{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.dVjlyUfl/b1/mdanalysis_2.10.0-1_amd64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.dVjlyUfl/b2/mdanalysis_2.10.0-1_amd64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,4 +1,4 @@\n \n- 879f870c2e742553fc4b9d090d5322d9 3549020 doc optional python-mdanalysis-doc_2.10.0-1_all.deb\n+ c6ddec79da91169fed75ff8f900a3397 3549032 doc optional python-mdanalysis-doc_2.10.0-1_all.deb\n 950ab962d25050a8506e59809e4bfbe0 5861684 debug optional python3-mdanalysis-dbgsym_2.10.0-1_amd64.deb\n 34582587e1fb9ed10ac63c8ad540a86d 4228700 python optional python3-mdanalysis_2.10.0-1_amd64.deb\n"}, {"source1": "python-mdanalysis-doc_2.10.0-1_all.deb", "source2": "python-mdanalysis-doc_2.10.0-1_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r-- 0 0 0 4 2025-10-21 22:50:11.000000 debian-binary\n -rw-r--r-- 0 0 0 14208 2025-10-21 22:50:11.000000 control.tar.xz\n--rw-r--r-- 0 0 0 3534620 2025-10-21 22:50:11.000000 data.tar.xz\n+-rw-r--r-- 0 0 0 3534632 2025-10-21 22:50:11.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/share/doc/python-mdanalysis-doc/html/documentation_pages/analysis/wbridge_analysis.html", "source2": "./usr/share/doc/python-mdanalysis-doc/html/documentation_pages/analysis/wbridge_analysis.html", "unified_diff": "@@ -906,23 +906,23 @@\n

Deprecated since version 2.0.0: Will be removed in MDAnalysis 3.0.0. Please use\n results.timeseries instead.

\n \n \n \n
\n
\n-DEFAULT_ACCEPTORS = {'CHARMM27': ('O', 'OH2', 'OE2', 'OG', 'NE2', 'OE1', 'ND1', 'OD2', 'OD1', 'OH', 'OW', 'OG1', 'SD', 'OC1', 'OC2', 'SG'), 'GLYCAM06': ('O', 'N', 'NT', 'OH', 'O2', 'OW', 'SM', 'OY', 'OS'), 'other': ()}\u00b6
\n+DEFAULT_ACCEPTORS = {'CHARMM27': ('OC1', 'SG', 'OH2', 'OW', 'OG', 'OD1', 'SD', 'O', 'OC2', 'OE1', 'NE2', 'OD2', 'OH', 'ND1', 'OG1', 'OE2'), 'GLYCAM06': ('SM', 'OY', 'OH', 'OW', 'OS', 'N', 'NT', 'O2', 'O'), 'other': ()}\u00b6\n

default atom names that are treated as hydrogen acceptors\n (see Default heavy atom names for CHARMM27 force field.);\n use the keyword acceptors to add a list of additional acceptor names.

\n
\n \n
\n
\n-DEFAULT_DONORS = {'CHARMM27': ('NZ', 'NH2', 'NE1', 'N', 'OH2', 'ND2', 'OH', 'OW', 'NE', 'OG', 'NH1', 'OG1', 'NE2', 'ND1', 'SG'), 'GLYCAM06': ('OW', 'N3', 'N', 'NT', 'OH'), 'other': ()}\u00b6
\n+DEFAULT_DONORS = {'CHARMM27': ('NZ', 'SG', 'NE2', 'NH1', 'OH2', 'OH', 'OW', 'NH2', 'ND1', 'N', 'NE1', 'OG', 'ND2', 'OG1', 'NE'), 'GLYCAM06': ('N3', 'OW', 'N', 'NT', 'OH'), 'other': ()}\u00b6\n

default heavy atom names whose hydrogens are treated as donors\n (see Default heavy atom names for CHARMM27 force field.);\n use the keyword donors to add a list of additional donor names.

\n
\n \n
\n
\n", "details": [{"source1": "html2text {}", "source2": "html2text {}", "unified_diff": "@@ -554,24 +554,24 @@\n List of hydrogen bonds between the selection 1 or selection 2 and\n the bridging waters, for each frame.\n Added in version 2.0.0.\n timeseries\u00b6\n Alias to the results.timeseries attribute.\n Deprecated since version 2.0.0: Will be removed in MDAnalysis\n 3.0.0. Please use results.timeseries instead.\n- DEFAULT_ACCEPTORS = {'CHARMM27': ('O', 'OH2', 'OE2', 'OG', 'NE2',\n- 'OE1', 'ND1', 'OD2', 'OD1', 'OH', 'OW', 'OG1', 'SD', 'OC1', 'OC2',\n- 'SG'), 'GLYCAM06': ('O', 'N', 'NT', 'OH', 'O2', 'OW', 'SM', 'OY',\n- 'OS'), 'other': ()}\u00b6\n+ DEFAULT_ACCEPTORS = {'CHARMM27': ('OC1', 'SG', 'OH2', 'OW', 'OG',\n+ 'OD1', 'SD', 'O', 'OC2', 'OE1', 'NE2', 'OD2', 'OH', 'ND1', 'OG1',\n+ 'OE2'), 'GLYCAM06': ('SM', 'OY', 'OH', 'OW', 'OS', 'N', 'NT', 'O2',\n+ 'O'), 'other': ()}\u00b6\n default atom names that are treated as hydrogen acceptors (see\n Default_heavy_atom_names_for_CHARMM27_force_field.); use the\n keywordacceptorsto add a list of additional acceptor names.\n- DEFAULT_DONORS = {'CHARMM27': ('NZ', 'NH2', 'NE1', 'N', 'OH2', 'ND2',\n- 'OH', 'OW', 'NE', 'OG', 'NH1', 'OG1', 'NE2', 'ND1', 'SG'), 'GLYCAM06':\n- ('OW', 'N3', 'N', 'NT', 'OH'), 'other': ()}\u00b6\n+ DEFAULT_DONORS = {'CHARMM27': ('NZ', 'SG', 'NE2', 'NH1', 'OH2', 'OH',\n+ 'OW', 'NH2', 'ND1', 'N', 'NE1', 'OG', 'ND2', 'OG1', 'NE'), 'GLYCAM06':\n+ ('N3', 'OW', 'N', 'NT', 'OH'), 'other': ()}\u00b6\n default heavy atom names whose hydrogens are treated as donors (see\n Default_heavy_atom_names_for_CHARMM27_force_field.); use the\n keyworddonorsto add a list of additional donor names.\n count_by_time(analysis_func=None, **kwargs)[source]\u00b6\n Counts the number of water bridges per timestep.\n The counting behaviour can be adjusted by supplying analysis_func.\n See Use_count_by_time for details.\n"}]}]}]}]}]}