Diff of the two buildlogs: -- --- b1/build.log 2023-04-18 03:57:53.433547913 +0000 +++ b2/build.log 2023-04-18 03:59:19.309736351 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 17 15:56:31 -12 2023 -I: pbuilder-time-stamp: 1681790191 +I: Current time: Tue May 21 00:21:00 +14 2024 +I: pbuilder-time-stamp: 1716200460 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./rsem_1.3.3+dfsg.orig.tar.xz] I: copying [./rsem_1.3.3+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Sep 8 18:07:23 2021 -12 +gpgv: Signature made Thu Sep 9 20:07:23 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,167 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1592906/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 21 00:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5fab91c881fe4e819194908b20e13ae2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1592906' - PS1='# ' - PS2='> ' + INVOCATION_ID=fb598e09e06d4249bfa0d39a72ac47d1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1022595 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D9TncP9b/pbuilderrc_kT02 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D9TncP9b/b1 --logfile b1/build.log rsem_1.3.3+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D9TncP9b/pbuilderrc_qCTX --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D9TncP9b/b2 --logfile b2/build.log --extrapackages usrmerge rsem_1.3.3+dfsg-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1592906/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 May 21 00:21 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -277,7 +309,7 @@ Get: 65 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-2 [348 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libncurses5-dev amd64 6.4-2 [932 B] -Fetched 45.0 MB in 1s (41.3 MB/s) +Fetched 45.0 MB in 0s (98.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -561,8 +593,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/rsem-1.3.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rsem_1.3.3+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/rsem-1.3.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../rsem_1.3.3+dfsg-2_source.changes dpkg-buildpackage: info: source package rsem dpkg-buildpackage: info: source version 1.3.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -572,7 +615,7 @@ debian/rules clean dh clean dh_auto_clean - make -j15 clean + make -j16 clean make[1]: Entering directory '/build/rsem-1.3.3+dfsg' rm -f *.o *~ rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-build-read-index rsem-simulate-reads rsem-parse-alignments rsem-run-em rsem-tbam2gbam rsem-bam2wig rsem-bam2readdepth rsem-get-unique rsem-sam-validator rsem-scan-for-paired-end-reads rsem-run-gibbs rsem-calculate-credibility-intervals cd EBSeq && make clean @@ -593,7 +636,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/rsem-1.3.3+dfsg' dh_auto_build -- BOOST=/usr/include prefix=debian/tmp - make -j15 "INSTALL=install --strip-program=true" BOOST=/usr/include prefix=debian/tmp + make -j16 "INSTALL=install --strip-program=true" BOOST=/usr/include prefix=debian/tmp make[2]: Entering directory '/build/rsem-1.3.3+dfsg' g++ -g -O2 -ffile-prefix-map=/build/rsem-1.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o extractRef.o extractRef.cpp g++ -g -O2 -ffile-prefix-map=/build/rsem-1.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o synthesisRef.o synthesisRef.cpp @@ -623,8 +666,7 @@ sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ -In file included from SamParser.h:13, - from parseIt.cpp:27: +In file included from scanForPairedEndReads.cpp:11: sam_utils.h: In function 'void expand_data_size(bam1_t*)': sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | if (b->m_data < b->l_data) { @@ -634,27 +676,21 @@ sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ -getUnique.cpp: In function 'void output()': -getUnique.cpp:29:59: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 29 | for (size_t i = 0; i < arr.size(); ++i) sam_write1(out, header, arr[i]); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -getUnique.cpp: In function 'int main(int, char**)': -getUnique.cpp:45:22: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 45 | sam_hdr_write(out, header); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from samValidator.cpp:11: sam_utils.h: In function 'void expand_data_size(bam1_t*)': sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ +In file included from SamParser.h:13, + from parseIt.cpp:27: +sam_utils.h: In function 'void expand_data_size(bam1_t*)': +sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 34 | if (b->m_data < b->l_data) { + | ~~~~~~~~~~^~~~~~~~~~~ samValidator.cpp: In function 'bool check_read(bam1_t*, bam_hdr_t*)': samValidator.cpp:28:27: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 28 | for (int i = 0; i < b->core.n_cigar; ++i) { | ~~^~~~~~~~~~~~~~~~~ -BamConverter.h: In constructor 'BamConverter::BamConverter(const char*, const char*, const char*, Transcripts&, int, const std::string&)': -BamConverter.h:70:22: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 70 | sam_hdr_write(out, out_header); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ samValidator.cpp:53:38: warning: format '%d' expects argument of type 'int', but argument 2 has type 'hts_pos_t' {aka 'long int'} [-Wformat=] 53 | printf(" aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ @@ -696,26 +732,14 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hts_pos_t {aka long int} -BamConverter.h: In member function 'void BamConverter::process()': -BamConverter.h:137:29: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | sam_write1(out, out_header, b); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -BamConverter.h:138:43: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 138 | if (isPaired) sam_write1(out, out_header, b2); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -BamConverter.h: In member function 'void BamConverter::writeCollapsedLines()': -BamConverter.h:208:35: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 208 | sam_write1(out, out_header, tmp_b); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -BamConverter.h:212:43: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 212 | sam_write1(out, out_header, tmp_b2); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -o rsem-build-read-index buildReadIndex.o -In file included from scanForPairedEndReads.cpp:11: -sam_utils.h: In function 'void expand_data_size(bam1_t*)': -sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 34 | if (b->m_data < b->l_data) { - | ~~~~~~~~~~^~~~~~~~~~~ +getUnique.cpp: In function 'void output()': +getUnique.cpp:29:59: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 29 | for (size_t i = 0; i < arr.size(); ++i) sam_write1(out, header, arr[i]); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +getUnique.cpp: In function 'int main(int, char**)': +getUnique.cpp:45:22: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 45 | sam_hdr_write(out, header); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~ scanForPairedEndReads.cpp: In function 'int main(int, char**)': scanForPairedEndReads.cpp:66:22: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | sam_hdr_write(out, header); @@ -750,6 +774,25 @@ scanForPairedEndReads.cpp:120:25: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | sam_write1(out, header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +BamConverter.h: In constructor 'BamConverter::BamConverter(const char*, const char*, const char*, Transcripts&, int, const std::string&)': +BamConverter.h:70:22: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 70 | sam_hdr_write(out, out_header); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +BamConverter.h: In member function 'void BamConverter::process()': +BamConverter.h:137:29: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | sam_write1(out, out_header, b); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +BamConverter.h:138:43: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 138 | if (isPaired) sam_write1(out, out_header, b2); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +BamConverter.h: In member function 'void BamConverter::writeCollapsedLines()': +BamConverter.h:208:35: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 208 | sam_write1(out, out_header, tmp_b); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +BamConverter.h:212:43: warning: ignoring return value of 'int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 212 | sam_write1(out, out_header, tmp_b2); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wl,-z,relro -Wl,-z,now -o rsem-build-read-index buildReadIndex.o In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/constants/constants.hpp:11, from /usr/include/boost/math/special_functions/gamma.hpp:24, @@ -757,7 +800,7 @@ from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, - from simulation.cpp:22: + from Gibbs.cpp:15: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ @@ -770,6 +813,18 @@ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ +samValidator.cpp:176:83: warning: 'readlen2' may be used uninitialized [-Wmaybe-uninitialized] + 176 | isValid = (creadlen == readlen && (!ispaired || creadlen2 == readlen2)); + | ~~~~~~~~~~^~~~~~~~~~~ +samValidator.cpp:78:47: note: 'readlen2' was declared here + 78 | int creadlen = 0, readlen, creadlen2, readlen2; + | ^~~~~~~~ +samValidator.cpp:176:83: warning: 'creadlen2' may be used uninitialized [-Wmaybe-uninitialized] + 176 | isValid = (creadlen == readlen && (!ispaired || creadlen2 == readlen2)); + | ~~~~~~~~~~^~~~~~~~~~~ +samValidator.cpp:78:36: note: 'creadlen2' was declared here + 78 | int creadlen = 0, readlen, creadlen2, readlen2; + | ^~~~~~~~~ In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/constants/constants.hpp:11, from /usr/include/boost/math/special_functions/gamma.hpp:24, @@ -777,7 +832,7 @@ from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, - from EM.cpp:28: + from simulation.cpp:22: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ @@ -790,19 +845,6 @@ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ -samValidator.cpp:176:83: warning: 'readlen2' may be used uninitialized [-Wmaybe-uninitialized] - 176 | isValid = (creadlen == readlen && (!ispaired || creadlen2 == readlen2)); - | ~~~~~~~~~~^~~~~~~~~~~ -samValidator.cpp:78:47: note: 'readlen2' was declared here - 78 | int creadlen = 0, readlen, creadlen2, readlen2; - | ^~~~~~~~ -samValidator.cpp:176:83: warning: 'creadlen2' may be used uninitialized [-Wmaybe-uninitialized] - 176 | isValid = (creadlen == readlen && (!ispaired || creadlen2 == readlen2)); - | ~~~~~~~~~~^~~~~~~~~~~ -samValidator.cpp:78:36: note: 'creadlen2' was declared here - 78 | int creadlen = 0, readlen, creadlen2, readlen2; - | ^~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -o rsem-preref preRef.o In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/constants/constants.hpp:11, from /usr/include/boost/math/special_functions/gamma.hpp:24, @@ -810,7 +852,7 @@ from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, - from Gibbs.cpp:15: + from EM.cpp:28: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ @@ -843,15 +885,18 @@ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ +g++ -Wl,-z,relro -Wl,-z,now -o rsem-preref preRef.o +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2wig bam2wig.o wiggle.o -lhts -lz +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2readdepth bam2readdepth.o wiggle.o -lhts -lz g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-get-unique getUnique.o -lhts -lz +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-scan-for-paired-end-reads scanForPairedEndReads.o -lhts -lz +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-sam-validator samValidator.o -lhts -lz In file included from BamWriter.h:14, from EM.cpp:45: sam_utils.h: In function 'void expand_data_size(bam1_t*)': sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2wig bam2wig.o wiggle.o -lhts -lz -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2readdepth bam2readdepth.o wiggle.o -lhts -lz BamWriter.h: In constructor 'BamWriter::BamWriter(const char*, const char*, const char*, Transcripts&, int)': BamWriter.h:70:16: warning: ignoring return value of 'int sam_hdr_write(samFile*, const sam_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | sam_hdr_write(out, out_header); @@ -871,8 +916,6 @@ EM.cpp:635:31: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 635 | system(command); | ~~~~~~^~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-sam-validator samValidator.o -lhts -lz -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-scan-for-paired-end-reads scanForPairedEndReads.o -lhts -lz g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-tbam2gbam tbam2gbam.o SamHeader.o -lhts -lz g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-parse-alignments parseIt.o -lhts -lz g++ -Wl,-z,relro -Wl,-z,now -o rsem-extract-reference-transcripts extractRef.o @@ -997,6 +1040,38 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]': +calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~ +calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~~~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]' at calcCI.cpp:183:10: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]': +calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~ +calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~~~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]' at calcCI.cpp:183:10: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ Gibbs.cpp: In function 'void init()': Gibbs.cpp:214:26: warning: '.countvectors' directive writing 13 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 214 | sprintf(cvsF, "%s.countvectors", imdName); @@ -1029,7 +1104,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]': +calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]': calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ @@ -1037,7 +1112,23 @@ 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]' at calcCI.cpp:183:10: + inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]' at calcCI.cpp:183:10: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]': +calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~ +calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] + 183 | sprintf(inpF, "%s%d", cvsF, i); + | ^~~~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]' at calcCI.cpp:183:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1074,30 +1165,42 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': -utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); +utils.h: In member function 'void PairedEndQModel::estimateFromReads(const char*)': +utils.h:146:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, - inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:146:10, + inlined from 'void PairedEndQModel::estimateFromReads(const char*)' at PairedEndQModel.h:251:23: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]': -calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~ -calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~~~~~ +utils.h: In member function 'void PairedEndQModel::estimateFromReads(const char*)': +utils.h:147:40: warning: '%s' directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] + 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); + | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]' at calcCI.cpp:183:10: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:147:10, + inlined from 'void PairedEndQModel::estimateFromReads(const char*)' at PairedEndQModel.h:251:23: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 10005 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': +utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); + | ^~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, + inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, @@ -1118,67 +1221,65 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void PairedEndQModel::estimateFromReads(const char*)': -utils.h:146:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); +utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': +utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:146:10, - inlined from 'void PairedEndQModel::estimateFromReads(const char*)' at PairedEndQModel.h:251:23: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 30021) into a destination of size 20010 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, + inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void PairedEndQModel::estimateFromReads(const char*)': -utils.h:147:40: warning: '%s' directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] - 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); +utils.h: In member function 'void SingleQModel::estimateFromReads(const char*)': +utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:147:10, - inlined from 'void PairedEndQModel::estimateFromReads(const char*)' at PairedEndQModel.h:251:23: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 10005 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, + inlined from 'void SingleQModel::estimateFromReads(const char*)' at SingleQModel.h:294:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]': -calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~ -calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~~~~~ +g++ -Wl,-z,relro -Wl,-z,now -o rsem-simulate-reads simulation.o +utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': +utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); + | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]' at calcCI.cpp:183:10: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, + inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -calcCI.cpp: In function 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]': -calcCI.cpp:183:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~ -calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] - 183 | sprintf(inpF, "%s%d", cvsF, i); - | ^~~~~~ +utils.h: In member function 'void SingleQModel::estimateFromReads(const char*)': +utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] + 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); + | ^~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]' at calcCI.cpp:183:10: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 10015 bytes into a destination of size 10005 + inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, + inlined from 'void SingleQModel::estimateFromReads(const char*)' at SingleQModel.h:294:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -o rsem-simulate-reads simulation.o +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-calculate-credibility-intervals calcCI.o -lhts +g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-gibbs Gibbs.o -lhts In file included from EM.cpp:47: WriteResults.h: In function 'void writeResultsEM(int, const char*, const char*, Transcripts&, std::vector&, std::vector&, double*, bool)': WriteResults.h:138:28: warning: '.grp' directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] @@ -1248,62 +1349,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': -utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); - | ^~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, - inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void SingleModel::estimateFromReads(const char*)': -utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); - | ^~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, - inlined from 'void SingleModel::estimateFromReads(const char*)' at SingleModel.h:284:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void SingleQModel::estimateFromReads(const char*)': -utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); - | ^~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, - inlined from 'void SingleQModel::estimateFromReads(const char*)' at SingleQModel.h:294:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -utils.h: In member function 'void SingleQModel::estimateFromReads(const char*)': -utils.h:142:40: warning: '%s' directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] - 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); - | ^~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void genReadFileNames(const char*, int, int, int&, char (*)[10005])' at utils.h:142:10, - inlined from 'void SingleQModel::estimateFromReads(const char*)' at SingleQModel.h:294:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 30019) into a destination of size 20010 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ EM.cpp: In function 'void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]': EM.cpp:127:26: warning: '.dat' directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); @@ -1409,8 +1454,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-calculate-credibility-intervals calcCI.o -lhts -g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-gibbs Gibbs.o -lhts EM.cpp: In function 'void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]': EM.cpp:435:45: warning: '.ofg' directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); @@ -1606,7 +1649,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/rsem-1.3.3+dfsg' dh_auto_install -- BOOST=/usr/include prefix="/usr" - make -j15 install DESTDIR=/build/rsem-1.3.3\+dfsg/debian/rsem AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" BOOST=/usr/include prefix=/usr + make -j16 install DESTDIR=/build/rsem-1.3.3\+dfsg/debian/rsem AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" BOOST=/usr/include prefix=/usr make[2]: Entering directory '/build/rsem-1.3.3+dfsg' install --strip-program=true -p rsem-extract-reference-transcripts /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-extract-reference-transcripts ; install --strip-program=true -p rsem-synthesis-reference-transcripts /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-synthesis-reference-transcripts ; install --strip-program=true -p rsem-preref /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-preref ; install --strip-program=true -p rsem-build-read-index /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-build-read-index ; install --strip-program=true -p rsem-simulate-reads /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-simulate-reads ; install --strip-program=true -p rsem-parse-alignments /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-parse-alignments ; install --strip-program=true -p rsem-run-em /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-run-em ; install --strip-program=true -p rsem-tbam2gbam /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-tbam2gbam ; install --strip-program=true -p rsem-bam2wig /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-bam2wig ; install --strip-program=true -p rsem-bam2readdepth /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-bam2readdepth ; install --strip-program=true -p rsem-get-unique /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-get-unique ; install --strip-program=true -p rsem-sam-validator /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-sam-validator ; install --strip-program=true -p rsem-scan-for-paired-end-reads /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-scan-for-paired-end-reads ; install --strip-program=true -p rsem-run-gibbs /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-run-gibbs ; install --strip-program=true -p rsem-calculate-credibility-intervals /build/rsem-1.3.3+dfsg/debian/rsem/usr/bin/rsem-calculate-credibility-intervals ; install: WARNING: ignoring --strip-program option as -s option was not specified @@ -1664,8 +1707,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'rsem' in '../rsem_1.3.3+dfsg-2_amd64.deb'. dpkg-deb: building package 'rsem-dbgsym' in '../rsem-dbgsym_1.3.3+dfsg-2_amd64.deb'. +dpkg-deb: building package 'rsem' in '../rsem_1.3.3+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../rsem_1.3.3+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../rsem_1.3.3+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1673,12 +1716,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1022595/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1592906 and its subdirectories -I: Current time: Mon Apr 17 15:57:53 -12 2023 -I: pbuilder-time-stamp: 1681790273 +I: removing directory /srv/workspace/pbuilder/1022595 and its subdirectories +I: Current time: Tue May 21 00:22:23 +14 2024 +I: pbuilder-time-stamp: 1716200543