Diff of the two buildlogs: -- --- b1/build.log 2023-05-18 03:45:41.320198188 +0000 +++ b2/build.log 2023-05-18 03:49:38.021823663 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 17 15:41:02 -12 2023 -I: pbuilder-time-stamp: 1684381262 +I: Current time: Thu Jun 20 00:08:46 +14 2024 +I: pbuilder-time-stamp: 1718791726 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./prank_0.0.170427+dfsg.orig.tar.xz] I: copying [./prank_0.0.170427+dfsg-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Oct 30 02:38:12 2020 -12 +gpgv: Signature made Sat Oct 31 04:38:12 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,52 +30,84 @@ dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1887/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 20 00:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1887' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30283 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/pbuilderrc_YWEd --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/b1 --logfile b1/build.log prank_0.0.170427+dfsg-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/pbuilderrc_lyVD --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N6Cxc34B/b2 --logfile b2/build.log --extrapackages usrmerge prank_0.0.170427+dfsg-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 16 22:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1887/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 17 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] -Fetched 18.3 MB in 0s (42.2 MB/s) +Fetched 18.3 MB in 0s (40.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -275,8 +307,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/prank-0.0.170427+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prank_0.0.170427+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/prank-0.0.170427+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../prank_0.0.170427+dfsg-3_source.changes dpkg-buildpackage: info: source package prank dpkg-buildpackage: info: source version 0.0.170427+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -334,14 +375,15 @@ In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, - from terminalsequence.cpp:24: + from treenode.cpp:25: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, - from writefile.h:25, - from writefile.cpp:27: + from hmmodel.h:36, + from config.h:31, + from terminalsequence.cpp:24: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} @@ -359,9 +401,8 @@ 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ In file included from ancestralnode.h:24, - from hmmodel.h:36, - from config.h:31, - from treenode.cpp:25: + from writefile.h:25, + from writefile.cpp:27: ./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} @@ -377,6 +418,13 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o prank.o prank.cpp +In file included from readnewick.h:29, + from progressivealignment.cpp:28: +treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': +treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] + 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} + | ^ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o postprobability.o postprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -385,13 +433,6 @@ ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -In file included from readnewick.h:29, - from progressivealignment.cpp:28: -treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)': -treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] - 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} - | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o postprobability.o postprobability.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, @@ -439,6 +480,7 @@ | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o guidetree.o guidetree.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o fullprobability.o fullprobability.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o flmatrix.o flmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -447,7 +489,6 @@ ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o flmatrix.o flmatrix.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -460,6 +501,7 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o characterprobability.o characterprobability.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -468,7 +510,6 @@ ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, @@ -510,7 +551,6 @@ 1517 | } | ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o check_version.o check_version.cpp -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp hmmodel.cpp: In member function 'void HMModel::readModel(const char*)': hmmodel.cpp:338:31: warning: '%i' directive writing between 1 and 11 bytes into a region of size 5 [-Wformat-overflow=] 338 | sprintf(str,"state%i",l); @@ -531,6 +571,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, @@ -592,8 +633,8 @@ dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src -dpkg-deb: building package 'prank' in '../prank_0.0.170427+dfsg-3_arm64.deb'. dpkg-deb: building package 'prank-dbgsym' in '../prank-dbgsym_0.0.170427+dfsg-3_arm64.deb'. +dpkg-deb: building package 'prank' in '../prank_0.0.170427+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../prank_0.0.170427+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../prank_0.0.170427+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -601,12 +642,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30283/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1887 and its subdirectories -I: Current time: Wed May 17 15:45:40 -12 2023 -I: pbuilder-time-stamp: 1684381540 +I: removing directory /srv/workspace/pbuilder/30283 and its subdirectories +I: Current time: Thu Jun 20 00:12:36 +14 2024 +I: pbuilder-time-stamp: 1718791956