--- /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/b1/mdanalysis_2.9.0-12_amd64.changes
+++ /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/b2/mdanalysis_2.9.0-12_amd64.changes
├── Files
│ @@ -1,4 +1,4 @@
│
│ - 06466a1f58c8fd8852685c1ad0684ac6 3504264 doc optional python-mdanalysis-doc_2.9.0-12_all.deb
│ + ad65e09d9ec98d3e07427da1c415a823 3504272 doc optional python-mdanalysis-doc_2.9.0-12_all.deb
│ ced05a03472cd3023776606481dfc8c7 5850288 debug optional python3-mdanalysis-dbgsym_2.9.0-12_amd64.deb
│ 3680ee0835e0925da5b223599053549c 4203256 python optional python3-mdanalysis_2.9.0-12_amd64.deb
├── python-mdanalysis-doc_2.9.0-12_all.deb
│ ├── file list
│ │ @@ -1,3 +1,3 @@
│ │ -rw-r--r-- 0 0 0 4 2025-07-10 09:07:57.000000 debian-binary
│ │ -rw-r--r-- 0 0 0 14048 2025-07-10 09:07:57.000000 control.tar.xz
│ │ --rw-r--r-- 0 0 0 3490024 2025-07-10 09:07:57.000000 data.tar.xz
│ │ +-rw-r--r-- 0 0 0 3490032 2025-07-10 09:07:57.000000 data.tar.xz
│ ├── control.tar.xz
│ │ ├── control.tar
│ │ │ ├── ./md5sums
│ │ │ │ ├── ./md5sums
│ │ │ │ │┄ Files differ
│ ├── data.tar.xz
│ │ ├── data.tar
│ │ │ ├── ./usr/share/doc/python-mdanalysis-doc/html/documentation_pages/analysis/wbridge_analysis.html
│ │ │ │ @@ -906,23 +906,23 @@
│ │ │ │ Deprecated since version 2.0.0: Will be removed in MDAnalysis 3.0.0. Please use
│ │ │ │ results.timeseries instead.
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │ -
│ │ │ │ -DEFAULT_ACCEPTORS = {'CHARMM27': ('OG1', 'OE1', 'OW', 'OH', 'SG', 'SD', 'O', 'OD2', 'OC2', 'NE2', 'ND1', 'OD1', 'OH2', 'OC1', 'OE2', 'OG'), 'GLYCAM06': ('OY', 'O2', 'OW', 'OH', 'OS', 'SM', 'O', 'N', 'NT'), 'other': ()}
│ │ │ │ +DEFAULT_ACCEPTORS = {'CHARMM27': ('ND1', 'O', 'SG', 'OG1', 'SD', 'OC1', 'NE2', 'OH2', 'OW', 'OC2', 'OE2', 'OG', 'OH', 'OE1', 'OD2', 'OD1'), 'GLYCAM06': ('OY', 'NT', 'OH', 'O', 'OW', 'SM', 'O2', 'N', 'OS'), 'other': ()}
│ │ │ │ default atom names that are treated as hydrogen acceptors
│ │ │ │ (see Default heavy atom names for CHARMM27 force field.);
│ │ │ │ use the keyword acceptors to add a list of additional acceptor names.
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │ -
│ │ │ │ -DEFAULT_DONORS = {'CHARMM27': ('ND2', 'NZ', 'NE2', 'ND1', 'OG1', 'NH1', 'OW', 'OH', 'OH2', 'SG', 'NE1', 'NE', 'NH2', 'N', 'OG'), 'GLYCAM06': ('N3', 'OW', 'OH', 'NT', 'N'), 'other': ()}
│ │ │ │ +DEFAULT_DONORS = {'CHARMM27': ('NH1', 'OH2', 'ND1', 'NZ', 'OW', 'ND2', 'OG', 'SG', 'OH', 'OG1', 'NH2', 'N', 'NE2', 'NE1', 'NE'), 'GLYCAM06': ('OH', 'N3', 'N', 'NT', 'OW'), 'other': ()}
│ │ │ │ default heavy atom names whose hydrogens are treated as donors
│ │ │ │ (see Default heavy atom names for CHARMM27 force field.);
│ │ │ │ use the keyword donors to add a list of additional donor names.
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │ -
│ │ │ │ ├── html2text {}
│ │ │ │ │ @@ -554,24 +554,24 @@
│ │ │ │ │ List of hydrogen bonds between the selection 1 or selection 2 and
│ │ │ │ │ the bridging waters, for each frame.
│ │ │ │ │ Added in version 2.0.0.
│ │ │ │ │ timeseries_¶
│ │ │ │ │ Alias to the _r_e_s_u_l_t_s_._t_i_m_e_s_e_r_i_e_s attribute.
│ │ │ │ │ Deprecated since version 2.0.0: Will be removed in MDAnalysis
│ │ │ │ │ 3.0.0. Please use _r_e_s_u_l_t_s_._t_i_m_e_s_e_r_i_e_s instead.
│ │ │ │ │ - DEFAULT_ACCEPTORS == {{''CCHHAARRMMMM2277'':: ((''OOGG11'',, ''OOEE11'',, ''OOWW'',, ''OOHH'',, ''SSGG'',, ''SSDD'',,
│ │ │ │ │ - ''OO'',, ''OODD22'',, ''OOCC22'',, ''NNEE22'',, ''NNDD11'',, ''OODD11'',, ''OOHH22'',, ''OOCC11'',, ''OOEE22'',, ''OOGG'')),,
│ │ │ │ │ - ''GGLLYYCCAAMM0066'':: ((''OOYY'',, ''OO22'',, ''OOWW'',, ''OOHH'',, ''OOSS'',, ''SSMM'',, ''OO'',, ''NN'',, ''NNTT'')),,
│ │ │ │ │ + DEFAULT_ACCEPTORS == {{''CCHHAARRMMMM2277'':: ((''NNDD11'',, ''OO'',, ''SSGG'',, ''OOGG11'',, ''SSDD'',, ''OOCC11'',,
│ │ │ │ │ + ''NNEE22'',, ''OOHH22'',, ''OOWW'',, ''OOCC22'',, ''OOEE22'',, ''OOGG'',, ''OOHH'',, ''OOEE11'',, ''OODD22'',, ''OODD11'')),,
│ │ │ │ │ + ''GGLLYYCCAAMM0066'':: ((''OOYY'',, ''NNTT'',, ''OOHH'',, ''OO'',, ''OOWW'',, ''SSMM'',, ''OO22'',, ''NN'',, ''OOSS'')),,
│ │ │ │ │ ''ootthheerr'':: (())}}_¶
│ │ │ │ │ default atom names that are treated as hydrogen aacccceeppttoorrss (see
│ │ │ │ │ _D_e_f_a_u_l_t_ _h_e_a_v_y_ _a_t_o_m_ _n_a_m_e_s_ _f_o_r_ _C_H_A_R_M_M_2_7_ _f_o_r_c_e_ _f_i_e_l_d_.); use the
│ │ │ │ │ keywordacceptorsto add a list of additional acceptor names.
│ │ │ │ │ - DEFAULT_DONORS == {{''CCHHAARRMMMM2277'':: ((''NNDD22'',, ''NNZZ'',, ''NNEE22'',, ''NNDD11'',, ''OOGG11'',, ''NNHH11'',,
│ │ │ │ │ - ''OOWW'',, ''OOHH'',, ''OOHH22'',, ''SSGG'',, ''NNEE11'',, ''NNEE'',, ''NNHH22'',, ''NN'',, ''OOGG'')),, ''GGLLYYCCAAMM0066''::
│ │ │ │ │ - ((''NN33'',, ''OOWW'',, ''OOHH'',, ''NNTT'',, ''NN'')),, ''ootthheerr'':: (())}}_¶
│ │ │ │ │ + DEFAULT_DONORS == {{''CCHHAARRMMMM2277'':: ((''NNHH11'',, ''OOHH22'',, ''NNDD11'',, ''NNZZ'',, ''OOWW'',, ''NNDD22'',,
│ │ │ │ │ + ''OOGG'',, ''SSGG'',, ''OOHH'',, ''OOGG11'',, ''NNHH22'',, ''NN'',, ''NNEE22'',, ''NNEE11'',, ''NNEE'')),, ''GGLLYYCCAAMM0066''::
│ │ │ │ │ + ((''OOHH'',, ''NN33'',, ''NN'',, ''NNTT'',, ''OOWW'')),, ''ootthheerr'':: (())}}_¶
│ │ │ │ │ default heavy atom names whose hydrogens are treated as ddoonnoorrss (see
│ │ │ │ │ _D_e_f_a_u_l_t_ _h_e_a_v_y_ _a_t_o_m_ _n_a_m_e_s_ _f_o_r_ _C_H_A_R_M_M_2_7_ _f_o_r_c_e_ _f_i_e_l_d_.); use the
│ │ │ │ │ keyworddonorsto add a list of additional donor names.
│ │ │ │ │ count_by_time(aannaallyyssiiss__ffuunncc==NNoonnee, ****kkwwaarrggss)_[_s_o_u_r_c_e_]_¶
│ │ │ │ │ Counts the number of water bridges per timestep.
│ │ │ │ │ The counting behaviour can be adjusted by supplying analysis_func.
│ │ │ │ │ See _U_s_e_ _c_o_u_n_t___b_y___t_i_m_e for details.