{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.FEweuk4r/b1/mdanalysis_2.4.2+dfsg1-1_i386.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.FEweuk4r/b2/mdanalysis_2.4.2+dfsg1-1_i386.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,4 +1,4 @@\n \n- 4ca1879542d2abcd262719e2d99b09e1 2372240 doc optional python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb\n+ a71efb6e6a52c9b764f4f04f31a52554 2372384 doc optional python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb\n 337b0cbcbd0383632e3536467783e01a 4005152 debug optional python3-mdanalysis-dbgsym_2.4.2+dfsg1-1_i386.deb\n 26068905a44ebbc2a830259ec7d8ba47 1602000 python optional python3-mdanalysis_2.4.2+dfsg1-1_i386.deb\n"}, {"source1": "python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb", "source2": "python-mdanalysis-doc_2.4.2+dfsg1-1_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r-- 0 0 0 4 2023-01-09 16:54:02.000000 debian-binary\n--rw-r--r-- 0 0 0 13252 2023-01-09 16:54:02.000000 control.tar.xz\n--rw-r--r-- 0 0 0 2358796 2023-01-09 16:54:02.000000 data.tar.xz\n+-rw-r--r-- 0 0 0 13256 2023-01-09 16:54:02.000000 control.tar.xz\n+-rw-r--r-- 0 0 0 2358936 2023-01-09 16:54:02.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/share/doc/python-mdanalysis-doc/html/documentation_pages/analysis/wbridge_analysis.html", "source2": "./usr/share/doc/python-mdanalysis-doc/html/documentation_pages/analysis/wbridge_analysis.html", "unified_diff": "@@ -1005,23 +1005,23 @@\n

Deprecated since version 2.0.0: Will be removed in MDAnalysis 3.0.0. Please use\n results.timeseries instead.

\n \n \n \n
\n
\n-DEFAULT_ACCEPTORS = {'CHARMM27': ('OH2', 'ND1', 'OC2', 'SG', 'NE2', 'OE2', 'OD1', 'OH', 'OC1', 'OD2', 'OG1', 'OW', 'SD', 'OE1', 'O', 'OG'), 'GLYCAM06': ('OH', 'O2', 'OW', 'O', 'OY', 'OS', 'SM', 'NT', 'N'), 'other': ()}\uf0c1
\n+DEFAULT_ACCEPTORS = {'CHARMM27': ('OE1', 'SD', 'OD2', 'SG', 'OG', 'OH2', 'ND1', 'NE2', 'OG1', 'OC2', 'OW', 'O', 'OC1', 'OE2', 'OD1', 'OH'), 'GLYCAM06': ('NT', 'OY', 'N', 'OW', 'O', 'OS', 'SM', 'O2', 'OH'), 'other': ()}\uf0c1\n

default atom names that are treated as hydrogen acceptors\n (see Default heavy atom names for CHARMM27 force field.);\n use the keyword acceptors to add a list of additional acceptor names.

\n
\n \n
\n
\n-DEFAULT_DONORS = {'CHARMM27': ('OH2', 'OH', 'NE', 'ND1', 'OG1', 'SG', 'NE2', 'NH2', 'OW', 'NZ', 'NE1', 'NH1', 'ND2', 'OG', 'N'), 'GLYCAM06': ('OH', 'N', 'N3', 'OW', 'NT'), 'other': ()}\uf0c1
\n+DEFAULT_DONORS = {'CHARMM27': ('N', 'OW', 'ND2', 'NE', 'NH2', 'SG', 'OG', 'NZ', 'NH1', 'OH2', 'NE1', 'ND1', 'NE2', 'OH', 'OG1'), 'GLYCAM06': ('NT', 'N3', 'N', 'OW', 'OH'), 'other': ()}\uf0c1\n

default heavy atom names whose hydrogens are treated as donors\n (see Default heavy atom names for CHARMM27 force field.);\n use the keyword donors to add a list of additional donor names.

\n
\n \n
\n
\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -634,24 +634,24 @@\n List of hydrogen bonds between the selection 1 or selection 2 and\n the bridging waters, for each frame.\n New in version 2.0.0.\n timeseries\u00ef\u0083\u0081\n Alias to the results.timeseries attribute.\n Deprecated since version 2.0.0: Will be removed in MDAnalysis\n 3.0.0. Please use results.timeseries instead.\n- DEFAULT_ACCEPTORS= {'CHARMM27': ('OH2', 'ND1', 'OC2', 'SG', 'NE2',\n- 'OE2', 'OD1', 'OH', 'OC1', 'OD2', 'OG1', 'OW', 'SD', 'OE1', 'O', 'OG'),\n- 'GLYCAM06': ('OH', 'O2', 'OW', 'O', 'OY', 'OS', 'SM', 'NT', 'N'),\n+ DEFAULT_ACCEPTORS= {'CHARMM27': ('OE1', 'SD', 'OD2', 'SG', 'OG', 'OH2',\n+ 'ND1', 'NE2', 'OG1', 'OC2', 'OW', 'O', 'OC1', 'OE2', 'OD1', 'OH'),\n+ 'GLYCAM06': ('NT', 'OY', 'N', 'OW', 'O', 'OS', 'SM', 'O2', 'OH'),\n 'other': ()}\u00ef\u0083\u0081\n default atom names that are treated as hydrogen acceptors (see\n Default_heavy_atom_names_for_CHARMM27_force_field.); use the\n keywordacceptorsto add a list of additional acceptor names.\n- DEFAULT_DONORS= {'CHARMM27': ('OH2', 'OH', 'NE', 'ND1', 'OG1', 'SG',\n- 'NE2', 'NH2', 'OW', 'NZ', 'NE1', 'NH1', 'ND2', 'OG', 'N'), 'GLYCAM06':\n- ('OH', 'N', 'N3', 'OW', 'NT'), 'other': ()}\u00ef\u0083\u0081\n+ DEFAULT_DONORS= {'CHARMM27': ('N', 'OW', 'ND2', 'NE', 'NH2', 'SG',\n+ 'OG', 'NZ', 'NH1', 'OH2', 'NE1', 'ND1', 'NE2', 'OH', 'OG1'),\n+ 'GLYCAM06': ('NT', 'N3', 'N', 'OW', 'OH'), 'other': ()}\u00ef\u0083\u0081\n default heavy atom names whose hydrogens are treated as donors (see\n Default_heavy_atom_names_for_CHARMM27_force_field.); use the\n keyworddonorsto add a list of additional donor names.\n count_by_time(analysis_func=None, **kwargs)[source]\u00ef\u0083\u0081\n Counts the number of water bridges per timestep.\n The counting behaviour can be adjusted by supplying analysis_func.\n See Use_count_by_time for details.\n"}]}]}]}]}]}