Diff of the two buildlogs:
--
--- b1/build.log 2023-04-12 12:29:53.227502910 +0000
+++ b2/build.log 2023-04-12 12:52:18.357903962 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Tue Apr 11 23:56:28 -12 2023
-I: pbuilder-time-stamp: 1681300588
+I: Current time: Wed May 15 08:52:56 +14 2024
+I: pbuilder-time-stamp: 1715712776
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./lambda-align_1.0.3.orig.tar.gz]
I: copying [./lambda-align_1.0.3-6.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Sat Feb 8 03:33:49 2020 -12
+gpgv: Signature made Sun Feb 9 05:33:49 2020 +14
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-6.dsc: no acceptable signature found
@@ -28,11 +28,20 @@
dpkg-source: info: applying force-link-rt-pthread.patch
I: using fakeroot in build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/7093/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink11-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME='pbuilder2'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
@@ -42,38 +51,38 @@
IFS='
'
LANG='C'
- LANGUAGE='en_US:en'
+ LANGUAGE='nl_BE:nl'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
+ PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
- PPID='7093'
+ PPID='6626'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WKKXx3wI/pbuilderrc_UmUD --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WKKXx3wI/b1 --logfile b1/build.log lambda-align_1.0.3-6.dsc'
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WKKXx3wI/pbuilderrc_TY2Q --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WKKXx3wI/b2 --logfile b2/build.log --extrapackages usrmerge lambda-align_1.0.3-6.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
+ TZ='/usr/share/zoneinfo/Etc/GMT-14'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
- Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
+ Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Apr 9 22:24 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/7093/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 May 13 06:50 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -171,7 +180,7 @@
Get: 50 http://deb.debian.org/debian bookworm/main arm64 libseqan2-dev all 2.4.0+dfsg-15 [1215 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
-Fetched 33.4 MB in 3s (10.1 MB/s)
+Fetched 33.4 MB in 1s (44.2 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libproc2-0:arm64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19616 files and directories currently installed.)
@@ -396,10 +405,15 @@
Reading package lists...
Building dependency tree...
Reading state information...
+usrmerge is already the newest version (35).
fakeroot is already the newest version (1.31-1.2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/A99_set_merged_usr finished
+hostname: Temporary failure in name resolution
+I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes
dpkg-buildpackage: info: source package lambda-align
dpkg-buildpackage: info: source version 1.0.3-6
dpkg-buildpackage: info: source distribution unstable
@@ -481,15 +495,15 @@
make[3]: Entering directory '/build/lambda-align-1.0.3/build'
cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
-make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
-make[3]: Entering directory '/build/lambda-align-1.0.3/build'
-[ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o
make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build
-cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp
make[3]: Entering directory '/build/lambda-align-1.0.3/build'
-[ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o
+make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
+make[3]: Entering directory '/build/lambda-align-1.0.3/build'
+[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o
cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp
+[ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o
+cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp
In file included from /build/lambda-align-1.0.3/src/misc.hpp:34,
from /build/lambda-align-1.0.3/src/lambda_indexer.hpp:35,
from /build/lambda-align-1.0.3/src/lambda_indexer.cpp:31:
@@ -1726,16 +1740,25 @@
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
- inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
- inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
- inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
- inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
- inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
- inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21:
-/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
+ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
+ inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
+ inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
+ inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
+ inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30:
+/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
-/usr/include/c++/12/new: In member function 'insertStream':
+/usr/include/c++/12/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here
126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
@@ -1752,7 +1775,7 @@
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
- inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21:
+ inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
@@ -1768,25 +1791,16 @@
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
- inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
- inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
- inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
- inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
- inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30:
-/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
+ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
+ inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
+ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
+ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
+ inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
+ inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21:
+/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
-/usr/include/c++/12/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
+/usr/include/c++/12/new: In member function 'insertStream':
/usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here
126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
@@ -2014,16 +2028,25 @@
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
- inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
- inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
- inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
- inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
- inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
- inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21:
-/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
+ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
+ inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
+ inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
+ inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
+ inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
+ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
+ inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30:
+/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
-/usr/include/c++/12/new: In member function 'insertStream':
+/usr/include/c++/12/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
/usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here
126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
@@ -2040,7 +2063,7 @@
inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
- inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21:
+ inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
@@ -2056,25 +2079,16 @@
inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45,
- inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0,
- inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
- inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
- inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0,
- inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30,
- inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1,
- inlined from '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30:
-/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
+ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50,
+ inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11,
+ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31,
+ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42,
+ inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24,
+ inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21:
+/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
-/usr/include/c++/12/new: In function '_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0':
+/usr/include/c++/12/new: In member function 'insertStream':
/usr/include/c++/12/new:126:26: note: in a call to allocation function 'operator new' declared here
126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
@@ -2448,169 +2462,169 @@
cd build/tests && ctest 8
Test project /build/lambda-align-1.0.3/build/tests
Start 1: test_mkindex_blastn_sa
- 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.65 sec
+ 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.41 sec
Start 2: test_mkindex_blastn_fm
- 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.75 sec
+ 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.44 sec
Start 3: test_mkindex_blastp_sa
- 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.24 sec
+ 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.17 sec
Start 4: test_mkindex_blastp_fm
- 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.31 sec
+ 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.21 sec
Start 5: test_mkindex_blastx_sa
- 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.24 sec
+ 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.19 sec
Start 6: test_mkindex_blastx_fm
- 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.20 sec
+ 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.18 sec
Start 7: test_mkindex_tblastn_sa
- 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.10 sec
+ 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.45 sec
Start 8: test_mkindex_tblastn_fm
- 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.60 sec
+ 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.42 sec
Start 9: test_mkindex_tblastx_sa
- 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.06 sec
+ 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.31 sec
Start 10: test_mkindex_tblastx_fm
-10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.55 sec
+10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.41 sec
Start 11: test_search_blastn_sa_m0
-11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 5.20 sec
+11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 4.21 sec
Start 12: test_search_blastn_sa_m8
-12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.33 sec
+12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 3.51 sec
Start 13: test_search_blastn_sa_m9
-13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 4.31 sec
+13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.59 sec
Start 14: test_search_blastn_sa_sam
-14/80 Test #14: test_search_blastn_sa_sam ........ Passed 4.49 sec
+14/80 Test #14: test_search_blastn_sa_sam ........ Passed 3.72 sec
Start 15: test_search_blastn_sa_bam
-15/80 Test #15: test_search_blastn_sa_bam ........ Passed 5.04 sec
+15/80 Test #15: test_search_blastn_sa_bam ........ Passed 3.54 sec
Start 16: test_search_blastn_sa_m9.gz
-16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 4.52 sec
+16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 3.61 sec
Start 17: test_search_blastn_sa_sam.bz2
-17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.27 sec
+17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.09 sec
Start 18: test_search_blastn_fm_m0
-18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.90 sec
+18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.06 sec
Start 19: test_search_blastn_fm_m8
-19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 4.09 sec
+19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.44 sec
Start 20: test_search_blastn_fm_m9
-20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 4.13 sec
+20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 3.52 sec
Start 21: test_search_blastn_fm_sam
-21/80 Test #21: test_search_blastn_fm_sam ........ Passed 4.41 sec
+21/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.52 sec
Start 22: test_search_blastn_fm_bam
-22/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.53 sec
+22/80 Test #22: test_search_blastn_fm_bam ........ Passed 3.60 sec
Start 23: test_search_blastn_fm_m9.gz
-23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 4.47 sec
+23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.61 sec
Start 24: test_search_blastn_fm_sam.bz2
-24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 5.99 sec
+24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 5.21 sec
Start 25: test_search_blastp_sa_m0
-25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.66 sec
+25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.47 sec
Start 26: test_search_blastp_sa_m8
-26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.67 sec
+26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.44 sec
Start 27: test_search_blastp_sa_m9
-27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.66 sec
+27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.52 sec
Start 28: test_search_blastp_sa_sam
-28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.72 sec
+28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.43 sec
Start 29: test_search_blastp_sa_bam
-29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.53 sec
+29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.38 sec
Start 30: test_search_blastp_sa_m9.gz
-30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.63 sec
+30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.44 sec
Start 31: test_search_blastp_sa_sam.bz2
-31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.74 sec
+31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.54 sec
Start 32: test_search_blastp_fm_m0
-32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.70 sec
+32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.45 sec
Start 33: test_search_blastp_fm_m8
-33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.77 sec
+33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.48 sec
Start 34: test_search_blastp_fm_m9
-34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.70 sec
+34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.39 sec
Start 35: test_search_blastp_fm_sam
-35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.76 sec
+35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.44 sec
Start 36: test_search_blastp_fm_bam
-36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.74 sec
+36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.47 sec
Start 37: test_search_blastp_fm_m9.gz
-37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.78 sec
+37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.42 sec
Start 38: test_search_blastp_fm_sam.bz2
-38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.79 sec
+38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.50 sec
Start 39: test_search_blastx_sa_m0
-39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 2.62 sec
+39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 2.10 sec
Start 40: test_search_blastx_sa_m8
-40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 2.40 sec
+40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.81 sec
Start 41: test_search_blastx_sa_m9
-41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 2.08 sec
+41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.72 sec
Start 42: test_search_blastx_sa_sam
-42/80 Test #42: test_search_blastx_sa_sam ........ Passed 2.45 sec
+42/80 Test #42: test_search_blastx_sa_sam ........ Passed 1.96 sec
Start 43: test_search_blastx_sa_bam
-43/80 Test #43: test_search_blastx_sa_bam ........ Passed 2.24 sec
+43/80 Test #43: test_search_blastx_sa_bam ........ Passed 1.74 sec
Start 44: test_search_blastx_sa_m9.gz
-44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 2.15 sec
+44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 2.11 sec
Start 45: test_search_blastx_sa_sam.bz2
-45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 3.64 sec
+45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 2.96 sec
Start 46: test_search_blastx_fm_m0
-46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.42 sec
+46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.00 sec
Start 47: test_search_blastx_fm_m8
-47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.16 sec
+47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.77 sec
Start 48: test_search_blastx_fm_m9
-48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.13 sec
+48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.82 sec
Start 49: test_search_blastx_fm_sam
-49/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.26 sec
+49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.92 sec
Start 50: test_search_blastx_fm_bam
-50/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.24 sec
+50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.97 sec
Start 51: test_search_blastx_fm_m9.gz
-51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.27 sec
+51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.22 sec
Start 52: test_search_blastx_fm_sam.bz2
-52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.52 sec
+52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.06 sec
Start 53: test_search_tblastn_sa_m0
-53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.44 sec
+53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 1.73 sec
Start 54: test_search_tblastn_sa_m8
-54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.43 sec
+54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 1.56 sec
Start 55: test_search_tblastn_sa_m9
-55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.25 sec
+55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 1.39 sec
Start 56: test_search_tblastn_sa_sam
-56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.32 sec
+56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 1.64 sec
Start 57: test_search_tblastn_sa_bam
-57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.19 sec
+57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 1.41 sec
Start 58: test_search_tblastn_sa_m9.gz
-58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.27 sec
+58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 1.58 sec
Start 59: test_search_tblastn_sa_sam.bz2
-59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.24 sec
+59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 2.27 sec
Start 60: test_search_tblastn_fm_m0
-60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.52 sec
+60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.62 sec
Start 61: test_search_tblastn_fm_m8
-61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.21 sec
+61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.36 sec
Start 62: test_search_tblastn_fm_m9
-62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.43 sec
+62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.33 sec
Start 63: test_search_tblastn_fm_sam
-63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.29 sec
+63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.34 sec
Start 64: test_search_tblastn_fm_bam
-64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.43 sec
+64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.30 sec
Start 65: test_search_tblastn_fm_m9.gz
-65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.51 sec
+65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.46 sec
Start 66: test_search_tblastn_fm_sam.bz2
-66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.26 sec
+66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.16 sec
Start 67: test_search_tblastx_sa_m0
-67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 9.91 sec
+67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 7.80 sec
Start 68: test_search_tblastx_sa_m8
-68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 8.79 sec
+68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 6.74 sec
Start 69: test_search_tblastx_sa_m9
-69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 8.64 sec
+69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 6.52 sec
Start 70: test_search_tblastx_sa_sam
-70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 8.59 sec
+70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 6.86 sec
Start 71: test_search_tblastx_sa_bam
-71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 9.43 sec
+71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 6.78 sec
Start 72: test_search_tblastx_sa_m9.gz
-72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 9.24 sec
+72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 7.19 sec
Start 73: test_search_tblastx_sa_sam.bz2
-73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 15.65 sec
+73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 13.32 sec
Start 74: test_search_tblastx_fm_m0
-74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 9.25 sec
+74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 7.27 sec
Start 75: test_search_tblastx_fm_m8
-75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.82 sec
+75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 6.05 sec
Start 76: test_search_tblastx_fm_m9
-76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 7.66 sec
+76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.04 sec
Start 77: test_search_tblastx_fm_sam
-77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 8.14 sec
+77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 6.49 sec
Start 78: test_search_tblastx_fm_bam
-78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 8.69 sec
+78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 5.80 sec
Start 79: test_search_tblastx_fm_m9.gz
-79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.51 sec
+79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 6.49 sec
Start 80: test_search_tblastx_fm_sam.bz2
-80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.81 sec
+80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 12.07 sec
100% tests passed, 0 tests failed out of 80
-Total Test time (real) = 288.82 sec
+Total Test time (real) = 220.59 sec
make[1]: Leaving directory '/build/lambda-align-1.0.3'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
@@ -2631,16 +2645,16 @@
make[3]: Entering directory '/build/lambda-align-1.0.3/build'
cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
-make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build
-make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
-make[3]: Entering directory '/build/lambda-align-1.0.3/build'
-make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'.
make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
+make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build
make[3]: Entering directory '/build/lambda-align-1.0.3/build'
make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'.
make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
-[ 50%] Built target lambda
+make[3]: Entering directory '/build/lambda-align-1.0.3/build'
+make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'.
+make[3]: Leaving directory '/build/lambda-align-1.0.3/build'
+[100%] Built target lambda
[100%] Built target lambda_indexer
make[2]: Leaving directory '/build/lambda-align-1.0.3/build'
/usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0
@@ -2708,12 +2722,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/6626/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/7093 and its subdirectories
-I: Current time: Wed Apr 12 00:29:51 -12 2023
-I: pbuilder-time-stamp: 1681302591
+I: removing directory /srv/workspace/pbuilder/6626 and its subdirectories
+I: Current time: Wed May 15 09:15:17 +14 2024
+I: pbuilder-time-stamp: 1715714117