{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.3GFaBjxk/b1/symfit_0.5.6-3_arm64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.3GFaBjxk/b2/symfit_0.5.6-3_arm64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,3 +1,3 @@\n \n- 1bbe23264d3704c3cd85ed127e2f2ecb 1120876 doc optional python3-symfit-doc_0.5.6-3_all.deb\n+ 3b5a318a9fd038c75369ac0d7f440c1d 1120956 doc optional python3-symfit-doc_0.5.6-3_all.deb\n ddbb7a0032231d55d66e22bc694c0007 44740 python optional python3-symfit_0.5.6-3_all.deb\n"}, {"source1": "python3-symfit-doc_0.5.6-3_all.deb", "source2": "python3-symfit-doc_0.5.6-3_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r-- 0 0 0 4 2024-06-30 17:53:58.000000 debian-binary\n--rw-r--r-- 0 0 0 3528 2024-06-30 17:53:58.000000 control.tar.xz\n--rw-r--r-- 0 0 0 1117156 2024-06-30 17:53:58.000000 data.tar.xz\n+-rw-r--r-- 0 0 0 3532 2024-06-30 17:53:58.000000 control.tar.xz\n+-rw-r--r-- 0 0 0 1117232 2024-06-30 17:53:58.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -70,44 +70,44 @@\n -rw-r--r-- 0 root (0) root (0) 2871 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/_static/nbsphinx-no-thumbnail.svg\n -rw-r--r-- 0 root (0) root (0) 90 2024-06-30 17:53:58.000000 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2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.html\n+-rw-r--r-- 0 root (0) root (0) 1491 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.ipynb.gz\n -rw-r--r-- 0 root (0) root (0) 14006 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_ODEModel.html\n--rw-r--r-- 0 root (0) root (0) 17456 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.html\n--rw-r--r-- 0 root (0) root (0) 24527 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.ipynb.gz\n+-rw-r--r-- 0 root (0) root (0) 17457 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.html\n+-rw-r--r-- 0 root (0) root (0) 24530 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.ipynb.gz\n -rw-r--r-- 0 root (0) root (0) 17290 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root (0) root (0) 15201 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/sigma.html\n -rw-r--r-- 0 root (0) root (0) 8947 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/style_guide.html\n -rw-r--r-- 0 root (0) root (0) 6010 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/technical_notes.html\n -rw-r--r-- 0 root (0) root (0) 30174 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit/html/tutorial.html\n drwxr-xr-x 0 root (0) root (0) 0 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit-doc/\n -rw-r--r-- 0 root (0) root (0) 620 2024-06-30 17:53:58.000000 ./usr/share/doc/python3-symfit-doc/changelog.Debian.gz\n -rw-r--r-- 0 root (0) root (0) 1456 2024-06-29 13:31:00.000000 ./usr/share/doc/python3-symfit-doc/copyright\n"}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.html", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.html", "unified_diff": "@@ -75,15 +75,15 @@\n \n \n
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\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-hiawv2od because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-awrgjzj1 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n 
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print('a =', fit_result.value(a))\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -33,17 +33,17 @@\n }\n model = CallableNumericalModel(model_dict, connectivity_mapping={z: {y, b}, y:\n {x, a}})\n \n # Apply model\n fit = Fit(model, x=x_data, z=z_data)\n fit_result = fit.execute()\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-hiawv2od\n-because the default path (/nonexistent/first-build/.config/matplotlib) is not a\n-writable directory; it is highly recommended to set the MPLCONFIGDIR\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-awrgjzj1\n+because the default path (/nonexistent/second-build/.config/matplotlib) is not\n+a writable directory; it is highly recommended to set the MPLCONFIGDIR\n environment variable to a writable directory, in particular to speed up the\n import of Matplotlib and to better support multiprocessing.\n [2]:\n print('a =', fit_result.value(a))\n a = 0.5999999737967958\n [3]:\n print('b =', fit_result.value(b))\n"}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.ipynb.gz", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_CallableNumericalModel_ode.ipynb.gz", "unified_diff": null, "details": [{"source1": "ex_CallableNumericalModel_ode.ipynb", "source2": "ex_CallableNumericalModel_ode.ipynb", "unified_diff": null, "details": [{"source1": "Pretty-printed", "source2": "Pretty-printed", "comments": ["Similarity: 0.9971354166666666%", "Differences: {\"'cells'\": \"{1: {'metadata': {'execution': {'iopub.execute_input': '2024-08-28T13:12:30.630445Z', \"", "            \"'iopub.status.busy': '2024-08-28T13:12:30.629914Z', 'iopub.status.idle': \"", "            \"'2024-08-28T13:12:32.715244Z', 'shell.execute_reply': \"", "            \"'2024-08-28T13:12:32.714317Z'}}, 'outputs': {0: {'text': ['Matplotlib created a \"", "            'temporary cache directory at /tmp/matplotlib-awrgjzj1 because the default path '", "            '(/nonexistent/second-build/.config/matplotlib) is no [\u2026]"], "unified_diff": "@@ -16,26 +16,26 @@\n             ]\n         },\n         {\n             \"cell_type\": \"code\",\n             \"execution_count\": 1,\n             \"metadata\": {\n                 \"execution\": {\n-                    \"iopub.execute_input\": \"2024-08-28T13:07:46.142753Z\",\n-                    \"iopub.status.busy\": \"2024-08-28T13:07:46.142230Z\",\n-                    \"iopub.status.idle\": \"2024-08-28T13:07:48.217753Z\",\n-                    \"shell.execute_reply\": \"2024-08-28T13:07:48.216807Z\"\n+                    \"iopub.execute_input\": \"2024-08-28T13:12:30.630445Z\",\n+                    \"iopub.status.busy\": \"2024-08-28T13:12:30.629914Z\",\n+                    \"iopub.status.idle\": \"2024-08-28T13:12:32.715244Z\",\n+                    \"shell.execute_reply\": \"2024-08-28T13:12:32.714317Z\"\n                 }\n             },\n             \"outputs\": [\n                 {\n                     \"name\": \"stderr\",\n                     \"output_type\": \"stream\",\n                     \"text\": [\n-                        \"Matplotlib created a temporary cache directory at /tmp/matplotlib-hiawv2od because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n+                        \"Matplotlib created a temporary cache directory at /tmp/matplotlib-awrgjzj1 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n                     ]\n                 }\n             ],\n             \"source\": [\n                 \"from symfit import variables, Parameter, Fit, D, ODEModel, CallableNumericalModel\\n\",\n                 \"import numpy as np\\n\",\n                 \"import matplotlib.pyplot as plt\\n\",\n@@ -65,18 +65,18 @@\n             ]\n         },\n         {\n             \"cell_type\": \"code\",\n             \"execution_count\": 2,\n             \"metadata\": {\n                 \"execution\": {\n-                    \"iopub.execute_input\": \"2024-08-28T13:07:48.223123Z\",\n-                    \"iopub.status.busy\": \"2024-08-28T13:07:48.222192Z\",\n-                    \"iopub.status.idle\": \"2024-08-28T13:07:48.227246Z\",\n-                    \"shell.execute_reply\": \"2024-08-28T13:07:48.226305Z\"\n+                    \"iopub.execute_input\": \"2024-08-28T13:12:32.720160Z\",\n+                    \"iopub.status.busy\": \"2024-08-28T13:12:32.719745Z\",\n+                    \"iopub.status.idle\": \"2024-08-28T13:12:32.724990Z\",\n+                    \"shell.execute_reply\": \"2024-08-28T13:12:32.723991Z\"\n                 }\n             },\n             \"outputs\": [\n                 {\n                     \"name\": \"stdout\",\n                     \"output_type\": \"stream\",\n                     \"text\": [\n@@ -89,18 +89,18 @@\n             ]\n         },\n         {\n             \"cell_type\": \"code\",\n             \"execution_count\": 3,\n             \"metadata\": {\n                 \"execution\": {\n-                    \"iopub.execute_input\": \"2024-08-28T13:07:48.231683Z\",\n-                    \"iopub.status.busy\": \"2024-08-28T13:07:48.231389Z\",\n-                    \"iopub.status.idle\": \"2024-08-28T13:07:48.235902Z\",\n-                    \"shell.execute_reply\": \"2024-08-28T13:07:48.235041Z\"\n+                    \"iopub.execute_input\": \"2024-08-28T13:12:32.729892Z\",\n+                    \"iopub.status.busy\": \"2024-08-28T13:12:32.729327Z\",\n+                    \"iopub.status.idle\": \"2024-08-28T13:12:32.735548Z\",\n+                    \"shell.execute_reply\": \"2024-08-28T13:12:32.734660Z\"\n                 }\n             },\n             \"outputs\": [\n                 {\n                     \"name\": \"stdout\",\n                     \"output_type\": \"stream\",\n                     \"text\": [\n"}]}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.html", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.html", "unified_diff": "@@ -53,15 +53,15 @@\n 
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\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-1elnxowj because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-dmuefnu_ because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n 
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Build a model corresponding to a bivariate normal distribution.

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[2]:\n 
\n
\n@@ -146,16 +146,16 @@\n rho 6.026420e-01 2.013810e-03\n sig_x 1.100898e-01 2.461684e-04\n sig_y 2.303400e-01 5.150556e-04\n x0 5.901317e-01 3.481346e-04\n y0 8.014040e-01 7.283990e-04\n Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\n Number of iterations 22\n-Objective <symfit.core.objectives.LogLikelihood object at 0xffff7c91c3e0>\n-Minimizer <symfit.core.minimizers.LBFGSB object at 0xffff7c91dc70>\n+Objective <symfit.core.objectives.LogLikelihood object at 0xffff7fe21910>\n+Minimizer <symfit.core.minimizers.LBFGSB object at 0xffff74cdf350>\n \n Goodness of fit qualifiers:\n likelihood inf\n log_likelihood 106241.24669486462\n objective_value -106241.24669486462\n
\n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -8,17 +8,17 @@\n [1]:\n import numpy as np\n from symfit import Variable, Parameter, Fit\n from symfit.core.objectives import LogLikelihood\n from symfit.distributions import BivariateGaussian\n import matplotlib.pyplot as plt\n \n-Matplotlib created a temporary cache directory at /tmp/matplotlib-1elnxowj\n-because the default path (/nonexistent/first-build/.config/matplotlib) is not a\n-writable directory; it is highly recommended to set the MPLCONFIGDIR\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-dmuefnu_\n+because the default path (/nonexistent/second-build/.config/matplotlib) is not\n+a writable directory; it is highly recommended to set the MPLCONFIGDIR\n environment variable to a writable directory, in particular to speed up the\n import of Matplotlib and to better support multiprocessing.\n Build a model corresponding to a bivariate normal distribution.\n [2]:\n x = Variable('x')\n y = Variable('y')\n x0 = Parameter('x0', value=0.6, min=0.5, max=0.7)\n@@ -71,16 +71,16 @@\n sig_x 1.100898e-01 2.461684e-04\n sig_y 2.303400e-01 5.150556e-04\n x0 5.901317e-01 3.481346e-04\n y0 8.014040e-01 7.283990e-04\n Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\n Number of iterations 22\n Objective \n-Minimizer \n+0xffff7fe21910>\n+Minimizer \n \n Goodness of fit qualifiers:\n likelihood inf\n log_likelihood 106241.24669486462\n objective_value -106241.24669486462\n We see that this result is in agreement with our data.\n *\b**\b**\b**\b**\b**\b* _\bs\bs_\by\by_\bm\bm_\bf\bf_\bi\bi_\bt\bt *\b**\b**\b**\b**\b**\b*\n"}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.ipynb.gz", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_bivariate_likelihood.ipynb.gz", "unified_diff": null, "details": [{"source1": "ex_bivariate_likelihood.ipynb", "source2": "ex_bivariate_likelihood.ipynb", "unified_diff": null, "details": [{"source1": "Pretty-printed", "source2": "Pretty-printed", "comments": ["Similarity: 0.9989949845679013%", "Differences: {\"'cells'\": \"{1: {'metadata': {'execution': {'iopub.execute_input': '2024-08-28T13:12:35.086112Z', \"", " \"'iopub.status.busy': '2024-08-28T13:12:35.084858Z', 'iopub.status.idle': \"", " \"'2024-08-28T13:12:36.294669Z', 'shell.execute_reply': \"", " \"'2024-08-28T13:12:36.293536Z'}}, 'outputs': {0: {'text': ['Matplotlib created a \"", " 'temporary cache directory at /tmp/matplotlib-dmuefnu_ because the default path '", " '(/nonexistent/second-build/.config/matplotlib) is no [\u2026]"], "unified_diff": "@@ -22,31 +22,31 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 1,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:50.672344Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:50.671360Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:07:51.897538Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:07:51.896533Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:35.086112Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:35.084858Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:36.294669Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:36.293536Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n \"outputs\": [\n {\n \"name\": \"stderr\",\n \"output_type\": \"stream\",\n \"text\": [\n- \"Matplotlib created a temporary cache directory at /tmp/matplotlib-1elnxowj because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n+ \"Matplotlib created a temporary cache directory at /tmp/matplotlib-dmuefnu_ because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n ]\n }\n ],\n \"source\": [\n \"import numpy as np\\n\",\n \"from symfit import Variable, Parameter, Fit\\n\",\n \"from symfit.core.objectives import LogLikelihood\\n\",\n@@ -67,18 +67,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 2,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:51.902733Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:51.901999Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:07:51.959008Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:07:51.958056Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:36.300651Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:36.299829Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:36.357455Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:36.356726Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -109,18 +109,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 3,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:51.963608Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:51.963319Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:07:51.977600Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:07:51.976673Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:36.362288Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:36.361998Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:36.376703Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:36.375727Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -136,18 +136,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 4,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:51.981754Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:51.981473Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:07:52.140930Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:07:52.140006Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:36.381170Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:36.380885Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:36.540010Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:36.539096Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -180,18 +180,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 5,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:52.145364Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:52.145081Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:07:56.944043Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:07:56.943062Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:36.544843Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:36.544541Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:41.345668Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:41.344909Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -227,16 +227,16 @@\n \"rho 6.026420e-01 2.013810e-03\\n\",\n \"sig_x 1.100898e-01 2.461684e-04\\n\",\n \"sig_y 2.303400e-01 5.150556e-04\\n\",\n \"x0 5.901317e-01 3.481346e-04\\n\",\n \"y0 8.014040e-01 7.283990e-04\\n\",\n \"Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\\n\",\n \"Number of iterations 22\\n\",\n- \"Objective \\n\",\n- \"Minimizer \\n\",\n+ \"Objective \\n\",\n+ \"Minimizer \\n\",\n \"\\n\",\n \"Goodness of fit qualifiers:\\n\",\n \"likelihood inf\\n\",\n \"log_likelihood 106241.24669486462\\n\",\n \"objective_value -106241.24669486462\\n\"\n ]\n }\n"}]}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_mexican_hat.html", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_mexican_hat.html", "unified_diff": "@@ -51,15 +51,15 @@\n \n \n
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\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-g4f360wd because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-r76hj9d3 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n 
\n
\n

First we define a model for the skewed mexican hat.

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[2]:\n 
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\n@@ -99,15 +99,15 @@\n
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[3]:\n 
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\n \"../_images/examples_ex_mexican_hat_5_1.png\"\n@@ -169,15 +169,15 @@\n
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\n exact value -2.35191046133532\n-num  value  -2.3491487551237533\n+num  value  -2.350518594704376\n 
\n
\n

Using DifferentialEvolution, we find the correct global minimum. However, it is not exactly the same as the analytical solution. This is because DifferentialEvolution is expensive to perform, and therefore does not solve to high precision by default. We could demand a higher precission from DifferentialEvolution, but this isn\u2019t worth the high computational cost. Instead, we will just tell symfit to perform DifferentialEvolution, followed by BFGS.

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[7]:\n 
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\n@@ -190,15 +190,15 @@\n
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\n exact value -2.35191046133532\n-num  value  -2.351910461335323\n+num  value  -2.351910461335324\n 
\n
\n

We see that now the proper solution has been found to much higher precision.

\n \n \n \n
\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -5,17 +5,17 @@\n then use DifferentialEvolution to find the global minimum.\n [1]:\n from symfit import Parameter, Variable, Model, Fit, solve, diff, N, re\n from symfit.core.minimizers import DifferentialEvolution, BFGS\n import numpy as np\n import matplotlib.pyplot as plt\n \n-Matplotlib created a temporary cache directory at /tmp/matplotlib-g4f360wd\n-because the default path (/nonexistent/first-build/.config/matplotlib) is not a\n-writable directory; it is highly recommended to set the MPLCONFIGDIR\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-r76hj9d3\n+because the default path (/nonexistent/second-build/.config/matplotlib) is not\n+a writable directory; it is highly recommended to set the MPLCONFIGDIR\n environment variable to a writable directory, in particular to speed up the\n import of Matplotlib and to better support multiprocessing.\n First we define a model for the skewed mexican hat.\n [2]:\n x = Parameter('x')\n x.min, x.max = -100, 100\n y = Variable('y')\n@@ -33,15 +33,15 @@\n plt.plot(xdata, ydata, label=r'$f(x)$')\n plt.xlabel('x')\n plt.ylabel('f(x)')\n plt.ylim(1.1 * ydata.min(), 1.1 * ydata.max())\n plt.legend()\n \n [3]:\n-\n+\n [../_images/examples_ex_mexican_hat_5_1.png]\n Using sympy, it is easy to solve the solution analytically, by finding the\n places where the gradient is zero.\n [4]:\n sol = solve(diff(model[y], x), x)\n # Give numerical value\n sol = [re(N(s)) for s in sol]\n@@ -61,29 +61,29 @@\n [6]:\n fit = Fit(model, minimizer=DifferentialEvolution)\n fit_result = fit.execute()\n print('exact value', sol[2])\n print('num value ', fit_result.value(x))\n \n exact value -2.35191046133532\n-num value -2.3491487551237533\n+num value -2.350518594704376\n Using DifferentialEvolution, we find the correct global minimum. However, it is\n not exactly the same as the analytical solution. This is because\n DifferentialEvolution is expensive to perform, and therefore does not solve to\n high precision by default. We could demand a higher precission from\n DifferentialEvolution, but this isn\u2019t worth the high computational cost.\n Instead, we will just tell symfit to perform DifferentialEvolution, followed by\n BFGS.\n [7]:\n fit = Fit(model, minimizer=[DifferentialEvolution, BFGS])\n fit_result = fit.execute()\n print('exact value', sol[2])\n print('num value ', fit_result.value(x))\n exact value -2.35191046133532\n-num value -2.351910461335323\n+num value -2.351910461335324\n We see that now the proper solution has been found to much higher precision.\n *\b**\b**\b**\b**\b**\b* _\bs\bs_\by\by_\bm\bm_\bf\bf_\bi\bi_\bt\bt *\b**\b**\b**\b**\b**\b*\n *\b**\b**\b**\b* N\bNa\bav\bvi\big\bga\bat\bti\bio\bon\bn *\b**\b**\b**\b*\n * _\bI_\bn_\bt_\br_\bo_\bd_\bu_\bc_\bt_\bi_\bo_\bn\n * _\bI_\bn_\bs_\bt_\ba_\bl_\bl_\ba_\bt_\bi_\bo_\bn\n * _\bT_\bu_\bt_\bo_\br_\bi_\ba_\bl\n * _\bF_\bi_\bt_\bt_\bi_\bn_\bg_\b _\bT_\by_\bp_\be_\bs\n"}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_mexican_hat.ipynb.gz", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_mexican_hat.ipynb.gz", "unified_diff": null, "details": [{"source1": "ex_mexican_hat.ipynb", "source2": "ex_mexican_hat.ipynb", "unified_diff": null, "details": [{"source1": "Pretty-printed", "source2": "Pretty-printed", "comments": ["Similarity: 0.9989207175925926%", "Differences: {\"'cells'\": \"{1: {'metadata': {'execution': {'iopub.execute_input': '2024-08-28T13:12:43.793410Z', \"", " \"'iopub.status.busy': '2024-08-28T13:12:43.792301Z', 'iopub.status.idle': \"", " \"'2024-08-28T13:12:45.058921Z', 'shell.execute_reply': \"", " \"'2024-08-28T13:12:45.057974Z'}}, 'outputs': {0: {'text': ['Matplotlib created a \"", " 'temporary cache directory at /tmp/matplotlib-r76hj9d3 because the default path '", " '(/nonexistent/second-build/.config/matplotlib) is no [\u2026]"], "unified_diff": "@@ -15,29 +15,29 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 1,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:07:59.465405Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:07:59.464314Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:00.681205Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:00.680388Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:43.793410Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:43.792301Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.058921Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.057974Z\"\n },\n \"pycharm\": {\n \"is_executing\": false\n }\n },\n \"outputs\": [\n {\n \"name\": \"stderr\",\n \"output_type\": \"stream\",\n \"text\": [\n- \"Matplotlib created a temporary cache directory at /tmp/matplotlib-g4f360wd because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n+ \"Matplotlib created a temporary cache directory at /tmp/matplotlib-r76hj9d3 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n ]\n }\n ],\n \"source\": [\n \"from symfit import Parameter, Variable, Model, Fit, solve, diff, N, re\\n\",\n \"from symfit.core.minimizers import DifferentialEvolution, BFGS\\n\",\n \"import numpy as np\\n\",\n@@ -57,18 +57,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 2,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:00.686574Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:00.685819Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:00.721359Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:00.720419Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.064327Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.063629Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.099514Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.098146Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -101,30 +101,30 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 3,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:00.725886Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:00.725606Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:00.969697Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:00.968686Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.105753Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.104523Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.348649Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.347733Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n \"outputs\": [\n {\n \"data\": {\n \"text/plain\": [\n- \"\"\n+ \"\"\n ]\n },\n \"execution_count\": 3,\n \"metadata\": {},\n \"output_type\": \"execute_result\"\n },\n {\n@@ -163,18 +163,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 4,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:00.974484Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:00.974189Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:01.068312Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:01.065865Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.353806Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.353052Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.440065Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.439170Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -210,18 +210,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 5,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:01.073411Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:01.073120Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:01.105104Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:01.104125Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.444374Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.444094Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.477193Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.476346Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -256,32 +256,32 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 6,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:01.114463Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:01.114173Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:01.194159Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:01.192734Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.481695Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.481394Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.572033Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.571038Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n \"outputs\": [\n {\n \"name\": \"stdout\",\n \"output_type\": \"stream\",\n \"text\": [\n \"exact value -2.35191046133532\\n\",\n- \"num value -2.3491487551237533\\n\"\n+ \"num value -2.350518594704376\\n\"\n ]\n }\n ],\n \"source\": [\n \"fit = Fit(model, minimizer=DifferentialEvolution)\\n\",\n \"fit_result = fit.execute()\\n\",\n \"print('exact value', sol[2])\\n\",\n@@ -300,32 +300,32 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 7,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:01.200746Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:01.199417Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:01.350380Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:01.349050Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:45.576764Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:45.576475Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:45.668837Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:45.667993Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n \"outputs\": [\n {\n \"name\": \"stdout\",\n \"output_type\": \"stream\",\n \"text\": [\n \"exact value -2.35191046133532\\n\",\n- \"num value -2.351910461335323\\n\"\n+ \"num value -2.351910461335324\\n\"\n ]\n }\n ],\n \"source\": [\n \"fit = Fit(model, minimizer=[DifferentialEvolution, BFGS])\\n\",\n \"fit_result = fit.execute()\\n\",\n \"print('exact value', sol[2])\\n\",\n"}]}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_ode_system.html", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_ode_system.html", "unified_diff": "@@ -53,15 +53,15 @@\n \n \n
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\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-3aquxxfx because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-bbsuyljs because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n 
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First we build a model representing the system of equations.

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[2]:\n 
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\n@@ -152,16 +152,16 @@\n Parameter Value Standard Deviation\n k1_f 9.540413e-02 4.440705e-03\n k1_r 1.065094e-01 7.165728e-02\n k2_f 2.706121e-01 5.305036e-02\n k2_r 2.633617e-01 5.647221e-02\n Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\n Number of iterations 30\n-Objective <symfit.core.objectives.LeastSquares object at 0xffff60b84110>\n-Minimizer <symfit.core.minimizers.LBFGSB object at 0xffff60b857f0>\n+Objective <symfit.core.objectives.LeastSquares object at 0xffff80bb1190>\n+Minimizer <symfit.core.minimizers.LBFGSB object at 0xffff81c4d820>\n \n Goodness of fit qualifiers:\n chi_squared 33.98549454195023\n objective_value 16.992747270975116\n r_squared 0.9936568366387369\n
\n \n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -6,17 +6,17 @@\n from symfit import (\n variables, parameters, ODEModel, D, Fit\n )\n from symfit.core.support import key2str\n import numpy as np\n import matplotlib.pyplot as plt\n \n-Matplotlib created a temporary cache directory at /tmp/matplotlib-3aquxxfx\n-because the default path (/nonexistent/first-build/.config/matplotlib) is not a\n-writable directory; it is highly recommended to set the MPLCONFIGDIR\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-bbsuyljs\n+because the default path (/nonexistent/second-build/.config/matplotlib) is not\n+a writable directory; it is highly recommended to set the MPLCONFIGDIR\n environment variable to a writable directory, in particular to speed up the\n import of Matplotlib and to better support multiprocessing.\n First we build a model representing the system of equations.\n [2]:\n t, F, MM, FMM, FMMF = variables('t, F, MM, FMM, FMMF')\n k1_f, k1_r, k2_f, k2_r = parameters('k1_f, k1_r, k2_f, k2_r')\n \n@@ -77,16 +77,16 @@\n k1_f 9.540413e-02 4.440705e-03\n k1_r 1.065094e-01 7.165728e-02\n k2_f 2.706121e-01 5.305036e-02\n k2_r 2.633617e-01 5.647221e-02\n Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\n Number of iterations 30\n Objective \n-Minimizer \n+0xffff80bb1190>\n+Minimizer \n \n Goodness of fit qualifiers:\n chi_squared 33.98549454195023\n objective_value 16.992747270975116\n r_squared 0.9936568366387369\n [5]:\n taxis = np.linspace(tdata.min(), tdata.max(), 1000)\n"}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_ode_system.ipynb.gz", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_ode_system.ipynb.gz", "unified_diff": null, "details": [{"source1": "ex_ode_system.ipynb", "source2": "ex_ode_system.ipynb", "unified_diff": null, "details": [{"source1": "Pretty-printed", "source2": "Pretty-printed", "comments": ["Similarity: 0.9989613970588236%", "Differences: {\"'cells'\": \"{1: {'metadata': {'execution': {'iopub.execute_input': '2024-08-28T13:12:48.374330Z', \"", " \"'iopub.status.busy': '2024-08-28T13:12:48.373280Z', 'iopub.status.idle': \"", " \"'2024-08-28T13:12:49.667047Z', 'shell.execute_reply': \"", " \"'2024-08-28T13:12:49.666111Z'}}, 'outputs': {0: {'text': ['Matplotlib created a \"", " 'temporary cache directory at /tmp/matplotlib-bbsuyljs because the default path '", " '(/nonexistent/second-build/.config/matplotlib) is no [\u2026]"], "unified_diff": "@@ -13,29 +13,29 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 1,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:03.750631Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:03.749592Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:05.028013Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:05.026977Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:48.374330Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:48.373280Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:49.667047Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:49.666111Z\"\n },\n \"pycharm\": {\n \"is_executing\": false\n }\n },\n \"outputs\": [\n {\n \"name\": \"stderr\",\n \"output_type\": \"stream\",\n \"text\": [\n- \"Matplotlib created a temporary cache directory at /tmp/matplotlib-3aquxxfx because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n+ \"Matplotlib created a temporary cache directory at /tmp/matplotlib-bbsuyljs because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n ]\n }\n ],\n \"source\": [\n \"from symfit import (\\n\",\n \"\\tvariables, parameters, ODEModel, D, Fit\\n\",\n \") \\n\",\n@@ -58,18 +58,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 2,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:05.033146Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:05.032402Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:05.073527Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:05.072580Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:49.672395Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:49.671662Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:49.712175Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:49.711316Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -118,18 +118,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 3,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:05.078068Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:05.077780Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:05.387291Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:05.386344Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:49.716485Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:49.716181Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:50.082527Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:50.081703Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -177,18 +177,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 4,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:05.392855Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:05.392553Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:10.553353Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:10.552386Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:50.087516Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:50.087212Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:55.255539Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:55.254650Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -201,16 +201,16 @@\n \"Parameter Value Standard Deviation\\n\",\n \"k1_f 9.540413e-02 4.440705e-03\\n\",\n \"k1_r 1.065094e-01 7.165728e-02\\n\",\n \"k2_f 2.706121e-01 5.305036e-02\\n\",\n \"k2_r 2.633617e-01 5.647221e-02\\n\",\n \"Status message CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH\\n\",\n \"Number of iterations 30\\n\",\n- \"Objective \\n\",\n- \"Minimizer \\n\",\n+ \"Objective \\n\",\n+ \"Minimizer \\n\",\n \"\\n\",\n \"Goodness of fit qualifiers:\\n\",\n \"chi_squared 33.98549454195023\\n\",\n \"objective_value 16.992747270975116\\n\",\n \"r_squared 0.9936568366387369\\n\"\n ]\n }\n@@ -229,18 +229,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 5,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:10.557733Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:10.557442Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:10.791487Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:10.790502Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:55.259796Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:55.259514Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:55.485126Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:55.484256Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n"}]}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_tikhonov.html", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_tikhonov.html", "unified_diff": "@@ -53,15 +53,15 @@\n \n \n
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\n-Matplotlib created a temporary cache directory at /tmp/matplotlib-7i3pdkcj because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-guufbfms because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\n 
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Say \\(f(t) = t * exp(- t)\\), and \\(F(s)\\) is the Laplace transform of \\(f(t)\\). Let us first evaluate this transform using sympy.

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\n \n Parameter Value        Standard Deviation\n a         5.449374e-02 None\n Status message         Optimization terminated successfully.\n Number of iterations   14\n-Objective              <symfit.core.objectives.LeastSquares object at 0xffff5482d310>\n-Minimizer              <symfit.core.minimizers.BFGS object at 0xffff54858200>\n+Objective              <symfit.core.objectives.LeastSquares object at 0xffff86018650>\n+Minimizer              <symfit.core.minimizers.BFGS object at 0xffff85e9c7d0>\n \n Goodness of fit qualifiers:\n chi_squared            3.2950323615883767e-19\n objective_value        1.6475161807941883e-19\n r_squared              -inf\n 
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\n \"../_images/examples_ex_tikhonov_17_1.png\"\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -7,17 +7,17 @@\n from symfit import (\n variables, parameters, Model, Fit, exp, laplace_transform, symbols,\n MatrixSymbol, sqrt, Inverse, CallableModel\n )\n import numpy as np\n import matplotlib.pyplot as plt\n \n-Matplotlib created a temporary cache directory at /tmp/matplotlib-7i3pdkcj\n-because the default path (/nonexistent/first-build/.config/matplotlib) is not a\n-writable directory; it is highly recommended to set the MPLCONFIGDIR\n+Matplotlib created a temporary cache directory at /tmp/matplotlib-guufbfms\n+because the default path (/nonexistent/second-build/.config/matplotlib) is not\n+a writable directory; it is highly recommended to set the MPLCONFIGDIR\n environment variable to a writable directory, in particular to speed up the\n import of Matplotlib and to better support multiprocessing.\n Say \\(f(t) = t * exp(- t)\\), and \\(F(s)\\) is the Laplace transform of \\(f(t)\\).\n Let us first evaluate this transform using sympy.\n [2]:\n t, f, s, F = variables('t, f, s, F')\n model = Model({f: t * exp(- t)})\n@@ -45,15 +45,15 @@\n = F(s)$')\n plt.xlabel(r'$s_i$')\n plt.ylabel(r'$F(s_i)$')\n plt.xlim(0, None)\n plt.legend()\n \n [3]:\n-\n+\n [../_images/examples_ex_tikhonov_5_1.png]\n We will now invert this data, using the procedure outlined in \\cite{}.\n [4]:\n N_s = symbols('N_s', integer=True) # Number of s_i points\n \n M = MatrixSymbol('M', N_s, N_s)\n W = MatrixSymbol('W', N_s, N_s)\n@@ -100,16 +100,16 @@\n \n \n Parameter Value Standard Deviation\n a 5.449374e-02 None\n Status message Optimization terminated successfully.\n Number of iterations 14\n Objective \n-Minimizer \n+0xffff86018650>\n+Minimizer \n \n Goodness of fit qualifiers:\n chi_squared 3.2950323615883767e-19\n objective_value 1.6475161807941883e-19\n r_squared -inf\n /PKGBUILDDIR/symfit/core/fit_results.py:279: RuntimeWarning: divide by zero\n encountered in scalar divide\n@@ -124,15 +124,15 @@\n plt.plot(s_data[1:], F_re, label=r'$F_{re}(s)$')\n plt.xlabel(r'$x$')\n plt.xlabel(r'$F(s)$')\n plt.xlim(0, None)\n plt.legend()\n (100,) (100,)\n [8]:\n-\n+\n [../_images/examples_ex_tikhonov_15_2.png]\n Reconstruct \\(f(t)\\) and compare with the known original.\n [9]:\n t_data = np.linspace(0, 10, 101)\n f_data = model(t=t_data).f\n f_re_func = lambda x: - np.exp(- x * s_data[1:]).dot(ans.c) / fit_result.value\n (a)**2\n@@ -142,15 +142,15 @@\n plt.axvline(0, color='black')\n plt.plot(t_data, f_data, label=r'$f(t)$')\n plt.plot(t_data, f_re, label=r'$f_{re}(t)$')\n plt.xlabel(r'$t$')\n plt.xlabel(r'$f(t)$')\n plt.legend()\n [9]:\n-\n+\n [../_images/examples_ex_tikhonov_17_1.png]\n Not bad, for an ill-defined problem.\n *\b**\b**\b**\b**\b**\b* _\bs\bs_\by\by_\bm\bm_\bf\bf_\bi\bi_\bt\bt *\b**\b**\b**\b**\b**\b*\n *\b**\b**\b**\b* N\bNa\bav\bvi\big\bga\bat\bti\bio\bon\bn *\b**\b**\b**\b*\n * _\bI_\bn_\bt_\br_\bo_\bd_\bu_\bc_\bt_\bi_\bo_\bn\n * _\bI_\bn_\bs_\bt_\ba_\bl_\bl_\ba_\bt_\bi_\bo_\bn\n * _\bT_\bu_\bt_\bo_\br_\bi_\ba_\bl\n"}]}, {"source1": "./usr/share/doc/python3-symfit/html/examples/ex_tikhonov.ipynb.gz", "source2": "./usr/share/doc/python3-symfit/html/examples/ex_tikhonov.ipynb.gz", "unified_diff": null, "details": [{"source1": "ex_tikhonov.ipynb", "source2": "ex_tikhonov.ipynb", "unified_diff": null, "details": [{"source1": "Pretty-printed", "source2": "Pretty-printed", "comments": ["Similarity: 0.9990797305764412%", "Differences: {\"'cells'\": \"{1: {'metadata': {'execution': {'iopub.execute_input': '2024-08-28T13:12:57.733780Z', \"", " \"'iopub.status.busy': '2024-08-28T13:12:57.732715Z', 'iopub.status.idle': \"", " \"'2024-08-28T13:12:58.933669Z', 'shell.execute_reply': \"", " \"'2024-08-28T13:12:58.932892Z'}}, 'outputs': {0: {'text': ['Matplotlib created a \"", " 'temporary cache directory at /tmp/matplotlib-guufbfms because the default path '", " '(/nonexistent/second-build/.config/matplotlib) is no [\u2026]"], "unified_diff": "@@ -14,29 +14,29 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 1,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:13.003598Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:13.002453Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:14.189410Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:14.188510Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:57.733780Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:57.732715Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:58.933669Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:58.932892Z\"\n },\n \"pycharm\": {\n \"is_executing\": false\n }\n },\n \"outputs\": [\n {\n \"name\": \"stderr\",\n \"output_type\": \"stream\",\n \"text\": [\n- \"Matplotlib created a temporary cache directory at /tmp/matplotlib-7i3pdkcj because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n+ \"Matplotlib created a temporary cache directory at /tmp/matplotlib-guufbfms because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.\\n\"\n ]\n }\n ],\n \"source\": [\n \"from symfit import (\\n\",\n \"\\tvariables, parameters, Model, Fit, exp, laplace_transform, symbols, \\n\",\n \"\\tMatrixSymbol, sqrt, Inverse, CallableModel\\n\",\n@@ -58,18 +58,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 2,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:14.195638Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:14.194312Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:14.548129Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:14.547184Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:58.938803Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:58.938099Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:59.235394Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:59.234484Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -107,30 +107,30 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 3,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:14.552533Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:14.552259Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:14.782417Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:14.781557Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:59.239765Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:59.239477Z\",\n+ 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\"iopub.status.busy\": \"2024-08-28T13:08:14.811519Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:14.815718Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:14.814771Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:59.501905Z\",\n+ \"iopub.status.busy\": \"2024-08-28T13:12:59.501644Z\",\n+ \"iopub.status.idle\": \"2024-08-28T13:12:59.507131Z\",\n+ \"shell.execute_reply\": \"2024-08-28T13:12:59.505727Z\"\n },\n \"pycharm\": {\n \"is_executing\": false,\n \"metadata\": false,\n \"name\": \"#%%\\n\"\n }\n },\n@@ -315,18 +315,18 @@\n ]\n },\n {\n \"cell_type\": \"code\",\n \"execution_count\": 7,\n \"metadata\": {\n \"execution\": {\n- \"iopub.execute_input\": \"2024-08-28T13:08:14.819949Z\",\n- \"iopub.status.busy\": \"2024-08-28T13:08:14.819678Z\",\n- \"iopub.status.idle\": \"2024-08-28T13:08:14.878742Z\",\n- \"shell.execute_reply\": \"2024-08-28T13:08:14.877898Z\"\n+ \"iopub.execute_input\": \"2024-08-28T13:12:59.511789Z\",\n+ \"iopub.status.busy\": 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12, 13, 14, 15, 17, 20, 22, 24, 26],\n \"20\": [12, 17],\n \"200\": [17, 22],\n \"2000\": 11,\n \"201\": 10,\n \"2014\": [7, 8, 9],\n \"2020\": [7, 8, 9],\n@@ -1455,22 +1454,21 @@\n \"305036e\": 12,\n \"31\": [4, 7],\n \"31e29e235407e4913dc0ec403af7ed524372b612\": 23,\n \"325068e\": 6,\n \"33\": 12,\n \"3367571\": 26,\n \"34\": 17,\n- \"3491487551237533\": 10,\n \"35\": [4, 7],\n+ \"350518594704376\": 10,\n \"35191046133532\": 10,\n- \"351910461335323\": 10,\n+ \"351910461335324\": 10,\n \"3718\": [4, 7],\n \"39\": 5,\n \"3922\": [4, 7],\n- \"3aquxxfx\": 12,\n \"3rd\": 19,\n \"4\": [2, 5, 6, 10, 12, 13, 15, 17, 22, 26],\n \"40\": 22,\n \"400000e\": 13,\n \"42\": [4, 5, 7, 11, 12, 17],\n \"423\": 22,\n \"44\": [6, 17],\n@@ -1516,15 +1514,14 @@\n \"706121e\": 12,\n \"71\": 17,\n \"725019e\": 6,\n \"73\": 17,\n \"736484e\": 14,\n \"780338e\": 13,\n \"7949\": [4, 7],\n- \"7i3pdkcj\": 15,\n \"8\": [5, 6, 7, 8, 9, 13, 15, 17],\n \"80\": 4,\n \"827\": [4, 7],\n \"846406e\": 6,\n \"8558226069368662\": 13,\n \"857033e\": 6,\n \"8739\": [4, 7],\n@@ -1698,14 +1695,15 @@\n \"attribut\": 22,\n \"automat\": [0, 17, 22],\n \"avail\": [16, 17, 22],\n \"avarag\": 23,\n \"avoid\": 0,\n \"awai\": 22,\n \"awar\": [17, 22],\n+ \"awrgjzj1\": 3,\n \"ax\": [14, 22],\n \"ax1\": 14,\n \"ax2\": 14,\n \"axhlin\": [10, 15],\n \"axi\": 17,\n \"axvlin\": [10, 15],\n \"b\": [2, 3, 4, 6, 11, 13, 17, 22, 26],\n@@ -1732,14 +1730,15 @@\n \"basemodel\": [0, 22],\n \"basenumericalmodel\": 22,\n \"baseobject\": [0, 22],\n \"basi\": [0, 22],\n \"basic\": [0, 17, 22],\n \"basin\": [18, 22],\n \"basinhop\": [17, 22],\n+ \"bbsuylj\": 12,\n \"beauti\": 20,\n \"beautifulli\": 1,\n \"becaus\": [0, 3, 5, 10, 12, 15, 16, 17, 20, 22],\n \"becom\": [17, 20, 24],\n \"been\": [0, 10, 13, 17, 20, 21, 22, 26],\n \"befor\": 22,\n \"begin\": [6, 13],\n@@ -1962,14 +1961,15 @@\n \"disp\": 17,\n \"displai\": 22,\n \"distinct\": 0,\n \"distinguish\": 22,\n \"distribut\": [5, 8, 11, 17, 18, 23, 26],\n \"distrubut\": 20,\n \"divid\": [5, 15],\n+ \"dmuefnu_\": 5,\n \"do\": [0, 1, 2, 10, 13, 17, 23, 26],\n \"doc\": [17, 22, 26],\n \"document\": 26,\n \"doe\": [0, 10, 13, 17, 20, 22, 23, 26],\n \"doesn\": 17,\n \"domain\": [1, 17],\n \"don\": [1, 17, 22],\n@@ -2080,15 +2080,15 @@\n \"figur\": 22,\n \"filecopyrighttext\": [7, 8, 9],\n \"fill\": 22,\n \"final\": [5, 20],\n \"find\": [10, 15, 16, 17, 22],\n \"finit\": 22,\n \"finite_differ\": 22,\n- \"first\": [3, 4, 5, 7, 10, 11, 12, 13, 15, 17, 22],\n+ \"first\": [4, 7, 10, 11, 12, 13, 15, 17, 22],\n \"firstli\": 17,\n \"fit\": [2, 3, 4, 6, 7, 8, 9, 10, 12, 13, 15, 16, 18, 20, 23, 24, 25, 26],\n \"fit_no_sigma\": 23,\n \"fit_result\": [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 17, 20, 22, 23, 26],\n \"fit_result_no_sigma\": 23,\n \"fitmodelswithmeasurementerror\": 23,\n \"fitresult\": [0, 17, 22, 26],\n@@ -2126,15 +2126,14 @@\n \"func_deriv\": 17,\n \"function\": [0, 2, 3, 6, 8, 9, 16, 17, 20, 21, 22, 26],\n \"function_dict\": 22,\n \"further\": [17, 22],\n \"furthermor\": [17, 20],\n \"futur\": 22,\n \"g\": [0, 17, 22],\n- \"g4f360wd\": 10,\n \"game\": 17,\n \"gamma\": 17,\n \"gaussian\": [8, 16, 20, 22],\n \"ge\": [17, 20],\n \"gener\": [2, 5, 9, 12, 13, 14, 15, 17, 22, 23, 26],\n \"geometri\": 17,\n \"get\": [0, 17, 22, 23, 26],\n@@ -2158,14 +2157,15 @@\n \"green\": 17,\n \"grid\": [17, 22],\n \"group\": [17, 22],\n \"gt\": [5, 10, 12, 15],\n \"guarante\": 17,\n \"guess\": [10, 17, 18, 19, 20, 22],\n \"guid\": 18,\n+ \"guufbfm\": 15,\n \"ha\": [0, 10, 15, 17, 20, 22, 23, 26],\n \"hack\": 22,\n \"handl\": 22,\n \"happen\": 22,\n \"hard\": 22,\n \"harmon\": 17,\n \"hascovariancematrix\": 22,\n@@ -2179,15 +2179,14 @@\n \"hessian\": [0, 22],\n \"hessian_from_model\": 22,\n \"hessianminim\": 22,\n \"hessianmodel\": [0, 22],\n \"hessianobject\": [0, 22],\n \"hessianobjectivejacapprox\": 22,\n \"hetting\": 24,\n- \"hiawv2od\": 3,\n \"high\": [1, 10],\n \"higher\": 10,\n \"highli\": [1, 3, 5, 10, 12, 15, 20],\n \"hist\": 5,\n \"hist2d\": 5,\n \"histor\": 17,\n \"hold\": [22, 26],\n@@ -2643,14 +2642,15 @@\n \"quad\": [6, 13],\n \"qualifi\": [5, 12, 15, 22],\n \"qualiti\": [0, 15, 22, 26],\n \"quantiti\": [15, 22],\n \"question\": 17,\n \"quit\": [12, 17],\n \"r\": [2, 10, 12, 15, 17, 22],\n+ \"r76hj9d3\": 10,\n \"r_i\": 22,\n \"r_squar\": [12, 15, 22, 26],\n \"rais\": 22,\n \"rand1bin\": 22,\n \"random\": [2, 5, 11, 12, 13, 14, 15, 17, 22, 23, 26],\n \"rang\": [6, 8, 17, 20, 22],\n \"rate\": [17, 22],\n@@ -2732,15 +2732,15 @@\n \"scipyhessianminim\": 22,\n \"scipyminim\": [0, 22],\n \"screenshot\": [7, 8, 9],\n \"script\": 13,\n \"seaborn\": [1, 14],\n \"seamlessli\": 22,\n \"search\": 18,\n- \"second\": 22,\n+ \"second\": [3, 5, 10, 12, 15, 22],\n \"secondli\": 17,\n \"secretli\": 15,\n \"section\": 17,\n \"see\": [5, 8, 10, 11, 12, 17, 19, 22, 23, 26],\n \"seed\": [5, 11, 12, 13, 15, 22, 23],\n \"seem\": 17,\n \"select\": [17, 22, 23],\n"}]}]}]}]}]}