Diff of the two buildlogs:
--
--- b1/build.log 2023-04-08 17:02:26.731097493 +0000
+++ b2/build.log 2023-04-08 17:07:34.420882683 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Apr 8 04:58:31 -12 2023
-I: pbuilder-time-stamp: 1680973111
+I: Current time: Sat May 11 13:25:30 +14 2024
+I: pbuilder-time-stamp: 1715383530
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./ciftools-java_4.0.5.orig.tar.gz]
I: copying [./ciftools-java_4.0.5-1.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Thu Jan 12 23:24:33 2023 -12
+gpgv: Signature made Sat Jan 14 01:24:33 2023 +14
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
@@ -28,11 +28,20 @@
dpkg-source: info: applying deactivate_tests_using_network.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/17674/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink15-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME='pbuilder2'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
@@ -42,38 +51,38 @@
IFS='
'
LANG='C'
- LANGUAGE='en_US:en'
+ LANGUAGE='nl_BE:nl'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
+ PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
- PPID='17674'
+ PPID='5534'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/pbuilderrc_qvIJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/b1 --logfile b1/build.log ciftools-java_4.0.5-1.dsc'
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/pbuilderrc_75EE --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOD6BTXM/b2 --logfile b2/build.log --extrapackages usrmerge ciftools-java_4.0.5-1.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
+ TZ='/usr/share/zoneinfo/Etc/GMT-14'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
- Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
+ Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Apr 6 22:26 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/17674/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 May 10 06:47 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -377,7 +386,7 @@
Get: 254 http://deb.debian.org/debian bookworm/main arm64 maven all 3.8.7-1 [18.9 kB]
Get: 255 http://deb.debian.org/debian bookworm/main arm64 maven-repo-helper all 1.11 [142 kB]
Get: 256 http://deb.debian.org/debian bookworm/main arm64 maven-debian-helper all 2.6.2 [108 kB]
-Fetched 362 MB in 28s (12.8 MB/s)
+Fetched 362 MB in 35s (10.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:arm64.
(Reading database ...
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19616 files and directories currently installed.)
@@ -1598,8 +1607,17 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/ciftools-java-4.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ciftools-java_4.0.5-1_source.changes
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/A99_set_merged_usr finished
+hostname: Temporary failure in name resolution
+I: Running cd /build/ciftools-java-4.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ciftools-java_4.0.5-1_source.changes
dpkg-buildpackage: info: source package ciftools-java
dpkg-buildpackage: info: source version 4.0.5-1
dpkg-buildpackage: info: source distribution unstable
@@ -1656,8 +1674,8 @@
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
-[INFO] Total time: 01:02 min
-[INFO] Finished at: 2023-04-08T05:01:13-12:00
+[INFO] Total time: 01:16 min
+[INFO] Finished at: 2024-05-11T13:29:13+14:00
[INFO] ------------------------------------------------------------------------
[0m[0m dh_auto_test
/usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/ciftools-java-4.0.5 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/ciftools-java-4.0.5/debian -Dmaven.repo.local=/build/ciftools-java-4.0.5/debian/maven-repo --batch-mode test
@@ -1688,19 +1706,19 @@
[INFO] T E S T S
[INFO] -------------------------------------------------------
[INFO] Running org.rcsb.cif.IntegrationTest
-[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 10.842 s - in org.rcsb.cif.IntegrationTest
+[WARNING] Tests run: 14, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 11.642 s - in org.rcsb.cif.IntegrationTest
[INFO] Running org.rcsb.cif.DemoTest
-[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0 s - in org.rcsb.cif.DemoTest
+[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in org.rcsb.cif.DemoTest
[INFO] Running org.rcsb.cif.WriterTest
-[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.768 s - in org.rcsb.cif.WriterTest
+[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.628 s - in org.rcsb.cif.WriterTest
[INFO] Running org.rcsb.cif.SchemaValidationTest
observed exception as expected: org.rcsb.cif.SchemaMismatchException: CIF_CORE schema should contain exclusively flat column names - format: category_name_column_name
observed exception as expected: org.rcsb.cif.SchemaMismatchException: MMCIF schema should not contain flat column names - format: category_name.column_name
observed exception as expected: org.rcsb.cif.EmptyColumnException: anonymous column is undefined
observed exception as expected: org.rcsb.cif.EmptyColumnException: column length_a is undefined
-[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.633 s - in org.rcsb.cif.SchemaValidationTest
+[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.53 s - in org.rcsb.cif.SchemaValidationTest
[INFO] Running org.rcsb.cif.CifOptionsTest
-[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 3.729 s - in org.rcsb.cif.CifOptionsTest
+[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 2.653 s - in org.rcsb.cif.CifOptionsTest
[INFO] Running org.rcsb.cif.FootprintTest
mismatch in column _citation.pdbx_database_id_PubMed
5,2,[Delta, ByteArray] vs 5,3,[Delta, RunLength, ByteArray]
@@ -1746,7 +1764,7 @@
1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray]
mismatch in column _atom_site.pdbx_PDB_model_num
1405,4,[Delta, RunLength, IntegerPacking, ByteArray] vs 1405,3,[RunLength, IntegerPacking, ByteArray]
-[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.333 s - in org.rcsb.cif.FootprintTest
+[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.276 s - in org.rcsb.cif.FootprintTest
[INFO] Running org.rcsb.cif.NonMmcifFormatTest
database_code_depnum_ccdc_archive 1
database_code_CSD 1
@@ -1786,29 +1804,29 @@
atom_site_fract_x 30
atom_site_fract_y 30
atom_site_fract_z 30
-[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 s - in org.rcsb.cif.NonMmcifFormatTest
+[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.068 s - in org.rcsb.cif.NonMmcifFormatTest
[INFO] Running org.rcsb.cif.CaseSensitivityTest
-[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.116 s - in org.rcsb.cif.CaseSensitivityTest
+[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.136 s - in org.rcsb.cif.CaseSensitivityTest
[INFO] Running org.rcsb.cif.ReaderTest
-[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.911 s - in org.rcsb.cif.ReaderTest
+[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.776 s - in org.rcsb.cif.ReaderTest
[INFO] Running org.rcsb.cif.binary.codec.DeltaCodecTest
-[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.rcsb.cif.binary.codec.DeltaCodecTest
+[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.rcsb.cif.binary.codec.DeltaCodecTest
[INFO] Running org.rcsb.cif.binary.codec.FixedPointCodecTest
-[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.rcsb.cif.binary.codec.FixedPointCodecTest
+[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.FixedPointCodecTest
[INFO] Running org.rcsb.cif.binary.codec.StringArrayCodecTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in org.rcsb.cif.binary.codec.StringArrayCodecTest
[INFO] Running org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest
-[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest
+[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.rcsb.cif.binary.codec.IntervalQuantizationCodecTest
[INFO] Running org.rcsb.cif.binary.codec.ByteArrayCodecTest
-[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest
+[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 s - in org.rcsb.cif.binary.codec.ByteArrayCodecTest
[INFO] Running org.rcsb.cif.binary.codec.RunLengthCodecTest
-[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest
+[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.RunLengthCodecTest
[INFO] Running org.rcsb.cif.binary.codec.IntegerPackingCodecTest
-[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.binary.codec.IntegerPackingCodecTest
+[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.rcsb.cif.binary.codec.IntegerPackingCodecTest
[INFO] Running org.rcsb.cif.binary.codec.MessagePackCodecTest
-[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.054 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest
+[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 s - in org.rcsb.cif.binary.codec.MessagePackCodecTest
[INFO] Running org.rcsb.cif.TestHelper
-[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.rcsb.cif.TestHelper
+[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.rcsb.cif.TestHelper
[INFO]
[INFO] Results:
[INFO]
@@ -1817,8 +1835,8 @@
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
-[INFO] Total time: 34.280 s
-[INFO] Finished at: 2023-04-08T05:01:52-12:00
+[INFO] Total time: 34.261 s
+[INFO] Finished at: 2024-05-11T13:29:53+14:00
[INFO] ------------------------------------------------------------------------
[0m[0m create-stamp debian/debhelper-build-stamp
dh_prep
@@ -1841,8 +1859,8 @@
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
-[INFO] Total time: 1.540 s
-[INFO] Finished at: 2023-04-08T05:01:58-12:00
+[INFO] Total time: 2.260 s
+[INFO] Finished at: 2024-05-11T13:30:02+14:00
[INFO] ------------------------------------------------------------------------
[0m[0m mh_resolve_dependencies --non-interactive --offline --build -plibciftools-java --base-directory=/build/ciftools-java-4.0.5 --non-explore
Analysing pom.xml...
@@ -1875,12 +1893,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/5534/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/17674 and its subdirectories
-I: Current time: Sat Apr 8 05:02:25 -12 2023
-I: pbuilder-time-stamp: 1680973345
+I: removing directory /srv/workspace/pbuilder/5534 and its subdirectories
+I: Current time: Sat May 11 13:30:33 +14 2024
+I: pbuilder-time-stamp: 1715383833