Diff of the two buildlogs:
--
--- b1/build.log 2023-05-09 22:29:22.138691361 +0000
+++ b2/build.log 2023-05-09 22:47:36.882788828 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Tue May 9 09:13:24 -12 2023
-I: pbuilder-time-stamp: 1683666804
+I: Current time: Wed May 10 12:30:16 +14 2023
+I: pbuilder-time-stamp: 1683671416
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./kmc_3.2.1+dfsg.orig.tar.xz]
I: copying [./kmc_3.2.1+dfsg-1.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Sun Jan 16 02:40:06 2022 -12
+gpgv: Signature made Mon Jan 17 04:40:06 2022 +14
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
@@ -34,135 +34,167 @@
dpkg-source: info: applying support-mixed-march.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/12339/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D01_modify_environment starting
+debug: Running on jtx1c.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 10 12:31 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='armhf'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
- DISTRIBUTION='bookworm'
- HOME='/root'
- HOST_ARCH='armhf'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+ BASH_VERSION='5.2.15(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=armhf
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
+ DIRSTACK=()
+ DISTRIBUTION=bookworm
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=arm
+ HOST_ARCH=armhf
IFS='
'
- INVOCATION_ID='50a9aadf19364a438639a32995b94960'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='12339'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=09bcaf94523a48aeb9fab35c5d39c40a
+ LANG=C
+ LANGUAGE=it_CH:it
+ LC_ALL=C
+ MACHTYPE=arm-unknown-linux-gnueabihf
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnueabihf
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=20472
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/pbuilderrc_Q2bn --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/b1 --logfile b1/build.log kmc_3.2.1+dfsg-1.dsc'
- SUDO_GID='113'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://10.0.0.15:3142/'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/pbuilderrc_eV4O --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.svOm8Pta/b2 --logfile b2/build.log --extrapackages usrmerge kmc_3.2.1+dfsg-1.dsc'
+ SUDO_GID=114
+ SUDO_UID=108
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://10.0.0.15:3142/
I: uname -a
- Linux cbxi4pro0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux
+ Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux
I: ls -l /bin
total 5072
- -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2
- -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
- -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat
- -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod
- -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp
- -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash
- -rwxr-xr-x 1 root root 133220 Sep 20 2022 date
- -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd
- -rwxr-xr-x 1 root root 68104 Sep 20 2022 df
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir
- -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
- -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 false
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
- -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt
- -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount
- -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
- -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
- -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip
- -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname
- -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln
- -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls
- -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk
- -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir
- -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod
- -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp
- -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more
- -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount
- -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd
- lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink
- -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir
- -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts
- -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed
- lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty
- -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync
- -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar
- -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile
- -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 true
- -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server
- -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount
- -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir
- -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
- -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
- -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
- -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
- -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
- -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
- -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
- -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
-I: user script /srv/workspace/pbuilder/12339/tmp/hooks/D02_print_environment finished
+ -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2
+ -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
+ -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat
+ -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod
+ -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp
+ -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash
+ -rwxr-xr-x 1 root root 133220 Sep 21 2022 date
+ -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd
+ -rwxr-xr-x 1 root root 68104 Sep 21 2022 df
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir
+ -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
+ -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 false
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
+ -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt
+ -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount
+ -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
+ -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
+ -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip
+ -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname
+ -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln
+ -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls
+ -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
+ -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir
+ -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod
+ -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp
+ -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more
+ -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount
+ -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd
+ lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink
+ -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir
+ -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts
+ -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed
+ lrwxrwxrwx 1 root root 9 May 10 12:31 sh -> /bin/bash
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty
+ -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync
+ -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar
+ -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile
+ -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 true
+ -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server
+ -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount
+ -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir
+ -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
+ -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
+ -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
+ -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
+ -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
+ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
+ -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
+ -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -267,7 +299,7 @@
Get: 53 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB]
Get: 54 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB]
Get: 55 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB]
-Fetched 27.9 MB in 5s (5543 kB/s)
+Fetched 27.9 MB in 2s (11.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19329 files and directories currently installed.)
@@ -508,8 +540,19 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/kmc-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.1+dfsg-1_source.changes
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+removed '/etc/unsupported-skip-usrmerge-conversion'
+The system has been successfully converted.
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/kmc-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.2.1+dfsg-1_source.changes
dpkg-buildpackage: info: source package kmc
dpkg-buildpackage: info: source version 3.2.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
@@ -523,7 +566,7 @@
rm -rf /build/kmc-3.2.1+dfsg/debian/man_src/*.html /build/kmc-3.2.1+dfsg/debian/man_src/*.?
rm -rf /build/kmc-3.2.1+dfsg/debian/man
dh_auto_clean --
- make -j3 clean
+ make -j4 clean
make[2]: Entering directory '/build/kmc-3.2.1+dfsg'
rm -f kmc_core/*.o
rm -f kmc_api/*.o
@@ -557,7 +600,7 @@
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/kmc-3.2.1+dfsg'
dh_auto_build
- make -j3 "INSTALL=install --strip-program=true"
+ make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/kmc-3.2.1+dfsg'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o
@@ -566,6 +609,8 @@
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/timer.cpp -o kmc_core/timer.o
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/develop.cpp -o kmc_core/develop.o
In file included from /usr/include/c++/12/set:60,
from kmc_core/queues.h:19,
from kmc_core/params.h:16,
@@ -597,8 +642,6 @@
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/timer.cpp -o kmc_core/timer.o
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/develop.cpp -o kmc_core/develop.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kmer.cpp -o kmc_core/kmer.o
@@ -674,6 +717,7 @@
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char (&)[12], long long unsigned int&}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >::iterator' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char (&)[12], long long unsigned int&}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long unsigned int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> >]',
@@ -691,9 +735,9 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long unsigned int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long unsigned int> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o
kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)':
kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
117 | fread(marker_start, 1, 3, file);
@@ -733,7 +777,8 @@
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFVariables*, std::vector<CKFFVariables> >' changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o
In file included from /usr/include/c++/12/queue:62,
from kmc_core/raduls_impl.h:15:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>*, vector<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, allocator<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<1>, int>(CKmer<1>*, CKmer<1>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>)> >]':
@@ -742,26 +787,76 @@
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>*, vector<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, allocator<tuple<CKmer<1>*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<1>, long long int>(CKmer<1>*, CKmer<1>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>*, std::vector<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, std::allocator<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1
+In file included from /usr/include/c++/12/vector:70,
+ from kmc_tools/operations.h:24,
+ from kmc_tools/expression_node.h:14,
+ from kmc_tools/parser.h:14,
+ from kmc_tools/parameters_parser.h:15,
+ from kmc_tools/parameters_parser.cpp:11:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CInputDesc>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:64:
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]',
+ inlined from 'void CParametersParser::read_input_desc()' at kmc_tools/parameters_parser.cpp:251:29:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CInputDesc*, std::vector<CInputDesc> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, vector<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, allocator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<2>, int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, std::vector<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, std::allocator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CTransformOutputDesc>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, vector<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, allocator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<2>, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, std::vector<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, std::allocator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]',
+ inlined from 'bool CParametersParser::read_output_for_transform()' at kmc_tools/parameters_parser.cpp:339:43:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CTransformOutputDesc*, std::vector<CTransformOutputDesc> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, vector<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, allocator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<3>, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, std::vector<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, std::allocator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, vector<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, allocator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<3>, long long int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, std::vector<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, std::allocator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator<CSimpleOutputDesc>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CSimpleOutputDesc>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>*, vector<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, allocator<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<4>, int>(CKmer<4>*, CKmer<4>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>*, std::vector<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, std::allocator<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator<CSimpleOutputDesc>]',
+ inlined from 'bool CParametersParser::read_output_desc_for_simple()' at kmc_tools/parameters_parser.cpp:504:40:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CSimpleOutputDesc*, std::vector<CSimpleOutputDesc> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>*, vector<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, allocator<tuple<CKmer<4>*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<4>, long long int>(CKmer<4>*, CKmer<4>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>*, std::vector<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int>, std::allocator<std::tuple<CKmer<4>*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, vector<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, allocator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<5>, int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, std::vector<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, std::allocator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, vector<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, allocator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<5>, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, std::vector<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, std::allocator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKmerFileHeader>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>*, vector<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, allocator<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<6>, int>(CKmer<6>*, CKmer<6>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>*, std::vector<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, std::allocator<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>*, vector<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, allocator<tuple<CKmer<6>*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<6>, long long int>(CKmer<6>*, CKmer<6>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>*, std::vector<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int>, std::allocator<std::tuple<CKmer<6>*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:754:26:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKmerFileHeader*, std::vector<CKmerFileHeader> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:768:27:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKmerFileHeader*, std::vector<CKmerFileHeader> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>*, vector<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>, allocator<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<7>, int>(CKmer<7>*, CKmer<7>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>, tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>*, std::vector<std::tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>, std::allocator<std::tuple<CKmer<7>*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>*, vector<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>, allocator<tuple<CKmer<7>*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<7>, long long int>(CKmer<7>*, CKmer<7>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>, tuple<CKmer<7>*, CKmer<7>*, long long unsigned int>)> >]':
@@ -770,6 +865,7 @@
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>*, std::vector<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>*, vector<tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, allocator<tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<8>, long long int>(CKmer<8>*, CKmer<8>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>*, std::vector<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o
In file included from /usr/include/c++/12/algorithm:61,
from kmc_core/raduls_impl.h:19:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, vector<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, allocator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<5>, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>)> >]':
@@ -841,6 +937,15 @@
kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
106 | fread(raw, 1, 4, file);
| ~~~~~^~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:70,
+ from kmc_tools/operations.h:24,
+ from kmc_tools/expression_node.h:14,
+ from kmc_tools/parser.h:14,
+ from kmc_tools/parser.cpp:11:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CInputDesc>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
In file included from kmc_tools/db_reader_factory.h:8,
from kmc_tools/expression_node.h:19,
from kmc_tools/parser.h:14,
@@ -874,6 +979,18 @@
kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
273 | fread(tmp, 1, record_size, file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:70,
+ from /usr/include/c++/12/queue:61:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'CRangeQueue::CRangeQueue(uint32, uint64)' at kmc_core/first_dispatch.h:58:25:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, unsigned int>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int> > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq<SIZE>::reload_buff() [with unsigned int SIZE = 7]':
kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1377 | fread(buff, 1, buff_bytes, file);
@@ -1070,18 +1187,6 @@
kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
273 | fread(tmp, 1, record_size, file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from /usr/include/c++/12/queue:61:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'CRangeQueue::CRangeQueue(uint32, uint64)' at kmc_core/first_dispatch.h:58:25:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, unsigned int>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int> > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>}; _Tp = std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -1132,6 +1237,12 @@
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>*, std::vector<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>, std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:64:
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]',
+ inlined from 'void CParser::parseInputLine(const std::string&)' at kmc_tools/parser.cpp:147:31:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CInputDesc*, std::vector<CInputDesc> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>}; _Tp = std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int>; _Alloc = std::allocator<std::tuple<CKmer<8>*, CKmer<8>*, long long unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<8>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:685:26:
@@ -1266,6 +1377,7 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, std::vector<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, std::allocator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, vector<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, allocator<tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<5>, long long int>(CKmer<5>*, CKmer<5>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>)> >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>*, std::vector<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int>, std::allocator<std::tuple<CKmer<5>*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
@@ -1566,6 +1678,7 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, std::vector<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, std::allocator<std::tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, vector<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, allocator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<3>, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>)> >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>*, vector<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, allocator<tuple<CKmer<3>*, CKmer<3>*, long long unsigned int> > > >; _Compare = RadulsSort::RadixSortMSD_impl<CKmer<3>, int>(CKmer<3>*, CKmer<3>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>, tuple<CKmer<3>*, CKmer<3>*, long long unsigned int>)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<3>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:713:8:
@@ -1602,6 +1715,14 @@
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
+In file included from /usr/include/c++/12/queue:62,
+ from kmc_tools/queues.h:20,
+ from kmc_tools/kmc1_db_reader.h:18,
+ from kmc_tools/db_reader_factory.h:6:
+/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
+/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
+ | ^~~~~~~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, vector<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, allocator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<2>, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>)> >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, vector<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, allocator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<RadulsSort::RadixSortMSD_impl<CKmer<2>, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, vector<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, allocator<tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >; _Compare = RadulsSort::RadixSortMSD_impl<CKmer<2>, long long int>(CKmer<2>*, CKmer<2>*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64)::<lambda(tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
@@ -1612,6 +1733,14 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>*, std::vector<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>, std::allocator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/algorithm:61,
+ from kmc_tools/kmc2_db_reader.h:24,
+ from kmc_tools/db_reader_factory.h:7:
+/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
+/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1802 | __insertion_sort(_RandomAccessIterator __first,
+ | ^~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>}; _Tp = std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>; _Alloc = std::allocator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int>; _Alloc = std::allocator<std::tuple<CKmer<2>*, CKmer<2>*, long long unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void RadulsSort::RadixSortMSD_impl(KMER_T*, KMER_T*, uint64, uint32, uint32, CMemoryPool*, bool, uint64, uint64) [with KMER_T = CKmer<2>; COUNTER_TYPE = int]' at kmc_core/raduls_impl.h:685:26:
@@ -1690,22 +1819,7 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>*, std::vector<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int>, std::allocator<std::tuple<CKmer<1>*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/queue:62,
- from kmc_tools/queues.h:20,
- from kmc_tools/kmc1_db_reader.h:18,
- from kmc_tools/db_reader_factory.h:6:
-/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
-/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
- | ^~~~~~~~~~~~~
-In file included from /usr/include/c++/12/algorithm:61,
- from kmc_tools/kmc2_db_reader.h:24,
- from kmc_tools/db_reader_factory.h:7:
-/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
-/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1802 | __insertion_sort(_RandomAccessIterator __first,
- | ^~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /usr/include/c++/12/ext/algorithm:61,
@@ -1741,6 +1855,7 @@
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKmerBinSorter<8>::ExpandKxmersBoth(uint64)::<lambda(const pair<long long unsigned int, long long unsigned int>&, const pair<long long unsigned int, long long unsigned int>&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
@@ -1774,8 +1889,142 @@
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' changed in GCC 7.1
+In file included from /usr/include/c++/12/vector:70,
+ from kmc_tools/percent_progress.h:15,
+ from kmc_tools/percent_progress.cpp:11:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CPercentProgress::CDisplayItem>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]',
+ inlined from 'uint32 CPercentProgress::RegisterItem(const std::string&, uint64)' at kmc_tools/percent_progress.cpp:24:20:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CPercentProgress::CDisplayItem*, std::vector<CPercentProgress::CDisplayItem> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CPercentProgress::CDisplayItem>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]',
+ inlined from 'uint32 CPercentProgress::RegisterItem(uint64)' at kmc_tools/percent_progress.cpp:31:20:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CPercentProgress::CDisplayItem*, std::vector<CPercentProgress::CDisplayItem> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o
+kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)':
+kmc_tools/kff_info_reader.cpp:34:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 34 | fread(marker, 1, 3, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:39:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 39 | fread(marker, 1, 3, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:45:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 45 | fread(footer_size_str, 1, 12, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:54:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 54 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:61:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 61 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:67:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 67 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:76:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 76 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:89:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 89 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:92:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 92 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 96 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:99:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 99 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:105:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 105 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:111:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 111 | fread(tmp.data(), 1, sizeof(free_size), file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:116:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 116 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:136:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 136 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:141:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 141 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:150:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 150 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:154:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 154 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:161:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 161 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:173:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 173 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:182:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 182 | fread(tmp.data(), 1, 1, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()':
+kmc_tools/kff_info_reader.cpp:207:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 207 | fread(tmp.data(), 1, sizeof(uint64_t), file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:214:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 214 | fread(tmp.data(), 1, sizeof(uint64_t), file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()':
+kmc_tools/kff_info_reader.cpp:253:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 253 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()':
+kmc_tools/kff_info_reader.cpp:288:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 288 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+kmc_tools/kff_info_reader.cpp:290:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 290 | fread(tmp.data(), 1, 8, file);
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/bits/stl_algo.h:60,
+ from /usr/include/c++/12/algorithm:61,
+ from kmc_tools/kff_info_reader.cpp:7:
+/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Distance = int; _Tp = CKFFIndexPair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
+/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+ 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
+ | ^~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
+/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+ 1802 | __insertion_sort(_RandomAccessIterator __first,
+ | ^~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
+/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+ 1908 | __introsort_loop(_RandomAccessIterator __first,
+ | ^~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+ 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:70,
+ from kmc_tools/kff_info_reader.h:3,
+ from kmc_tools/kff_info_reader.cpp:1:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator<CKFFIndexPair>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFIndexPair>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFDataSection&}; _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFDataSection>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/12/map:61,
from kmc_core/queues.h:20:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::tuple<unsigned int, long long unsigned int, _IO_FILE*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int>; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::tuple<unsigned int, long long unsigned int, _IO_FILE*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int> > >]',
@@ -1796,52 +2045,90 @@
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from kmc_tools/kmc_tools.cpp:12:
-/usr/include/c++/12/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]':
-/usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type 'std::vector<CTransformOutputDesc>::iterator' changed in GCC 7.1
- 175 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
+In file included from /usr/include/c++/12/vector:64:
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]',
+ inlined from 'void CKFFInfoReader::ReadMinimizerSection()' at kmc_tools/kff_info_reader.cpp:296:31:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]',
+ inlined from 'void CKFFInfoReader::ReadRawSection()' at kmc_tools/kff_info_reader.cpp:260:31:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:63:
+/usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]':
+/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+ 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
+ | ^~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFVariables>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
-/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1908 | __introsort_loop(_RandomAccessIterator __first,
- | ^~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
-/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
-/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1932 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
- | ^~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
-/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]',
+ inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
+ inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
+ inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]' at /usr/include/c++/12/bits/stl_vector.h:601:31,
+ inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8,
+ inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4,
+ inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17,
+ inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]' at /usr/include/c++/12/bits/vector.tcc:462:28:
+/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+ 137 | { return std::__do_uninit_copy(__first, __last, __result); }
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]',
+ inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
+ inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
+ inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]' at /usr/include/c++/12/bits/stl_vector.h:601:31,
+ inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8,
+ inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4,
+ inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17,
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]' at /usr/include/c++/12/bits/stl_vector.h:1281:30,
+ inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34:
+/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
+ 137 | { return std::__do_uninit_copy(__first, __last, __result); }
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]',
+ inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFVariables*, std::vector<CKFFVariables> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator<CKFFIndexPair>]',
+ inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:157:22:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]',
+ inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
+ inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11:
+/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
-In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
- inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31:
-/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]',
+ inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
+ inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
+ inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11:
+/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator<CDumpWriterForTransform<1> >]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<1>, std::allocator<CDumpWriterForTransform<1> > >::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator<CDumpWriterForTransform<1> >]':
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<1>*, std::vector<CDumpWriterForTransform<1>, std::allocator<CDumpWriterForTransform<1> > > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o
+ranlib libkmc.a
+mkdir -p bin
+g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2
+In file included from /usr/include/c++/12/vector:70,
+ from kmc_tools/kmc_tools.cpp:12:
+/usr/include/c++/12/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]':
+/usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type 'std::vector<CTransformOutputDesc>::iterator' changed in GCC 7.1
+ 175 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]',
inlined from 'CMemoryBins::init(uint32, uint32, int64, int64, int64, int64, int64)::<lambda()>' at kmc_core/queues.h:1286:28,
inlined from 'CThrowingOnCancelConditionVariable::wait<CMemoryBins::init(uint32, uint32, int64, int64, int64, int64, int64)::<lambda()> >(std::unique_lock<std::mutex>&, CMemoryBins::init(uint32, uint32, int64, int64, int64, int64, int64)::<lambda()>)::<lambda()>' at kmc_core/critical_error_handler.h:21:20,
@@ -1930,6 +2217,46 @@
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
+/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1908 | __introsort_loop(_RandomAccessIterator __first,
+ | ^~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]':
+/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1932 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
+ | ^~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1932:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1937 | std::__introsort_loop(__first, __last,
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
+ 1938 | std::__lg(__last - __first) * 2,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1939 | __comp);
+ | ~~~~~~~
+In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
+ inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31:
+/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1854 | std::__insertion_sort(__first, __last, __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator<CDumpWriterForTransform<1> >]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<1>, std::allocator<CDumpWriterForTransform<1> > >::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<1>; _Alloc = std::allocator<CDumpWriterForTransform<1> >]':
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<1>*, std::vector<CDumpWriterForTransform<1>, std::allocator<CDumpWriterForTransform<1> > > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from kmc_core/kmc_runner.h:14,
from kmc_core/kmc_runner.cpp:11:
@@ -1975,12 +2302,10 @@
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<7>; _Alloc = std::allocator<CDumpWriterForTransform<7> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<7>, std::allocator<CDumpWriterForTransform<7> > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -2072,6 +2397,14 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator<CDumpWriterForTransform<6> >]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<6>, std::allocator<CDumpWriterForTransform<6> > >::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator<CDumpWriterForTransform<6> >]':
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<6>*, std::vector<CDumpWriterForTransform<6>, std::allocator<CDumpWriterForTransform<6> > > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -2108,48 +2441,6 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from kmc_tools/operations.h:24,
- from kmc_tools/expression_node.h:14,
- from kmc_tools/parser.h:14,
- from kmc_tools/parameters_parser.h:15,
- from kmc_tools/parameters_parser.cpp:11:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CInputDesc>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator<CDumpWriterForTransform<6> >]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<6>, std::allocator<CDumpWriterForTransform<6> > >::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:64:
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]',
- inlined from 'void CParametersParser::read_input_desc()' at kmc_tools/parameters_parser.cpp:251:29:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CInputDesc*, std::vector<CInputDesc> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<6>; _Alloc = std::allocator<CDumpWriterForTransform<6> >]':
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<6>*, std::vector<CDumpWriterForTransform<6>, std::allocator<CDumpWriterForTransform<6> > > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CTransformOutputDesc>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]',
- inlined from 'bool CParametersParser::read_output_for_transform()' at kmc_tools/parameters_parser.cpp:339:43:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CTransformOutputDesc*, std::vector<CTransformOutputDesc> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator<CSimpleOutputDesc>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CSimpleOutputDesc>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator<CSimpleOutputDesc>]',
- inlined from 'bool CParametersParser::read_output_desc_for_simple()' at kmc_tools/parameters_parser.cpp:504:40:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CSimpleOutputDesc*, std::vector<CSimpleOutputDesc> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 6]' at kmc_core/kmc.h:276:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
@@ -2175,23 +2466,6 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKmerFileHeader>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:754:26:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKmerFileHeader*, std::vector<CKmerFileHeader> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CKmerFileHeader}; _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = CKmerFileHeader; _Alloc = std::allocator<CKmerFileHeader>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'bool CParametersParser::validate_input_dbs()' at kmc_tools/parameters_parser.cpp:768:27:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKmerFileHeader*, std::vector<CKmerFileHeader> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -2208,6 +2482,20 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'void CBinBufProvider<SIZE>::init(std::vector<CBin<SIZE> >&) [with unsigned int SIZE = 7]' at kmc_tools/kmc2_db_reader.h:300:17:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >]':
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 5]' at kmc_core/kmc.h:276:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
@@ -2233,20 +2521,6 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'void CBinBufProvider<SIZE>::init(std::vector<CBin<SIZE> >&) [with unsigned int SIZE = 7]' at kmc_tools/kmc2_db_reader.h:300:17:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> >]':
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, unsigned int, bool> > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'bool CTools<SIZE>::filter() [with unsigned int SIZE = 1]' at kmc_tools/kmc_tools.cpp:252:24:
@@ -2272,26 +2546,11 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<5>*, std::vector<CDumpWriterForTransform<5>, std::allocator<CDumpWriterForTransform<5> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from kmc_tools/operations.h:24,
- from kmc_tools/expression_node.h:14,
- from kmc_tools/parser.h:14,
- from kmc_tools/parser.cpp:11:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CInputDesc&}; _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CInputDesc>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 1]' at kmc_core/kmc.h:1491:6:
/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:64:
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CInputDesc; _Alloc = std::allocator<CInputDesc>]',
- inlined from 'void CParser::parseInputLine(const std::string&)' at kmc_tools/parser.cpp:147:31:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CInputDesc*, std::vector<CInputDesc> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'bool CTools<SIZE>::filter() [with unsigned int SIZE = 7]' at kmc_tools/kmc_tools.cpp:252:24:
@@ -2303,6 +2562,20 @@
/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'void CBinBufProvider<SIZE>::init(std::vector<CBin<SIZE> >&) [with unsigned int SIZE = 5]' at kmc_tools/kmc2_db_reader.h:300:17:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator<CDumpWriterForTransform<4> >]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<4>, std::allocator<CDumpWriterForTransform<4> > >::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator<CDumpWriterForTransform<4> >]':
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<4>*, std::vector<CDumpWriterForTransform<4>, std::allocator<CDumpWriterForTransform<4> > > >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 4]' at kmc_core/kmc.h:276:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
@@ -2328,20 +2601,6 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'void CBinBufProvider<SIZE>::init(std::vector<CBin<SIZE> >&) [with unsigned int SIZE = 5]' at kmc_tools/kmc2_db_reader.h:300:17:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator<CDumpWriterForTransform<4> >]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<4>, std::allocator<CDumpWriterForTransform<4> > >::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<4>; _Alloc = std::allocator<CDumpWriterForTransform<4> >]':
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<4>*, std::vector<CDumpWriterForTransform<4>, std::allocator<CDumpWriterForTransform<4> > > >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:63:
/usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]':
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
@@ -2370,7 +2629,6 @@
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFVariables*, std::vector<CKFFVariables> >' changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o
In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFVariables*, std::vector<CKFFVariables> >; _ForwardIterator = CKFFVariables*; bool _TrivialValueTypes = false]',
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFVariables*, vector<CKFFVariables> >; _ForwardIterator = CKFFVariables*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFVariables*, vector<CKFFVariables> >; _ForwardIterator = CKFFVariables*; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
@@ -2437,32 +2695,6 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, long long unsigned int, bool>*, std::vector<std::tuple<long long unsigned int, long long unsigned int, bool> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:276:24:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
- inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8:
-/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1937 | std::__introsort_loop(__first, __last,
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
- 1938 | std::__lg(__last - __first) * 2,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1939 | __comp);
- | ~~~~~~~
-In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
- inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
- inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8:
-/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
- 1854 | std::__insertion_sort(__first, __last, __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {CTransformOutputDesc&}; _Tp = CDumpWriterForTransform<2>; _Alloc = std::allocator<CDumpWriterForTransform<2> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CDumpWriterForTransform<2>, std::allocator<CDumpWriterForTransform<2> > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -2471,11 +2703,6 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CDumpWriterForTransform<2>*, std::vector<CDumpWriterForTransform<2>, std::allocator<CDumpWriterForTransform<2> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 8]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]',
inlined from 'bool CTools<SIZE>::transform() [with unsigned int SIZE = 5]' at kmc_tools/kmc_tools.cpp:428:45,
inlined from 'bool CTools<SIZE>::Process() [with unsigned int SIZE = 5]' at kmc_tools/kmc_tools.cpp:531:20:
@@ -2493,7 +2720,6 @@
/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<long long unsigned int, long long unsigned int, bool>}; _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::tuple<long long unsigned int, long long unsigned int, bool>; _Alloc = std::allocator<std::tuple<long long unsigned int, long long unsigned int, bool> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void CBinBufProvider<SIZE>::init(std::vector<CBin<SIZE> >&) [with unsigned int SIZE = 2]' at kmc_tools/kmc2_db_reader.h:300:17:
@@ -2501,13 +2727,13 @@
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:276:24:
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:276:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8:
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
@@ -2518,246 +2744,13 @@
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8:
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 3]' at kmc_core/kmc.h:280:8:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 7]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o
-In file included from /usr/include/c++/12/vector:70,
- from kmc_tools/percent_progress.h:15,
- from kmc_tools/percent_progress.cpp:11:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CPercentProgress::CDisplayItem>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]',
- inlined from 'uint32 CPercentProgress::RegisterItem(const std::string&, uint64)' at kmc_tools/percent_progress.cpp:24:20:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CPercentProgress::CDisplayItem*, std::vector<CPercentProgress::CDisplayItem> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CPercentProgress::CDisplayItem>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator<CPercentProgress::CDisplayItem>]',
- inlined from 'uint32 CPercentProgress::RegisterItem(uint64)' at kmc_tools/percent_progress.cpp:31:20:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CPercentProgress::CDisplayItem*, std::vector<CPercentProgress::CDisplayItem> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 6]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)':
-kmc_tools/kff_info_reader.cpp:34:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 34 | fread(marker, 1, 3, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:39:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 39 | fread(marker, 1, 3, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:45:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 45 | fread(footer_size_str, 1, 12, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:54:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 54 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:61:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 61 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:67:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 67 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:76:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 76 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:89:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 89 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:92:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 92 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 96 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:99:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 99 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:105:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 105 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:111:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 111 | fread(tmp.data(), 1, sizeof(free_size), file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:116:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 116 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:136:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 136 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:141:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 141 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:150:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 150 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:154:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 154 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:161:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 161 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:173:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 173 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:182:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 182 | fread(tmp.data(), 1, 1, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()':
-kmc_tools/kff_info_reader.cpp:207:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 207 | fread(tmp.data(), 1, sizeof(uint64_t), file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:214:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 214 | fread(tmp.data(), 1, sizeof(uint64_t), file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()':
-kmc_tools/kff_info_reader.cpp:253:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 253 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()':
-kmc_tools/kff_info_reader.cpp:288:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 288 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-kmc_tools/kff_info_reader.cpp:290:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
- 290 | fread(tmp.data(), 1, 8, file);
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/bits/stl_algo.h:60,
- from /usr/include/c++/12/algorithm:61,
- from kmc_tools/kff_info_reader.cpp:7:
-/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Distance = int; _Tp = CKFFIndexPair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
-/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
- | ^~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
-/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1802 | __insertion_sort(_RandomAccessIterator __first,
- | ^~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
-/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]':
-/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1908 | __introsort_loop(_RandomAccessIterator __first,
- | ^~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
-/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from kmc_tools/kff_info_reader.h:3,
- from kmc_tools/kff_info_reader.cpp:1:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator<CKFFIndexPair>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFIndexPair>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFDataSection&}; _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFDataSection>::iterator' changed in GCC 7.1
-In file included from /usr/include/c++/12/vector:64:
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]',
- inlined from 'void CKFFInfoReader::ReadMinimizerSection()' at kmc_tools/kff_info_reader.cpp:296:31:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]',
- inlined from 'void CKFFInfoReader::ReadRawSection()' at kmc_tools/kff_info_reader.cpp:260:31:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:63:
-/usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]':
-/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
- 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
- | ^~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<CKFFVariables>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]',
- inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
- inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
- inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]' at /usr/include/c++/12/bits/stl_vector.h:601:31,
- inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8,
- inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4,
- inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17,
- inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]' at /usr/include/c++/12/bits/vector.tcc:462:28:
-/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
- 137 | { return std::__do_uninit_copy(__first, __last, __result); }
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; bool _TrivialValueTypes = false]',
- inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
- inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const CKFFDataSection*, vector<CKFFDataSection> >; _ForwardIterator = CKFFDataSection*; _Tp = CKFFDataSection]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
- inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CKFFDataSection; _Alloc = std::allocator<CKFFDataSection>]' at /usr/include/c++/12/bits/stl_vector.h:601:31,
- inlined from 'CKFFVariables::CKFFVariables(const CKFFVariables&)' at kmc_tools/kff_info_reader.h:38:8,
- inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/new_allocator.h:175:4,
- inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/12/bits/alloc_traits.h:516:17,
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]' at /usr/include/c++/12/bits/stl_vector.h:1281:30,
- inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34:
-/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const CKFFDataSection*, std::vector<CKFFDataSection> >' changed in GCC 7.1
- 137 | { return std::__do_uninit_copy(__first, __last, __result); }
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator<CKFFVariables>]',
- inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:232:34:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFVariables*, std::vector<CKFFVariables> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {char&, long long int}; _Tp = CKFFIndexPair; _Alloc = std::allocator<CKFFIndexPair>]',
- inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:157:22:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]',
- inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11:
-/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1937 | std::__introsort_loop(__first, __last,
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
- 1938 | std::__lg(__last - __first) * 2,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1939 | __comp);
- | ~~~~~~~
-In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]',
- inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
- inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<CKFFIndexPair*, vector<CKFFIndexPair> >; _Compare = CKFFInfoReader::CKFFInfoReader(const std::string&)::<lambda(const auto:1&, const auto:2&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
- inlined from 'CKFFInfoReader::CKFFInfoReader(const std::string&)' at kmc_tools/kff_info_reader.cpp:165:11:
-/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CKFFIndexPair*, std::vector<CKFFIndexPair> >' changed in GCC 7.1
- 1854 | std::__insertion_sort(__first, __last, __comp);
- | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o
-ranlib libkmc.a
-mkdir -p bin
-g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 5]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 4]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'bool CTools<SIZE>::filter() [with unsigned int SIZE = 3]' at kmc_tools/kmc_tools.cpp:252:24:
@@ -2770,12 +2763,7 @@
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 3]' at kmc_core/kmc.h:1491:6:
-/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
- 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
- inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 2]' at kmc_core/kmc.h:1491:6:
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 8]' at kmc_core/kmc.h:1491:6:
/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -2790,6 +2778,36 @@
/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:276:24:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
+ inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8:
+/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1937 | std::__introsort_loop(__first, __last,
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
+ 1938 | std::__lg(__last - __first) * 2,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1939 | __comp);
+ | ~~~~~~~
+In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]',
+ inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<greater<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
+ inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = greater<long long unsigned int>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
+ inlined from 'void CKMC<SIZE>::SetThreads1Stage(const KMC::Stage1Params&) [with unsigned int SIZE = 2]' at kmc_core/kmc.h:280:8:
+/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
+ 1854 | std::__insertion_sort(__first, __last, __comp);
+ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 7]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator<CTransformOutputDesc>]',
inlined from 'bool CTools<SIZE>::transform() [with unsigned int SIZE = 4]' at kmc_tools/kmc_tools.cpp:428:45,
inlined from 'bool CTools<SIZE>::Process() [with unsigned int SIZE = 4]' at kmc_tools/kmc_tools.cpp:531:20,
@@ -2848,12 +2866,39 @@
/usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<CTransformOutputDesc*, std::vector<CTransformOutputDesc> >' changed in GCC 7.1
1530 | { return _M_erase(begin() + (__position - cbegin())); }
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 6]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 5]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 4]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 3]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In function 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = greater<long long int>]',
+ inlined from 'KMC::Stage2Results CKMC<SIZE>::ProcessStage2_impl() [with unsigned int SIZE = 2]' at kmc_core/kmc.h:1491:6:
+/usr/include/c++/12/bits/stl_algo.h:4853:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
+ 4853 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/list:63,
from kmc_core/queues.h:18:
/usr/include/c++/12/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {int, long long unsigned int&}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/12/bits/stl_list.h:2003:8: note: parameter passing for argument of type 'std::__cxx11::list<std::pair<long long unsigned int, long long unsigned int> >::iterator' changed in GCC 7.1
2003 | _M_insert(iterator __position, _Args&&... __args)
| ^~~~~~~~~
+mkdir -p bin
+g++ -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, long long unsigned int>*, vector<pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CKmerBinSorter<1>::ExpandKxmersBoth(uint64)::<lambda(const pair<long long unsigned int, long long unsigned int>&, const pair<long long unsigned int, long long unsigned int>&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
@@ -2882,8 +2927,6 @@
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-mkdir -p bin
-g++ -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SubArrayDesc}; _Tp = SubArrayDesc; _Alloc = std::allocator<SubArrayDesc>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<SubArrayDesc>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -3185,7 +3228,7 @@
make[2]: Leaving directory '/build/kmc-3.2.1+dfsg'
make[1]: Leaving directory '/build/kmc-3.2.1+dfsg'
dh_auto_test
- rm -fr -- /tmp/dh-xdg-rundir-myc1UOmc
+ rm -fr -- /tmp/dh-xdg-rundir-jv4zSAA_
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars
@@ -3247,25 +3290,27 @@
install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1
install -m0755 -d debian/kmc/usr/share/man/man1/
install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1
- man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1
- man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1
- man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1
+ man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1
+ mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1
+ chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1
+ mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1
+ mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1
mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1
mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1
- mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1
- chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1
+ chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1
+ mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1
mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1
mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1
mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1
- mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1
- mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1
- chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1
+ chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1
mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1
mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1
mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1
mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1
- mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1
- chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1
+ chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1
make[1]: Leaving directory '/build/kmc-3.2.1+dfsg'
dh_perl
dh_link
@@ -3273,25 +3318,25 @@
dh_compress
cd debian/kmc
cd debian/libkmc-dev
- chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
- gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
chmod a-x usr/share/doc/libkmc-dev/changelog.Debian
gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian
+ chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
+ gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
cd '/build/kmc-3.2.1+dfsg'
cd '/build/kmc-3.2.1+dfsg'
dh_fixperms
- find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
- find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+ find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
+ find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing
dh_dwz -a
install -m0755 -d debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf
@@ -3300,22 +3345,22 @@
chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf/kmc.debug
dh_strip -a
strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a
- strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc_core.a
install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4
objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug
+ strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc_core.a
chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug
strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump
objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d4/e9ad250d455ec1c107d741c26d5f2aab863d2f.debug debian/kmc/usr/bin/kmc_dump
- install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96
- objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug
- chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug
- strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools
- objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug debian/kmc/usr/bin/kmc_tools
install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb
objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug
chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug
strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc
objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/fb/a0da771621185fb54c0c4832adf3809abb7ee5.debug debian/kmc/usr/bin/kmc
+ install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96
+ objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug
+ chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug
+ strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools
+ objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/96/01b098b076ec5a41d9b935c6b4acd8ff63200d.debug debian/kmc/usr/bin/kmc_tools
install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/kmc/usr/lib/debug/.dwz
@@ -3328,9 +3373,9 @@
rm -f debian/libkmc-dev/DEBIAN/shlibs
dh_shlibdeps -a
install -m0755 -d debian/kmc/DEBIAN
- dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc
-dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_tools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
+ dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_tools
dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
+dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_tools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb
install -m0755 -d debian/kmc/DEBIAN
@@ -3339,38 +3384,38 @@
debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/kmc-3.2.1+dfsg'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), "
- install -m0755 -d debian/libkmc-dev/DEBIAN
- echo misc:Depends= >> debian/libkmc-dev.substvars
- echo misc:Pre-Depends= >> debian/libkmc-dev.substvars
- dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), "
install -m0755 -d debian/kmc/DEBIAN
echo misc:Depends= >> debian/kmc.substvars
echo misc:Pre-Depends= >> debian/kmc.substvars
install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN
dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=9601b098b076ec5a41d9b935c6b4acd8ff63200d d4e9ad250d455ec1c107d741c26d5f2aab863d2f fba0da771621185fb54c0c4832adf3809abb7ee5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
-dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined
- chmod 0644 -- debian/libkmc-dev/DEBIAN/control
+ install -m0755 -d debian/libkmc-dev/DEBIAN
+ echo misc:Depends= >> debian/libkmc-dev.substvars
+ echo misc:Pre-Depends= >> debian/libkmc-dev.substvars
+ dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), "
chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), "
+dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined
+ chmod 0644 -- debian/libkmc-dev/DEBIAN/control
chmod 0644 -- debian/kmc/DEBIAN/control
make[1]: Leaving directory '/build/kmc-3.2.1+dfsg'
dh_md5sums
install -m0755 -d debian/kmc/DEBIAN
cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
install -m0755 -d debian/libkmc-dev/DEBIAN
+ cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/kmc/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN
- cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums
dh_builddeb
- dpkg-deb --root-owner-group --build debian/libkmc-dev ..
- dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/kmc ..
+ dpkg-deb --root-owner-group --build debian/libkmc-dev ..
dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.1+dfsg-1_armhf.deb'.
-dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'kmc' in '../kmc_3.2.1+dfsg-1_armhf.deb'.
+ dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root ..
+dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.1+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../kmc_3.2.1+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../kmc_3.2.1+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -3378,12 +3423,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/20472/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/12339 and its subdirectories
-I: Current time: Tue May 9 10:29:16 -12 2023
-I: pbuilder-time-stamp: 1683671356
+I: removing directory /srv/workspace/pbuilder/20472 and its subdirectories
+I: Current time: Wed May 10 12:47:32 +14 2023
+I: pbuilder-time-stamp: 1683672452