{"diffoscope-json-version": 1, "source1": "/srv/reproducible-results/rbuild-debian/r-b-build.5BURtxqo/b1/openms_2.6.0+cleaned1-4_arm64.changes", "source2": "/srv/reproducible-results/rbuild-debian/r-b-build.5BURtxqo/b2/openms_2.6.0+cleaned1-4_arm64.changes", "unified_diff": null, "details": [{"source1": "Files", "source2": "Files", "unified_diff": "@@ -1,9 +1,9 @@\n \n- 497de81160aed872f3b0947dce9f6a74 880204 libdevel optional libopenms-dev_2.6.0+cleaned1-4_arm64.deb\n- e6c5e57e09952dfd5aad5d2d476fed88 218873160 debug optional libopenms2.6.0-dbgsym_2.6.0+cleaned1-4_arm64.deb\n- da52f2aaf5cd8ce228ff52f251025d46 7276076 libs optional libopenms2.6.0_2.6.0+cleaned1-4_arm64.deb\n+ dd5da8790775a9e79e2a61c5b50d81e1 880204 libdevel optional libopenms-dev_2.6.0+cleaned1-4_arm64.deb\n+ f035df067d15d90e0381dbb5c41a5e90 218878400 debug optional libopenms2.6.0-dbgsym_2.6.0+cleaned1-4_arm64.deb\n+ 5750d18f260c111fb74e7357d360cdfa 7274024 libs optional libopenms2.6.0_2.6.0+cleaned1-4_arm64.deb\n  7c8a3ea518c636cb086c11e6f4ad1033 4291064 science optional openms-common_2.6.0+cleaned1-4_all.deb\n- c2c59bbf5223ede35275510648377bd2 43028112 doc optional openms-doc_2.6.0+cleaned1-4_all.deb\n+ 779a2099d650ae8c18ac4ffcbb9711a9 43028116 doc optional openms-doc_2.6.0+cleaned1-4_all.deb\n  daf16ac3814bc02de25abd7824aef9a6 53584 science optional openms_2.6.0+cleaned1-4_all.deb\n  fe85b0dc3e0dbeaee0965507a3ad2811 84782128 debug optional topp-dbgsym_2.6.0+cleaned1-4_arm64.deb\n- c09c7ed05f4b043280f6fd64dea9d101 2842024 science optional topp_2.6.0+cleaned1-4_arm64.deb\n+ aa961f5bf74da7d052383c204785a685 2841988 science optional topp_2.6.0+cleaned1-4_arm64.deb\n"}, {"source1": "libopenms-dev_2.6.0+cleaned1-4_arm64.deb", "source2": "libopenms-dev_2.6.0+cleaned1-4_arm64.deb", "unified_diff": null, "details": [{"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/include/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-aarch64-linux-gnu/src/openms/openms_package_version.h", "source2": "./usr/include/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-aarch64-linux-gnu/src/openms/openms_package_version.h", "unified_diff": "@@ -46,12 +46,12 @@\n // $Maintainer: Chris Bielow $\n // $Authors: $\n // --------------------------------------------------------------------------\n \n #ifndef OPENMS_PACKAGE_VERSION_H\n #define OPENMS_PACKAGE_VERSION_H\n \n-#define OPENMS_PACKAGE_VERSION \"2.6.0-pre-exported-20231223\"\n+#define OPENMS_PACKAGE_VERSION \"2.6.0-pre-exported-20231224\"\n #define OPENMS_GIT_SHA1 \"exported\"\n #define OPENMS_GIT_BRANCH \"exported\"\n \n #endif\n"}]}]}]}, {"source1": "libopenms2.6.0_2.6.0+cleaned1-4_arm64.deb", "source2": "libopenms2.6.0_2.6.0+cleaned1-4_arm64.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2023-12-23 14:20:41.000000 debian-binary\n--rw-r--r--   0        0        0     1644 2023-12-23 14:20:41.000000 control.tar.xz\n--rw-r--r--   0        0        0  7274240 2023-12-23 14:20:41.000000 data.tar.xz\n+-rw-r--r--   0        0        0     1648 2023-12-23 14:20:41.000000 control.tar.xz\n+-rw-r--r--   0        0        0  7272184 2023-12-23 14:20:41.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/lib/aarch64-linux-gnu/libOpenMS.so.2.6.0", "source2": "./usr/lib/aarch64-linux-gnu/libOpenMS.so.2.6.0", "comments": ["File has been modified after NT_GNU_BUILD_ID has been applied."], "unified_diff": null, "details": [{"source1": "readelf --wide --notes {}", "source2": "readelf --wide --notes {}", "unified_diff": "@@ -1,8 +1,8 @@\n \n Displaying notes found in: .note.gnu.property\n   Owner                Data size \tDescription\n   GNU                  0x00000010\tNT_GNU_PROPERTY_TYPE_0\t      Properties: AArch64 feature: BTI, PAC\n \n Displaying notes found in: .note.gnu.build-id\n   Owner                Data size \tDescription\n-  GNU                  0x00000014\tNT_GNU_BUILD_ID (unique build ID bitstring)\t    Build ID: 30265e46b0007bfd3e33fc27c615d03454693972\n+  GNU                  0x00000014\tNT_GNU_BUILD_ID (unique build ID bitstring)\t    Build ID: 9558557bf44ce90efa55b18eb246fa8241cbb023\n"}, {"source1": "strings --all --bytes=8 {}", "source2": "strings --all --bytes=8 {}", "unified_diff": "@@ -13385,15 +13385,15 @@\n Year is out of valid range: 1400..9999\n Month number is out of range 1..12\n Day of month value is out of range 1..31\n could not convert calendar time to local time\n Day of month is not valid for year\n Dec 23 2023\n 14:20:41\n-2.6.0-pre-exported-20231223\n+2.6.0-pre-exported-20231224\n exported\n Running: \n Process '\n ' failed to start. Does it exist? Is it executable?\n ' crashed hard (segfault-like). Please check the log.\n ' did not finish successfully (exit code: \n ). Please check the log.\n"}, {"source1": "readelf --wide --decompress --hex-dump=.rodata {}", "source2": "readelf --wide --decompress --hex-dump=.rodata {}", "unified_diff": "@@ -538,15 +538,15 @@\n   0x012375e0 61722074 696d6520 746f206c 6f63616c ar time to local\n   0x012375f0 2074696d 65000000 44617920 6f66206d  time...Day of m\n   0x01237600 6f6e7468 20697320 6e6f7420 76616c69 onth is not vali\n   0x01237610 6420666f 72207965 61720000 00000000 d for year......\n   0x01237620 44656320 32332032 30323300 00000000 Dec 23 2023.....\n   0x01237630 31343a32 303a3431 00000000 00000000 14:20:41........\n   0x01237640 322e362e 302d7072 652d6578 706f7274 2.6.0-pre-export\n-  0x01237650 65642d32 30323331 32323300 00000000 ed-20231223.....\n+  0x01237650 65642d32 30323331 32323400 00000000 ed-20231224.....\n   0x01237660 6578706f 72746564 00000000 00000000 exported........\n   0x01237670 52756e6e 696e673a 20000000 00000000 Running: .......\n   0x01237680 50726f63 65737320 27000000 00000000 Process '.......\n   0x01237690 27206661 696c6564 20746f20 73746172 ' failed to star\n   0x012376a0 742e2044 6f657320 69742065 78697374 t. Does it exist\n   0x012376b0 3f204973 20697420 65786563 75746162 ? Is it executab\n   0x012376c0 6c653f00 00000000 27206372 61736865 le?.....' crashe\n"}, {"source1": "readelf --wide --decompress --hex-dump=.gnu_debuglink {}", "source2": "readelf --wide --decompress --hex-dump=.gnu_debuglink {}", "comments": ["error from `readelf --wide --decompress --hex-dump=.gnu_debuglink {}`:", "readelf: Error: no .dynamic section in the dynamic segment"], "unified_diff": "@@ -1,7 +1,7 @@\n \n Hex dump of section '.gnu_debuglink':\n-  0x00000000 32363565 34366230 30303762 66643365 265e46b0007bfd3e\n-  0x00000010 33336663 32376336 31356430 33343534 33fc27c615d03454\n-  0x00000020 36393339 37322e64 65627567 00000000 693972.debug....\n-  0x00000030 795c09e0                            y\\..\n+  0x00000000 35383535 37626634 34636539 30656661 58557bf44ce90efa\n+  0x00000010 35356231 38656232 34366661 38323431 55b18eb246fa8241\n+  0x00000020 63626230 32332e64 65627567 00000000 cbb023.debug....\n+  0x00000030 6d21d376                            m!.v\n \n"}]}]}]}]}, {"source1": "openms-doc_2.6.0+cleaned1-4_all.deb", "source2": "openms-doc_2.6.0+cleaned1-4_all.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2023-12-23 14:20:41.000000 debian-binary\n -rw-r--r--   0        0        0    31376 2023-12-23 14:20:41.000000 control.tar.xz\n--rw-r--r--   0        0        0 42996544 2023-12-23 14:20:41.000000 data.tar.xz\n+-rw-r--r--   0        0        0 42996548 2023-12-23 14:20:41.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "./usr/share/doc/openms/tutorials/OpenMS_tutorial.pdf.gz", "source2": "./usr/share/doc/openms/tutorials/OpenMS_tutorial.pdf.gz", "unified_diff": null, "details": [{"source1": "OpenMS_tutorial.pdf", "source2": "OpenMS_tutorial.pdf", "unified_diff": null, "details": [{"source1": "pdftotext {} -", "source2": "pdftotext {} -", "unified_diff": "@@ -1,9 +1,9 @@\n OpenMS Tutorial\n-Version: 2.6.0-pre-exported-20231223\n+Version: 2.6.0-pre-exported-20231224\n \n \fContents\n 1\n \n OpenMS Developer Quickstart Guide\n 1\n Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n"}]}]}, {"source1": "./usr/share/doc/openms/tutorials/TOPP_tutorial.pdf.gz", "source2": "./usr/share/doc/openms/tutorials/TOPP_tutorial.pdf.gz", "unified_diff": null, "details": [{"source1": "TOPP_tutorial.pdf", "source2": "TOPP_tutorial.pdf", "unified_diff": null, "details": [{"source1": "pdftotext {} -", "source2": "pdftotext {} -", "unified_diff": "@@ -1,9 +1,9 @@\n TOPP and TOPPView Tutorial\n-Version: 2.6.0-pre-exported-20231223\n+Version: 2.6.0-pre-exported-20231224\n \n \fContents\n 1\n \n Concepts\n \n 4\n"}]}]}]}]}]}, {"source1": "topp_2.6.0+cleaned1-4_arm64.deb", "source2": "topp_2.6.0+cleaned1-4_arm64.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2023-12-23 14:20:41.000000 debian-binary\n -rw-r--r--   0        0        0     6276 2023-12-23 14:20:41.000000 control.tar.xz\n--rw-r--r--   0        0        0  2835556 2023-12-23 14:20:41.000000 data.tar.xz\n+-rw-r--r--   0        0        0  2835520 2023-12-23 14:20:41.000000 data.tar.xz\n"}, {"source1": "control.tar.xz", "source2": "control.tar.xz", "unified_diff": null, "details": [{"source1": "control.tar", "source2": "control.tar", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "unified_diff": null, "details": [{"source1": "./md5sums", "source2": "./md5sums", "comments": ["Files differ"], "unified_diff": null}]}]}]}, {"source1": "data.tar.xz", "source2": "data.tar.xz", "unified_diff": null, "details": [{"source1": "data.tar", "source2": "data.tar", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -190,15 +190,15 @@\n -rw-r--r--   0 root         (0) root         (0)    38745 2020-10-01 13:46:20.000000 ./usr/share/doc/topp/changelog.gz\n -rw-r--r--   0 root         (0) root         (0)    31665 2023-12-23 08:54:50.000000 ./usr/share/doc/topp/copyright\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/lintian/\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/lintian/overrides/\n -rw-r--r--   0 root         (0) root         (0)       26 2023-12-23 08:47:22.000000 ./usr/share/lintian/overrides/topp\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/man/\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/man/man1/\n--rw-r--r--   0 root         (0) root         (0)     5917 2023-12-23 14:20:41.000000 ./usr/share/man/man1/topp.1.gz\n+-rw-r--r--   0 root         (0) root         (0)     5940 2023-12-23 14:20:41.000000 ./usr/share/man/man1/topp.1.gz\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/metainfo/\n -rw-r--r--   0 root         (0) root         (0)     1413 2020-10-01 13:46:20.000000 ./usr/share/metainfo/TOPPAS.appdata.xml\n -rw-r--r--   0 root         (0) root         (0)     1709 2020-10-01 13:46:20.000000 ./usr/share/metainfo/TOPPView.appdata.xml\n drwxr-xr-x   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/pixmaps/\n -rw-r--r--   0 root         (0) root         (0)     5833 2023-12-23 14:20:41.000000 ./usr/share/pixmaps/TOPPAS.xpm\n -rw-r--r--   0 root         (0) root         (0)     5098 2023-12-23 14:20:41.000000 ./usr/share/pixmaps/TOPPView.xpm\n lrwxrwxrwx   0 root         (0) root         (0)        0 2023-12-23 14:20:41.000000 ./usr/share/man/man1/AccurateMassSearch.1.gz -> topp.1.gz\n"}, {"source1": "./usr/share/man/man1/topp.1.gz", "source2": "./usr/share/man/man1/topp.1.gz", "unified_diff": null, "details": [{"source1": "topp.1", "source2": "topp.1", "unified_diff": "@@ -16,371 +16,371 @@\n Initiative (PSI) formats for MS data and supports easy integration of\n tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS\n via the TOPPtools concept and a unified parameter handling.\n \n .SH \"AVAILABLE MODULES\"\n \n \n-\\fBAccurateMassSearch\\fR -- Match MS signals to molecules from a database by mass.\n+\\\\fBAccurateMassSearch\\\\fR -- Match MS signals to molecules from a database by mass.\n \n-\\fBAssayGeneratorMetabo\\fR -- Assay library generation from DDA data (Metabolomics).\n+\\\\fBAssayGeneratorMetabo\\\\fR -- Assay library generation from DDA data (Metabolomics).\n \n-\\fBBaselineFilter\\fR -- Removes the baseline from profile spectra using a top-hat filter.\n+\\\\fBBaselineFilter\\\\fR -- Removes the baseline from profile spectra using a top-hat filter.\n \n-\\fBCVInspector\\fR -- A tool for visualization and validation of PSI mapping and CV files.\n+\\\\fBCVInspector\\\\fR -- A tool for visualization and validation of PSI mapping and CV files.\n \n-\\fBClusterMassTraces\\fR -- Creates pseudo spectra.\n+\\\\fBClusterMassTraces\\\\fR -- Creates pseudo spectra.\n \n-\\fBClusterMassTracesByPrecursor\\fR -- Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.\n+\\\\fBClusterMassTracesByPrecursor\\\\fR -- Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.\n \n-\\fBCometAdapter\\fR -- Annotates MS/MS spectra using Comet.\n+\\\\fBCometAdapter\\\\fR -- Annotates MS/MS spectra using Comet.\n \n-\\fBCompNovo\\fR -- Performs a de novo peptide identification using the CompNovo engine.\n+\\\\fBCompNovo\\\\fR -- Performs a de novo peptide identification using the CompNovo engine.\n \n-\\fBCompNovoCID\\fR -- Performs a de novo peptide identification using the CompNovo engine.\n+\\\\fBCompNovoCID\\\\fR -- Performs a de novo peptide identification using the CompNovo engine.\n \n-\\fBConsensusID\\fR -- Computes a consensus of peptide identifications of several identification engines.\n+\\\\fBConsensusID\\\\fR -- Computes a consensus of peptide identifications of several identification engines.\n \n-\\fBConsensusMapNormalizer\\fR -- Normalizes maps of one consensusXML file.\n+\\\\fBConsensusMapNormalizer\\\\fR -- Normalizes maps of one consensusXML file.\n \n-\\fBCruxAdapter\\fR -- Identifies MS/MS spectra using Crux.\n+\\\\fBCruxAdapter\\\\fR -- Identifies MS/MS spectra using Crux.\n \n-\\fBDTAExtractor\\fR -- Extracts spectra of an MS run file to several files in DTA format.\n+\\\\fBDTAExtractor\\\\fR -- Extracts spectra of an MS run file to several files in DTA format.\n \n-\\fBDatabaseFilter\\fR -- Filters a protein database (FASTA format) based on identified proteins.\n+\\\\fBDatabaseFilter\\\\fR -- Filters a protein database (FASTA format) based on identified proteins.\n \n-\\fBDatabaseSuitability\\fR -- Computes a suitability score for a database which was used for a peptide identification search. Also reports the quality of LC-MS spectra.\n+\\\\fBDatabaseSuitability\\\\fR -- Computes a suitability score for a database which was used for a peptide identification search. Also reports the quality of LC-MS spectra.\n \n-\\fBDeMeanderize\\fR -- Orders the spectra of MALDI spotting plates correctly.\n+\\\\fBDeMeanderize\\\\fR -- Orders the spectra of MALDI spotting plates correctly.\n \n-\\fBDecharger\\fR -- Decharges and merges different feature charge variants of the same peptide.\n+\\\\fBDecharger\\\\fR -- Decharges and merges different feature charge variants of the same peptide.\n \n-\\fBDecoyDatabase\\fR -- Create decoy sequence database from forward sequence database.\n+\\\\fBDecoyDatabase\\\\fR -- Create decoy sequence database from forward sequence database.\n \n-\\fBDigestor\\fR -- Digests a protein database in-silico.\n+\\\\fBDigestor\\\\fR -- Digests a protein database in-silico.\n \n-\\fBDigestorMotif\\fR -- digests a protein database in-silico.\n+\\\\fBDigestorMotif\\\\fR -- digests a protein database in-silico.\n \n-\\fBEICExtractor\\fR -- Extracts intensities from dedicates positions in a LC/MS map.\n+\\\\fBEICExtractor\\\\fR -- Extracts intensities from dedicates positions in a LC/MS map.\n \n-\\fBERPairFinder\\fR -- Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.\n+\\\\fBERPairFinder\\\\fR -- Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.\n \n-\\fBEpifany\\fR -- Runs a Bayesian protein inference.\n+\\\\fBEpifany\\\\fR -- Runs a Bayesian protein inference.\n \n-\\fBExecutePipeline\\fR -- Executes workflows created by TOPPAS.\n+\\\\fBExecutePipeline\\\\fR -- Executes workflows created by TOPPAS.\n \n-\\fBExternalCalibration\\fR -- Applies an external mass recalibration.\n+\\\\fBExternalCalibration\\\\fR -- Applies an external mass recalibration.\n \n-\\fBFFEval\\fR -- Evaluation tool for feature detection algorithms.\n+\\\\fBFFEval\\\\fR -- Evaluation tool for feature detection algorithms.\n \n-\\fBFalseDiscoveryRate\\fR -- Estimates the false discovery rate on peptide and protein level using decoy searches.\n+\\\\fBFalseDiscoveryRate\\\\fR -- Estimates the false discovery rate on peptide and protein level using decoy searches.\n \n-\\fBFeatureFinderCentroided\\fR -- Detects two-dimensional features in LC-MS data.\n+\\\\fBFeatureFinderCentroided\\\\fR -- Detects two-dimensional features in LC-MS data.\n \n-\\fBFeatureFinderIdentification\\fR -- Detects features in MS1 data based on peptide identifications.\n+\\\\fBFeatureFinderIdentification\\\\fR -- Detects features in MS1 data based on peptide identifications.\n \n-\\fBFeatureFinderIsotopeWavelet\\fR -- Detects two-dimensional features in LC-MS data.\n+\\\\fBFeatureFinderIsotopeWavelet\\\\fR -- Detects two-dimensional features in LC-MS data.\n \n-\\fBFeatureFinderMRM\\fR -- Detects two-dimensional features in LC-MS data.\n+\\\\fBFeatureFinderMRM\\\\fR -- Detects two-dimensional features in LC-MS data.\n \n-\\fBFeatureFinderMetabo\\fR -- Assembles metabolite features from centroided (LC-)MS data using the mass trace approach.\n+\\\\fBFeatureFinderMetabo\\\\fR -- Assembles metabolite features from centroided (LC-)MS data using the mass trace approach.\n \n-\\fBFeatureFinderMetaboIdent\\fR -- Detects features in MS1 data based on metabolite identifications.\n+\\\\fBFeatureFinderMetaboIdent\\\\fR -- Detects features in MS1 data based on metabolite identifications.\n \n-\\fBFeatureFinderMultiplex\\fR -- Determination of peak ratios in LC-MS data.\n+\\\\fBFeatureFinderMultiplex\\\\fR -- Determination of peak ratios in LC-MS data.\n \n-\\fBFeatureFinderSuperHirn\\fR -- Finds mass spectrometric features in mass spectra.\n+\\\\fBFeatureFinderSuperHirn\\\\fR -- Finds mass spectrometric features in mass spectra.\n \n-\\fBFeatureLinkerLabeled\\fR -- Groups corresponding isotope-labeled features in a feature map.\n+\\\\fBFeatureLinkerLabeled\\\\fR -- Groups corresponding isotope-labeled features in a feature map.\n \n-\\fBFeatureLinkerUnlabeled\\fR -- Groups corresponding features from multiple maps.\n+\\\\fBFeatureLinkerUnlabeled\\\\fR -- Groups corresponding features from multiple maps.\n \n-\\fBFeatureLinkerUnlabeledKD\\fR -- Groups corresponding features from multiple maps.\n+\\\\fBFeatureLinkerUnlabeledKD\\\\fR -- Groups corresponding features from multiple maps.\n \n-\\fBFeatureLinkerUnlabeledQT\\fR -- Groups corresponding features from multiple maps.\n+\\\\fBFeatureLinkerUnlabeledQT\\\\fR -- Groups corresponding features from multiple maps.\n \n-\\fBFidoAdapter\\fR -- Runs the protein inference engine Fido.\n+\\\\fBFidoAdapter\\\\fR -- Runs the protein inference engine Fido.\n \n-\\fBFileConverter\\fR -- Converts between different MS file formats.\n+\\\\fBFileConverter\\\\fR -- Converts between different MS file formats.\n \n-\\fBFileFilter\\fR -- Extracts or manipulates portions of data from peak, feature or consensus-feature files.\n+\\\\fBFileFilter\\\\fR -- Extracts or manipulates portions of data from peak, feature or consensus-feature files.\n \n-\\fBFileInfo\\fR -- Shows basic information about the file, such as data ranges and file type.\n+\\\\fBFileInfo\\\\fR -- Shows basic information about the file, such as data ranges and file type.\n \n-\\fBFileMerger\\fR -- Merges several MS files into one file.\n+\\\\fBFileMerger\\\\fR -- Merges several MS files into one file.\n \n-\\fBFuzzyDiff\\fR -- Compares two files, tolerating numeric differences.\n+\\\\fBFuzzyDiff\\\\fR -- Compares two files, tolerating numeric differences.\n \n-\\fBGNPSExport\\fR -- Tool to export consensus features into MGF format.\n+\\\\fBGNPSExport\\\\fR -- Tool to export consensus features into MGF format.\n \n-\\fBGenericWrapper\\fR -- Allows the generic wrapping of external tools.\n+\\\\fBGenericWrapper\\\\fR -- Allows the generic wrapping of external tools.\n \n-\\fBHighResPrecursorMassCorrector\\fR -- Corrects the precursor mass and charge determined by the instrument software.\n+\\\\fBHighResPrecursorMassCorrector\\\\fR -- Corrects the precursor mass and charge determined by the instrument software.\n \n-\\fBIDConflictResolver\\fR -- Resolves ambiguous annotations of features with peptide identifications.\n+\\\\fBIDConflictResolver\\\\fR -- Resolves ambiguous annotations of features with peptide identifications.\n \n-\\fBIDDecoyProbability\\fR -- Estimates peptide probabilities using a decoy search strategy.\n+\\\\fBIDDecoyProbability\\\\fR -- Estimates peptide probabilities using a decoy search strategy.\n \n-\\fBIDExtractor\\fR -- Extracts 'n' peptides randomly or best 'n' from idXML files.\n+\\\\fBIDExtractor\\\\fR -- Extracts 'n' peptides randomly or best 'n' from idXML files.\n \n-\\fBIDFileConverter\\fR -- Converts identification engine file formats.\n+\\\\fBIDFileConverter\\\\fR -- Converts identification engine file formats.\n \n-\\fBIDFilter\\fR -- Filters results from protein or peptide identification engines based on different criteria.\n+\\\\fBIDFilter\\\\fR -- Filters results from protein or peptide identification engines based on different criteria.\n \n-\\fBIDMapper\\fR -- Assigns protein/peptide identifications to features or consensus features.\n+\\\\fBIDMapper\\\\fR -- Assigns protein/peptide identifications to features or consensus features.\n \n-\\fBIDMassAccuracy\\fR -- Calculates a distribution of the mass error from given mass spectra and IDs.\n+\\\\fBIDMassAccuracy\\\\fR -- Calculates a distribution of the mass error from given mass spectra and IDs.\n \n-\\fBIDMerger\\fR -- Merges several protein/peptide identification files into one file.\n+\\\\fBIDMerger\\\\fR -- Merges several protein/peptide identification files into one file.\n \n-\\fBIDPosteriorErrorProbability\\fR -- Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.\n+\\\\fBIDPosteriorErrorProbability\\\\fR -- Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.\n \n-\\fBIDRTCalibration\\fR -- Can be used to calibrate RTs of peptide hits linearly to standards.\n+\\\\fBIDRTCalibration\\\\fR -- Can be used to calibrate RTs of peptide hits linearly to standards.\n \n-\\fBIDRipper\\fR -- Split protein/peptide identification file into several files according to annotated file origin.\n+\\\\fBIDRipper\\\\fR -- Split protein/peptide identification file into several files according to annotated file origin.\n \n-\\fBIDScoreSwitcher\\fR -- Switches between different scores of peptide or protein hits in identification data.\n+\\\\fBIDScoreSwitcher\\\\fR -- Switches between different scores of peptide or protein hits in identification data.\n \n-\\fBIDSplitter\\fR -- Splits protein/peptide identifications off of annotated data files.\n+\\\\fBIDSplitter\\\\fR -- Splits protein/peptide identifications off of annotated data files.\n \n-\\fBINIFileEditor\\fR -- An editor for OpenMS configuration files.\n+\\\\fBINIFileEditor\\\\fR -- An editor for OpenMS configuration files.\n \n-\\fBINIUpdater\\fR -- Update INI and TOPPAS files to new OpenMS version.\n+\\\\fBINIUpdater\\\\fR -- Update INI and TOPPAS files to new OpenMS version.\n \n-\\fBImageCreator\\fR -- Transforms an LC-MS map into an image.\n+\\\\fBImageCreator\\\\fR -- Transforms an LC-MS map into an image.\n \n-\\fBInclusionExclusionListCreator\\fR -- Creates inclusion and/or exclusion lists.\n+\\\\fBInclusionExclusionListCreator\\\\fR -- Creates inclusion and/or exclusion lists.\n \n-\\fBInspectAdapter\\fR -- Annotates MS/MS spectra using Inspect.\n+\\\\fBInspectAdapter\\\\fR -- Annotates MS/MS spectra using Inspect.\n \n-\\fBInternalCalibration\\fR -- Applies an internal mass recalibration.\n+\\\\fBInternalCalibration\\\\fR -- Applies an internal mass recalibration.\n \n-\\fBIsobaricAnalyzer\\fR -- Calculates isobaric quantitative values for peptides.\n+\\\\fBIsobaricAnalyzer\\\\fR -- Calculates isobaric quantitative values for peptides.\n \n-\\fBLabeledEval\\fR -- Evaluation tool for isotope-labeled quantitation experiments.\n+\\\\fBLabeledEval\\\\fR -- Evaluation tool for isotope-labeled quantitation experiments.\n \n-\\fBLuciphorAdapter\\fR -- Modification site localisation using LuciPHOr2.\n+\\\\fBLuciphorAdapter\\\\fR -- Modification site localisation using LuciPHOr2.\n \n-\\fBMRMMapper\\fR -- MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).\n+\\\\fBMRMMapper\\\\fR -- MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).\n \n-\\fBMRMPairFinder\\fR -- Util which can be used to evaluate labeled pair ratios on MRM features.\n+\\\\fBMRMPairFinder\\\\fR -- Util which can be used to evaluate labeled pair ratios on MRM features.\n \n-\\fBMRMTransitionGroupPicker\\fR -- Picks peaks in SRM/MRM chromatograms.\n+\\\\fBMRMTransitionGroupPicker\\\\fR -- Picks peaks in SRM/MRM chromatograms.\n \n-\\fBMSFraggerAdapter\\fR -- Peptide Identification with MSFragger.\n+\\\\fBMSFraggerAdapter\\\\fR -- Peptide Identification with MSFragger.\n \n-\\fBMSGFPlusAdapter\\fR -- MS/MS database search using MS-GF+.\n+\\\\fBMSGFPlusAdapter\\\\fR -- MS/MS database search using MS-GF+.\n \n-\\fBMSSimulator\\fR -- A highly configurable simulator for mass spectrometry experiments.\n+\\\\fBMSSimulator\\\\fR -- A highly configurable simulator for mass spectrometry experiments.\n \n-\\fBMSstatsConverter\\fR -- Converter to input for MSstats.\n+\\\\fBMSstatsConverter\\\\fR -- Converter to input for MSstats.\n \n-\\fBMaRaClusterAdapter\\fR -- Facilitate input to MaRaCluster and reintegrate.\n+\\\\fBMaRaClusterAdapter\\\\fR -- Facilitate input to MaRaCluster and reintegrate.\n \n-\\fBMapAlignerIdentification\\fR -- Corrects retention time distortions between maps based on common peptide identifications.\n+\\\\fBMapAlignerIdentification\\\\fR -- Corrects retention time distortions between maps based on common peptide identifications.\n \n-\\fBMapAlignerPoseClustering\\fR -- Corrects retention time distortions between maps using a pose clustering approach.\n+\\\\fBMapAlignerPoseClustering\\\\fR -- Corrects retention time distortions between maps using a pose clustering approach.\n \n-\\fBMapAlignerSpectrum\\fR -- Corrects retention time distortions between maps by spectrum alignment.\n+\\\\fBMapAlignerSpectrum\\\\fR -- Corrects retention time distortions between maps by spectrum alignment.\n \n-\\fBMapAlignerTreeGuided\\fR -- Tree guided correction of retention time distortions between maps.\n+\\\\fBMapAlignerTreeGuided\\\\fR -- Tree guided correction of retention time distortions between maps.\n \n-\\fBMapNormalizer\\fR -- Normalizes peak intensities in an MS run.\n+\\\\fBMapNormalizer\\\\fR -- Normalizes peak intensities in an MS run.\n \n-\\fBMapRTTransformer\\fR -- Applies retention time transformations to maps.\n+\\\\fBMapRTTransformer\\\\fR -- Applies retention time transformations to maps.\n \n-\\fBMapStatistics\\fR -- Extract extended statistics on the features of a map for quality control.\n+\\\\fBMapStatistics\\\\fR -- Extract extended statistics on the features of a map for quality control.\n \n-\\fBMascotAdapter\\fR -- Annotates MS/MS spectra using Mascot.\n+\\\\fBMascotAdapter\\\\fR -- Annotates MS/MS spectra using Mascot.\n \n-\\fBMascotAdapterOnline\\fR -- Annotates MS/MS spectra using Mascot.\n+\\\\fBMascotAdapterOnline\\\\fR -- Annotates MS/MS spectra using Mascot.\n \n-\\fBMassCalculator\\fR -- Calculates masses and mass-to-charge ratios of peptide sequences.\n+\\\\fBMassCalculator\\\\fR -- Calculates masses and mass-to-charge ratios of peptide sequences.\n \n-\\fBMassTraceExtractor\\fR -- Detects mass traces in centroided LC-MS data.\n+\\\\fBMassTraceExtractor\\\\fR -- Detects mass traces in centroided LC-MS data.\n \n-\\fBMetaProSIP\\fR -- Performs proteinSIP on peptide features for elemental flux analysis.\n+\\\\fBMetaProSIP\\\\fR -- Performs proteinSIP on peptide features for elemental flux analysis.\n \n-\\fBMetaboliteAdductDecharger\\fR -- Decharges and merges different feature charge variants of the same metabolite.\n+\\\\fBMetaboliteAdductDecharger\\\\fR -- Decharges and merges different feature charge variants of the same metabolite.\n \n-\\fBMetaboliteSpectralMatcher\\fR -- Perform a spectral library search.\n+\\\\fBMetaboliteSpectralMatcher\\\\fR -- Perform a spectral library search.\n \n-\\fBMultiplexResolver\\fR -- Completes peptide multiplets and resolves conflicts within them.\n+\\\\fBMultiplexResolver\\\\fR -- Completes peptide multiplets and resolves conflicts within them.\n \n-\\fBMyriMatchAdapter\\fR -- Annotates MS/MS spectra using MyriMatch.\n+\\\\fBMyriMatchAdapter\\\\fR -- Annotates MS/MS spectra using MyriMatch.\n \n-\\fBMzMLSplitter\\fR -- Splits an mzML file into multiple parts.\n+\\\\fBMzMLSplitter\\\\fR -- Splits an mzML file into multiple parts.\n \n-\\fBMzTabExporter\\fR -- Exports various XML formats to an mzTab file.\n+\\\\fBMzTabExporter\\\\fR -- Exports various XML formats to an mzTab file.\n \n-\\fBNoiseFilterGaussian\\fR -- Removes noise from profile spectra by using Gaussian filter (on uniform as well as non-uniform data).\n+\\\\fBNoiseFilterGaussian\\\\fR -- Removes noise from profile spectra by using Gaussian filter (on uniform as well as non-uniform data).\n \n-\\fBNoiseFilterSGolay\\fR -- Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.\n+\\\\fBNoiseFilterSGolay\\\\fR -- Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.\n \n-\\fBNovorAdapter\\fR -- Template for Tool creation.\n+\\\\fBNovorAdapter\\\\fR -- Template for Tool creation.\n \n-\\fBNucleicAcidSearchEngine\\fR -- Annotate nucleic acid identifications to MS/MS spectra.\n+\\\\fBNucleicAcidSearchEngine\\\\fR -- Annotate nucleic acid identifications to MS/MS spectra.\n \n-\\fBOMSSAAdapter\\fR -- Annotates MS/MS spectra using OMSSA.\n+\\\\fBOMSSAAdapter\\\\fR -- Annotates MS/MS spectra using OMSSA.\n \n \n \n-\\fBOpenPepXL\\fR -- Tool for protein-protein cross-linking identification using labeled linkers.\n+\\\\fBOpenPepXL\\\\fR -- Tool for protein-protein cross-linking identification using labeled linkers.\n \n-\\fBOpenPepXLLF\\fR -- Tool for protein-protein cross linking with label-free linkers.\n+\\\\fBOpenPepXLLF\\\\fR -- Tool for protein-protein cross linking with label-free linkers.\n \n-\\fBOpenSwathAnalyzer\\fR -- Picks peaks and finds features in an SWATH-MS or SRM experiment.\n+\\\\fBOpenSwathAnalyzer\\\\fR -- Picks peaks and finds features in an SWATH-MS or SRM experiment.\n \n-\\fBOpenSwathAssayGenerator\\fR -- Generates assays according to different models for a specific TraML.\n+\\\\fBOpenSwathAssayGenerator\\\\fR -- Generates assays according to different models for a specific TraML.\n \n-\\fBOpenSwathChromatogramExtractor\\fR -- Extract chromatograms (XIC) from a MS2 map file.\n+\\\\fBOpenSwathChromatogramExtractor\\\\fR -- Extract chromatograms (XIC) from a MS2 map file.\n \n-\\fBOpenSwathConfidenceScoring\\fR -- Compute confidence scores for OpenSwath results.\n+\\\\fBOpenSwathConfidenceScoring\\\\fR -- Compute confidence scores for OpenSwath results.\n \n-\\fBOpenSwathDIAPreScoring\\fR -- Scoring spectra using the DIA scores.\n+\\\\fBOpenSwathDIAPreScoring\\\\fR -- Scoring spectra using the DIA scores.\n \n-\\fBOpenSwathDecoyGenerator\\fR -- Generates decoys according to different models for a specific TraML.\n+\\\\fBOpenSwathDecoyGenerator\\\\fR -- Generates decoys according to different models for a specific TraML.\n \n-\\fBOpenSwathFeatureXMLToTSV\\fR -- Converts a featureXML to a mProphet tsv.\n+\\\\fBOpenSwathFeatureXMLToTSV\\\\fR -- Converts a featureXML to a mProphet tsv.\n \n-\\fBOpenSwathFileSplitter\\fR -- Splits SWATH files into n files, each containing one window.\n+\\\\fBOpenSwathFileSplitter\\\\fR -- Splits SWATH files into n files, each containing one window.\n \n-\\fBOpenSwathMzMLFileCacher\\fR -- This tool caches the spectra and chromatogram data of an mzML to disk.\n+\\\\fBOpenSwathMzMLFileCacher\\\\fR -- This tool caches the spectra and chromatogram data of an mzML to disk.\n \n-\\fBOpenSwathRTNormalizer\\fR -- This tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transform the RT space into the normalized space.\n+\\\\fBOpenSwathRTNormalizer\\\\fR -- This tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transform the RT space into the normalized space.\n \n-\\fBOpenSwathRewriteToFeatureXML\\fR -- Combines featureXML and mProphet tsv to FDR filtered featureXML.\n+\\\\fBOpenSwathRewriteToFeatureXML\\\\fR -- Combines featureXML and mProphet tsv to FDR filtered featureXML.\n \n-\\fBOpenSwathWorkflow\\fR -- Complete workflow to run OpenSWATH.\n+\\\\fBOpenSwathWorkflow\\\\fR -- Complete workflow to run OpenSWATH.\n \n-\\fBPSMFeatureExtractor\\fR -- Computes extra features for each input PSM.\n+\\\\fBPSMFeatureExtractor\\\\fR -- Computes extra features for each input PSM.\n \n-\\fBPTModel\\fR -- Trains a model for the prediction of proteotypic peptides from a training set.\n+\\\\fBPTModel\\\\fR -- Trains a model for the prediction of proteotypic peptides from a training set.\n \n-\\fBPTPredict\\fR -- predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel.\n+\\\\fBPTPredict\\\\fR -- predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel.\n \n-\\fBPeakPickerHiRes\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n+\\\\fBPeakPickerHiRes\\\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n \n-\\fBPeakPickerIterative\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n+\\\\fBPeakPickerIterative\\\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n \n-\\fBPeakPickerWavelet\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n+\\\\fBPeakPickerWavelet\\\\fR -- Finds mass spectrometric peaks in profile mass spectra.\n \n-\\fBPepNovoAdapter\\fR -- Adapter to PepNovo supporting all PepNovo command line parameters. The results are converted from the PepNovo text outfile format into the idXML format.\n+\\\\fBPepNovoAdapter\\\\fR -- Adapter to PepNovo supporting all PepNovo command line parameters. The results are converted from the PepNovo text outfile format into the idXML format.\n \n-\\fBPeptideIndexer\\fR -- Refreshes the protein references for all peptide hits.\n+\\\\fBPeptideIndexer\\\\fR -- Refreshes the protein references for all peptide hits.\n \n-\\fBPercolatorAdapter\\fR -- Facilitate input to Percolator and reintegrate.\n+\\\\fBPercolatorAdapter\\\\fR -- Facilitate input to Percolator and reintegrate.\n \n-\\fBPhosphoScoring\\fR -- Scores potential phosphorylation sites in order to localize the most probable sites.\n+\\\\fBPhosphoScoring\\\\fR -- Scores potential phosphorylation sites in order to localize the most probable sites.\n \n-\\fBPrecursorIonSelector\\fR -- PrecursorIonSelector.\n+\\\\fBPrecursorIonSelector\\\\fR -- PrecursorIonSelector.\n \n-\\fBPrecursorMassCorrector\\fR -- Corrects the precursor entries of MS/MS spectra, by using MS1 information.\n+\\\\fBPrecursorMassCorrector\\\\fR -- Corrects the precursor entries of MS/MS spectra, by using MS1 information.\n \n-\\fBProteinInference\\fR -- Protein inference based on an aggregation of the scores of the identified peptides.\n+\\\\fBProteinInference\\\\fR -- Protein inference based on an aggregation of the scores of the identified peptides.\n \n-\\fBProteinQuantifier\\fR -- Compute peptide and protein abundances.\n+\\\\fBProteinQuantifier\\\\fR -- Compute peptide and protein abundances.\n \n-\\fBProteinResolver\\fR -- protein inference.\n+\\\\fBProteinResolver\\\\fR -- protein inference.\n \n-\\fBProteomicsLFQ\\fR -- A standard proteomics LFQ pipeline.\n+\\\\fBProteomicsLFQ\\\\fR -- A standard proteomics LFQ pipeline.\n \n-\\fBQCCalculator\\fR -- Calculates basic quality parameters from MS experiments and subsequent analysis data as identification or feature detection.\n+\\\\fBQCCalculator\\\\fR -- Calculates basic quality parameters from MS experiments and subsequent analysis data as identification or feature detection.\n \n-\\fBQCEmbedder\\fR -- Attaches a table or an image to a given qc parameter.\n+\\\\fBQCEmbedder\\\\fR -- Attaches a table or an image to a given qc parameter.\n \n-\\fBQCExporter\\fR -- Will extract several qp from several run/sets in a tabular format.\n+\\\\fBQCExporter\\\\fR -- Will extract several qp from several run/sets in a tabular format.\n \n-\\fBQCExtractor\\fR -- Extracts a table attachment to a given qc parameter.\n+\\\\fBQCExtractor\\\\fR -- Extracts a table attachment to a given qc parameter.\n \n-\\fBQCImporter\\fR -- Imports tables with quality control parameters into qcml files.\n+\\\\fBQCImporter\\\\fR -- Imports tables with quality control parameters into qcml files.\n \n-\\fBQCMerger\\fR -- Merges two qcml files together.\n+\\\\fBQCMerger\\\\fR -- Merges two qcml files together.\n \n-\\fBQCShrinker\\fR -- This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.\n+\\\\fBQCShrinker\\\\fR -- This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.\n \n-\\fBQualityControl\\fR -- Computes various QC metrics from many possible input files (only the consensusXML is required). The more optional files you provide, the more metrics you get.\n+\\\\fBQualityControl\\\\fR -- Computes various QC metrics from many possible input files (only the consensusXML is required). The more optional files you provide, the more metrics you get.\n \n-\\fBRNADigestor\\fR -- Digests an RNA sequence database in-silico.\n+\\\\fBRNADigestor\\\\fR -- Digests an RNA sequence database in-silico.\n \n-\\fBRNAMassCalculator\\fR -- Calculates masses, mass-to-charge ratios and sum formulas of RNA sequences.\n+\\\\fBRNAMassCalculator\\\\fR -- Calculates masses, mass-to-charge ratios and sum formulas of RNA sequences.\n \n-\\fBRNPxlSearch\\fR -- Annotate RNA/DNA-peptide cross-links in MS/MS spectra.\n+\\\\fBRNPxlSearch\\\\fR -- Annotate RNA/DNA-peptide cross-links in MS/MS spectra.\n \n-\\fBRNPxlXICFilter\\fR -- Remove MS2 spectra from treatment based on the fold change between control and treatment.\n+\\\\fBRNPxlXICFilter\\\\fR -- Remove MS2 spectra from treatment based on the fold change between control and treatment.\n \n-\\fBRTEvaluation\\fR -- Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.\n+\\\\fBRTEvaluation\\\\fR -- Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.\n \n-\\fBRTModel\\fR -- Trains a model for the retention time prediction of peptides from a training set.\n+\\\\fBRTModel\\\\fR -- Trains a model for the retention time prediction of peptides from a training set.\n \n-\\fBRTPredict\\fR -- Predicts retention times for peptides using a model trained by RTModel.\n+\\\\fBRTPredict\\\\fR -- Predicts retention times for peptides using a model trained by RTModel.\n \n-\\fBResampler\\fR -- Transforms an LC/MS map into a resampled map or a PNG image.\n+\\\\fBResampler\\\\fR -- Transforms an LC/MS map into a resampled map or a PNG image.\n \n-\\fBSeedListGenerator\\fR -- Generates seed lists for feature detection.\n+\\\\fBSeedListGenerator\\\\fR -- Generates seed lists for feature detection.\n \n-\\fBSemanticValidator\\fR -- SemanticValidator for semantically validating certain XML files.\n+\\\\fBSemanticValidator\\\\fR -- SemanticValidator for semantically validating certain XML files.\n \n-\\fBSequenceCoverageCalculator\\fR -- Prints information about idXML files.\n+\\\\fBSequenceCoverageCalculator\\\\fR -- Prints information about idXML files.\n \n-\\fBSimpleSearchEngine\\fR -- Annotates MS/MS spectra using SimpleSearchEngine.\n+\\\\fBSimpleSearchEngine\\\\fR -- Annotates MS/MS spectra using SimpleSearchEngine.\n \n-\\fBSiriusAdapter\\fR -- Tool for metabolite identification using single and tandem mass spectrometry.\n+\\\\fBSiriusAdapter\\\\fR -- Tool for metabolite identification using single and tandem mass spectrometry.\n \n-\\fBSpecLibCreator\\fR -- Creates an MSP formatted spectral library.\n+\\\\fBSpecLibCreator\\\\fR -- Creates an MSP formatted spectral library.\n \n-\\fBSpecLibSearcher\\fR -- Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.\n+\\\\fBSpecLibSearcher\\\\fR -- Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.\n \n-\\fBSpectraFilterBernNorm\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterBernNorm\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterMarkerMower\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterMarkerMower\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterNLargest\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterNLargest\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterNormalizer\\fR -- Normalizes intensity of peak spectra.\n+\\\\fBSpectraFilterNormalizer\\\\fR -- Normalizes intensity of peak spectra.\n \n-\\fBSpectraFilterParentPeakMower\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterParentPeakMower\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterScaler\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterScaler\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterSqrtMower\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterSqrtMower\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterThresholdMower\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterThresholdMower\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraFilterWindowMower\\fR -- Applies thresholdfilter to peak spectra.\n+\\\\fBSpectraFilterWindowMower\\\\fR -- Applies thresholdfilter to peak spectra.\n \n-\\fBSpectraMerger\\fR -- Merges spectra (each MS level separately), increasing S/N ratios.\n+\\\\fBSpectraMerger\\\\fR -- Merges spectra (each MS level separately), increasing S/N ratios.\n \n-\\fBSpectraSTSearchAdapter\\fR -- Interface to the SEARCH Mode of the SpectraST executable.\n+\\\\fBSpectraSTSearchAdapter\\\\fR -- Interface to the SEARCH Mode of the SpectraST executable.\n \n-\\fBStaticModification\\fR -- Applies a set of modifications to all PeptideIDs in an idXML file.\n+\\\\fBStaticModification\\\\fR -- Applies a set of modifications to all PeptideIDs in an idXML file.\n \n-\\fBSvmTheoreticalSpectrumGeneratorTrainer\\fR -- Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator.\n+\\\\fBSvmTheoreticalSpectrumGeneratorTrainer\\\\fR -- Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator.\n \n-\\fBSwathWizard\\fR -- An assistant for Swath-Analysis.\n+\\\\fBSwathWizard\\\\fR -- An assistant for Swath-Analysis.\n \n-\\fBTICCalculator\\fR -- Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).\n+\\\\fBTICCalculator\\\\fR -- Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).\n \n-\\fBTOFCalibration\\fR -- Applies time of flight calibration.\n+\\\\fBTOFCalibration\\\\fR -- Applies time of flight calibration.\n \n-\\fBTOPPAS\\fR -- An assistant for GUI-driven TOPP workflow design.\n+\\\\fBTOPPAS\\\\fR -- An assistant for GUI-driven TOPP workflow design.\n \n-\\fBTOPPView\\fR -- A viewer for mass spectrometry data.\n+\\\\fBTOPPView\\\\fR -- A viewer for mass spectrometry data.\n \n-\\fBTargetedFileConverter\\fR -- Converts different transition files for targeted proteomics / metabolomics analysis.\n+\\\\fBTargetedFileConverter\\\\fR -- Converts different transition files for targeted proteomics / metabolomics analysis.\n \n-\\fBTextExporter\\fR -- Exports various XML formats to a text file.\n+\\\\fBTextExporter\\\\fR -- Exports various XML formats to a text file.\n \n-\\fBTransformationEvaluation\\fR -- Applies a transformation to a range of values.\n+\\\\fBTransformationEvaluation\\\\fR -- Applies a transformation to a range of values.\n \n-\\fBXFDR\\fR -- Calculates false discovery rate estimates on crosslink identifications.\n+\\\\fBXFDR\\\\fR -- Calculates false discovery rate estimates on crosslink identifications.\n \n-\\fBXMLValidator\\fR -- Validates XML files against an XSD schema.\n+\\\\fBXMLValidator\\\\fR -- Validates XML files against an XSD schema.\n \n-\\fBXTandemAdapter\\fR -- Annotates MS/MS spectra using X! Tandem.\n+\\\\fBXTandemAdapter\\\\fR -- Annotates MS/MS spectra using X! Tandem.\n \n \n .SH \"BIBLIOGRAPHICAL REFERENCE TO BE CITED\"\n Marc Sturm, Andreas Bertsch, Clemens Gr\u00f6pl, Andreas Hildebrandt, Rene\n Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra\n Zerck, Knut Reinert, and Oliver Kohlbacher (2008)  OpenMS \u2013 an\n Open-Source Software Framework for Mass Spectrometry. \\fI BMC\n"}]}]}]}]}, {"source1": "libopenms2.6.0-dbgsym_2.6.0+cleaned1-4_arm64.deb", "source2": "libopenms2.6.0-dbgsym_2.6.0+cleaned1-4_arm64.deb", "unified_diff": null, "details": [{"source1": "file list", "source2": "file list", "unified_diff": "@@ -1,3 +1,3 @@\n -rw-r--r--   0        0        0        4 2023-12-23 14:20:41.000000 debian-binary\n--rw-r--r--   0        0        0      768 2023-12-23 14:20:41.000000 control.tar.xz\n--rw-r--r--   0        0        0 218872200 2023-12-23 14:20:41.000000 data.tar.xz\n+-rw-r--r--   0        0        0      772 2023-12-23 14:20:41.000000 control.tar.xz\n+-rw-r--r--   0        0        0 218877436 2023-12-23 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