Diff of the two buildlogs: -- --- b1/build.log 2023-05-13 09:27:35.729827517 +0000 +++ b2/build.log 2023-05-13 09:52:49.951430648 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jun 14 03:40:46 -12 2024 -I: pbuilder-time-stamp: 1718379646 +I: Current time: Sat May 13 23:27:39 +14 2023 +I: pbuilder-time-stamp: 1683970059 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Nov 23 22:43:29 2022 -12 +gpgv: Signature made Fri Nov 25 00:43:29 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,167 @@ dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2822293/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 13 23:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='14609899eced4b9a965516c03cb17808' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2822293' - PS1='# ' - PS2='> ' + INVOCATION_ID=b73e7a98911b47d8925bf108e2e8c98f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2889908 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/pbuilderrc_lxWe --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/b1 --logfile b1/build.log seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/pbuilderrc_avvr --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/b2 --logfile b2/build.log --extrapackages usrmerge seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2822293/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 13 23:27 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -273,7 +305,7 @@ Get: 64 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] -Fetched 86.3 MB in 5s (18.0 MB/s) +Fetched 86.3 MB in 8s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -551,8 +583,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.1.0.0.git.3011926+ds-4_source.changes +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.1.0.0.git.3011926+ds-4_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.1.0.0.git.3011926+ds-4 dpkg-buildpackage: info: source distribution unstable @@ -605,7 +648,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' dh_auto_build --arch - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -617,10 +660,10 @@ make[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' -[ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o -cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp -[ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o +[ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp +[ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o +cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp [ 60%] Linking CXX static library ../lib/libneedle_lib.a cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 @@ -793,10 +836,10 @@ Do Nothing make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' dh_auto_test -Nseqan-needle-doc - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j16 +/usr/bin/ctest --force-new-ctest-process --verbose -j15 UpdateCTestConfiguration from :/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu @@ -900,8 +943,8 @@ gmake[3]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' gmake[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' -cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. +cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 60 @@ -1270,26 +1313,26 @@ 1: [----------] Global test environment set-up. 1: [----------] 3 tests from count 1: [ RUN ] count.small_example -1: [ OK ] count.small_example (3 ms) +1: [ OK ] count.small_example (2 ms) 1: [ RUN ] count.small_example_paired -1: [ OK ] count.small_example_paired (3 ms) +1: [ OK ] count.small_example_paired (2 ms) 1: [ RUN ] count.small_example_exclude 1: [ OK ] count.small_example_exclude (0 ms) -1: [----------] 3 tests from count (8 ms total) +1: [----------] 3 tests from count (5 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 3 tests from 1 test suite ran. (8 ms total) +1: [==========] 3 tests from 1 test suite ran. (18 ms total) 1: [ PASSED ] 3 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 10 tests from 1 test suite. 2: [----------] Global test environment set-up. 2: [----------] 10 tests from estimate 2: [ RUN ] estimate.small_example -2: [ OK ] estimate.small_example (2 ms) +2: [ OK ] estimate.small_example (19 ms) 2: [ RUN ] estimate.small_example_uncompressed 2: [ OK ] estimate.small_example_uncompressed (0 ms) 2: [ RUN ] estimate.small_example_gene_not_found -2: [ OK ] estimate.small_example_gene_not_found (1 ms) +2: [ OK ] estimate.small_example_gene_not_found (9 ms) 2: [ RUN ] estimate.small_example_different_expressions_per_level 2: [ OK ] estimate.small_example_different_expressions_per_level (0 ms) 2: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1 @@ -1308,11 +1351,11 @@ 3: [ RUN ] ibf.given_expression_thresholds_exclude_file 3: [ OK ] ibf.given_expression_thresholds_exclude_file (0 ms) 3: [ RUN ] ibf.no_given_expression_thresholds -3: [ OK ] ibf.no_given_expression_thresholds (0 ms) +3: [ OK ] ibf.no_given_expression_thresholds (4 ms) 3: [ RUN ] ibf.expression_thresholds_by_genome 3: [ OK ] ibf.expression_thresholds_by_genome (0 ms) 3: [ RUN ] ibf.throws -3: [ OK ] ibf.throws (0 ms) +3: [ OK ] ibf.throws (43 ms) 3: [ RUN ] ibf.given_cutoffs 3: [ OK ] ibf.given_cutoffs (0 ms) 3: [ RUN ] ibf.different_file_sizes @@ -1321,37 +1364,53 @@ 4: [----------] Global test environment set-up. 4: [----------] 4 tests from ibfmin 4: [ RUN ] ibfmin.given_expression_thresholds -4: [ OK ] ibfmin.given_expression_thresholds (0 ms) +4: [ OK ] ibfmin.given_expression_thresholds (4 ms) 4: [ RUN ] ibfmin.no_given_expression_thresholds 4: [ OK ] ibfmin.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibfmin.expression_thresholds_by_genome 4: [ OK ] ibfmin.expression_thresholds_by_genome (1 ms) 4: [ RUN ] ibfmin.different_shape -4: [ OK ] ibfmin.different_shape (2 ms) -4: [----------] 4 tests from ibfmin (5 ms total) +4: [ OK ] ibfmin.different_shape (1 ms) +4: [----------] 4 tests from ibfmin (7 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 4 tests from 1 test suite ran. (5 ms total) +4: [==========] 4 tests from 1 test suite ran. (7 ms total) 4: [ PASSED ] 4 tests. 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 8 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 8 tests from minimiser 5: [ RUN ] minimiser.small_example +5: [ OK ] minimiser.small_example (8 ms) +5: [ RUN ] minimiser.small_example_different_shape +5: [ OK ] minimiser.small_example_different_shape (0 ms) +5: [ RUN ] minimiser.small_example_samplewise +5: [ OK ] minimiser.small_example_samplewise (0 ms) +5: [ RUN ] minimiser.cutoff_by_filesize +5: [ OK ] minimiser.cutoff_by_filesize (0 ms) +5: [ RUN ] minimiser.small_example_two_threads +5: [ OK ] minimiser.small_example_two_threads (22 ms) +5: [ RUN ] minimiser.small_example_include +5: [ OK ] minimiser.small_example_include (0 ms) +5: [ RUN ] minimiser.small_example_exclude +5: [ OK ] minimiser.small_example_exclude (0 ms) +5: [ RUN ] minimiser.small_example_shape +5: [ OK ] minimiser.small_example_shape (0 ms) +5: [----------] 8 tests from minimiser (35 ms total) +5: +5: [----------] Global test environment tear-down +5: [==========] 8 tests from 1 test suite ran. (43 ms total) +5: [ PASSED ] 8 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 2 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 2 tests from needle_options_test 6: [ RUN ] needle_options_test.no_options -6: [ OK ] needle_options_test.no_options (9 ms) -6: [ RUN ] needle_options_test.fail_no_argument 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 19 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 19 tests from ibf_options_test 7: [ RUN ] ibf_options_test.ibf_no_options -7: [ OK ] ibf_options_test.ibf_no_options (7 ms) -7: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 8 tests from 1 test suite. 8: [----------] Global test environment set-up. @@ -1362,162 +1421,146 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from estimate_options_test 9: [ RUN ] estimate_options_test.no_options - 1/10 Test #1: test/api/count_test ............... Passed 0.04 sec - 2/10 Test #4: test/api/ibfmin_test .............. Passed 0.03 sec -8: [ OK ] minimiser_options_test.no_options (8 ms) -8: [ RUN ] minimiser_options_test.fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 5 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 5 tests from count_options_test 10: [ RUN ] count_options_test.no_options -5: [ OK ] minimiser.small_example (11 ms) -5: [ RUN ] minimiser.small_example_different_shape -5: [ OK ] minimiser.small_example_different_shape (1 ms) -5: [ RUN ] minimiser.small_example_samplewise -6: [ OK ] needle_options_test.fail_no_argument (8 ms) -6: [----------] 2 tests from needle_options_test (17 ms total) + 1/10 Test #1: test/api/count_test ............... Passed 0.20 sec + 2/10 Test #4: test/api/ibfmin_test .............. Passed 0.21 sec + 3/10 Test #5: test/api/minimiser_test ........... Passed 0.19 sec +6: [ OK ] needle_options_test.no_options (303 ms) +6: [ RUN ] needle_options_test.fail_no_argument +8: [ OK ] minimiser_options_test.no_options (281 ms) +8: [ RUN ] minimiser_options_test.fail_no_argument +9: [ OK ] estimate_options_test.no_options (252 ms) +9: [ RUN ] estimate_options_test.fail_no_argument +10: [ OK ] count_options_test.no_options (237 ms) +10: [ RUN ] count_options_test.fail_no_argument +7: [ OK ] ibf_options_test.ibf_no_options (295 ms) +7: [ RUN ] ibf_options_test.ibf_fail_no_argument +6: [ OK ] needle_options_test.fail_no_argument (50 ms) +6: [----------] 2 tests from needle_options_test (354 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 2 tests from 1 test suite ran. (17 ms total) +6: [==========] 2 tests from 1 test suite ran. (354 ms total) 6: [ PASSED ] 2 tests. - 3/10 Test #6: test/cli/needle_options_test ...... Passed 0.03 sec -5: [ OK ] minimiser.small_example_samplewise (2 ms) -5: [ RUN ] minimiser.cutoff_by_filesize -5: [ OK ] minimiser.cutoff_by_filesize (0 ms) -5: [ RUN ] minimiser.small_example_two_threads -5: [ OK ] minimiser.small_example_two_threads (1 ms) -5: [ RUN ] minimiser.small_example_include -7: [ OK ] ibf_options_test.ibf_fail_no_argument (16 ms) + 4/10 Test #6: test/cli/needle_options_test ...... Passed 0.37 sec +7: [ OK ] ibf_options_test.ibf_fail_no_argument (78 ms) 7: [ RUN ] ibf_options_test.ibf_fail_contradiction -5: [ OK ] minimiser.small_example_include (0 ms) -5: [ RUN ] minimiser.small_example_exclude -5: [ OK ] minimiser.small_example_exclude (0 ms) -5: [ RUN ] minimiser.small_example_shape -5: [ OK ] minimiser.small_example_shape (0 ms) -5: [----------] 8 tests from minimiser (21 ms total) -5: -5: [----------] Global test environment tear-down -5: [==========] 8 tests from 1 test suite ran. (21 ms total) -5: [ PASSED ] 8 tests. -8: [ OK ] minimiser_options_test.fail_no_argument (11 ms) +8: [ OK ] minimiser_options_test.fail_no_argument (86 ms) 8: [ RUN ] minimiser_options_test.with_arguments - 4/10 Test #5: test/api/minimiser_test ........... Passed 0.04 sec -9: [ OK ] estimate_options_test.no_options (18 ms) -9: [ RUN ] estimate_options_test.fail_no_argument -10: [ OK ] count_options_test.no_options (13 ms) -10: [ RUN ] count_options_test.fail_no_argument -9: [ OK ] estimate_options_test.fail_no_argument (6 ms) +9: [ OK ] estimate_options_test.fail_no_argument (88 ms) 9: [ RUN ] estimate_options_test.with_argument -7: [ OK ] ibf_options_test.ibf_fail_contradiction (12 ms) -7: [ RUN ] ibf_options_test.ibf_fail_contradiction2 -10: [ OK ] count_options_test.fail_no_argument (9 ms) +10: [ OK ] count_options_test.fail_no_argument (88 ms) 10: [ RUN ] count_options_test.with_arguments -7: [ OK ] ibf_options_test.ibf_fail_contradiction2 (15 ms) +7: [ OK ] ibf_options_test.ibf_fail_contradiction (53 ms) +7: [ RUN ] ibf_options_test.ibf_fail_contradiction2 +7: [ OK ] ibf_options_test.ibf_fail_contradiction2 (24 ms) 7: [ RUN ] ibf_options_test.ibf_fail_no_fpr -8: [ OK ] minimiser_options_test.with_arguments (25 ms) +7: [ OK ] ibf_options_test.ibf_fail_no_fpr (18 ms) +7: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs +8: [ OK ] minimiser_options_test.with_arguments (104 ms) 8: [ RUN ] minimiser_options_test.cutoff -10: [ OK ] count_options_test.with_arguments (14 ms) +10: [ OK ] count_options_test.with_arguments (103 ms) 10: [ RUN ] count_options_test.multithreads -8: [ OK ] minimiser_options_test.cutoff (16 ms) +7: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (24 ms) +7: [ RUN ] ibf_options_test.ibf_with_argument +8: [ OK ] minimiser_options_test.cutoff (24 ms) 8: [ RUN ] minimiser_options_test.multiple_sample -10: [ OK ] count_options_test.multithreads (18 ms) +10: [ OK ] count_options_test.multithreads (34 ms) 10: [ RUN ] count_options_test.paired -7: [ OK ] ibf_options_test.ibf_fail_no_fpr (28 ms) -7: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs -10: [ OK ] count_options_test.paired (15 ms) -10: [----------] 5 tests from count_options_test (71 ms total) +8: [ OK ] minimiser_options_test.multiple_sample (27 ms) +8: [ RUN ] minimiser_options_test.multithreads +10: [ OK ] count_options_test.paired (41 ms) +10: [----------] 5 tests from count_options_test (505 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 5 tests from 1 test suite ran. (71 ms total) +10: [==========] 5 tests from 1 test suite ran. (505 ms total) 10: [ PASSED ] 5 tests. -8: [ OK ] minimiser_options_test.multiple_sample (19 ms) -8: [ RUN ] minimiser_options_test.multithreads - 5/10 Test #10: test/cli/count_options_test ....... Passed 0.08 sec -7: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (10 ms) -7: [ RUN ] ibf_options_test.ibf_with_argument -8: [ OK ] minimiser_options_test.multithreads (20 ms) + 5/10 Test #10: test/cli/count_options_test ....... Passed 0.52 sec +8: [ OK ] minimiser_options_test.multithreads (40 ms) 8: [ RUN ] minimiser_options_test.paired -8: [ OK ] minimiser_options_test.paired (16 ms) +8: [ OK ] minimiser_options_test.paired (19 ms) 8: [ RUN ] minimiser_options_test.invalid_argument -8: [ OK ] minimiser_options_test.invalid_argument (8 ms) -8: [----------] 8 tests from minimiser_options_test (127 ms total) +8: [ OK ] minimiser_options_test.invalid_argument (21 ms) +8: [----------] 8 tests from minimiser_options_test (605 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 8 tests from 1 test suite ran. (127 ms total) +8: [==========] 8 tests from 1 test suite ran. (605 ms total) 8: [ PASSED ] 8 tests. - 6/10 Test #8: test/cli/minimiser_options_test ... Passed 0.13 sec -3: [ OK ] ibf.different_file_sizes (6113 ms) -3: [----------] 8 tests from ibf (6118 ms total) + 6/10 Test #8: test/cli/minimiser_options_test ... Passed 0.62 sec +3: [ OK ] ibf.different_file_sizes (11398 ms) +3: [----------] 8 tests from ibf (11451 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 8 tests from 1 test suite ran. (6118 ms total) +3: [==========] 8 tests from 1 test suite ran. (11452 ms total) 3: [ PASSED ] 8 tests. - 7/10 Test #3: test/api/ibf_test ................. Passed 6.12 sec -2: [ OK ] estimate.example (10319 ms) -2: [ RUN ] estimate.example_multiple_threads -7: [ OK ] ibf_options_test.ibf_with_argument (10582 ms) + 7/10 Test #3: test/api/ibf_test ................. Passed 11.47 sec +7: [ OK ] ibf_options_test.ibf_with_argument (39324 ms) 7: [ RUN ] ibf_options_test.ibf_with_argument_with_options -9: [ OK ] estimate_options_test.with_argument (15604 ms) +9: [ OK ] estimate_options_test.with_argument (43911 ms) 9: [ RUN ] estimate_options_test.with_argument_normalization_method -2: [ OK ] estimate.example_multiple_threads (14307 ms) -2: [ RUN ] estimate.example_different_expressions_per_level -7: [ OK ] ibf_options_test.ibf_with_argument_with_options (14470 ms) +7: [ OK ] ibf_options_test.ibf_with_argument_with_options (20901 ms) 7: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape -2: [ OK ] estimate.example_different_expressions_per_level (2434 ms) -2: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads -2: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (2273 ms) -2: [----------] 10 tests from estimate (29342 ms total) -2: -2: [----------] Global test environment tear-down -2: [==========] 10 tests from 1 test suite ran. (29343 ms total) -2: [ PASSED ] 10 tests. - 8/10 Test #2: test/api/estimate_test ............ Passed 29.35 sec -9: [ OK ] estimate_options_test.with_argument_normalization_method (16516 ms) +9: [ OK ] estimate_options_test.with_argument_normalization_method (36116 ms) 9: [ RUN ] estimate_options_test.with_argument_out -7: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (10936 ms) +7: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (33599 ms) 7: [ RUN ] ibf_options_test.ibfmin_no_options -7: [ OK ] ibf_options_test.ibfmin_no_options (6 ms) +7: [ OK ] ibf_options_test.ibfmin_no_options (21 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_no_argument -7: [ OK ] ibf_options_test.ibfmin_fail_no_argument (5 ms) +7: [ OK ] ibf_options_test.ibfmin_fail_no_argument (7 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_contradiction -7: [ OK ] ibf_options_test.ibfmin_fail_contradiction (5 ms) +7: [ OK ] ibf_options_test.ibfmin_fail_contradiction (19 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 -7: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (5 ms) +7: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (8 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr -7: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (6 ms) +7: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (7 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs -7: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (5 ms) +7: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (7 ms) 7: [ RUN ] ibf_options_test.ibfmin_with_argument -7: [ OK ] ibf_options_test.ibfmin_with_argument (22 ms) +7: [ OK ] ibf_options_test.ibfmin_with_argument (7 ms) 7: [ RUN ] ibf_options_test.compressed -7: [ OK ] ibf_options_test.compressed (7 ms) +7: [ OK ] ibf_options_test.compressed (6 ms) 7: [ RUN ] ibf_options_test.more_hash_functions -7: [ OK ] ibf_options_test.more_hash_functions (8 ms) +7: [ OK ] ibf_options_test.more_hash_functions (7 ms) 7: [ RUN ] ibf_options_test.expression_thresholds -7: [ OK ] ibf_options_test.expression_thresholds (6 ms) -7: [----------] 19 tests from ibf_options_test (36161 ms total) +7: [ OK ] ibf_options_test.expression_thresholds (7 ms) +7: [----------] 19 tests from ibf_options_test (94420 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 19 tests from 1 test suite ran. (36161 ms total) +7: [==========] 19 tests from 1 test suite ran. (94421 ms total) 7: [ PASSED ] 19 tests. - 9/10 Test #7: test/cli/ibf_options_test ......... Passed 36.17 sec -9: [ OK ] estimate_options_test.with_argument_out (11369 ms) -9: [----------] 5 tests from estimate_options_test (43515 ms total) + 8/10 Test #7: test/cli/ibf_options_test ......... Passed 94.50 sec +9: [ OK ] estimate_options_test.with_argument_out (23663 ms) +9: [----------] 5 tests from estimate_options_test (104032 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 5 tests from 1 test suite ran. (43515 ms total) +9: [==========] 5 tests from 1 test suite ran. (104032 ms total) 9: [ PASSED ] 5 tests. -10/10 Test #9: test/cli/estimate_options_test .... Passed 43.52 sec + 9/10 Test #9: test/cli/estimate_options_test .... Passed 104.06 sec +2: [ OK ] estimate.example (212651 ms) +2: [ RUN ] estimate.example_multiple_threads +2: [ OK ] estimate.example_multiple_threads (34717 ms) +2: [ RUN ] estimate.example_different_expressions_per_level +2: [ OK ] estimate.example_different_expressions_per_level (4231 ms) +2: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads +2: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (2667 ms) +2: [----------] 10 tests from estimate (254316 ms total) +2: +2: [----------] Global test environment tear-down +2: [==========] 10 tests from 1 test suite ran. (254316 ms total) +2: [ PASSED ] 10 tests. +10/10 Test #2: test/api/estimate_test ............ Passed 254.33 sec 100% tests passed, 0 tests failed out of 10 -Total Test time (real) = 259.90 sec +Total Test time (real) = 865.57 sec make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/seqan-needle-1.0.1.0.0.git.3011926\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/seqan-needle-1.0.1.0.0.git.3011926\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1559,12 +1602,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2889908/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2822293 and its subdirectories -I: Current time: Fri Jun 14 03:50:36 -12 2024 -I: pbuilder-time-stamp: 1718380236 +I: removing directory /srv/workspace/pbuilder/2889908 and its subdirectories +I: Current time: Sat May 13 23:52:47 +14 2023 +I: pbuilder-time-stamp: 1683971567