Diff of the two buildlogs:
--
--- b1/build.log 2023-04-11 18:51:05.795733244 +0000
+++ b2/build.log 2023-04-11 18:54:03.301783726 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Mon May 13 13:11:44 -12 2024
-I: pbuilder-time-stamp: 1715649104
+I: Current time: Wed Apr 12 08:51:09 +14 2023
+I: pbuilder-time-stamp: 1681239069
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./spoa_4.0.8.orig.tar.gz]
I: copying [./spoa_4.0.8-1.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Tue Nov 29 08:41:56 2022 -12
+gpgv: Signature made Wed Nov 30 10:41:56 2022 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
@@ -30,11 +30,20 @@
dpkg-source: info: applying shared_and_static.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/28582/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink12-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME='pbuilder2'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
@@ -44,38 +53,38 @@
IFS='
'
LANG='C'
- LANGUAGE='en_US:en'
+ LANGUAGE='nl_BE:nl'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
+ PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
- PPID='28582'
+ PPID='27448'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/pbuilderrc_HY3G --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/b1 --logfile b1/build.log spoa_4.0.8-1.dsc'
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/pbuilderrc_qPMJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RipunGcK/b2 --logfile b2/build.log --extrapackages usrmerge spoa_4.0.8-1.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
+ TZ='/usr/share/zoneinfo/Etc/GMT-14'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
- Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
+ Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 May 13 04:48 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/28582/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Apr 10 00:26 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -182,7 +191,7 @@
Get: 55 http://deb.debian.org/debian bookworm/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libsimde-dev all 0.7.4~rc2-2 [377 kB]
-Fetched 32.3 MB in 3s (11.2 MB/s)
+Fetched 32.3 MB in 1s (36.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libproc2-0:arm64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19616 files and directories currently installed.)
@@ -424,8 +433,17 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/spoa-4.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.0.8-1_source.changes
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/A99_set_merged_usr finished
+hostname: Temporary failure in name resolution
+I: Running cd /build/spoa-4.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.0.8-1_source.changes
dpkg-buildpackage: info: source package spoa
dpkg-buildpackage: info: source version 4.0.8-1
dpkg-buildpackage: info: source distribution unstable
@@ -554,47 +572,47 @@
[----------] 19 tests from SpoaTest
[ RUN ] SpoaTest.Clear
-[ OK ] SpoaTest.Clear (342 ms)
+[ OK ] SpoaTest.Clear (369 ms)
[ RUN ] SpoaTest.Local
-[ OK ] SpoaTest.Local (179 ms)
+[ OK ] SpoaTest.Local (191 ms)
[ RUN ] SpoaTest.LocalAffine
-[ OK ] SpoaTest.LocalAffine (249 ms)
+[ OK ] SpoaTest.LocalAffine (267 ms)
[ RUN ] SpoaTest.LocalConvex
-[ OK ] SpoaTest.LocalConvex (393 ms)
+[ OK ] SpoaTest.LocalConvex (422 ms)
[ RUN ] SpoaTest.LocalWithQualities
-[ OK ] SpoaTest.LocalWithQualities (181 ms)
+[ OK ] SpoaTest.LocalWithQualities (194 ms)
[ RUN ] SpoaTest.LocalAffineWithQualities
-[ OK ] SpoaTest.LocalAffineWithQualities (246 ms)
+[ OK ] SpoaTest.LocalAffineWithQualities (266 ms)
[ RUN ] SpoaTest.LocalConvexWithQualities
-[ OK ] SpoaTest.LocalConvexWithQualities (393 ms)
+[ OK ] SpoaTest.LocalConvexWithQualities (419 ms)
[ RUN ] SpoaTest.Global
-[ OK ] SpoaTest.Global (185 ms)
+[ OK ] SpoaTest.Global (193 ms)
[ RUN ] SpoaTest.GlobalAffine
-[ OK ] SpoaTest.GlobalAffine (246 ms)
+[ OK ] SpoaTest.GlobalAffine (265 ms)
[ RUN ] SpoaTest.GlobalConvex
-[ OK ] SpoaTest.GlobalConvex (380 ms)
+[ OK ] SpoaTest.GlobalConvex (412 ms)
[ RUN ] SpoaTest.GlobalWithQualities
-[ OK ] SpoaTest.GlobalWithQualities (182 ms)
+[ OK ] SpoaTest.GlobalWithQualities (196 ms)
[ RUN ] SpoaTest.GlobalAffineWithQualities
-[ OK ] SpoaTest.GlobalAffineWithQualities (247 ms)
+[ OK ] SpoaTest.GlobalAffineWithQualities (269 ms)
[ RUN ] SpoaTest.GlobalConvexWithQualities
-[ OK ] SpoaTest.GlobalConvexWithQualities (383 ms)
+[ OK ] SpoaTest.GlobalConvexWithQualities (414 ms)
[ RUN ] SpoaTest.SemiGlobal
-[ OK ] SpoaTest.SemiGlobal (175 ms)
+[ OK ] SpoaTest.SemiGlobal (185 ms)
[ RUN ] SpoaTest.SemiGlobalAffine
-[ OK ] SpoaTest.SemiGlobalAffine (242 ms)
+[ OK ] SpoaTest.SemiGlobalAffine (264 ms)
[ RUN ] SpoaTest.SemiGlobalConvex
-[ OK ] SpoaTest.SemiGlobalConvex (386 ms)
+[ OK ] SpoaTest.SemiGlobalConvex (409 ms)
[ RUN ] SpoaTest.SemiGlobalWithQualities
-[ OK ] SpoaTest.SemiGlobalWithQualities (168 ms)
+[ OK ] SpoaTest.SemiGlobalWithQualities (185 ms)
[ RUN ] SpoaTest.SemiGlobalAffineWithQualities
-[ OK ] SpoaTest.SemiGlobalAffineWithQualities (239 ms)
+[ OK ] SpoaTest.SemiGlobalAffineWithQualities (264 ms)
[ RUN ] SpoaTest.SemiGlobalConvexWithQualities
-[ OK ] SpoaTest.SemiGlobalConvexWithQualities (376 ms)
-[----------] 19 tests from SpoaTest (5204 ms total)
+[ OK ] SpoaTest.SemiGlobalConvexWithQualities (412 ms)
+[----------] 19 tests from SpoaTest (5608 ms total)
[----------] Global test environment tear-down
-[==========] 22 tests from 2 test suites ran. (5204 ms total)
+[==========] 22 tests from 2 test suites ran. (5608 ms total)
[ PASSED ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:495
@@ -673,11 +691,11 @@
dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--no-parallel
dh_builddeb -O--no-parallel
-dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.8-1_arm64.deb'.
dpkg-deb: building package 'spoa' in '../spoa_4.0.8-1_arm64.deb'.
+dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.8-1_arm64.deb'.
dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.0.8-1_arm64.deb'.
-dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.8-1_arm64.deb'.
dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.0.8-1_arm64.deb'.
+dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.8-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../spoa_4.0.8-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../spoa_4.0.8-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -685,12 +703,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/27448/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/28582 and its subdirectories
-I: Current time: Mon May 13 13:14:04 -12 2024
-I: pbuilder-time-stamp: 1715649244
+I: removing directory /srv/workspace/pbuilder/27448 and its subdirectories
+I: Current time: Wed Apr 12 08:54:02 +14 2023
+I: pbuilder-time-stamp: 1681239242