Diff of the two buildlogs: -- --- b1/build.log 2023-04-09 15:42:11.696397741 +0000 +++ b2/build.log 2023-04-09 15:43:21.958055139 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 9 03:40:59 -12 2023 -I: pbuilder-time-stamp: 1681054859 +I: Current time: Sun May 12 12:05:16 +14 2024 +I: pbuilder-time-stamp: 1715465116 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libbio-searchio-hmmer-perl_1.7.3.orig.tar.gz] I: copying [./libbio-searchio-hmmer-perl_1.7.3-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 17 03:35:51 2019 -12 +gpgv: Signature made Mon Nov 18 05:35:51 2019 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-searchio-hmmer-perl_1.7.3-2.dsc: no acceptable signature found @@ -25,11 +25,20 @@ dpkg-source: info: unpacking libbio-searchio-hmmer-perl_1.7.3-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21931/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/D01_modify_environment starting +debug: Running on codethink11-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -39,38 +48,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='21931' + PPID='21048' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O3U2NEdv/pbuilderrc_pn0F --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O3U2NEdv/b1 --logfile b1/build.log libbio-searchio-hmmer-perl_1.7.3-2.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O3U2NEdv/pbuilderrc_9Q9X --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O3U2NEdv/b2 --logfile b2/build.log --extrapackages usrmerge libbio-searchio-hmmer-perl_1.7.3-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink12-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 8 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/21931/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 10 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +166,7 @@ Get: 43 http://deb.debian.org/debian bookworm/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] -Fetched 21.7 MB in 3s (6670 kB/s) +Fetched 21.7 MB in 1s (36.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -354,10 +363,15 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbio-searchio-hmmer-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-searchio-hmmer-perl_1.7.3-2_source.changes +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libbio-searchio-hmmer-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-searchio-hmmer-perl_1.7.3-2_source.changes dpkg-buildpackage: info: source package libbio-searchio-hmmer-perl dpkg-buildpackage: info: source version 1.7.3-2 dpkg-buildpackage: info: source distribution unstable @@ -381,23 +395,23 @@ dh_auto_build make -j8 make[1]: Entering directory '/build/libbio-searchio-hmmer-perl-1.7.3' -cp lib/Bio/Tools/HMMER/Domain.pm blib/lib/Bio/Tools/HMMER/Domain.pm -cp lib/Bio/Search/Hit/hmmer3Hit.pm blib/lib/Bio/Search/Hit/hmmer3Hit.pm -cp lib/Bio/Search/HSP/HmmpfamHSP.pm blib/lib/Bio/Search/HSP/HmmpfamHSP.pm +cp lib/Bio/SearchIO/hmmer3.pm blib/lib/Bio/SearchIO/hmmer3.pm cp lib/Bio/Tools/Hmmpfam.pm blib/lib/Bio/Tools/Hmmpfam.pm -cp lib/Bio/Search/Result/HMMERResult.pm blib/lib/Bio/Search/Result/HMMERResult.pm +cp lib/Bio/Search/Hit/hmmer3Hit.pm blib/lib/Bio/Search/Hit/hmmer3Hit.pm +cp lib/Bio/SearchIO/hmmer.pm blib/lib/Bio/SearchIO/hmmer.pm cp lib/Bio/Search/HSP/HMMERHSP.pm blib/lib/Bio/Search/HSP/HMMERHSP.pm -cp lib/Bio/Search/Result/hmmer3Result.pm blib/lib/Bio/Search/Result/hmmer3Result.pm +cp lib/Bio/Tools/HMMER/Domain.pm blib/lib/Bio/Tools/HMMER/Domain.pm cp lib/Bio/Search/Result/HmmpfamResult.pm blib/lib/Bio/Search/Result/HmmpfamResult.pm cp lib/Bio/Tools/HMMER/Set.pm blib/lib/Bio/Tools/HMMER/Set.pm -cp lib/Bio/Search/Hit/HmmpfamHit.pm blib/lib/Bio/Search/Hit/HmmpfamHit.pm -cp lib/Bio/SearchIO/hmmer.pm blib/lib/Bio/SearchIO/hmmer.pm +cp lib/Bio/Search/Hit/HMMERHit.pm blib/lib/Bio/Search/Hit/HMMERHit.pm cp lib/Bio/SearchIO/hmmer_pull.pm blib/lib/Bio/SearchIO/hmmer_pull.pm +cp lib/Bio/Search/Hit/HmmpfamHit.pm blib/lib/Bio/Search/Hit/HmmpfamHit.pm cp lib/Bio/SearchIO/hmmer2.pm blib/lib/Bio/SearchIO/hmmer2.pm cp lib/Bio/Index/Hmmer.pm blib/lib/Bio/Index/Hmmer.pm cp lib/Bio/Tools/HMMER/Results.pm blib/lib/Bio/Tools/HMMER/Results.pm -cp lib/Bio/Search/Hit/HMMERHit.pm blib/lib/Bio/Search/Hit/HMMERHit.pm -cp lib/Bio/SearchIO/hmmer3.pm blib/lib/Bio/SearchIO/hmmer3.pm +cp lib/Bio/Search/HSP/HmmpfamHSP.pm blib/lib/Bio/Search/HSP/HmmpfamHSP.pm +cp lib/Bio/Search/Result/hmmer3Result.pm blib/lib/Bio/Search/Result/hmmer3Result.pm +cp lib/Bio/Search/Result/HMMERResult.pm blib/lib/Bio/Search/Result/HMMERResult.pm cp bin/bp_hmmer_to_table.pl blib/script/bp_hmmer_to_table.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_hmmer_to_table.pl cp bin/bp_parse_hmmsearch.pl blib/script/bp_parse_hmmsearch.pl @@ -1593,7 +1607,7 @@ ok 29 ok All tests successful. -Files=7, Tests=1166, 16 wallclock secs ( 0.34 usr 0.04 sys + 14.81 cusr 0.96 csys = 16.15 CPU) +Files=7, Tests=1166, 15 wallclock secs ( 0.35 usr 0.03 sys + 14.10 cusr 0.93 csys = 15.41 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-searchio-hmmer-perl-1.7.3' create-stamp debian/debhelper-build-stamp @@ -1607,22 +1621,22 @@ Manifying 2 pod documents Manifying 17 pod documents Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Index/Hmmer.pm -Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Result/HmmpfamResult.pm -Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Result/hmmer3Result.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Result/HMMERResult.pm -Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/HSP/HMMERHSP.pm +Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Result/hmmer3Result.pm +Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Result/HmmpfamResult.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/HSP/HmmpfamHSP.pm -Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Hit/HMMERHit.pm +Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/HSP/HMMERHSP.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Hit/HmmpfamHit.pm +Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Hit/HMMERHit.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Search/Hit/hmmer3Hit.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Tools/Hmmpfam.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Tools/HMMER/Results.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Tools/HMMER/Set.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/Tools/HMMER/Domain.pm -Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/SearchIO/hmmer3.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/SearchIO/hmmer2.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/SearchIO/hmmer_pull.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/SearchIO/hmmer.pm +Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/perl5/Bio/SearchIO/hmmer3.pm Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/man/man1/bp_parse_hmmsearch.pl.1p Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/man/man1/bp_hmmer_to_table.pl.1p Installing /build/libbio-searchio-hmmer-perl-1.7.3/debian/libbio-searchio-hmmer-perl/usr/share/man/man3/Bio::Tools::Hmmpfam.3pm @@ -1667,12 +1681,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21048/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21931 and its subdirectories -I: Current time: Sun Apr 9 03:42:10 -12 2023 -I: pbuilder-time-stamp: 1681054930 +I: removing directory /srv/workspace/pbuilder/21048 and its subdirectories +I: Current time: Sun May 12 12:06:21 +14 2024 +I: pbuilder-time-stamp: 1715465181