Diff of the two buildlogs: -- --- b1/build.log 2023-04-21 20:11:12.216672757 +0000 +++ b2/build.log 2023-04-21 20:23:16.140565427 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 23 14:28:56 -12 2024 -I: pbuilder-time-stamp: 1716517736 +I: Current time: Sat Apr 22 10:11:15 +14 2023 +I: pbuilder-time-stamp: 1682107875 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./pftools_3.2.12.orig.tar.gz] I: copying [./pftools_3.2.12-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Mar 26 04:04:52 2022 -12 +gpgv: Signature made Sun Mar 27 06:04:52 2022 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,167 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1838975/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 22 10:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='eb9c61e35bb64757aeb04e5d9d80d844' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1838975' - PS1='# ' - PS2='> ' + INVOCATION_ID=9c689c54a489412297e8c80c4e1f5a11 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2288667 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cQUhVMki/pbuilderrc_5cFS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cQUhVMki/b1 --logfile b1/build.log pftools_3.2.12-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cQUhVMki/pbuilderrc_J6PP --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cQUhVMki/b2 --logfile b2/build.log --extrapackages usrmerge pftools_3.2.12-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1838975/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 22 10:11 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -273,7 +305,7 @@ Get: 62 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 47.2 MB in 1s (73.8 MB/s) +Fetched 47.2 MB in 1s (31.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -545,8 +577,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/pftools-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pftools_3.2.12-1_source.changes +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/pftools-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pftools_3.2.12-1_source.changes dpkg-buildpackage: info: source package pftools dpkg-buildpackage: info: source version 3.2.12-1 dpkg-buildpackage: info: source distribution unstable @@ -676,7 +719,7 @@ -- Build files have been written to: /build/pftools-3.2.12/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/pftools-3.2.12' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.12 -B/build/pftools-3.2.12/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/pftools-3.2.12/obj-x86_64-linux-gnu/CMakeFiles /build/pftools-3.2.12/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -686,115 +729,83 @@ make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake --color= make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake --color= -make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/sse2 /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake --color= -make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/build +make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/sse41 /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend -make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake --color= +make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/build make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake --color= -make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= -make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 1%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -MF CMakeFiles/OUTPUT_FORMAT.dir/output.c.o.d -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/pftools-3.2.12/src/C/utils/output.c -make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend -[ 2%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o +[ 1%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake --color= +make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/build cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -I/usr/include -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -MF CMakeFiles/REGEXP.dir/utils/pfregexp.c.o.d -o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -c /build/pftools-3.2.12/src/C/utils/pfregexp.c -make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend +make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= +[ 2%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -MF CMakeFiles/SSE2.dir/heuristic_sse2.c.o.d -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-3.2.12/src/C/sse2/heuristic_sse2.c make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake --color= +make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend +[ 4%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o +[ 5%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o -MF CMakeFiles/SSE41.dir/heuristic_sse41.c.o.d -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/pftools-3.2.12/src/C/sse41/heuristic_sse41.c +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -MF CMakeFiles/SSE2.dir/xali1_sse2.c.o.d -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/pftools-3.2.12/src/C/sse2/xali1_sse2.c make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 4%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -MD -MT src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -MF CMakeFiles/SSE2.dir/heuristic_sse2.c.o.d -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-3.2.12/src/C/sse2/heuristic_sse2.c -[ 5%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o -[ 7%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -[ 8%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= +[ 7%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o +[ 8%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -MF CMakeFiles/OUTPUT_FORMAT.dir/output.c.o.d -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/pftools-3.2.12/src/C/utils/output.c +[ 10%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o +[ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions 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/build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -MF CMakeFiles/SSE41.dir/xalit_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-3.2.12/src/C/sse41/xalit_sse41.c +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -MF CMakeFiles/PROFILES.dir/profile.c.o.d -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-3.2.12/src/C/utils/profile.c +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 20%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -c /build/pftools-3.2.12/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o -[ 23%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -MF CMakeFiles/pfpam.dir/utils/pam.c.o.d -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-3.2.12/src/C/utils/pam.c -[ 25%] Linking C executable pfsplit -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit +[ 22%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -MF CMakeFiles/SEQUENCES.dir/ReadSequence.c.o.d -o CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -c /build/pftools-3.2.12/src/C/utils/ReadSequence.c /build/pftools-3.2.12/src/C/utils/pfregexp.c: In function 'InitRegExFromString': /build/pftools-3.2.12/src/C/utils/pfregexp.c:88:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 88 | fprintf(stderr, "pcre2_compile failed (offset: %d), %s\n", erroffset, error); @@ -822,208 +833,247 @@ | char * int | %d make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 25%] Built target pfsplit -make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend +[ 22%] Built target REGEXP +make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". -[ 26%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o -Scanning dependencies of target htop -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o -MF CMakeFiles/SSE41.dir/xalip_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/pftools-3.2.12/src/C/sse41/xalip_sse41.c +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build +make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build +[ 23%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 28%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -MF CMakeFiles/PROFILES.dir/Normalization.c.o.d -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-3.2.12/src/C/utils/Normalization.c +[ 25%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -MF CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o.d -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/pftools-3.2.12/src/C/utils/pam.c +make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= +make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 29%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -MD -MT src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -MF CMakeFiles/SSE41.dir/xalit_sse41.c.o.d -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-3.2.12/src/C/sse41/xalit_sse41.c -[ 29%] Built target SEQUENCES_EXTRA +make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend +make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 26%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfdump.dir/utils/io.c.o -MF CMakeFiles/pfdump.dir/utils/io.c.o.d -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-3.2.12/src/C/utils/io.c +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 28%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -MF CMakeFiles/pfpam.dir/utils/pam.c.o.d -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-3.2.12/src/C/utils/pam.c +[ 29%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfsplit.dir/prg/split.c.o -MF CMakeFiles/pfsplit.dir/prg/split.c.o.d -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/pftools-3.2.12/src/C/prg/split.c +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= +[ 29%] Built target quantile +make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake --color= +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". +Scanning dependencies of target gtop make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran 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Scanning dependencies of target ptoh +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +Scanning dependencies of target htop make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 29%] Built target REGEXP -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build +[ 31%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 31%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o +[ 32%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o +[ 34%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/gtop.dir/io.c.o -MF CMakeFiles/gtop.dir/io.c.o.d -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-3.2.12/src/Fortran/io.c +[ 35%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/depend -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/io.c.o -MF CMakeFiles/pfpam.dir/utils/io.c.o.d -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-3.2.12/src/C/utils/io.c make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake --color= -[ 32%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/random.c.o -MF CMakeFiles/pfpam.dir/utils/random.c.o.d -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-3.2.12/src/C/utils/random.c -[ 34%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o -[ 34%] Built target SEQUENCES +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 37%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/io.c.o -MF CMakeFiles/pfpam.dir/utils/io.c.o.d -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-3.2.12/src/C/utils/io.c +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". +Scanning dependencies of target ptof +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 37%] Built target SEQUENCES make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/depend -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake --color= -[ 34%] Built target quantile +[ 38%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o +[ 38%] Built target SEQUENCES_EXTRA make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". -Scanning dependencies of target ptof -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build +[ 40%] Linking C executable pfsplit +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Scanning dependencies of target pfw make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -rhmmer2.f:265:17: - -Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) -rhmmer2.f:265:29: - -Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) -rhmmer2.f:274:17: - -Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) -rhmmer2.f:274:29: - -Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit +[ 40%] Built target SSE2 make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". -Scanning dependencies of target 2ft make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake --color= +Scanning dependencies of target 2ft make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build -[ 35%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/gtop.dir/io.c.o -MF CMakeFiles/gtop.dir/io.c.o.d -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-3.2.12/src/Fortran/io.c -[ 37%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Scanning dependencies of target 6ft +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 41%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 38%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/pfw.dir/io.c.o -MF CMakeFiles/pfw.dir/io.c.o.d -o CMakeFiles/pfw.dir/io.c.o -c /build/pftools-3.2.12/src/Fortran/io.c make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 40%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o +[ 43%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o -[ 40%] Built target SYSTEM -[ 41%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o -make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend -make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake --color= +[ 44%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o -[ 43%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o -make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 44%] Built target pfsplit +make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". -Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Scanning dependencies of target psa2msa make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build -Scanning dependencies of target pfscan +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 46%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o +rhmmer2.f:265:17: + +Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) +rhmmer2.f:265:29: + +Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) +rhmmer2.f:274:17: + +Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +rhmmer2.f:274:29: + +Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +[ 47%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -MF CMakeFiles/psa2msa.dir/io.c.o.d -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-3.2.12/src/Fortran/io.c make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 47%] Built target SSE41 +make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake --color= +[ 49%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfpam.dir/utils/random.c.o -MF CMakeFiles/pfpam.dir/utils/random.c.o.d -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-3.2.12/src/C/utils/random.c +[ 49%] Built target SYSTEM +make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake --color= +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". +Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". +Scanning dependencies of target pfscan Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build Scanning dependencies of target pfmake +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 43%] Built target SSE2 make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build -make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 50%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o +[ 52%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o +[ 53%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake --color= -[ 44%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o -[ 46%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -MD -MT src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -MF CMakeFiles/psa2msa.dir/io.c.o.d -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-3.2.12/src/Fortran/io.c Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Scanning dependencies of target pfscale +[ 53%] Built target OUTPUT_FORMAT make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build -[ 47%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o -[ 49%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o -[ 50%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o -[ 52%] Linking Fortran executable 2ft -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 52%] Built target 2ft make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake --color= -[ 53%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -MF CMakeFiles/PROFILES.dir/profile.c.o.d -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-3.2.12/src/C/utils/profile.c Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Dependee "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 55%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o Scanning dependencies of target pfsearch make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 53%] Built target SSE41 +[ 56%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o +[ 58%] Linking Fortran executable 6ft +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 59%] Linking Fortran executable 2ft +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 +[ 59%] Built target 6ft make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 55%] Linking Fortran executable 6ft -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 -[ 56%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -fno-automatic -std=legacy -c /build/pftools-3.2.12/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o -[ 56%] Built target OUTPUT_FORMAT -[ 58%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft +[ 61%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o -MF CMakeFiles/CALIBRATION.dir/random.c.o.d -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/pftools-3.2.12/src/C/utils/random.c +[ 62%] Linking Fortran executable psa2msa +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa +[ 62%] Built target 2ft make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake --color= +[ 64%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o -MF CMakeFiles/CALIBRATION.dir/histogram.c.o.d -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/pftools-3.2.12/src/C/utils/histogram.c make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 59%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o +[ 65%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o -MF CMakeFiles/pfindex.dir/prg/pfindex.c.o.d -o CMakeFiles/pfindex.dir/prg/pfindex.c.o -c /build/pftools-3.2.12/src/C/prg/pfindex.c make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 61%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o -MF CMakeFiles/CALIBRATION.dir/histogram.c.o.d -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/pftools-3.2.12/src/C/utils/histogram.c -[ 61%] Built target 6ft -make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 62%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfdump.dir/utils/io.c.o -MF CMakeFiles/pfdump.dir/utils/io.c.o.d -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-3.2.12/src/C/utils/io.c +[ 65%] Built target psa2msa /build/pftools-3.2.12/src/C/prg/pfindex.c: In function 'Usage': /build/pftools-3.2.12/src/C/prg/pfindex.c:84:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); @@ -1031,66 +1081,58 @@ /build/pftools-3.2.12/src/C/prg/pfindex.c:84:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ -[ 64%] Linking Fortran executable psa2msa -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa -[ 65%] Linking C executable pfindex +[ 67%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -MF CMakeFiles/CALIBRATION.dir/quantileregression.c.o.d -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-3.2.12/src/C/utils/quantileregression.c +[ 68%] Linking C executable pfindex cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfindex.dir/link.txt --verbose=1 -[ 67%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -MF CMakeFiles/PROFILES.dir/Normalization.c.o.d -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-3.2.12/src/C/utils/Normalization.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 67%] Built target psa2msa -[ 68%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -MF CMakeFiles/CALIBRATION.dir/quantileregression.c.o.d -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-3.2.12/src/C/utils/quantileregression.c -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 70%] Linking Fortran executable pfw +[ 68%] Built target pfindex +[ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -MF CMakeFiles/CALIBRATION.dir/generatesequences.c.o.d -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-3.2.12/src/C/utils/generatesequences.c +[ 71%] Linking Fortran executable pfw cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw -[ 70%] Built target pfindex -[ 71%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -MF CMakeFiles/CALIBRATION.dir/generatesequences.c.o.d -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-3.2.12/src/C/utils/generatesequences.c make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' [ 71%] Built target pfw make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 71%] Built target CALIBRATION make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' [ 71%] Built target PROFILES make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/depend -make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake --color= -make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend +make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend +[ 71%] Built target CALIBRATION make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake --color= make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build +make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.12 /build/pftools-3.2.12/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build -make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build -[ 73%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -MF CMakeFiles/pfscanV3.dir/prg/pfscan.c.o.d -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-3.2.12/src/C/prg/pfscan.c -[ 74%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -MF CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o.d -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/pftools-3.2.12/src/C/prg/pfcalibrate.c -[ 76%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o -MF CMakeFiles/pfemit.dir/utils/generatesequences.c.o.d -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-3.2.12/src/C/utils/generatesequences.c -[ 77%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o +make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build +make[3]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 73%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -I/usr/include -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -MF CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o.d -o CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -c /build/pftools-3.2.12/src/C/prg/pfsearch.c -[ 79%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o +[ 74%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o -MF CMakeFiles/pfemit.dir/utils/generatesequences.c.o.d -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-3.2.12/src/C/utils/generatesequences.c +[ 76%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o +[ 77%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o +[ 79%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfemit.dir/utils/random.c.o -MF CMakeFiles/pfemit.dir/utils/random.c.o.d -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/pftools-3.2.12/src/C/utils/random.c -/build/pftools-3.2.12/src/C/prg/pfscan.c: In function 'Usage': +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -MF CMakeFiles/pfscanV3.dir/prg/pfscan.c.o.d -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-3.2.12/src/C/prg/pfscan.c +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.12/src/C/include/ -MD -MT src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -MF CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o.d -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/pftools-3.2.12/src/C/prg/pfcalibrate.c /build/pftools-3.2.12/src/C/prg/pfcalibrate.c: In function 'Usage': /build/pftools-3.2.12/src/C/prg/pfcalibrate.c:287:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", @@ -1098,22 +1140,6 @@ /build/pftools-3.2.12/src/C/prg/pfcalibrate.c:287:93: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ -/build/pftools-3.2.12/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", - | ^~~~~~~~ -/build/pftools-3.2.12/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", - | ^~~~~~~~ -/build/pftools-3.2.12/src/C/prg/pfscan.c: In function 'main': -/build/pftools-3.2.12/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 368 | fputs(HEADER - | ^~~~~~ -/build/pftools-3.2.12/src/C/prg/pfscan.c:26:30: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" - | ^~~~~~~~ -/build/pftools-3.2.12/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' - 368 | fputs(HEADER - | ^~~~~~ /build/pftools-3.2.12/src/C/prg/pfcalibrate.c: In function 'main': /build/pftools-3.2.12/src/C/prg/pfcalibrate.c:963:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 963 | fputs(HEADER @@ -1124,6 +1150,13 @@ /build/pftools-3.2.12/src/C/prg/pfcalibrate.c:963:23: note: in expansion of macro 'HEADER' 963 | fputs(HEADER | ^~~~~~ +/build/pftools-3.2.12/src/C/prg/pfscan.c: In function 'Usage': +/build/pftools-3.2.12/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", + | ^~~~~~~~ +/build/pftools-3.2.12/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", + | ^~~~~~~~ /build/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'Usage': /build/pftools-3.2.12/src/C/prg/pfsearch.c:191:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); @@ -1131,6 +1164,16 @@ /build/pftools-3.2.12/src/C/prg/pfsearch.c:191:69: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); | ^~~~~~~~ +/build/pftools-3.2.12/src/C/prg/pfscan.c: In function 'main': +/build/pftools-3.2.12/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 368 | fputs(HEADER + | ^~~~~~ +/build/pftools-3.2.12/src/C/prg/pfscan.c:26:30: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" + | ^~~~~~~~ +/build/pftools-3.2.12/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' + 368 | fputs(HEADER + | ^~~~~~ /build/pftools-3.2.12/src/C/prg/pfsearch.c: In function 'main': /build/pftools-3.2.12/src/C/prg/pfsearch.c:494:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 494 | fputs(HEADER @@ -1144,33 +1187,33 @@ [ 80%] Linking C executable pfemit cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfemit.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfemit.dir/utils/generatesequences.c.o CMakeFiles/pfemit.dir/utils/random.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o -o pfemit -lm -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 80%] Built target pfemit -[ 82%] Linking Fortran executable gtop -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop -[ 83%] Linking C executable pfpam +[ 82%] Linking C executable pfpam cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 83%] Built target gtop +[ 83%] Linking C executable pfdump +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfdump.dir/link.txt --verbose=1 +[ 83%] Built target pfemit +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfdump.dir/utils/io.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -o pfdump /usr/lib/x86_64-linux-gnu/libpcre2-8.so make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' [ 83%] Built target pfpam -[ 85%] Linking C executable pfscanV3 -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscanV3.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfscanV3.dir/prg/pfscan.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfscanV3 /usr/lib/x86_64-linux-gnu/libpcre2-8.so -lm -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 85%] Built target pfscanV3 -[ 86%] Linking Fortran executable ptoh +[ 85%] Linking Fortran executable ptoh cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptoh.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/ptoh.dir/ptoh.f.o -o ptoh -[ 88%] Linking C executable pfdump -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfdump.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfdump.dir/utils/io.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -o pfdump /usr/lib/x86_64-linux-gnu/libpcre2-8.so +[ 85%] Built target pfdump +[ 86%] Linking Fortran executable gtop +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 88%] Built target ptoh -[ 88%] Built target pfdump +[ 86%] Built target ptoh +[ 86%] Built target gtop +[ 88%] Linking C executable pfscanV3 +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscanV3.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfscanV3.dir/prg/pfscan.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfscanV3 /usr/lib/x86_64-linux-gnu/libpcre2-8.so -lm +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 88%] Built target pfscanV3 [ 89%] Linking C executable pfcalibrateV3 cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfcalibrateV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o utils/CMakeFiles/CALIBRATION.dir/random.c.o utils/CMakeFiles/CALIBRATION.dir/histogram.c.o utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o ../Fortran/CMakeFiles/quantile.dir/rq0.f.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfcalibrateV3 -lm -lgfortran -lm -lquadmath -lm @@ -1180,39 +1223,39 @@ [ 89%] Built target pfcalibrateV3 [ 91%] Linking Fortran executable htop cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/htop.dir/link.txt --verbose=1 +[ 92%] Linking C executable pfsearchV3 +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/htop.dir/htop.f.o -o htop -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 91%] Built target htop -[ 92%] Linking Fortran executable pfscale -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre2-8.so -lm [ 94%] Linking Fortran executable ptof cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptof.dir/link.txt --verbose=1 -[ 94%] Built target pfscale +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/ptof.dir/ptof.f.o -o ptof +[ 94%] Built target pfsearchV3 make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 95%] Linking C executable pfsearchV3 -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 +[ 94%] Built target htop +[ 95%] Linking Fortran executable pfscale +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale [ 95%] Built target ptof -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre2-8.so -lm make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[ 95%] Built target pfscale [ 97%] Linking Fortran executable pfmake cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfmake.dir/link.txt --verbose=1 -[ 97%] Built target pfsearchV3 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfmake.dir/pfmake.f.o -o pfmake make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' [ 97%] Built target pfmake -[ 98%] Linking Fortran executable pfscan -cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscan.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfscan.dir/pfscan.f.o -o pfscan -make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[ 98%] Built target pfscan -[100%] Linking Fortran executable pfsearch +[ 98%] Linking Fortran executable pfsearch cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearch.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfsearch.dir/pfsearch.f.o -o pfsearch make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' -[100%] Built target pfsearch +[ 98%] Built target pfsearch +[100%] Linking Fortran executable pfscan +cd /build/pftools-3.2.12/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscan.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -lpcre2-8 -g -O2 -ffile-prefix-map=/build/pftools-3.2.12=. -fstack-protector-strong CMakeFiles/pfscan.dir/pfscan.f.o -o pfscan +make[3]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' +[100%] Built target pfscan make[2]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pftools-3.2.12/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' @@ -1237,7 +1280,7 @@ test 1 Start 1: execute_test_V2.sh -1: Test command: /bin/sh "-ve" "test_V2.sh" +1: Test command: /usr/bin/sh "-ve" "test_V2.sh" 1: Working Directory: /build/pftools-3.2.12/testing/examples/ 1: Test timeout computed to be: 1500 1: #!/bin/sh -ve @@ -1513,7 +1556,7 @@ 1: $PFW -N 1000 sh3.msf | ${PFMAKE} -b -H 0.6 - $CMPDIR/blosum45.cmp 1: ID SEQUENCE_PROFILE; MATRIX. 1: AC ZZ99999; -1: DT Thu May 23 14:30:40 2024 +1: DT Sat Apr 22 10:13:24 2023 1: DE Generated from MSF file: 'stdin'. 1: MA /GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=62; 1: MA /DISJOINT: DEFINITION=PROTECT; N1=6; N2=57; @@ -2629,11 +2672,11 @@ 1: # S 1868 DLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNKL -18 1: # 1: -1/6 Test #1: execute_test_V2.sh .......................... Passed 1.46 sec +1/6 Test #1: execute_test_V2.sh .......................... Passed 1.79 sec test 2 Start 2: execute_test_V3.sh -2: Test command: /bin/sh "-ve" "test_V3.sh" +2: Test command: /usr/bin/sh "-ve" "test_V3.sh" 2: Working Directory: /build/pftools-3.2.12/testing/examples/ 2: Test timeout computed to be: 1500 2: #!/bin/sh -ve @@ -4850,14 +4893,14 @@ 2: KLEECSQRANnGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEA-MEKENLRLALDAMRD 2: LAQCVNEV 2: -2/6 Test #2: execute_test_V3.sh .......................... Passed 78.38 sec +2/6 Test #2: execute_test_V3.sh .......................... Passed 119.60 sec test 3 Start 3: check_output_of_test_V3.sh -3: Test command: /bin/sh "-e" "test_V3_output.sh" +3: Test command: /usr/bin/sh "-e" "test_V3_output.sh" 3: Working Directory: /build/pftools-3.2.12/testing/examples/ 3: Test timeout computed to be: 1500 -3/6 Test #3: check_output_of_test_V3.sh .................. Passed 43.38 sec +3/6 Test #3: check_output_of_test_V3.sh .................. Passed 131.92 sec test 4 Start 4: execute_test_scan_search.pl @@ -6027,7 +6070,7 @@ 4: # test Ok : --sse2 -t 2 -i /tmp/test_scan_search/seq/all.idx  4: 4: # system : rm -Rf /tmp/test_scan_search -4/6 Test #4: execute_test_scan_search.pl ................. Passed 5.82 sec +4/6 Test #4: execute_test_scan_search.pl ................. Passed 45.35 sec test 5 Start 5: execute_test_pfsearchV3_iupac.pl @@ -6119,11 +6162,11 @@ 5: # Error : 0 5: # test : PASS 5: -5/6 Test #5: execute_test_pfsearchV3_iupac.pl ............ Passed 31.52 sec +5/6 Test #5: execute_test_pfsearchV3_iupac.pl ............ Passed 105.83 sec test 6 Start 6: execute_test_pfsearchV3_pattern-regexp.sh -6: Test command: /bin/sh "-ve" "test_pfsearchV3_pattern-regexp.sh" +6: Test command: /usr/bin/sh "-ve" "test_pfsearchV3_pattern-regexp.sh" 6: Working Directory: /build/pftools-3.2.12/testing/examples/ 6: Test timeout computed to be: 1500 6: #!/bin/sh -ve @@ -6241,11 +6284,11 @@ 6: # Cleaning 6: rm -Rf $TMPDIR 6: -6/6 Test #6: execute_test_pfsearchV3_pattern-regexp.sh ... Passed 0.95 sec +6/6 Test #6: execute_test_pfsearchV3_pattern-regexp.sh ... Passed 1.40 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 161.51 sec +Total Test time (real) = 405.91 sec make[2]: Leaving directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/pftools-3.2.12' create-stamp debian/debhelper-build-stamp @@ -6253,7 +6296,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/pftools-3.2.12' dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/pftools-3.2.12/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/pftools-3.2.12/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pftools-3.2.12/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.12 -B/build/pftools-3.2.12/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -6437,8 +6480,8 @@ dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'pftools' in '../pftools_3.2.12-1_amd64.deb'. dpkg-deb: building package 'pftools-dbgsym' in '../pftools-dbgsym_3.2.12-1_amd64.deb'. +dpkg-deb: building package 'pftools' in '../pftools_3.2.12-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pftools_3.2.12-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pftools_3.2.12-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -6446,12 +6489,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2288667/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1838975 and its subdirectories -I: Current time: Thu May 23 14:34:13 -12 2024 -I: pbuilder-time-stamp: 1716518053 +I: removing directory /srv/workspace/pbuilder/2288667 and its subdirectories +I: Current time: Sat Apr 22 10:23:15 +14 2023 +I: pbuilder-time-stamp: 1682108595