Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 21:04:46.278014519 +0000 +++ b2/build.log 2024-01-07 21:05:52.026959195 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 8 15:26:51 -12 2025 -I: pbuilder-time-stamp: 1739071611 +I: Current time: Mon Jan 8 11:04:49 +14 2024 +I: pbuilder-time-stamp: 1704661489 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -26,49 +26,81 @@ dpkg-source: info: unpacking bppsuite_2.4.1-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/777946/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 7 21:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c82614f6aa5f4a6e914505cf3e145056' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='777946' - PS1='# ' - PS2='> ' + INVOCATION_ID=acf55c8623cc41b58059845447b0b8b7 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=337027 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XrNSdary/pbuilderrc_uLUN --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XrNSdary/b1 --logfile b1/build.log bppsuite_2.4.1-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XrNSdary/pbuilderrc_XrFo --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XrNSdary/b2 --logfile b2/build.log bppsuite_2.4.1-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash @@ -126,15 +158,15 @@ -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts + -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 7 21:04 sh -> /bin/bash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar - -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile + -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server @@ -154,7 +186,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/777946/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -269,7 +301,7 @@ Get: 67 http://deb.debian.org/debian bookworm/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 tex-common all 6.18 [32.5 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 texinfo arm64 6.8-6+b1 [1808 kB] -Fetched 40.9 MB in 1s (32.5 MB/s) +Fetched 40.9 MB in 0s (144 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) @@ -570,7 +602,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-6_source.changes +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-6_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-6 dpkg-buildpackage: info: source distribution unstable @@ -644,31 +680,31 @@ make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' @@ -676,71 +712,71 @@ cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make 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bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -MD -MT bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -MF CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o.d -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPopStats.cpp -[ 34%] Linking CXX executable bppconsense -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -MD -MT bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -MF CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o.d -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp +[ 34%] Linking CXX executable bppalnscore +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 34%] Built target bppconsense +[ 34%] Built target bppalnscore make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/doc /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/doc /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= @@ -749,11 +785,10 @@ make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 36%] Generating info page cd 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/build/reproducible-path/bppsuite-2.4.1/man/bppml.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppml.1.gz -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 60%] Compressing manpage bpppars.1 -[ 60%] Built target info +[ 57%] Compressing manpage bpppars.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppars.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bpppars.1.gz -[ 63%] Compressing manpage bpppopstats.1 +[ 60%] Compressing manpage bpppopstats.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppopstats.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bpppopstats.1.gz -[ 65%] Compressing manpage bppreroot.1 +[ 63%] Compressing manpage bppreroot.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppreroot.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppreroot.1.gz -[ 68%] Compressing manpage bppseqgen.1 +[ 65%] Compressing manpage bppseqgen.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppseqgen.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppseqgen.1.gz -[ 71%] Compressing manpage bppseqman.1 +[ 68%] Compressing manpage bppseqman.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppseqman.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppseqman.1.gz -[ 73%] Compressing manpage bpptreedraw.1 +[ 71%] Compressing manpage bpptreedraw.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpptreedraw.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bpptreedraw.1.gz make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 73%] Built target man +[ 71%] Built target man +[ 73%] Linking CXX executable bppconsense +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 73%] Built target bppconsense [ 76%] Linking CXX executable bppseqman cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 78%] Linking CXX executable bppreroot +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 78%] Built target bppseqman make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 76%] Built target bppseqman -[ 78%] Linking CXX executable bpptreedraw +[ 78%] Built target bppreroot +[ 81%] Linking CXX executable bpptreedraw cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 81%] Linking CXX executable bppreroot -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 81%] Built target bpptreedraw -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 81%] Built target bppreroot [ 84%] Linking CXX executable bpppars cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -820,16 +856,16 @@ /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 89%] Built target bppancestor -[ 92%] Linking CXX executable bppdist -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 94%] Linking CXX executable bppseqgen +[ 92%] Linking CXX executable bppseqgen cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 94%] Built target bppdist +[ 92%] Built target bppseqgen +[ 94%] Linking CXX executable bppdist +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 94%] Built target bppseqgen +[ 94%] Built target bppdist [ 97%] Linking CXX executable bppml cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -905,9 +941,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-6_arm64.deb'. dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-6_arm64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-6_all.deb'. -dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-6_arm64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -915,12 +951,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/337027/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/777946 and its subdirectories -I: Current time: Sat Feb 8 15:27:44 -12 2025 -I: pbuilder-time-stamp: 1739071664 +I: removing directory /srv/workspace/pbuilder/337027 and its subdirectories +I: Current time: Mon Jan 8 11:05:50 +14 2024 +I: pbuilder-time-stamp: 1704661550