Diff of the two buildlogs: -- --- b1/build.log 2023-04-14 02:54:17.101733838 +0000 +++ b2/build.log 2023-04-14 02:57:35.812905924 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 13 14:48:21 -12 2023 -I: pbuilder-time-stamp: 1681440501 +I: Current time: Thu May 16 23:17:20 +14 2024 +I: pbuilder-time-stamp: 1715851040 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./r-bioc-structuralvariantannotation_1.13.0+ds.orig.tar.xz] I: copying [./r-bioc-structuralvariantannotation_1.13.0+ds-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Nov 21 18:49:04 2022 -12 +gpgv: Signature made Tue Nov 22 20:49:04 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying skip_test_requiring_large_data.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5637/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='5637' + PPID='5597' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YVxaqOc4/pbuilderrc_bRUo --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YVxaqOc4/b1 --logfile b1/build.log r-bioc-structuralvariantannotation_1.13.0+ds-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YVxaqOc4/pbuilderrc_dpH2 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YVxaqOc4/b2 --logfile b2/build.log --extrapackages usrmerge r-bioc-structuralvariantannotation_1.13.0+ds-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 12 22:50 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/5637/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 15 06:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -415,7 +424,7 @@ Get: 272 http://deb.debian.org/debian bookworm/main arm64 r-bioc-bsgenome all 1.66.3-1 [6997 kB] Get: 273 http://deb.debian.org/debian bookworm/main arm64 r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB] Get: 274 http://deb.debian.org/debian bookworm/main arm64 r-bioc-variantannotation arm64 1.44.1-1 [3620 kB] -Fetched 206 MB in 6s (34.8 MB/s) +Fetched 206 MB in 4s (54.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1548,8 +1557,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/r-bioc-structuralvariantannotation-1.13.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-structuralvariantannotation_1.13.0+ds-1_source.changes +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/r-bioc-structuralvariantannotation-1.13.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-structuralvariantannotation_1.13.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-structuralvariantannotation dpkg-buildpackage: info: source version 1.13.0+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -1646,12 +1664,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5597/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5637 and its subdirectories -I: Current time: Thu Apr 13 14:54:15 -12 2023 -I: pbuilder-time-stamp: 1681440855 +I: removing directory /srv/workspace/pbuilder/5597 and its subdirectories +I: Current time: Thu May 16 23:20:34 +14 2024 +I: pbuilder-time-stamp: 1715851234