Diff of the two buildlogs: -- --- b1/build.log 2023-05-02 13:42:59.504973490 +0000 +++ b2/build.log 2023-05-02 13:44:54.151941054 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 2 01:40:38 -12 2023 -I: pbuilder-time-stamp: 1683034838 +I: Current time: Tue Jun 4 10:06:06 +14 2024 +I: pbuilder-time-stamp: 1717445166 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./vcfanno_0.3.5+ds.orig.tar.xz] I: copying [./vcfanno_0.3.5+ds-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Dec 30 23:49:41 2022 -12 +gpgv: Signature made Sun Jan 1 01:49:41 2023 +14 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vcfanno_0.3.5+ds-1.dsc: no acceptable signature found @@ -27,52 +27,84 @@ dpkg-source: info: applying use-archive-xopen.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4091/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/D01_modify_environment starting +debug: Running on codethink15-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 4 10:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4091' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=27842 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8R1RO05p/pbuilderrc_Q8jW --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8R1RO05p/b1 --logfile b1/build.log vcfanno_0.3.5+ds-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8R1RO05p/pbuilderrc_phhn --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8R1RO05p/b2 --logfile b2/build.log --extrapackages usrmerge vcfanno_0.3.5+ds-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 1 22:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4091/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 3 06:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -208,7 +240,7 @@ Get: 72 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-2 [94.0 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 samtools arm64 1.16.1-1 [580 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 tabix arm64 1.16+ds-3 [427 kB] -Fetched 137 MB in 4s (35.5 MB/s) +Fetched 137 MB in 2s (63.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -518,8 +550,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-1_source.changes +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-1_source.changes dpkg-buildpackage: info: source package vcfanno dpkg-buildpackage: info: source version 0.3.5+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -538,27 +579,27 @@ dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang cd obj-aarch64-linux-gnu && go install -trimpath -v -p 8 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared -encoding +internal/itoa internal/unsafeheader internal/goarch -internal/goos -internal/itoa +encoding internal/goexperiment -math/bits -unicode/utf8 +internal/goos internal/cpu -runtime/internal/syscall -internal/abi runtime/internal/math +math/bits +internal/abi +runtime/internal/syscall runtime/internal/sys +unicode/utf8 internal/race sync/atomic unicode/utf16 unicode container/list crypto/internal/subtle -crypto/subtle math +crypto/subtle crypto/internal/boring/sig vendor/golang.org/x/crypto/cryptobyte/asn1 internal/bytealg @@ -568,92 +609,92 @@ runtime internal/reflectlite sync -internal/singleflight internal/testlog +internal/singleflight math/rand runtime/cgo errors sort internal/oserror +path internal/safefilepath io -path strconv crypto/internal/nistec/fiat syscall vendor/golang.org/x/net/dns/dnsmessage container/heap -strings -hash bytes +hash +strings hash/crc32 crypto/internal/randutil +reflect crypto crypto/rc4 -reflect vendor/golang.org/x/text/transform -github.com/brentp/irelate/interfaces bufio +github.com/brentp/irelate/interfaces regexp/syntax net/http/internal/ascii -time internal/syscall/unix internal/syscall/execenv +time regexp io/fs github.com/BurntSushi/toml/internal context internal/poll embed +os internal/fmtsort encoding/binary -os encoding/base64 -vendor/golang.org/x/crypto/internal/poly1305 crypto/internal/edwards25519/field crypto/cipher crypto/md5 +vendor/golang.org/x/crypto/internal/poly1305 vendor/golang.org/x/crypto/curve25519/internal/field crypto/internal/nistec -encoding/pem -crypto/internal/edwards25519 +fmt +io/ioutil internal/godebug path/filepath -io/ioutil -fmt +crypto/internal/edwards25519 +encoding/pem +internal/intern crypto/internal/boring crypto/des -internal/intern +net/netip vendor/golang.org/x/crypto/chacha20 crypto/aes crypto/sha512 +os/exec crypto/hmac crypto/sha1 crypto/sha256 -net/netip -os/exec vendor/golang.org/x/crypto/chacha20poly1305 vendor/golang.org/x/crypto/hkdf +net encoding/hex -flag -net/url encoding/csv +net/url +flag log compress/flate encoding/json github.com/pkg/errors github.com/yuin/gopher-lua/ast +github.com/brentp/vcfgo github.com/yuin/gopher-lua/pm math/big -github.com/brentp/vcfgo -net vendor/golang.org/x/crypto/curve25519 -github.com/yuin/gopher-lua/parse vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/text/unicode/norm +github.com/yuin/gopher-lua/parse compress/gzip -github.com/biogo/hts/bgzf github.com/klauspost/compress/flate +vendor/golang.org/x/text/unicode/norm +github.com/biogo/hts/bgzf github.com/BurntSushi/toml github.com/biogo/hts/bgzf/index vendor/golang.org/x/text/secure/bidirule @@ -663,6 +704,9 @@ vendor/golang.org/x/net/http2/hpack github.com/biogo/hts/tabix github.com/biogo/hts/sam +github.com/klauspost/pgzip +mime +vendor/golang.org/x/net/idna crypto/rand crypto/elliptic crypto/internal/boring/bbig @@ -670,15 +714,12 @@ crypto/ed25519 crypto/rsa crypto/dsa -vendor/golang.org/x/net/idna -github.com/klauspost/pgzip -mime mime/quotedprintable -vendor/golang.org/x/crypto/cryptobyte -crypto/x509/pkix -github.com/biogo/hts/bam net/http/internal os/user +github.com/biogo/hts/bam +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix github.com/brentp/irelate/parsers crypto/ecdsa github.com/brentp/bix @@ -701,10 +742,10 @@ cd obj-aarch64-linux-gnu && go test -vet=off -v -p 8 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared testing: warning: no tests to run PASS -ok github.com/brentp/vcfanno 0.021s [no tests to run] +ok github.com/brentp/vcfanno 0.008s [no tests to run] === RUN Test OK: 13 passed ---- PASS: Test (0.24s) +--- PASS: Test (0.03s) === RUN TestHandleA --- PASS: TestHandleA (0.00s) === RUN TestHandlAMulti @@ -712,7 +753,7 @@ === RUN TestByAlt --- PASS: TestByAlt (0.00s) PASS -ok github.com/brentp/vcfanno/api 0.268s +ok github.com/brentp/vcfanno/api 0.044s ? github.com/brentp/vcfanno/shared [no test files] create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang @@ -830,8 +871,8 @@ dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang -dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-1_arm64.deb'. dpkg-deb: building package 'vcfanno-dbgsym' in '../vcfanno-dbgsym_0.3.5+ds-1_arm64.deb'. +dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-1_arm64.deb'. dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-1_arm64.changes @@ -840,12 +881,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27842/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4091 and its subdirectories -I: Current time: Tue May 2 01:42:58 -12 2023 -I: pbuilder-time-stamp: 1683034978 +I: removing directory /srv/workspace/pbuilder/27842 and its subdirectories +I: Current time: Tue Jun 4 10:07:53 +14 2024 +I: pbuilder-time-stamp: 1717445273