Diff of the two buildlogs: -- --- b1/build.log 2023-04-10 10:34:30.956659148 +0000 +++ b2/build.log 2023-04-10 10:42:24.488847512 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 9 22:26:17 -12 2023 -I: pbuilder-time-stamp: 1681122377 +I: Current time: Mon May 13 06:57:34 +14 2024 +I: pbuilder-time-stamp: 1715533054 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-8.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Dec 6 03:39:00 2022 -12 +gpgv: Signature made Wed Dec 7 05:39:00 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,11 +31,20 @@ dpkg-source: info: applying avoid-multiple-namespace.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11557/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -45,38 +54,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='11557' + PPID='19888' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/pbuilderrc_rOnJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-8.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/pbuilderrc_FfxJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LCFDeatQ/b2 --logfile b2/build.log --extrapackages usrmerge python-csb_1.2.5+dfsg-8.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 7 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11557/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 13 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -266,7 +275,7 @@ Get: 140 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 python3-matplotlib arm64 3.6.3-1+b1 [6774 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] -Fetched 111 MB in 2s (45.6 MB/s) +Fetched 111 MB in 5s (23.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -861,8 +870,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-8_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-8 dpkg-buildpackage: info: source distribution unstable @@ -1254,7 +1272,7 @@ testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsdsrg8l1' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplrmy4yn2' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1375,27 +1393,27 @@ content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv28pkd2y' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps81a2idu' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7at96_m8' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph2mf93tn' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu19iv_7b' mode='r' encoding='UTF-8'> +testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw5z2fqvo' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgwwxyvcw' mode='r' encoding='UTF-8'> +testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa7nm8snx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdjge9eff' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7df7_qp3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8rs9r_cs' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp088vejc3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1407,11 +1425,11 @@ testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkq0d7z30' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpevcm16v_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp29ci4co5' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfrhzdfwh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1441,14 +1459,14 @@ testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_pgia8d2' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoho5ga3o' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6z1hslh6' mode='r' encoding='UTF-8'> +@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3frd6wwo' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1631,10 +1649,10 @@ testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0po7f2xc' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpisjxlw5d' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpesr84395' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0x87m8al' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1650,10 +1668,10 @@ testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbs_dqw77' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm326ql1y' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpakml06sh' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp60c0ud25' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1669,10 +1687,10 @@ testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgaq4oxoa' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfgz2o3he' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpajigjofk' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5ye4z2sp' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1699,10 +1717,10 @@ testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplajcevld' mode='r' encoding='UTF-8'> +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt4_rw0fr' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcka3pyse' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0iccb4j8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1811,10 +1829,10 @@ testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkgfc6qpd' mode='r' encoding='UTF-8'> +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl70bhm66' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvg98prff' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_7j0dxon' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1882,7 +1900,7 @@ testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcx1w1g9a' mode='r' encoding='UTF-8'> +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppwhrgody' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1899,15 +1917,15 @@ testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf2hhrwpy' mode='r' encoding='UTF-8'> +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpo8xh4l3d' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe1ywowsl' mode='r' encoding='UTF-8'> +testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphgmxmvvj' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf478bgde' mode='r' encoding='UTF-8'> +testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpssrxzn22' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1923,7 +1941,7 @@ testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf55qp0fp' mode='r' encoding='UTF-8'> +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6jt4z6wq' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1938,7 +1956,7 @@ testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgw5uswpx' mode='r' encoding='UTF-8'> +testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.11_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5se2istz' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2099,7 +2117,7 @@ testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-11_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok ---------------------------------------------------------------------- -Ran 697 tests in 346.818s +Ran 697 tests in 324.212s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' @@ -2634,12 +2652,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19888/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11557 and its subdirectories -I: Current time: Sun Apr 9 22:34:29 -12 2023 -I: pbuilder-time-stamp: 1681122869 +I: removing directory /srv/workspace/pbuilder/19888 and its subdirectories +I: Current time: Mon May 13 07:05:23 +14 2024 +I: pbuilder-time-stamp: 1715533523