Diff of the two buildlogs: -- --- b1/build.log 2023-05-31 23:02:42.201351613 +0000 +++ b2/build.log 2023-05-31 23:04:54.863541829 +0000 @@ -1,8 +1,65 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 31 11:00:34 -12 2023 -I: pbuilder-time-stamp: 1685574034 +I: Current time: Wed Jul 3 16:39:10 +14 2024 +I: pbuilder-time-stamp: 1719974350 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-05 10:27:37 is 34364898.71372712 s in the future +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-05 10:27:37 is 34364898.71343014 s in the future +tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-05 10:27:37 is 34364898.71324198 s in the future +tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-05 10:27:37 is 34364898.70909978 s in the future +tar: ./usr/share/doc/adduser: time stamp 2025-08-05 10:27:37 is 34364898.70863948 s in the future +tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.59170074 s in the future +tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.56507644 s in the future +tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.53778584 s in the future +tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.50855616 s in the future +tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.44942986 s in the future +tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.44287596 s in the future +tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.36046656 s in the future +tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.35040838 s in the future +tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.33362808 s in the future +tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.30921438 s in the future +tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.27907944 s in the future +tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.25544026 s in the future +tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.21398548 s in the future +tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.1761604 s in the future +tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.14200738 s in the future +tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.10162128 s in the future +tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.076254 s in the future +tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364898.00136554 s in the future +tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364897.98586196 s in the future +tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364897.9310872 s in the future +tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364897.83946188 s in the future +tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364897.8066675 s in the future +tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-05 10:27:37 is 34364897.77751516 s in the future +tar: ./usr/share/man/de/man5: time stamp 2025-08-05 10:27:37 is 34364897.58857624 s in the future +tar: ./usr/share/man/fr/man5: time stamp 2025-08-05 10:27:37 is 34364897.56536792 s in the future +tar: ./usr/share/man/man5: time stamp 2025-08-05 10:27:37 is 34364897.48861768 s in the future +tar: ./usr/share/man/nl/man5: time stamp 2025-08-05 10:27:37 is 34364897.42411444 s in the future +tar: ./usr/share/man/nl/man8: time stamp 2025-08-05 10:27:37 is 34364897.42245132 s in the future +tar: ./usr/share/man/pt/man5: time stamp 2025-08-05 10:27:37 is 34364897.39947276 s in the future +tar: ./usr/share/man/pt/man8: time stamp 2025-08-05 10:27:37 is 34364897.39766852 s in the future +tar: ./usr/share/perl5/Debian: time stamp 2025-08-05 10:27:37 is 34364897.28357612 s in the future +tar: ./var/lib/apt/extended_states: time stamp 2025-08-05 10:27:37 is 34364894.04341476 s in the future +tar: ./var/lib/apt: time stamp 2025-08-05 10:27:37 is 34364894.04331128 s in the future +tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-05 10:27:37 is 34364893.94054008 s in the future +tar: ./var/lib/dpkg/info: time stamp 2025-08-05 10:27:37 is 34364893.9402042 s in the future +tar: ./var/lib/dpkg/updates: time stamp 2025-08-05 10:27:37 is 34364893.94009034 s in the future +tar: ./var/lib/dpkg/lock: time stamp 2025-08-05 10:27:37 is 34364893.937791 s in the future +tar: ./var/lib/dpkg/triggers/Lock: time stamp 2025-08-05 10:27:37 is 34364893.93765946 s in the future +tar: ./var/lib/dpkg/status-old: time stamp 2025-08-05 10:27:37 is 34364893.93529384 s in the future +tar: ./var/lib/dpkg/status: time stamp 2025-08-05 10:27:37 is 34364893.93280116 s in the future +tar: ./var/lib/dpkg: time stamp 2025-08-05 10:27:37 is 34364893.93269538 s in the future +tar: ./var/cache/apt/archives/partial: time stamp 2025-08-05 10:27:36 is 34364892.93074076 s in the future +tar: ./var/cache/apt/archives: time stamp 2025-08-05 10:27:39 is 34364895.93062842 s in the future +tar: ./var/log/apt/term.log: time stamp 2025-08-05 10:27:37 is 34364893.90905362 s in the future +tar: ./var/log/apt/history.log: time stamp 2025-08-05 10:27:37 is 34364893.90817546 s in the future +tar: ./var/log/apt/eipp.log.xz: time stamp 2025-08-05 10:27:36 is 34364892.9080519 s in the future +tar: ./var/log/apt: time stamp 2025-08-05 10:27:36 is 34364892.90800918 s in the future +tar: ./var/log/dpkg.log: time stamp 2025-08-05 10:27:37 is 34364893.90716402 s in the future +tar: ./usr/sbin: time stamp 2025-08-05 10:27:37 is 34364893.75162512 s in the future +tar: ./usr/share/man/man8: time stamp 2025-08-05 10:27:37 is 34364893.75092172 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2025-08-05 10:27:37 is 34364893.75074286 s in the future +tar: ./usr/share/man/de/man8: time stamp 2025-08-05 10:27:37 is 34364893.7506236 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -16,7 +73,7 @@ I: copying [./ruby-crb-blast_0.6.9.orig.tar.gz] I: copying [./ruby-crb-blast_0.6.9-4.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Apr 5 09:18:55 2020 -12 +gpgv: Signature made Mon Apr 6 11:18:55 2020 +14 gpgv: using RSA key 6C9D10484A9AE4CC385F7C71823E967606C34B96 gpgv: issuer "utkarsh@debian.org" gpgv: Can't check signature: No public key @@ -34,52 +91,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5354/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 3 16:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5354' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21256 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EauFegCm/pbuilderrc_hyRX --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EauFegCm/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-4.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EauFegCm/pbuilderrc_YrST --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EauFegCm/b2 --logfile b2/build.log --extrapackages usrmerge ruby-crb-blast_0.6.9-4.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink14-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 24 22:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/5354/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 28 2023 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -281,7 +370,7 @@ Get: 146 http://deb.debian.org/debian bookworm/main arm64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 147 http://deb.debian.org/debian bookworm/main arm64 ruby-threach all 0.2.0-2 [5320 B] Get: 148 http://deb.debian.org/debian bookworm/main arm64 ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 62.1 MB in 3s (20.1 MB/s) +Fetched 62.1 MB in 1s (44.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) @@ -896,8 +985,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-4_source.changes +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-4_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-4 dpkg-buildpackage: info: source distribution unstable @@ -976,38 +1074,38 @@ Loaded suite /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (1.865275) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.790769) - test: crb-blast should break input file into pieces. :.: (1.722978) - test: crb-blast should find reciprocals. : .: (1.725611) - test: crb-blast should get non reciprocal hits. : .: (1.641660) - test: crb-blast should load output should check if the databases exist. : .: (1.851896) - test: crb-blast should run blast should check if the databases exist yet. : .: (1.876257) - test: crb-blast should setup2 should run ok. : .: (1.796920) + test: crb-blast should add secondary hits. : .: (1.548075) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.531868) + test: crb-blast should break input file into pieces. :.: (1.557963) + test: crb-blast should find reciprocals. : .: (1.646458) + test: crb-blast should get non reciprocal hits. : .: (1.728885) + test: crb-blast should load output should check if the databases exist. : .: (1.621990) + test: crb-blast should run blast should check if the databases exist yet. : .: (1.585325) + test: crb-blast should setup2 should run ok. : .: (1.849946) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.005828) - test: crb-blast should run. : .: (1.454030) - test: crb-blast should work for query sequences with pipes. : .: (1.549474) + test: crb-blast should raise error when files don't exist. : .: (0.015604) + test: crb-blast should run. : .: (1.452811) + test: crb-blast should work for query sequences with pipes. : .: (1.474858) TestBinary: - test: crb-blast should run binary. : .: (0.514420) + test: crb-blast should run binary. : .: (0.531144) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (2.151211) - test: crb-blast should determine that the target is a protein sequence. : .: (2.010817) - test: crb-blast should find reciprocals. : .: (1.980100) - test: crb-blast should get number of reciprocals. : .: (1.985854) - test: crb-blast should get query results. : .: (1.995151) - test: crb-blast should load outputs. : .: (1.863480) - test: crb-blast should not find fake scaffold name. : .: (1.845454) - test: crb-blast should output all reciprocal hits. : .: (2.064932) - test: crb-blast should run blast. : .: (2.044592) - test: crb-blast should setup should run ok. : .: (2.005608) + test: crb-blast should check if contig has reciprocal hit. : .: (1.926469) + test: crb-blast should determine that the target is a protein sequence. : .: (1.823028) + test: crb-blast should find reciprocals. : .: (1.921490) + test: crb-blast should get number of reciprocals. : .: (1.867284) + test: crb-blast should get query results. : .: (1.722614) + test: crb-blast should load outputs. : .: (1.951572) + test: crb-blast should not find fake scaffold name. : .: (1.822514) + test: crb-blast should output all reciprocal hits. : .: (2.069199) + test: crb-blast should run blast. : .: (1.967012) + test: crb-blast should setup should run ok. : .: (1.893640) -Finished in 37.758339061 seconds. +Finished in 35.5208788 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.58 tests/s, 1.11 assertions/s +0.62 tests/s, 1.18 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1039,12 +1137,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5354 and its subdirectories -I: Current time: Wed May 31 11:02:41 -12 2023 -I: pbuilder-time-stamp: 1685574161 +I: removing directory /srv/workspace/pbuilder/21256 and its subdirectories +I: Current time: Wed Jul 3 16:41:17 +14 2024 +I: pbuilder-time-stamp: 1719974477