Diff of the two buildlogs: -- --- b1/build.log 2023-04-16 17:03:23.695708099 +0000 +++ b2/build.log 2023-04-16 17:09:45.350784387 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 16 04:54:04 -12 2023 -I: pbuilder-time-stamp: 1681664044 +I: Current time: Sun May 19 13:26:27 +14 2024 +I: pbuilder-time-stamp: 1716074787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./pbcopper_2.0.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.0.0+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Feb 24 05:34:18 2022 -12 +gpgv: Signature made Fri Feb 25 07:34:18 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,52 +30,84 @@ dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5314/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 19 13:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5314' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25313 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LGWkO9sj/pbuilderrc_xvni --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LGWkO9sj/b1 --logfile b1/build.log pbcopper_2.0.0+dfsg-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LGWkO9sj/pbuilderrc_mRa2 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LGWkO9sj/b2 --logfile b2/build.log --extrapackages usrmerge pbcopper_2.0.0+dfsg-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 14 00:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/5314/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 18 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 72 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] -Fetched 47.6 MB in 3s (18.1 MB/s) +Fetched 47.6 MB in 2s (26.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -513,8 +545,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/pbcopper-2.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.0.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/pbcopper-2.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbcopper_2.0.0+dfsg-2_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -589,74 +630,74 @@ [3/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp [4/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -c ../tests/src/align/test_GlobalLocalAlignment.cpp [5/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -c ../tests/src/align/test_EdlibAlign.cpp -[6/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp +[6/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp [7/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp -[8/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp -[9/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF tests/pbcopper_test.p/src_align_test_Seeds.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -c ../tests/src/align/test_Seeds.cpp +[8/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF tests/pbcopper_test.p/src_align_test_Seeds.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -c ../tests/src/align/test_Seeds.cpp +[9/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp [10/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o -c ../src/align/ChainSeedsConfig.cpp [11/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o -MF src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o.d -o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o -c ../src/algorithm/Heteroduplex.cpp [12/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o -c ../src/align/EdlibAlign.cpp -[13/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o -c ../src/align/BandedChainAlignment.cpp -[14/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o -c 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-Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o -MF src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o.d -o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o -c ../src/pbmer/Mers.cpp +[73/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o -MF src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o.d -o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o -c ../src/pbmer/DbgNode.cpp [74/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src 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src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o.d -o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o -c ../src/pbmer/KFGraph.cpp -[83/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o -MF src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o.d -o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o -c ../src/third-party/base64/base64.cpp +[83/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o -MF src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o.d -o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o -c ../src/reports/TaskReport.cpp [84/164] cc -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o -MF src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o.d -o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o -c ../src/third-party/htslib/kfunc.c -[85/164] cc -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o -MF src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o.d -o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o -c ../src/third-party/ksw2/kalloc.c -[86/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include 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@@ -704,39 +745,39 @@ [103/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -c ../tests/src/cli2/test_OptionValue.cpp [104/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o -MF src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o.d -o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o -c ../src/utility/Alarm.cpp [105/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp -[106/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp -[107/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp +[106/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c ../tests/src/cli2/test_OptionTranslator.cpp +[107/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp [108/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp -[109/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c ../tests/src/cli2/test_OptionTranslator.cpp +[109/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp [110/164] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -[111/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp -[112/164] c++ -o src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.2.0.0 -Wl,--end-group -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread +[111/164] c++ -o src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.2.0.0 -Wl,--end-group -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread +[112/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp [113/164] /usr/bin/meson --internal symbolextractor /build/pbcopper-2.0.0+dfsg/build src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/libpbcopper.so.2.0.0.symbols -[114/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp -[115/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp -[116/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -c ../tests/src/cli2/test_CommandLineParser.cpp +[114/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -c ../tests/src/cli2/test_CommandLineParser.cpp +[115/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp +[116/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp [117/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp [118/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_Results.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -c ../tests/src/cli2/test_Results.cpp -[119/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp -[120/164] c++ -Itests/pbcopper_test.p -Itests 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tests/pbcopper_test.p/src_logging_test_Logging.cpp.o.d -o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -c ../tests/src/logging/test_Logging.cpp [135/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp [136/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp [137/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp -[138/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp +[138/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp [139/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [140/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -c ../tests/src/pbmer/test_Kmer.cpp [141/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp @@ -747,7 +788,7 @@ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ -[142/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp +[142/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp [143/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp [144/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp [145/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp @@ -755,15 +796,15 @@ [147/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp [148/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [149/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp -[150/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp -[151/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp -[152/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp -[153/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp -[154/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp -[155/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp -[156/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB 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-Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp +[151/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond 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tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp +[153/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp +[154/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp +[155/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp +[156/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp +[157/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp +[158/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp [159/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [160/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp [161/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp @@ -773,9 +814,9 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/pbcopper-2.0.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs -1/3 pbcopper formatting check OK 0.03s -2/3 pbcopper EOF check OK 1.01s -3/3 pbcopper gtest unittests OK 4.56s +1/3 pbcopper formatting check OK 0.02s +2/3 pbcopper EOF check OK 0.86s +3/3 pbcopper gtest unittests OK 3.87s Ok: 3 Expected Fail: 0 @@ -991,12 +1032,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25313/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5314 and its subdirectories -I: Current time: Sun Apr 16 05:03:22 -12 2023 -I: pbuilder-time-stamp: 1681664602 +I: removing directory /srv/workspace/pbuilder/25313 and its subdirectories +I: Current time: Sun May 19 13:32:44 +14 2024 +I: pbuilder-time-stamp: 1716075164