Diff of the two buildlogs: -- --- b1/build.log 2023-05-10 16:51:12.460135889 +0000 +++ b2/build.log 2023-05-10 17:03:51.950864516 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 10 04:42:26 -12 2023 -I: pbuilder-time-stamp: 1683736946 +I: Current time: Wed Jun 12 13:14:15 +14 2024 +I: pbuilder-time-stamp: 1718147655 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./lambda-align2_2.0.0.orig.tar.gz] I: copying [./lambda-align2_2.0.0-9.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Dec 7 03:33:46 2020 -12 +gpgv: Signature made Tue Dec 8 05:33:46 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,135 +32,167 @@ dpkg-source: info: applying glibc-2.32.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/787649/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 13:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8e9b382864d941cb961168a8d864c517' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='787649' - PS1='# ' - PS2='> ' + INVOCATION_ID=f528c31f2b8c439687d1e48f32cc0a42 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1680509 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRwigeKg/pbuilderrc_HS6z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRwigeKg/b1 --logfile b1/build.log lambda-align2_2.0.0-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRwigeKg/pbuilderrc_380i --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRwigeKg/b2 --logfile b2/build.log --extrapackages usrmerge lambda-align2_2.0.0-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/787649/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 12 13:14 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -258,7 +290,7 @@ Get: 50 http://deb.debian.org/debian bookworm/main amd64 libseqan2-dev all 2.4.0+dfsg-15 [1215 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 35.9 MB in 1s (65.0 MB/s) +Fetched 35.9 MB in 1s (37.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -480,8 +512,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lambda-align2-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align2_2.0.0-9_source.changes +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/lambda-align2-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align2_2.0.0-9_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.0-9 dpkg-buildpackage: info: source distribution unstable @@ -566,28 +609,28 @@ -- Build files have been written to: /build/lambda-align2-2.0.0/build make[1]: Leaving directory '/build/lambda-align2-2.0.0' dh_auto_build -O--builddirectory=build - cd build && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/lambda-align2-2.0.0/build' /usr/bin/cmake -S/build/lambda-align2-2.0.0 -B/build/lambda-align2-2.0.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align2-2.0.0/build/CMakeFiles /build/lambda-align2-2.0.0/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align2-2.0.0/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend -make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/lambda-align2-2.0.0/build' cd /build/lambda-align2-2.0.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align2-2.0.0 /build/lambda-align2-2.0.0/src /build/lambda-align2-2.0.0/build /build/lambda-align2-2.0.0/build/src /build/lambda-align2-2.0.0/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake --color= +make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/lambda-align2-2.0.0/build' cd /build/lambda-align2-2.0.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align2-2.0.0 /build/lambda-align2-2.0.0/src /build/lambda-align2-2.0.0/build /build/lambda-align2-2.0.0/build/src /build/lambda-align2-2.0.0/build/src/CMakeFiles/lambda2-sse4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build -make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' make[3]: Entering directory '/build/lambda-align2-2.0.0/build' +make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/build make[3]: Entering directory '/build/lambda-align2-2.0.0/build' -[ 11%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -[ 22%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o -cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=15 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp -cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=15 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp +[ 11%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o +cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=16 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp +[ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o +cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=16 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp In file included from /build/lambda-align2-2.0.0/src/search.hpp:32, from /build/lambda-align2-2.0.0/src/lambda.cpp:22: /build/lambda-align2-2.0.0/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -666,7 +709,7 @@ | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/lambda-align2-2.0.0/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=15 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=16 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -707,9 +750,6 @@ /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -[ 44%] Linking CXX executable ../bin/lambda2-sse4 -cd /build/lambda-align2-2.0.0/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=15 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -849,16 +889,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -871,13 +906,15 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11, - inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In function '_toText': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -937,15 +974,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In function 'append': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -962,12 +995,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In function 'append': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -984,19 +1016,17 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +[ 44%] Linking CXX executable ../bin/lambda2-sse4 +cd /build/lambda-align2-2.0.0/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=16 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1052,11 +1082,13 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'operator++.isra': +/usr/include/c++/12/new: In function 'assign.constprop.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1073,11 +1105,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1090,15 +1127,13 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11, + inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In function '_toText': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1193,11 +1228,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1214,11 +1254,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1236,12 +1281,15 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In function 'assign.constprop.isra': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1259,12 +1307,15 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In function 'assign.constprop.isra': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1282,11 +1333,15 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In function 'append': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1303,11 +1358,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'operator++.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1324,11 +1379,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1345,11 +1405,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1366,14 +1431,39 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In member function 'process.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' +[ 44%] Built target lambda2 +make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend +make[3]: Entering directory '/build/lambda-align2-2.0.0/build' +cd /build/lambda-align2-2.0.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align2-2.0.0 /build/lambda-align2-2.0.0/src /build/lambda-align2-2.0.0/build /build/lambda-align2-2.0.0/build/src /build/lambda-align2-2.0.0/build/src/CMakeFiles/manual.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' +make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build +make[3]: Entering directory '/build/lambda-align2-2.0.0/build' +[ 55%] Generating lambda2.1 +[ 66%] Generating lambda2-searchp.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 --export-help=man > lambda2.1 +[ 77%] Generating lambda2-searchn.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 +[ 88%] Generating lambda2-mkindexp.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 +[100%] Generating lambda2-mkindexn.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 +make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' +[100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1387,11 +1477,13 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In function 'assign.constprop.isra': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1408,11 +1500,12 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'insertStream': +/usr/include/c++/12/new: In function 'append': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1429,16 +1522,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1455,16 +1543,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1481,16 +1564,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1507,7 +1585,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1528,7 +1606,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1549,16 +1627,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1575,16 +1648,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1601,7 +1669,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1622,7 +1690,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1643,16 +1711,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/12/new: In member function 'process.isra': +/usr/include/c++/12/new: In member function 'insertStream': /usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1741,26 +1804,6 @@ 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' -[ 44%] Built target lambda2 -make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend -make[3]: Entering directory '/build/lambda-align2-2.0.0/build' -cd /build/lambda-align2-2.0.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align2-2.0.0 /build/lambda-align2-2.0.0/src /build/lambda-align2-2.0.0/build /build/lambda-align2-2.0.0/build/src /build/lambda-align2-2.0.0/build/src/CMakeFiles/manual.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' -make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build -make[3]: Entering directory '/build/lambda-align2-2.0.0/build' -[ 55%] Generating lambda2.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 --export-help=man > lambda2.1 -[ 66%] Generating lambda2-searchn.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 -[ 77%] Generating lambda2-searchp.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 -[ 88%] Generating lambda2-mkindexp.1 -[100%] Generating lambda2-mkindexn.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 -make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' -[100%] Built target manual -make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/lambda-align2-2.0.0/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align2-2.0.0/build/CMakeFiles 0 @@ -1779,7 +1822,7 @@ rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/lambda-align2-2.0.0/debian/lambda-align2 - cd build && make -j15 install DESTDIR=/build/lambda-align2-2.0.0/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j16 install DESTDIR=/build/lambda-align2-2.0.0/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align2-2.0.0/build' /usr/bin/cmake -S/build/lambda-align2-2.0.0 -B/build/lambda-align2-2.0.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1827,21 +1870,21 @@ sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman + man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 make[1]: Leaving directory '/build/lambda-align2-2.0.0' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build @@ -1895,12 +1938,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1680509/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/787649 and its subdirectories -I: Current time: Wed May 10 04:51:12 -12 2023 -I: pbuilder-time-stamp: 1683737472 +I: removing directory /srv/workspace/pbuilder/1680509 and its subdirectories +I: Current time: Wed Jun 12 13:26:51 +14 2024 +I: pbuilder-time-stamp: 1718148411