Diff of the two buildlogs: -- --- b1/build.log 2023-04-12 15:20:06.420104437 +0000 +++ b2/build.log 2023-04-12 15:23:44.210509678 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 14 09:40:27 -12 2024 -I: pbuilder-time-stamp: 1715722827 +I: Current time: Thu Apr 13 05:20:10 +14 2023 +I: pbuilder-time-stamp: 1681312810 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./scoary_1.6.16.orig.tar.gz] I: copying [./scoary_1.6.16-5.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Dec 7 09:21:31 2022 -12 +gpgv: Signature made Thu Dec 8 11:21:31 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -28,11 +28,20 @@ dpkg-source: info: applying python3.11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7725/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' @@ -42,38 +51,38 @@ IFS=' ' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='7725' + PPID='29385' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CUF2beIu/pbuilderrc_z8N8 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CUF2beIu/b1 --logfile b1/build.log scoary_1.6.16-5.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CUF2beIu/pbuilderrc_2L21 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CUF2beIu/b2 --logfile b2/build.log --extrapackages usrmerge scoary_1.6.16-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a - Linux codethink11-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 04:50 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/7725/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 12 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +209,7 @@ Get: 77 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] -Fetched 72.7 MB in 8s (9687 kB/s) +Fetched 72.7 MB in 3s (24.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -542,8 +551,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/scoary-1.6.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scoary_1.6.16-5_source.changes +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/scoary-1.6.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scoary_1.6.16-5_source.changes dpkg-buildpackage: info: source package scoary dpkg-buildpackage: info: source version 1.6.16-5 dpkg-buildpackage: info: source distribution unstable @@ -631,7 +649,7 @@ copying scoary/exampledata/Restrict_to.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.11/build/scoary/exampledata copying scoary/exampledata/Tetracycline_resistance.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.11/build/scoary/exampledata debian/rules override_dh_auto_test -make[1]: Entering directory '/build/scoary-1.6.16' +make[1]: Map '/build/scoary-1.6.16' wordt binnengegaan # tests steps are described in .travis.yml set -e \ ; for PYTHON3 in python3.11 \ @@ -699,7 +717,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 23 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 29 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -736,7 +754,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 14 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 18 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -777,7 +795,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 9 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 12 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -817,7 +835,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 17 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 22 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. /build/scoary-1.6.16/scoary/vcf2scoary.py:94: SyntaxWarning: "is not" with a literal. Did you mean "!="? if args.types is not "ALL": @@ -825,7 +843,7 @@ if args.types is not "ALL": VCF version 4.1 detected Reached the end of the file -make[1]: Leaving directory '/build/scoary-1.6.16' +make[1]: Map '/build/scoary-1.6.16' wordt verlaten create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -926,7 +944,7 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'scoary' in '../scoary_1.6.16-5_all.deb'. +dpkg-deb: pakket 'scoary' wordt gebouwd in '../scoary_1.6.16-5_all.deb'. dpkg-genbuildinfo --build=binary -O../scoary_1.6.16-5_arm64.buildinfo dpkg-genchanges --build=binary -O../scoary_1.6.16-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -934,12 +952,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29385/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7725 and its subdirectories -I: Current time: Tue May 14 09:43:05 -12 2024 -I: pbuilder-time-stamp: 1715722985 +I: removing directory /srv/workspace/pbuilder/29385 and its subdirectories +I: Current time: Thu Apr 13 05:23:42 +14 2023 +I: pbuilder-time-stamp: 1681313022