontext_5fsycl_2ecpp_41',·['device_context_sycl.cpp',·['../device__context__sycl_8cpp.xhtml',·1,·'']]],
56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],56 ····['device_5fevent_2eh_42',·['device_event.h',·['../device__event_8h.xhtml',·1,·'']]],
57 ····['device_5fevent_5fhip_2eh_43',·['device_event_hip.h',·['../device__event__hip_8h.xhtml',·1,·'']]],57 ····['device_5fevent_5fhip_2eh_43',·['device_event_hip.h',·['../device__event__hip_8h.xhtml',·1,·'']]],
58 ····['device_5fevent_5focl_2eh_44',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],58 ····['device_5fevent_5focl_2eh_44',·['device_event_ocl.h',·['../device__event__ocl_8h.xhtml',·1,·'']]],
59 ····['device_5fevent_5fsycl_2eh_45',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],59 ····['device_5fevent_5fsycl_2eh_45',·['device_event_sycl.h',·['../device__event__sycl_8h.xhtml',·1,·'']]],
60 ····['device_5finformation_2eh_46',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],60 ····['device_5finformation_2eh_46',·['device_information.h',·['../device__information_8h.xhtml',·1,·'']]],
61 ····['device_5fmanagement_2ecpp_47',·['device_management.cpp',·['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],61 ····['device_5fmanagement_2ecpp_47',·['device_management.cpp',·['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)'],
62 ········['../device__management_8cpp.xhtml',·1,·'(Global·Namespace)']62 ········['../tests_2device__management_8cpp.xhtml',·1,·'(Global·Namespace)']
63 ····]],63 ····]],
64 ····['device_5fmanagement_2eh_48',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],64 ····['device_5fmanagement_2eh_48',·['device_management.h',·['../device__management_8h.xhtml',·1,·'']]],
65 ····['device_5fmanagement_5fcommon_2ecpp_49',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],65 ····['device_5fmanagement_5fcommon_2ecpp_49',·['device_management_common.cpp',·['../device__management__common_8cpp.xhtml',·1,·'']]],
66 ····['device_5fmanagement_5fhip_2ecpp_50',·['device_management_hip.cpp',·['../device__management__hip_8cpp.xhtml',·1,·'']]],66 ····['device_5fmanagement_5fhip_2ecpp_50',·['device_management_hip.cpp',·['../device__management__hip_8cpp.xhtml',·1,·'']]],
67 ····['device_5fmanagement_5focl_2ecpp_51',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],67 ····['device_5fmanagement_5focl_2ecpp_51',·['device_management_ocl.cpp',·['../device__management__ocl_8cpp.xhtml',·1,·'']]],
68 ····['device_5fmanagement_5fshared_5famd_2ecpp_52',·['device_management_shared_amd.cpp',·['../device__management__shared__amd_8cpp.xhtml',·1,·'']]],68 ····['device_5fmanagement_5fshared_5famd_2ecpp_52',·['device_management_shared_amd.cpp',·['../device__management__shared__amd_8cpp.xhtml',·1,·'']]],
69 ····['device_5fmanagement_5fshared_5famd_2eh_53',·['device_management_shared_amd.h',·['../device__management__shared__amd_8h.xhtml',·1,·'']]],69 ····['device_5fmanagement_5fshared_5famd_2eh_53',·['device_management_shared_amd.h',·['../device__management__shared__amd_8h.xhtml',·1,·'']]],
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14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],
15 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']
16 ····]],16 ····]],
17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],
18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],
19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],
20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']
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24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],
25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],
26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']
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27 ····['findallgputasks_2ecpp_21',·['findallgputasks.cpp',·['../findallgputasks_8cpp.xhtml',·1,·'']]],27 ····['findallgputasks_2ecpp_21',·['findallgputasks.cpp',·['../findallgputasks_8cpp.xhtml',·1,·'']]],
28 ····['findallgputasks_2eh_22',·['findallgputasks.h',·['../findallgputasks_8h.xhtml',·1,·'']]],28 ····['findallgputasks_2eh_22',·['findallgputasks.h',·['../findallgputasks_8h.xhtml',·1,·'']]],
29 ····['firstorderpressurecoupling_2ecpp_23',·['firstorderpressurecoupling.cpp',·['../firstorderpressurecoupling_8cpp.xhtml',·1,·'']]],29 ····['firstorderpressurecoupling_2ecpp_23',·['firstorderpressurecoupling.cpp',·['../firstorderpressurecoupling_8cpp.xhtml',·1,·'']]],
30 ····['firstorderpressurecoupling_2eh_24',·['firstorderpressurecoupling.h',·['../firstorderpressurecoupling_8h.xhtml',·1,·'']]],30 ····['firstorderpressurecoupling_2eh_24',·['firstorderpressurecoupling.h',·['../firstorderpressurecoupling_8h.xhtml',·1,·'']]],
31 ····['fixedcapacityvector_2ecpp_25',·['fixedcapacityvector.cpp',·['../fixedcapacityvector_8cpp.xhtml',·1,·'']]],31 ····['fixedcapacityvector_2ecpp_25',·['fixedcapacityvector.cpp',·['../fixedcapacityvector_8cpp.xhtml',·1,·'']]],
32 ····['fixedcapacityvector_2eh_26',·['fixedcapacityvector.h',·['../fixedcapacityvector_8h.xhtml',·1,·'']]],32 ····['fixedcapacityvector_2eh_26',·['fixedcapacityvector.h',·['../fixedcapacityvector_8h.xhtml',·1,·'']]],
33 ····['flags_2eh_27',·['flags.h',·['../flags_8h.xhtml',·1,·'']]],33 ····['flags_2eh_27',·['flags.h',·['../flags_8h.xhtml',·1,·'']]],
34 ····['forcebuffers_2ecpp_28',·['forcebuffers.cpp',·['../forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['forcebuffers_2ecpp_28',·['forcebuffers.cpp',·['../tests_2forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../tests_2forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../forcebuffers_8cpp.xhtml',·1,·'(Global·Namespace)']
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38 ····['forceelement_2ecpp_30',·['forceelement.cpp',·['../forceelement_8cpp.xhtml',·1,·'']]],38 ····['forceelement_2ecpp_30',·['forceelement.cpp',·['../forceelement_8cpp.xhtml',·1,·'']]],
39 ····['forceelement_2eh_31',·['forceelement.h',·['../forceelement_8h.xhtml',·1,·'']]],39 ····['forceelement_2eh_31',·['forceelement.h',·['../forceelement_8h.xhtml',·1,·'']]],
40 ····['forceoutput_2eh_32',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],40 ····['forceoutput_2eh_32',·['forceoutput.h',·['../forceoutput_8h.xhtml',·1,·'']]],
41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],41 ····['forcetable_2eh_33',·['forcetable.h',·['../forcetable_8h.xhtml',·1,·'']]],
42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],42 ····['frameaverager_2ecpp_34',·['frameaverager.cpp',·['../frameaverager_8cpp.xhtml',·1,·'']]],
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24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
25 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']25 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
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28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
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34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
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38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],38 ····['hip_5fsycl_5fkernel_5futils_2eh_24',·['hip_sycl_kernel_utils.h',·['../hip__sycl__kernel__utils_8h.xhtml',·1,·'']]],
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9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],9 ····['manager_2eh_7',·['manager.h',·['../manager_8h.xhtml',·1,·'']]],
10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],10 ····['manyautocorrelation_2ecpp_8',·['manyautocorrelation.cpp',·['../manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)'],
11 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']11 ········['../tests_2manyautocorrelation_8cpp.xhtml',·1,·'(Global·Namespace)']
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14 ····['matio_2ecpp_10',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],14 ····['matio_2ecpp_10',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],
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20 ····['md_5fenums_2eh_14',·['md_enums.h',·['../md__enums_8h.xhtml',·1,·'']]],20 ····['md_5fenums_2eh_14',·['md_enums.h',·['../md__enums_8h.xhtml',·1,·'']]],
21 ····['mdgpugraph_2ecpp_15',·['mdgpugraph.cpp',·['../mdgpugraph_8cpp.xhtml',·1,·'']]],21 ····['mdgpugraph_2ecpp_15',·['mdgpugraph.cpp',·['../mdgpugraph_8cpp.xhtml',·1,·'']]],
22 ····['mdgraph_5fgpu_2eh_16',·['mdgraph_gpu.h',·['../mdgraph__gpu_8h.xhtml',·1,·'']]],22 ····['mdgraph_5fgpu_2eh_16',·['mdgraph_gpu.h',·['../mdgraph__gpu_8h.xhtml',·1,·'']]],
23 ····['mdgraph_5fgpu_5fimpl_2ecpp_17',·['mdgraph_gpu_impl.cpp',·['../mdgraph__gpu__impl_8cpp.xhtml',·1,·'']]],23 ····['mdgraph_5fgpu_5fimpl_2ecpp_17',·['mdgraph_gpu_impl.cpp',·['../mdgraph__gpu__impl_8cpp.xhtml',·1,·'']]],
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54 ····['mockhardwaretopology_2ecpp_42',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],54 ····['mockhardwaretopology_2ecpp_42',·['mockhardwaretopology.cpp',·['../mockhardwaretopology_8cpp.xhtml',·1,·'']]],
55 ····['modularsimulator_2ecpp_43',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],55 ····['modularsimulator_2ecpp_43',·['modularsimulator.cpp',·['../modularsimulator_8cpp.xhtml',·1,·'']]],
56 ····['modularsimulator_2eh_44',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],56 ····['modularsimulator_2eh_44',·['modularsimulator.h',·['../modularsimulator_8h.xhtml',·1,·'']]],
57 ····['modularsimulatorinterfaces_2eh_45',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],57 ····['modularsimulatorinterfaces_2eh_45',·['modularsimulatorinterfaces.h',·['../modularsimulatorinterfaces_8h.xhtml',·1,·'']]],
58 ····['modules_2ecpp_46',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],58 ····['modules_2ecpp_46',·['modules.cpp',·['../modules_8cpp.xhtml',·1,·'']]],
59 ····['modules_2eh_47',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],59 ····['modules_2eh_47',·['modules.h',·['../modules_8h.xhtml',·1,·'']]],
60 ····['moduletest_2ecpp_48',·['moduletest.cpp',·['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],60 ····['moduletest_2ecpp_48',·['moduletest.cpp',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)'],
61 ········['../gromacs_2trajectoryanalysis_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']61 ········['../programs_2mdrun_2tests_2moduletest_8cpp.xhtml',·1,·'(Global·Namespace)']
62 ····]],62 ····]],
63 ····['moduletest_2eh_49',·['moduletest.h',·['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],63 ····['moduletest_2eh_49',·['moduletest.h',·['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)'],
64 ········['../programs_2mdrun_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']64 ········['../gromacs_2trajectoryanalysis_2tests_2moduletest_8h.xhtml',·1,·'(Global·Namespace)']
65 ····]],65 ····]],
66 ····['mp11_2eh_50',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],66 ····['mp11_2eh_50',·['mp11.h',·['../mp11_8h.xhtml',·1,·'']]],
67 ····['mpi_5fprinter_2eh_51',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],67 ····['mpi_5fprinter_2eh_51',·['mpi_printer.h',·['../mpi__printer_8h.xhtml',·1,·'']]],
68 ····['mpitest_2ecpp_52',·['mpitest.cpp',·['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],68 ····['mpitest_2ecpp_52',·['mpitest.cpp',·['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)'],
69 ········['../mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']69 ········['../tests_2mpitest_8cpp.xhtml',·1,·'(Global·Namespace)']
70 ····]],70 ····]],
71 ····['mpitest_2eh_53',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],71 ····['mpitest_2eh_53',·['mpitest.h',·['../mpitest_8h.xhtml',·1,·'']]],
72 ····['mrcdensitymap_2ecpp_54',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],72 ····['mrcdensitymap_2ecpp_54',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
73 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']73 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
74 ····]],74 ····]],
75 ····['mrcdensitymap_2eh_55',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],75 ····['mrcdensitymap_2eh_55',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
76 ····['mrcdensitymapheader_2ecpp_56',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['mrcdensitymapheader_2ecpp_56',·['mrcdensitymapheader.cpp',·['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['mrcdensitymapheader_2eh_57',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],79 ····['mrcdensitymapheader_2eh_57',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],
80 ····['mrcserializer_2ecpp_58',·['mrcserializer.cpp',·['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],80 ····['mrcserializer_2ecpp_58',·['mrcserializer.cpp',·['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
81 ········['../tests_2mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']81 ········['../mrcserializer_8cpp.xhtml',·1,·'(Global·Namespace)']
82 ····]],82 ····]],
83 ····['mrcserializer_2eh_59',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],83 ····['mrcserializer_2eh_59',·['mrcserializer.h',·['../mrcserializer_8h.xhtml',·1,·'']]],
84 ····['msd_2ecpp_60',·['msd.cpp',·['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],84 ····['msd_2ecpp_60',·['msd.cpp',·['../tests_2msd_8cpp.xhtml',·1,·'(Global·Namespace)'],
85 ········['../tests_2msd_8cpp.xhtml',·1,·'(Global·Namespace)']85 ········['../modules_2msd_8cpp.xhtml',·1,·'(Global·Namespace)']
86 ····]],86 ····]],
87 ····['msd_2eh_61',·['msd.h',·['../msd_8h.xhtml',·1,·'']]],87 ····['msd_2eh_61',·['msd.h',·['../msd_8h.xhtml',·1,·'']]],
88 ····['mshift_2ecpp_62',·['mshift.cpp',·['../tests_2mshift_8cpp.xhtml',·1,·'']]],88 ····['mshift_2ecpp_62',·['mshift.cpp',·['../tests_2mshift_8cpp.xhtml',·1,·'']]],
89 ····['mtop_2ecpp_63',·['mtop.cpp',·['../mtop_8cpp.xhtml',·1,·'']]],89 ····['mtop_2ecpp_63',·['mtop.cpp',·['../mtop_8cpp.xhtml',·1,·'']]],
90 ····['mtop_5fatomloops_2eh_64',·['mtop_atomloops.h',·['../mtop__atomloops_8h.xhtml',·1,·'']]],90 ····['mtop_5fatomloops_2eh_64',·['mtop_atomloops.h',·['../mtop__atomloops_8h.xhtml',·1,·'']]],
91 ····['mtop_5flookup_2eh_65',·['mtop_lookup.h',·['../mtop__lookup_8h.xhtml',·1,·'']]],91 ····['mtop_5flookup_2eh_65',·['mtop_lookup.h',·['../mtop__lookup_8h.xhtml',·1,·'']]],
92 ····['mttk_2ecpp_66',·['mttk.cpp',·['../mttk_8cpp.xhtml',·1,·'']]],92 ····['mttk_2ecpp_66',·['mttk.cpp',·['../mttk_8cpp.xhtml',·1,·'']]],
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Offset 63, 16 lines modifiedOffset 63, 16 lines modified
63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],63 ····['neldermead_2eh_57',·['neldermead.h',·['../neldermead_8h.xhtml',·1,·'']]],
64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],
76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
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Offset 42, 16 lines modifiedOffset 42, 16 lines modified
42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['pbc_2ecpp_34',·['pbc.cpp',·['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],45 ····['pbc_5faiuc_2eh_35',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]],
46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],46 ····['pbc_5faiuc_5fsycl_2eh_36',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]],
47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],47 ····['pbc_5fsimd_2ecpp_37',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]],
48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],48 ····['pbc_5fsimd_2eh_38',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]],
49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],49 ····['pbcenums_2ecpp_39',·['pbcenums.cpp',·['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'],
50 ········['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']50 ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)']
51 ····]],51 ····]],
52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],52 ····['pbcenums_2eh_40',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]],
53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],53 ····['pdb2gmx_2ecpp_41',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]],
54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],54 ····['periodicactions_2ecpp_42',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]],
55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],55 ····['periodicactions_2eh_43',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]],
56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],56 ····['periodicactions_5fbasic_2ecpp_44',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]],
57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],57 ····['periodicactions_5fconstraints_2ecpp_45',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]],
Offset 74, 16 lines modifiedOffset 74, 16 lines modified
74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],74 ····['plumedoptions_2eh_60',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],
75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],75 ····['plumedtestutils_2ecpp_61',·['plumedTestUtils.cpp',·['../plumedTestUtils_8cpp.xhtml',·1,·'']]],
76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],76 ····['plumedtestutils_2eh_62',·['plumedTestUtils.h',·['../plumedTestUtils_8h.xhtml',·1,·'']]],
77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],77 ····['pmalloc_2ecpp_63',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],78 ····['pmalloc_2eh_64',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],79 ····['pmalloc_5fhip_2ecpp_65',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],
80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],80 ····['pmalloc_5fsycl_2ecpp_66',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
81 ····['pme_2ecpp_67',·['pme.cpp',·['../pme_8cpp.xhtml',·1,·'(Global·Namespace)'],81 ····['pme_2ecpp_67',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
82 ········['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)']82 ········['../pme_8cpp.xhtml',·1,·'(Global·Namespace)']
83 ····]],83 ····]],
84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],84 ····['pme_2eh_68',·['pme.h',·['../pme_8h.xhtml',·1,·'']]],
85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],85 ····['pme_5fcoordinate_5freceiver_5fgpu_2eh_69',·['pme_coordinate_receiver_gpu.h',·['../pme__coordinate__receiver__gpu_8h.xhtml',·1,·'']]],
86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],86 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2ecpp_70',·['pme_coordinate_receiver_gpu_impl.cpp',·['../pme__coordinate__receiver__gpu__impl_8cpp.xhtml',·1,·'']]],
87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],87 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_2eh_71',·['pme_coordinate_receiver_gpu_impl.h',·['../pme__coordinate__receiver__gpu__impl_8h.xhtml',·1,·'']]],
88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],88 ····['pme_5fcoordinate_5freceiver_5fgpu_5fimpl_5fgpu_2ecpp_72',·['pme_coordinate_receiver_gpu_impl_gpu.cpp',·['../pme__coordinate__receiver__gpu__impl__gpu_8cpp.xhtml',·1,·'']]],
89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],89 ····['pme_5fforce_5fsender_5fgpu_2eh_73',·['pme_force_sender_gpu.h',·['../pme__force__sender__gpu_8h.xhtml',·1,·'']]],
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Offset 4, 20 lines modifiedOffset 4, 20 lines modified
4 ····]],4 ····]],
5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],5 ····['qmmm_2eh_1',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],6 ····['qmmmforceprovider_2ecpp_2',·['qmmmforceprovider.cpp',·['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
7 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']7 ········['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
8 ····]],8 ····]],
9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],9 ····['qmmmforceprovider_2eh_3',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],10 ····['qmmmforceprovider_5fstub_2ecpp_4',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],11 ····['qmmminputgenerator_2ecpp_5',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
12 ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']12 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
13 ····]],13 ····]],
14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],14 ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']16 ········['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
17 ····]],17 ····]],
18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],18 ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]],
19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
20 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
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156 <dd><a·class="anchor"·id="_todo000194"></a>·One·of·the·major·bottlenecks·for·selection·performance·is·that·all·the·evaluation·is·carried·out·for·atoms.·There·are·several·cases·when·the·evaluation·could·be·done·for·residues·or·molecules·instead,·including·keywords·that·select·by·residue·and·cases·where·residue·centers·are·used·as·reference·positions.·Implementing·this·would·require·a·mechanism·for·recognizing·whether·something·can·be·evaluated·by·residue/molecule·instead·by·atom,·and·converting·selections·by·residue/molecule·into·selections·by·atom·when·necessary.·</dd>156 <dd><a·class="anchor"·id="_todo000194"></a>·One·of·the·major·bottlenecks·for·selection·performance·is·that·all·the·evaluation·is·carried·out·for·atoms.·There·are·several·cases·when·the·evaluation·could·be·done·for·residues·or·molecules·instead,·including·keywords·that·select·by·residue·and·cases·where·residue·centers·are·used·as·reference·positions.·Implementing·this·would·require·a·mechanism·for·recognizing·whether·something·can·be·evaluated·by·residue/molecule·instead·by·atom,·and·converting·selections·by·residue/molecule·into·selections·by·atom·when·necessary.·</dd>
157 <dt>File·<a·class="el"·href="exactcontinuation_8cpp.xhtml">exactcontinuation.cpp</a>··</dt>157 <dt>File·<a·class="el"·href="exactcontinuation_8cpp.xhtml">exactcontinuation.cpp</a>··</dt>
158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>
159 <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt>159 <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt>
160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>
161 <dt>File·<a·class="el"·href="expandedensemble_8cpp.xhtml">expandedensemble.cpp</a>··</dt>161 <dt>File·<a·class="el"·href="expandedensemble_8cpp.xhtml">expandedensemble.cpp</a>··</dt>
162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>
163 <dt>Member·<a·class="el"·href="device__management_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt>163 <dt>Member·<a·class="el"·href="device__management__sycl_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt>
164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>
165 <dt>Member·<a·class="el"·href="expfit_8h.xhtml#a560ea7d97277b9e0576776ec695fb9b3">fit_acf</a>··(int·ncorr,·int·fitfn,·const·gmx_output_env_t·*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit)</dt>165 <dt>Member·<a·class="el"·href="expfit_8h.xhtml#a560ea7d97277b9e0576776ec695fb9b3">fit_acf</a>··(int·ncorr,·int·fitfn,·const·gmx_output_env_t·*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit)</dt>
166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>
167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>
168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>
170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
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477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>
478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>
479 </dd>479 </dd>
480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>
481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>
482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>
483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>
484 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>484 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>
485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>
486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>
487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>
488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>
489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>
490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>
491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>
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565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>
566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>
567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>
569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>
570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>
571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
572 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>572 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>
573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>
574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>
575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>
576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>
577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>
578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>
579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>
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595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],
596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],
598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
 602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'],
602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],603 ········['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()']
603 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'] 
604 ····]],604 ····]],
 605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'],
605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],606 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']
606 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] 
607 ····]],607 ····]],
 608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'],
608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],609 ········['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()']
609 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'] 
610 ····]],610 ····]],
611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
613 ····]],613 ····]],
614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],
615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],
616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],
Offset 618, 16 lines modifiedOffset 618, 16 lines modified
618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],
620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],
621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],
622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],
623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],
624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],
 625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'],
625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()'],626 ········['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()']
626 ········['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'] 
627 ····]],627 ····]],
628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],
629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']
630 ····]],630 ····]],
631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],
632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']
633 ····]],633 ····]],
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27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
29 ····['unitvector_21',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],29 ····['unitvector_21',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
30 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']30 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']
31 ····]],31 ····]],
32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],
34 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'], 
35 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h']34 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],
 35 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown']
36 ····]],36 ····]],
37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
42 ····['update_29',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],42 ····['update_29',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
 43 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'],
43 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],44 ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()']
44 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'] 
45 ····]],45 ····]],
46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],
47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],
48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],
49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],
50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],
51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],
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66 ····]],66 ····]],
67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],
68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],
69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']
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71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],
72 ····['updatehistory_51',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'], 
73 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()']72 ····['updatehistory_51',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],
 73 ········['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()']
74 ····]],74 ····]],
75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],
76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],
77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],
78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],
79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],
80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],
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2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],
3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],
4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],
5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],
6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']
7 ····]],7 ····]],
8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],
9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()'],
10 ········['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(const·param_type·&amp;param)'],10 ········['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],
11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(result_type·a=0.0,·result_type·b=1.0)']11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()']
12 ····]],12 ····]],
13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],
14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],
15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
22 ····['unitvector_14',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'], 
23 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']22 ····['unitvector_14',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],
 23 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)']
24 ····]],24 ····]],
25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],
27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
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76344 ··<compound·refid="datastorage_8h"·kind="file">76344 ··<compound·refid="datastorage_8h"·kind="file">
76345 ····<name>datastorage.h</name>76345 ····<name>datastorage.h</name>
76346 ··</compound>76346 ··</compound>
76347 ··<compound·refid="framelocaldata_8h"·kind="file">76347 ··<compound·refid="framelocaldata_8h"·kind="file">
76348 ····<name>framelocaldata.h</name>76348 ····<name>framelocaldata.h</name>
76349 ··</compound>76349 ··</compound>
76350 ··<compound·refid="modules_2average_8cpp"·kind="file"> 
76351 ····<name>average.cpp</name> 
76352 ··</compound> 
76353 ··<compound·refid="tests_2average_8cpp"·kind="file"> 
76354 ····<name>average.cpp</name> 
76355 ··</compound> 
76356 ··<compound·refid="displacement_8cpp"·kind="file">76350 ··<compound·refid="displacement_8cpp"·kind="file">
76357 ····<name>displacement.cpp</name>76351 ····<name>displacement.cpp</name>
76358 ··</compound>76352 ··</compound>
76359 ··<compound·refid="frameaverager_8cpp"·kind="file">76353 ··<compound·refid="frameaverager_8cpp"·kind="file">
76360 ····<name>frameaverager.cpp</name>76354 ····<name>frameaverager.cpp</name>
76361 ··</compound>76355 ··</compound>
76362 ··<compound·refid="frameaverager_8h"·kind="file">76356 ··<compound·refid="frameaverager_8h"·kind="file">
76363 ····<name>frameaverager.h</name>76357 ····<name>frameaverager.h</name>
76364 ··</compound>76358 ··</compound>
76365 ··<compound·refid="modules_2histogram_8cpp"·kind="file"> 
76366 ····<name>histogram.cpp</name> 
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76368 ··<compound·refid="tests_2histogram_8cpp"·kind="file"> 
76369 ····<name>histogram.cpp</name> 
76370 ··</compound> 
76371 ··<compound·refid="modules_2lifetime_8cpp"·kind="file"> 
76372 ····<name>lifetime.cpp</name> 
76373 ··</compound> 
76374 ··<compound·refid="tests_2lifetime_8cpp"·kind="file"> 
76375 ····<name>lifetime.cpp</name> 
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76377 ··<compound·refid="plot_8cpp"·kind="file">76359 ··<compound·refid="plot_8cpp"·kind="file">
76378 ····<name>plot.cpp</name>76360 ····<name>plot.cpp</name>
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76380 ··<compound·refid="paralleloptions_8h"·kind="file">76362 ··<compound·refid="paralleloptions_8h"·kind="file">
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 76366 ····<name>average.cpp</name>
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 76368 ··<compound·refid="tests_2average_8cpp"·kind="file">
 76369 ····<name>average.cpp</name>
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76383 ··<compound·refid="datatest_8cpp"·kind="file">76371 ··<compound·refid="datatest_8cpp"·kind="file">
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76386 ··<compound·refid="datatest_8h"·kind="file">76374 ··<compound·refid="datatest_8h"·kind="file">
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 76386 ··<compound·refid="tests_2lifetime_8cpp"·kind="file">
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76389 ··<compound·refid="mock__datamodule_8cpp"·kind="file">76389 ··<compound·refid="mock__datamodule_8cpp"·kind="file">
76390 ····<name>mock_datamodule.cpp</name>76390 ····<name>mock_datamodule.cpp</name>
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76392 ··<compound·refid="mock__datamodule_8h"·kind="file">76392 ··<compound·refid="mock__datamodule_8h"·kind="file">
76393 ····<name>mock_datamodule.h</name>76393 ····<name>mock_datamodule.h</name>
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76395 ··<compound·refid="awh_8cpp"·kind="file">76395 ··<compound·refid="awh_8cpp"·kind="file">
Offset 76418, 29 lines modifiedOffset 76418, 17 lines modified
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76419 ··<compound·refid="biasparams_8cpp"·kind="file">76419 ··<compound·refid="biasparams_8cpp"·kind="file">
76420 ····<name>biasparams.cpp</name>76420 ····<name>biasparams.cpp</name>
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76422 ··<compound·refid="biasparams_8h"·kind="file">76422 ··<compound·refid="biasparams_8h"·kind="file">
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76425 ··<compound·refid="biassharing_8cpp"·kind="file"> 
76426 ····<name>biassharing.cpp</name> 
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76428 ··<compound·refid="tests_2biassharing_8cpp"·kind="file"> 
76429 ····<name>biassharing.cpp</name> 
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76431 ··<compound·refid="biassharing_8h"·kind="file">76425 ··<compound·refid="biassharing_8h"·kind="file">
76432 ····<name>biassharing.h</name>76426 ····<name>biassharing.h</name>
76433 ··</compound>76427 ··</compound>
76434 ··<compound·refid="biasstate_8cpp"·kind="file"> 
76435 ····<name>biasstate.cpp</name> 
76436 ··</compound> 
76437 ··<compound·refid="tests_2biasstate_8cpp"·kind="file"> 
76438 ····<name>biasstate.cpp</name> 
76439 ··</compound> 
76440 ··<compound·refid="biasstate_8h"·kind="file">76428 ··<compound·refid="biasstate_8h"·kind="file">
76441 ····<name>biasstate.h</name>76429 ····<name>biasstate.h</name>
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76443 ··<compound·refid="biaswriter_8cpp"·kind="file">76431 ··<compound·refid="biaswriter_8cpp"·kind="file">
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76446 ··<compound·refid="biaswriter_8h"·kind="file">76434 ··<compound·refid="biaswriter_8h"·kind="file">
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76497 ··<compound·refid="awh__setup_8h"·kind="file">76485 ··<compound·refid="awh__setup_8h"·kind="file">
76498 ····<name>awh_setup.h</name>76486 ····<name>awh_setup.h</name>
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76500 ··<compound·refid="bias__fep__lambda__state_8cpp"·kind="file">76488 ··<compound·refid="bias__fep__lambda__state_8cpp"·kind="file">
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76502 ··</compound>76490 ··</compound>
 76491 ··<compound·refid="biassharing_8cpp"·kind="file">
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2665 ············</para>2665 ············</para>
2666 ··········</listitem>2666 ··········</listitem>
2667 ··········<varlistentry>2667 ··········<varlistentry>
2668 ············<term>2668 ············<term>
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2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>
2673 ··············*cr,·const2673 ··············*cr,·const
2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>
2675 ··············&amp;numPmeDomains,·const2675 ··············&amp;numPmeDomains,·const
2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>
2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,
Offset 3202, 15 lines modifiedOffset 3202, 15 lines modified
3202 ··············<ndash/>3202 ··············<ndash/>
3203 ··············renaming·coefficients·to·charges·(?)3203 ··············renaming·coefficients·to·charges·(?)
3204 ············</para>3204 ············</para>
3205 ··········</listitem>3205 ··········</listitem>
3206 ··········<varlistentry>3206 ··········<varlistentry>
3207 ············<term>3207 ············<term>
3208 ··············Member3208 ··············Member
3209 ··············<ref·refid="pme_8h_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>3209 ··············<ref·refid="pme_8cpp_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>
3210 ··············(const·gmx_pme_t·*pme)3210 ··············(const·gmx_pme_t·*pme)
3211 ············</term>3211 ············</term>
3212 ··········</varlistentry>3212 ··········</varlistentry>
3213 ··········<listitem>3213 ··········<listitem>
3214 ············<para>3214 ············<para>
3215 ··············<anchor·id="todo_1_todo000025"/>3215 ··············<anchor·id="todo_1_todo000025"/>
3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.
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1.17 KB
./usr/share/doc/gromacs/html/manual-2025.2-Debian_2025.2_1.pdf
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1.05 KB
pdftotext {} -
    
Offset 17659, 15 lines modifiedOffset 17659, 15 lines modified
17659 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David17659 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David
17660 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten17660 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten
17661 Wolf,·Artem·Zhmurov17661 Wolf,·Artem·Zhmurov
17662 Project·leaders:·Berk·Hess,·Erik·Lindahl17662 Project·leaders:·Berk·Hess,·Erik·Lindahl
17663 ©·1991·–·2000:17663 ©·1991·–·2000:
17664 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17664 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17665 The·Netherlands.17665 The·Netherlands.
17666 ©·2001·–·2026:17666 ©·2001·–·2025:
17667 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17667 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17668 Sweden.17668 Sweden.
17669 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first17669 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first
17670 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17670 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17671 is·not·entirely·correct.17671 is·not·entirely·correct.
17672 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17672 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17673 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue17673 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·596)),·or·open·an·issue·on·our·issue
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2.14 KB
./usr/share/doc/gromacs/html/reference-manual/preface.html
    
Offset 4466, 15 lines modifiedOffset 4466, 15 lines modified
00011710:·7273·6974·7920·6f66·2047·726f·6e69·6e67··rsity·of·Groning00011710:·7273·6974·7920·6f66·2047·726f·6e69·6e67··rsity·of·Groning
00011720:·656e·2e0a·4e69·6a65·6e62·6f72·6768·2034··en..Nijenborgh·400011720:·656e·2e0a·4e69·6a65·6e62·6f72·6768·2034··en..Nijenborgh·4
00011730:·2c20·3937·3437·2041·4720·4772·6f6e·696e··,·9747·AG·Gronin00011730:·2c20·3937·3437·2041·4720·4772·6f6e·696e··,·9747·AG·Gronin
00011740:·6765·6e2c·2054·6865·204e·6574·6865·726c··gen,·The·Netherl00011740:·6765·6e2c·2054·6865·204e·6574·6865·726c··gen,·The·Netherl
00011750:·616e·6473·2e3c·2f70·3e0a·3c2f·6469·763e··ands.</p>.</div>00011750:·616e·6473·2e3c·2f70·3e0a·3c2f·6469·763e··ands.</p>.</div>
00011760:·3c2f·626c·6f63·6b71·756f·7465·3e0a·3c70··</blockquote>.<p00011760:·3c2f·626c·6f63·6b71·756f·7465·3e0a·3c70··</blockquote>.<p
00011770:·3ec2·a920·3230·3031·20e2·8093·2032·3032··>..·2001·...·20200011770:·3ec2·a920·3230·3031·20e2·8093·2032·3032··>..·2001·...·202
00011780:·363a·3c2f·703e·0a3c·626c·6f63·6b71·756f··6:</p>.<blockquo00011780:·353a·3c2f·703e·0a3c·626c·6f63·6b71·756f··5:</p>.<blockquo
00011790:·7465·3e0a·3c64·6976·3e3c·703e·5468·6520··te>.<div><p>The·00011790:·7465·3e0a·3c64·6976·3e3c·703e·5468·6520··te>.<div><p>The·
000117a0:·4752·4f4d·4143·5320·6465·7665·6c6f·706d··GROMACS·developm000117a0:·4752·4f4d·4143·5320·6465·7665·6c6f·706d··GROMACS·developm
000117b0:·656e·7420·7465·616d·7320·6174·2074·6865··ent·teams·at·the000117b0:·656e·7420·7465·616d·7320·6174·2074·6865··ent·teams·at·the
000117c0:·2052·6f79·616c·2049·6e73·7469·7475·7465···Royal·Institute000117c0:·2052·6f79·616c·2049·6e73·7469·7475·7465···Royal·Institute
000117d0:·206f·6620·5465·6368·6e6f·6c6f·6779·2061···of·Technology·a000117d0:·206f·6620·5465·6368·6e6f·6c6f·6779·2061···of·Technology·a
000117e0:·6e64·0a55·7070·7361·6c61·2055·6e69·7665··nd.Uppsala·Unive000117e0:·6e64·0a55·7070·7361·6c61·2055·6e69·7665··nd.Uppsala·Unive
000117f0:·7273·6974·792c·2053·7765·6465·6e2e·3c2f··rsity,·Sweden.</000117f0:·7273·6974·792c·2053·7765·6465·6e2e·3c2f··rsity,·Sweden.</
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Offset 458, 15 lines modifiedOffset 458, 15 lines modified
458 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons458 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons
459 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,459 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,
460 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov460 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
461 Project·leaders:·Berk·Hess,·Erik·Lindahl461 Project·leaders:·Berk·Hess,·Erik·Lindahl
462 ©·1991·–·2000:462 ©·1991·–·2000:
463 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.463 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
464 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.464 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
465 ©·2001·–·2026:465 ©·2001·–·2025:
466 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology466 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
467 ·····and·Uppsala·University,·Sweden.467 ·····and·Uppsala·University,·Sweden.
468 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time468 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time
469 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is469 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is
470 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not470 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
471 entirely·correct.471 entirely·correct.
472 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r472 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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./usr/share/doc/gromacs/html/searchindex.js
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Offset 11123, 15 lines modifiedOffset 11123, 15 lines modified
11123 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·372],11123 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·372],
11124 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·349,·372],11124 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·337,·349,·372],
11125 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·372],11125 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·372],
11126 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·372],11126 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·372],
11127 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·372],11127 ········"2023":·[38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·334,·372],
11128 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·345,·346,·353,·354,·367],11128 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·339,·345,·346,·353,·354,·367],
11129 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·347,·348,·350,·351,·352,·353,·354,·355,·356,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374,·375,·376],11129 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·347,·348,·350,·351,·352,·353,·354,·355,·356,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373,·374,·375,·376],
11130 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66[·...·truncated·by·diffoscope;·len:·1517,·SHA:·09c8603a44542c22c70264356cca363de33355444e4d61d975a1611d4e1072b2·...·]],11130 ········"2026":·[249,·357],
11131 ········"2027":·249,11131 ········"2027":·249,
11132 ········"2028":·249,11132 ········"2028":·249,
11133 ········"2029":·223,11133 ········"2029":·223,
11134 ········"2031":·242,11134 ········"2031":·242,
11135 ········"2032":·[49,·193,·242],11135 ········"2032":·[49,·193,·242],
11136 ········"2033":·223,11136 ········"2033":·223,
11137 ········"2037":·[223,·239,·250],11137 ········"2037":·[223,·239,·250],
Generated by diffoscope 296