Diff of the two buildlogs: -- --- b1/build.log 2023-05-06 00:06:22.081987847 +0000 +++ b2/build.log 2023-05-06 00:08:10.709226118 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 6 18:26:14 -12 2024 -I: pbuilder-time-stamp: 1717741574 +I: Current time: Sat May 6 14:06:26 +14 2023 +I: pbuilder-time-stamp: 1683331586 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./golang-github-biogo-hts_1.4.4+dfsg1.orig.tar.xz] I: copying [./golang-github-biogo-hts_1.4.4+dfsg1-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Aug 20 23:55:30 2022 -12 +gpgv: Signature made Mon Aug 22 01:55:30 2022 +14 gpgv: using EDDSA key 9185D4F57767AEEE6C55D41E7F44FA25EA5514CB gpgv: issuer "zhsj@debian.org" gpgv: Can't check signature: No public key @@ -30,52 +30,84 @@ dpkg-source: info: applying 0003-Skip-list-example-test.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23251/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 6 14:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23251' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3005 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z4ISqK9I/pbuilderrc_pjdV --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z4ISqK9I/b1 --logfile b1/build.log golang-github-biogo-hts_1.4.4+dfsg1-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z4ISqK9I/pbuilderrc_3yYX --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z4ISqK9I/b2 --logfile b2/build.log --extrapackages usrmerge golang-github-biogo-hts_1.4.4+dfsg1-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink9-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 4 05:33 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/23251/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 6 00:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -162,7 +194,7 @@ Get: 41 http://deb.debian.org/debian bookworm/main arm64 golang-github-kr-pretty-dev all 0.3.0-1 [14.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] -Fetched 93.9 MB in 2s (47.0 MB/s) +Fetched 93.9 MB in 2s (60.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -348,8 +380,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/golang-github-biogo-hts-1.4.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.4+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/golang-github-biogo-hts-1.4.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.4+dfsg1-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-hts dpkg-buildpackage: info: source version 1.4.4+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -371,16 +412,16 @@ internal/goarch internal/unsafeheader internal/goexperiment -internal/goos internal/race -internal/cpu -sync/atomic runtime/internal/syscall -unicode -unicode/utf8 -internal/itoa +sync/atomic +internal/goos internal/abi +internal/cpu runtime/internal/math +unicode/utf8 +unicode +internal/itoa runtime/internal/sys math/bits github.com/ulikunitz/xz/internal/hash @@ -390,33 +431,33 @@ github.com/biogo/hts/cram/encoding/ltf8 math runtime -internal/reflectlite sync +internal/reflectlite internal/testlog errors sort internal/oserror -io -path internal/safefilepath +path +io strconv syscall container/heap +bytes strings hash -bytes hash/crc32 reflect bufio compress/bzip2 internal/syscall/unix -internal/syscall/execenv time +internal/syscall/execenv internal/poll io/fs +os internal/fmtsort encoding/binary -os io/ioutil fmt encoding/hex @@ -428,103 +469,103 @@ github.com/ulikunitz/xz/lzma compress/gzip github.com/biogo/hts/bgzf -github.com/biogo/hts/bgzf/index github.com/biogo/hts/bgzf/cache +github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal github.com/biogo/hts/csi -github.com/biogo/hts/sam github.com/biogo/hts/tabix -github.com/biogo/hts/bam +github.com/biogo/hts/sam github.com/biogo/hts/cram +github.com/biogo/hts/bam dh_auto_test -O--buildsystem=golang cd obj-aarch64-linux-gnu && go test -vet=off -v -p 8 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix === RUN Test OK: 15 passed ---- PASS: Test (0.46s) +--- PASS: Test (0.44s) === RUN TestFuzzCrashers bam_test.go:2486: run out of memory --- SKIP: TestFuzzCrashers (0.00s) === RUN TestMerger ---- PASS: TestMerger (0.53s) +--- PASS: TestMerger (0.38s) PASS -ok github.com/biogo/hts/bam 1.018s +ok github.com/biogo/hts/bam 0.834s === RUN TestEmpty ---- PASS: TestEmpty (0.08s) +--- PASS: TestEmpty (0.00s) === RUN TestEOF --- PASS: TestEOF (0.00s) === RUN TestRoundTrip ---- PASS: TestRoundTrip (0.03s) +--- PASS: TestRoundTrip (0.06s) === RUN TestRoundTripMulti ---- PASS: TestRoundTripMulti (0.12s) +--- PASS: TestRoundTripMulti (0.02s) === RUN TestHeaderIssue57 --- PASS: TestHeaderIssue57 (0.00s) === RUN TestRoundTripMultiSeek ---- PASS: TestRoundTripMultiSeek (0.07s) +--- PASS: TestRoundTripMultiSeek (0.01s) === RUN TestSeekErrorDeadlock --- PASS: TestSeekErrorDeadlock (0.00s) === RUN TestSeekFast ---- PASS: TestSeekFast (0.61s) +--- PASS: TestSeekFast (0.14s) === RUN TestCache ---- PASS: TestCache (2.49s) +--- PASS: TestCache (0.70s) === RUN TestBlocked ---- PASS: TestBlocked (0.01s) +--- PASS: TestBlocked (0.02s) === RUN TestFuzzCrashers ---- PASS: TestFuzzCrashers (0.03s) +--- PASS: TestFuzzCrashers (0.00s) === RUN TestZeroNonZero --- PASS: TestZeroNonZero (0.01s) === RUN TestWriteByteCount ---- PASS: TestWriteByteCount (0.07s) +--- PASS: TestWriteByteCount (0.02s) === RUN TestSeekCacheReadahead --- PASS: TestSeekCacheReadahead (0.10s) PASS -ok github.com/biogo/hts/bgzf 3.677s +ok github.com/biogo/hts/bgzf 1.113s ? github.com/biogo/hts/bgzf/cache [no test files] === RUN Test OK: 3 passed ---- PASS: Test (0.28s) +--- PASS: Test (0.15s) PASS -ok github.com/biogo/hts/bgzf/index 0.360s +ok github.com/biogo/hts/bgzf/index 0.168s ? github.com/biogo/hts/cram [no test files] === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestKnownValues --- PASS: TestKnownValues (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/itf8 0.117s +ok github.com/biogo/hts/cram/encoding/itf8 0.076s === RUN TestInt64RoundTrip --- PASS: TestInt64RoundTrip (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/ltf8 0.155s +ok github.com/biogo/hts/cram/encoding/ltf8 0.049s === RUN Test OK: 3 passed --- PASS: Test (0.02s) PASS -ok github.com/biogo/hts/csi 0.038s +ok github.com/biogo/hts/csi 0.027s === RUN TestNewIndex --- PASS: TestNewIndex (0.00s) === RUN TestReadFrom ---- PASS: TestReadFrom (0.02s) +--- PASS: TestReadFrom (0.00s) === RUN TestWriteTo --- PASS: TestWriteTo (0.00s) === RUN TestFile --- PASS: TestFile (0.00s) PASS -ok github.com/biogo/hts/fai 0.075s +ok github.com/biogo/hts/fai 0.031s ? github.com/biogo/hts/internal [no test files] === RUN Test OK: 20 passed ---- PASS: Test (0.06s) +--- PASS: Test (0.09s) === RUN TestSeqAt --- PASS: TestSeqAt (0.00s) === RUN ExampleConsume --- PASS: ExampleConsume (0.00s) PASS -ok github.com/biogo/hts/sam 0.080s +ok github.com/biogo/hts/sam 0.103s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/hts/tabix 0.039s +ok github.com/biogo/hts/tabix 0.030s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -552,12 +593,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3005/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23251 and its subdirectories -I: Current time: Thu Jun 6 18:29:20 -12 2024 -I: pbuilder-time-stamp: 1717741760 +I: removing directory /srv/workspace/pbuilder/3005 and its subdirectories +I: Current time: Sat May 6 14:08:09 +14 2023 +I: pbuilder-time-stamp: 1683331689