Diff of the two buildlogs: -- --- b1/build.log 2023-06-11 17:48:49.674734889 +0000 +++ b2/build.log 2023-06-11 17:50:31.022300171 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Aug 15 18:33:30 -12 2025 -I: pbuilder-time-stamp: 1755326010 +I: Current time: Mon Jun 12 07:48:52 +14 2023 +I: pbuilder-time-stamp: 1686505732 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Apr 19 04:58:04 2020 -12 +gpgv: Signature made Mon Apr 20 06:58:04 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,167 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/383430/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 07:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='93904d587bf24b1a86f9f403c953bae7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='383430' - PS1='# ' - PS2='> ' + INVOCATION_ID=16ed08289acf421d8ee9dd20db9ae0ad + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1792570 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bVjonQ1M/pbuilderrc_tjH2 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bVjonQ1M/b1 --logfile b1/build.log lucy_1.20-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bVjonQ1M/pbuilderrc_w2EA --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bVjonQ1M/b2 --logfile b2/build.log --extrapackages usrmerge lucy_1.20-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/383430/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 12 07:49 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -223,7 +255,7 @@ Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] -Fetched 18.7 MB in 0s (37.7 MB/s) +Fetched 18.7 MB in 1s (31.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) @@ -357,8 +389,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-3 dpkg-buildpackage: info: source distribution unstable @@ -368,7 +411,7 @@ debian/rules clean dh clean dh_auto_clean - make -j16 clean + make -j15 clean make[1]: Entering directory '/build/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/lucy-1.20' @@ -391,13 +434,14 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j16 "INSTALL=install --strip-program=true" + make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lucy-1.20' cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c +cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] 10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean" | @@ -515,7 +559,6 @@ qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] 48 | /**************************************************************************/ | -cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] 24 | static condition[]={ | ^~~~~~~~~ @@ -526,7 +569,6 @@ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] 82 | giveup("how can other cases happen in tag_code?"); | ^~~~~~ -done! abi.c: In function 'abi_align': abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] 195 | if (badness[a[i]][b[j]]) { @@ -564,16 +606,13 @@ abi.c:252:36: warning: array subscript has type 'char' [-Wchar-subscripts] 252 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ -abi.c:294:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:301:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:313:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:320:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:334:45: warning: array subscript has type 'char' [-Wchar-subscripts] - 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:341:30: warning: array subscript has type 'char' [-Wchar-subscripts] - 341 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ splice.c:16:38: warning: array subscript has type 'char' [-Wchar-subscripts] 16 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ @@ -695,13 +704,25 @@ splice.c:114:40: note: in expansion of macro 'Direc' 114 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)]; | ^~~~~ +abi.c:301:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ splice.c: In function 'splice_align_right': splice.c:176:12: warning: type defaults to 'int' in declaration of 'left' [-Wimplicit-int] 176 | register left, top, direc, score, i, j; | ^~~~ +abi.c:313:45: warning: array subscript has type 'char' [-Wchar-subscripts] + 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ splice.c:176:18: warning: type defaults to 'int' in declaration of 'top' [-Wimplicit-int] 176 | register left, top, direc, score, i, j; | ^~~ @@ -714,27 +735,45 @@ splice.c:176:37: warning: type defaults to 'int' in declaration of 'i' [-Wimplicit-int] 176 | register left, top, direc, score, i, j; | ^ +abi.c:320:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ splice.c:189:34: warning: array subscript has type 'char' [-Wchar-subscripts] 189 | Score(0,0)=max_score=match[*a][*b]; | ^~ +abi.c:334:45: warning: array subscript has type 'char' [-Wchar-subscripts] + 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ splice.c:196:18: warning: array subscript has type 'char' [-Wchar-subscripts] 196 | score=match[a[i]][*b]; | ~^~~ splice.c:196:23: warning: array subscript has type 'char' [-Wchar-subscripts] 196 | score=match[a[i]][*b]; | ^~ +abi.c:341:30: warning: array subscript has type 'char' [-Wchar-subscripts] + 341 | if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) | ~~~~~~~~^~~~~~~~~~~~~~~~~ +poly.c: In function 'poly_at_left': +poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] + 22 | if (abi_code(*seq)==T) { + | ^~~~~~~~ lucy.c: In function 'hashstring': lucy.c:111:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 111 | if (g = value&0xF0000000) { @@ -792,10 +835,39 @@ lucy.c:247:7: warning: implicit declaration of function 'splice_align_right' [-Wimplicit-function-declaration] 247 | splice_align_right(id, target_seq[id]+seqs[i].left, | ^~~~~~~~~~~~~~~~~~ +vector.c: In function 'construct_vector_tags': +vector.c:85:34: warning: array subscript has type 'char' [-Wchar-subscripts] + 85 | accr|=tag_code(rev_code[seq[len-k%len-1]]); + | ~~~^~~~~~~~~~~~~ lucy.c: At top level: lucy.c:284:1: warning: return type defaults to 'int' [-Wimplicit-int] 284 | main (argc, argv) | ^~~~ +lucy.c: In function 'main': +lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] + 361 | set_bracket(bracket_size, bracket_err); + | ^~~~~~~~~~~ +lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] + 469 | default_windows(); + | ^~~~~~~~~~~~~~~ +lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] + 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) + | ^ +lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] + 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); + | ^~~~~~~~~~~~ +lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] + 669 | prepare_abi_mask(); + | ^~~~~~~~~~~~~~~~ +lucy.c:713:9: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] + 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); + | ^~~~~~~~~ +lucy.c:792:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] + 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { + | ^ +lucy.c:891:14: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] + 891 | left=poly_at_left(&phred_seq[seqs[i].left], + | ^~~~~~~~~~~~ qual_trim.c:214:1: warning: "/*" within comment [-Wcomment] 214 | /* Determines some number of candidate clean ranges using a particular | @@ -835,12 +907,25 @@ qual_trim.c:337:1: warning: "/*" within comment [-Wcomment] 337 | /* double end_limit, (maximum allowed probability of error for bases) | +lucy.c:894:15: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] + 894 | right=poly_at_right(&phred_seq[seqs[i].right], + | ^~~~~~~~~~~~~ qual_trim.c:338:1: warning: "/*" within comment [-Wcomment] 338 | /* ( at each end of clean range) | qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] 339 | /* | +vector.c: In function 'tag_code': +vector.c:44:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 44 | return tmp; + | ^~~ +vector.c:22:16: note: 'tmp' was declared here + 22 | register int tmp; + | ^~~ +lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] + 934 | construct_vector_tags(vec_seq, bases); + | ^~~~~~~~~~~~~~~~~~~~~ qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] 434 | /* Determines a single clean range, after recursively considering all of | @@ -865,10 +950,6 @@ qual_trim.c:441:1: warning: "/*" within comment [-Wcomment] 441 | /* double end_limit, (maximum allowed probability of error for bases) | -lucy.c: In function 'main': -lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] - 361 | set_bracket(bracket_size, bracket_err); - | ^~~~~~~~~~~ qual_trim.c:442:1: warning: "/*" within comment [-Wcomment] 442 | /* ( at each end of clean range) | @@ -953,6 +1034,9 @@ qual_trim.c:684:1: warning: "/*" within comment [-Wcomment] 684 | /* double *err_limits, (array of maximum allowed average probability) | +lucy.c:947:11: warning: implicit declaration of function 'match_vector_tags' [-Wimplicit-function-declaration] + 947 | j=match_vector_tags(phred_seq+seqs[i].left, bases); + | ^~~~~~~~~~~~~~~~~ qual_trim.c:685:1: warning: "/*" within comment [-Wcomment] 685 | /* ( for each window size) | @@ -1015,18 +1099,22 @@ qual_trim.c:826:1: warning: "/*" within comment [-Wcomment] 826 | /* Simulates the functionality of the old grim() function, by calling | +abi.c: In function 'abi_code': qual_trim.c:827:1: warning: "/*" within comment [-Wcomment] 827 | /* quality_trim(). | +abi.c:84:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 84 | return tmp; + | ^~~ +abi.c:62:16: note: 'tmp' was declared here + 62 | register int tmp; + | ^~~ qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] 828 | /* | qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] 829 | /* Globals used: | -lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] - 469 | default_windows(); - | ^~~~~~~~~~~~~~~ qual_trim.c:830:1: warning: "/*" within comment [-Wcomment] 830 | /* int num_windows, (number of windows) | @@ -1051,57 +1139,12 @@ qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* | -lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] - 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) - | ^ -vector.c: In function 'construct_vector_tags': -vector.c:85:34: warning: array subscript has type 'char' [-Wchar-subscripts] - 85 | accr|=tag_code(rev_code[seq[len-k%len-1]]); - | ~~~^~~~~~~~~~~~~ -lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] - 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); - | ^~~~~~~~~~~~ -lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] - 669 | prepare_abi_mask(); - | ^~~~~~~~~~~~~~~~ -lucy.c:713:9: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] - 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); - | ^~~~~~~~~ -lucy.c:792:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] - 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { - | ^ -lucy.c:891:14: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] - 891 | left=poly_at_left(&phred_seq[seqs[i].left], - | ^~~~~~~~~~~~ -lucy.c:894:15: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] - 894 | right=poly_at_right(&phred_seq[seqs[i].right], - | ^~~~~~~~~~~~~ -lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] - 934 | construct_vector_tags(vec_seq, bases); - | ^~~~~~~~~~~~~~~~~~~~~ -lucy.c:947:11: warning: implicit declaration of function 'match_vector_tags' [-Wimplicit-function-declaration] - 947 | j=match_vector_tags(phred_seq+seqs[i].left, bases); - | ^~~~~~~~~~~~~~~~~ lucy.c:959:5: warning: implicit declaration of function 'destroy_vector_tags' [-Wimplicit-function-declaration] 959 | destroy_vector_tags(); | ^~~~~~~~~~~~~~~~~~~ lucy.c:631:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 631 | fgets(buf, BUFFER_LENGTH, qul_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -vector.c: In function 'tag_code': -vector.c:44:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 44 | return tmp; - | ^~~ -vector.c:22:16: note: 'tmp' was declared here - 22 | register int tmp; - | ^~~ -abi.c: In function 'abi_code': -abi.c:84:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 84 | return tmp; - | ^~~ -abi.c:62:16: note: 'tmp' was declared here - 62 | register int tmp; - | ^~~ rm -f lucy cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[1]: Leaving directory '/build/lucy-1.20' @@ -1215,12 +1258,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1792570/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/383430 and its subdirectories -I: Current time: Fri Aug 15 18:34:51 -12 2025 -I: pbuilder-time-stamp: 1755326091 +I: removing directory /srv/workspace/pbuilder/1792570 and its subdirectories +I: Current time: Mon Jun 12 07:50:30 +14 2023 +I: pbuilder-time-stamp: 1686505830