Diff of the two buildlogs: -- --- b1/build.log 2023-04-10 08:57:53.333824432 +0000 +++ b2/build.log 2023-04-10 09:21:05.847561514 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 9 20:19:23 -12 2023 -I: pbuilder-time-stamp: 1681114763 +I: Current time: Mon May 13 05:20:57 +14 2024 +I: pbuilder-time-stamp: 1715527257 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libbpp-seq_2.4.1.orig.tar.gz] I: copying [./libbpp-seq_2.4.1-9.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Nov 28 05:11:00 2022 -12 +gpgv: Signature made Tue Nov 29 07:11:00 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26753/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/D01_modify_environment starting +debug: Running on codethink11-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='26753' + PPID='14184' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Melz5hKD/pbuilderrc_rPtN --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Melz5hKD/b1 --logfile b1/build.log libbpp-seq_2.4.1-9.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Melz5hKD/pbuilderrc_83TW --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Melz5hKD/b2 --logfile b2/build.log --extrapackages usrmerge libbpp-seq_2.4.1-9.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink12-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 8 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/26753/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 10 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -166,7 +175,7 @@ Get: 49 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libbpp-core4 arm64 2.4.1-9 [520 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libbpp-core-dev arm64 2.4.1-9 [910 kB] -Fetched 31.4 MB in 1s (21.0 MB/s) +Fetched 31.4 MB in 2s (12.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -384,8 +393,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbpp-seq-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-seq_2.4.1-9_source.changes +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libbpp-seq-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-seq_2.4.1-9_source.changes dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-9 dpkg-buildpackage: info: source distribution unstable @@ -445,357 +463,357 @@ make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/src /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 0%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -[ 0%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -[ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp +[ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build +[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.cpp -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp -[ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -[ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.cpp cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp -[ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o +make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/DNA.cpp -[ 7%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp +[ 4%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o +[ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong 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"CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o" /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 92%] Linking CXX static library libbpp-seq.a +[ 53%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c 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"CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o" /usr/bin/ranlib libbpp-seq.a make[3]: Leaving 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/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Transliterator.cpp +[ 92%] Linking CXX shared library libbpp-seq.so +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.12 -o libbpp-seq.so.12.0.0 "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o" /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.12.0.0 libbpp-seq.so.12 libbpp-seq.so make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [ 92%] Built target bpp-seq-shared @@ -803,9 +821,9 @@ make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake --color= make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend +make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color= make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend @@ -815,80 +833,80 @@ make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake --color= make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build +make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 92%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /build/libbpp-seq-2.4.1/test/test_alignment_scores.cpp make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build +make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 93%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build -[ 94%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o +make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_io.dir/test_io.cpp.o -MF CMakeFiles/test_io.dir/test_io.cpp.o.d -o CMakeFiles/test_io.dir/test_io.cpp.o -c /build/libbpp-seq-2.4.1/test/test_io.cpp make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build -[ 93%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build +[ 94%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat 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test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /build/libbpp-seq-2.4.1/test/test_alignment_scores.cpp +[ 95%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_containers.dir/test_containers.cpp.o -MF CMakeFiles/test_containers.dir/test_containers.cpp.o.d -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /build/libbpp-seq-2.4.1/test/test_containers.cpp -[ 98%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o +[ 96%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /build/libbpp-seq-2.4.1/test/test_bowker.cpp +[ 97%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o +[ 98%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o -MF CMakeFiles/test_sequences.dir/test_sequences.cpp.o.d -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /build/libbpp-seq-2.4.1/test/test_sequences.cpp -[ 99%] Linking CXX executable test_walker -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_walker -[ 99%] Linking CXX executable test_containers -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_containers -[ 99%] Linking CXX executable test_sequences +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_walker.dir/test_walker.cpp.o -MF CMakeFiles/test_walker.dir/test_walker.cpp.o.d -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /build/libbpp-seq-2.4.1/test/test_walker.cpp +[ 98%] Linking CXX executable test_sequences cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 99%] Linking CXX executable test_alphabets +[ 98%] Linking CXX executable test_containers +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 98%] Linking CXX executable test_alphabets cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 99%] Linking CXX executable test_walker +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [ 99%] Built target test_sequences +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 99%] Built target test_containers +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 99%] Built target test_alphabets +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 99%] Built target test_walker [ 99%] Linking CXX executable test_bowker cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_alphabets -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_bowker -[ 99%] Linking CXX executable test_io -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [100%] Linking CXX executable test_alignment_scores cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 +[100%] Built target test_bowker /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[100%] Linking CXX executable test_io +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [100%] Built target test_alignment_scores +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [100%] Built target test_io make[2]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 @@ -964,6 +982,7 @@ 4: 30 4: -AUGCCGGCGUUUUG-G-CCGACGUGUUUU 4: GAAGGCGG-GUUUUGCGACCGACG--UUUU +5: example.fasta contains 100 sequences 6: --- Strict match --- 6: ATTT: 0 6: TCG: 3 @@ -973,10 +992,10 @@ 6: --- Degenerated match --- 6: CTCAT: 19 6: AAGCA: 16 -1/7 Test #1: test_alignment_scores ............ Passed 0.17 sec -2/7 Test #2: test_alphabets ................... Passed 0.16 sec -3/7 Test #4: test_containers .................. Passed 0.13 sec -4/7 Test #6: test_sequences ................... Passed 0.07 sec +1/7 Test #1: test_alignment_scores ............ Passed 0.10 sec +2/7 Test #2: test_alphabets ................... Passed 0.09 sec +3/7 Test #4: test_containers .................. Passed 0.07 sec +4/7 Test #6: test_sequences ................... Passed 0.05 sec 7: 0 A 4 7: 1 U 5 7: 2 G 6 @@ -1009,7 +1028,6 @@ 7: 4 7: 26 7: 44 -5: example.fasta contains 100 sequences 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 @@ -1085,20 +1103,20 @@ 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% -5/7 Test #7: test_walker ...................... Passed 0.12 sec +5/7 Test #7: test_walker ...................... Passed 0.09 sec 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 -6/7 Test #5: test_io .......................... Passed 0.46 sec -3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.009 0.0492 0.0966 0.4966 -3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0098 0.0478 0.0988 0.4936 -7/7 Test #3: test_bowker ...................... Passed 100.78 sec +6/7 Test #5: test_io .......................... Passed 0.22 sec +3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.011 0.0486 0.0936 0.4934 +3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0118 0.0546 0.107 0.515 +7/7 Test #3: test_bowker ...................... Passed 82.26 sec 100% tests passed, 0 tests failed out of 7 -Total Test time (real) = 100.83 sec +Total Test time (real) = 82.28 sec make[1]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -1300,9 +1318,9 @@ dpkg-gencontrol: warning: package libbpp-seq-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-9_arm64.deb'. -dpkg-deb: building package 'libbpp-seq12-dbgsym' in '../libbpp-seq12-dbgsym_2.4.1-9_arm64.deb'. dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-9_arm64.deb'. +dpkg-deb: building package 'libbpp-seq12-dbgsym' in '../libbpp-seq12-dbgsym_2.4.1-9_arm64.deb'. +dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-seq_2.4.1-9_arm64.buildinfo dpkg-genchanges --build=binary -O../libbpp-seq_2.4.1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1310,12 +1328,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14184/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26753 and its subdirectories -I: Current time: Sun Apr 9 20:57:52 -12 2023 -I: pbuilder-time-stamp: 1681117072 +I: removing directory /srv/workspace/pbuilder/14184 and its subdirectories +I: Current time: Mon May 13 05:44:03 +14 2024 +I: pbuilder-time-stamp: 1715528643