Diff of the two buildlogs: -- --- b1/build.log 2023-05-03 14:05:37.975229195 +0000 +++ b2/build.log 2023-05-03 14:47:36.568599728 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 3 01:42:32 -12 2023 -I: pbuilder-time-stamp: 1683121352 +I: Current time: Thu May 4 04:06:45 +14 2023 +I: pbuilder-time-stamp: 1683122805 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./libpwizlite_3.0.4.orig.tar.gz] I: copying [./libpwizlite_3.0.4-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Tue Mar 15 02:18:45 2022 -12 +gpgv: Signature made Wed Mar 16 04:18:45 2022 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.4-1.dsc: no acceptable signature found @@ -25,135 +25,167 @@ dpkg-source: info: unpacking libpwizlite_3.0.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3766/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/D01_modify_environment starting +debug: Running on wbq0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 4 04:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='2b00514386c14ef2a39ab1f67d61bc86' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3766' - PS1='# ' - PS2='> ' + INVOCATION_ID=7a825d0b473242a4bba4c04235004e3b + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=7178 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b2g7xkT9/pbuilderrc_8f2q --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b2g7xkT9/b1 --logfile b1/build.log libpwizlite_3.0.4-1.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b2g7xkT9/pbuilderrc_1b2b --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b2g7xkT9/b2 --logfile b2/build.log --extrapackages usrmerge libpwizlite_3.0.4-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1b 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3766/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 4 04:08 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -297,7 +329,7 @@ Get: 88 http://deb.debian.org/debian bookworm/main armhf python3-roman all 3.3-3 [9880 B] Get: 89 http://deb.debian.org/debian bookworm/main armhf python3-docutils all 0.19+dfsg-6 [382 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] -Fetched 58.0 MB in 5s (11.0 MB/s) +Fetched 58.0 MB in 4s (14.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -678,10 +710,17 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libpwizlite-3.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.4-1_source.changes +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/7178/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/libpwizlite-3.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.4-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable @@ -765,15 +804,9 @@ -- Build files have been written to: /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh -baseName: thread_specific_singleton.hpp -dirName: boost/utility -'boost/utility/thread_specific_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/singleton.hpp' -baseName: mutexed_singleton.hpp -dirName: boost/utility -'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' @@ -783,462 +816,468 @@ baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' -baseName: enum.hpp -dirName: boost -'boost/enum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum.hpp' +baseName: mutexed_singleton.hpp +dirName: boost/utility +'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' +baseName: thread_specific_singleton.hpp +dirName: boost/utility +'boost/utility/thread_specific_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' -baseName: convert.hpp +baseName: foreach_field.hpp +dirName: boost +'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/foreach_field.hpp' +baseName: cstdlib.hpp dirName: boost/nowide -'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/convert.hpp' -baseName: fstream.hpp +'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' +baseName: stackstring.hpp dirName: boost/nowide -'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/fstream.hpp' -baseName: cstdio.hpp +'boost/nowide/stackstring.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/stackstring.hpp' +baseName: iostream.hpp dirName: boost/nowide -'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdio.hpp' -baseName: filebuf.hpp +'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/iostream.hpp' +baseName: cenv.hpp dirName: boost/nowide -'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/filebuf.hpp' -baseName: config.hpp +'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cenv.hpp' +baseName: windows.hpp dirName: boost/nowide -'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/config.hpp' +'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/system.hpp' -baseName: cenv.hpp +baseName: convert.hpp dirName: boost/nowide -'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cenv.hpp' -baseName: windows.hpp +'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/convert.hpp' +baseName: config.hpp dirName: boost/nowide -'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/windows.hpp' -baseName: args.hpp +'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/config.hpp' +baseName: cstdio.hpp dirName: boost/nowide -'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/args.hpp' -baseName: iostream.hpp +'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +baseName: fstream.hpp dirName: boost/nowide -'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/iostream.hpp' -baseName: cstdlib.hpp +'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/fstream.hpp' +baseName: filebuf.hpp dirName: boost/nowide -'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' -baseName: stackstring.hpp +'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/filebuf.hpp' +baseName: args.hpp dirName: boost/nowide -'boost/nowide/stackstring.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/stackstring.hpp' +'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/args.hpp' +baseName: enum.hpp +dirName: boost +'boost/enum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/iterator.hpp' -baseName: base.hpp -dirName: boost/enum -'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/base.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/bitfield.hpp' -baseName: foreach_field.hpp -dirName: boost -'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/foreach_field.hpp' -baseName: MzMobilityWindow.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' -baseName: IsotopeTable.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' -baseName: IsotopeCalculator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' -baseName: ChemistryData.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' -baseName: Chemistry.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' -baseName: IsotopeEnvelopeEstimator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -baseName: Ion.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' -baseName: MZTolerance.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' -baseName: Types.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' +baseName: base.hpp +dirName: boost/enum +'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/base.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' -baseName: qr.hpp +baseName: LinearSolver.hpp dirName: pwiz/utility/math -'pwiz/utility/math/qr.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' +'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' +baseName: Types.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' -baseName: erf.hpp +baseName: MatrixInverse.hpp dirName: pwiz/utility/math -'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' +'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' +baseName: Parabola.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/round.hpp' -baseName: HouseholderQR.hpp +baseName: MatchedFilter.hpp dirName: pwiz/utility/math -'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' -baseName: LinearSolver.hpp +'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' +baseName: qr.hpp dirName: pwiz/utility/math -'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' +'pwiz/utility/math/qr.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' +baseName: erf.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' -baseName: MatrixInverse.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' -baseName: Parabola.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' -baseName: MatchedFilter.hpp +baseName: HouseholderQR.hpp dirName: pwiz/utility/math -'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' -baseName: diff.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' -baseName: constants.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' -baseName: scale.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' -baseName: interpolation.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -baseName: copyif.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' -baseName: interpolate.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' -baseName: filter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' -baseName: gaussfilter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' -baseName: preparedata.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -baseName: gauss.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -baseName: breakspec.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' -baseName: masscomparefunctors.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample/utilities -'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -baseName: bin1d.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' +'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' -baseName: virtual_map.hpp +baseName: IsotopeEnvelopeEstimator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' +baseName: Chemistry.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: Ion.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' +baseName: IsotopeCalculator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' +baseName: MzMobilityWindow.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' +baseName: MZTolerance.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' +baseName: ChemistryData.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' +baseName: IsotopeTable.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +baseName: Singleton.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' -baseName: COMInitializer.hpp +'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' +baseName: BinaryData.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' -baseName: MSIHandler.hpp +'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +baseName: Filesystem.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' -baseName: SHA1.h +'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +baseName: DateTime.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1.h' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' -baseName: Exception.hpp +'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' +baseName: IterationListener.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' -baseName: Base64.hpp +'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +baseName: Environment.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' -baseName: Std.hpp +'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' +baseName: IntegerSet.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' -baseName: optimized_lexical_cast.hpp +'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' +baseName: almost_equal.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' -baseName: Timer.hpp +'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' +baseName: SHA1.h dirName: pwiz/utility/misc -'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' -baseName: Filesystem.hpp +'pwiz/utility/misc/SHA1.h' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' +baseName: String.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' -baseName: Once.hpp +'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +baseName: Image.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' -baseName: random_access_compressed_ifstream.hpp +'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +baseName: Container.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' -baseName: cpp_cli_utilities.hpp +'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' +baseName: Stream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' -baseName: unit.hpp +'pwiz/utility/misc/Stream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' +baseName: Once.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' -baseName: endian.hpp +'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' +baseName: Std.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' +'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' -baseName: Container.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' -baseName: ClickwrapPrompter.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' -baseName: Singleton.hpp +baseName: Exception.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' -baseName: Environment.hpp +'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' +baseName: COMInitializer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' +'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' -baseName: String.hpp +baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' -baseName: almost_equal.hpp +'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +baseName: endian.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' +'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' -baseName: Image.hpp +baseName: virtual_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' +baseName: random_access_compressed_ifstream.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' +baseName: mru_list.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +baseName: SHA1_ostream.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' -baseName: BinaryData.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' -baseName: IntegerSet.hpp +baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' -baseName: Stream.hpp +'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' +baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Stream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' -baseName: IterationListener.hpp +'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' +baseName: Timer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' -baseName: TabReader.hpp +'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' +baseName: Base64.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' +'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' -baseName: mru_list.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' -baseName: DateTime.hpp +baseName: unit.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' -baseName: SHA1_ostream.hpp +'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' +baseName: MSIHandler.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' +'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +baseName: TabReader.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' +baseName: gaussfilter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' +baseName: preparedata.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' +baseName: gauss.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' +baseName: filter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' +baseName: interpolate.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' +baseName: interpolation.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' +baseName: scale.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +baseName: constants.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' +baseName: diff.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' +baseName: copyif.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample/utilities +'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' +baseName: bin1d.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' +baseName: masscomparefunctors.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' +baseName: breakspec.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/Version.hpp' -baseName: MemoryIndex.hpp -dirName: pwiz/data/common -'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' -baseName: BinaryIndexStream.hpp -dirName: pwiz/data/common -'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' +baseName: SpectrumList_Demux.hpp +dirName: pwiz/analysis/spectrum_processing +'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' +baseName: DemuxDataProcessingStrings.hpp +dirName: pwiz/analysis/demux +'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/cv.hpp' -baseName: diff_std.hpp +baseName: MemoryIndex.hpp dirName: pwiz/data/common -'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' -baseName: obo.hpp +'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' +baseName: ParamTypes.hpp dirName: pwiz/data/common -'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/obo.hpp' +'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' +baseName: Unimod.hpp +dirName: pwiz/data/common +'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/Index.hpp' -baseName: ParamTypes.hpp -dirName: pwiz/data/common -'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' -baseName: Unimod.hpp +baseName: diff_std.hpp dirName: pwiz/data/common -'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' -baseName: MSDataMerger.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' -baseName: SpectrumList_mz5.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' -baseName: Version.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' -baseName: SpectrumList_MGF.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' -baseName: SpectrumListBase.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' -baseName: SpectrumList_mzXML.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' -baseName: RAMPAdapter.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' -baseName: MSNumpress.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' +'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' +baseName: BinaryIndexStream.hpp +dirName: pwiz/data/common +'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' +baseName: obo.hpp +dirName: pwiz/data/common +'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' -baseName: SpectrumListCache.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' -baseName: MSDataFile.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' +baseName: Diff.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +baseName: examples.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' -baseName: Index_mzML.hpp +baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' -baseName: TextWriter.hpp +'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' +baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' -baseName: MSData.hpp +'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' +baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' -baseName: ChromatogramList_mzML.hpp +'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +baseName: SpectrumList_mzXML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' +baseName: Version.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' -baseName: examples.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' -baseName: Serializer_MSn.hpp +baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' -baseName: DefaultReaderList.hpp +'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' +baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' -baseName: IO.hpp +'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' -baseName: MemoryMRUCache.hpp +'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' +baseName: TextWriter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' -baseName: SpectrumListWrapper.hpp +'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +baseName: RAMPAdapter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' +baseName: Index_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +baseName: SpectrumListBase.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' +baseName: MSData.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' +baseName: DefaultReaderList.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' -baseName: SpectrumList_BTDX.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' -baseName: LegacyAdapter.hpp +baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' -baseName: Serializer_mzXML.hpp +'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' +baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' -baseName: ChromatogramList_mz5.hpp +'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' +baseName: IO.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' -baseName: Diff.hpp +'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +baseName: MSDataFile.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' -baseName: ChromatogramListBase.hpp +baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' -baseName: SpectrumIterator.hpp +'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' +baseName: MSDataMerger.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' +'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' +baseName: ChromatogramList_mz5.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' -baseName: Serializer_mz5.hpp +baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' -baseName: SpectrumList_mzML.hpp +'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' +baseName: MSNumpress.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' -baseName: FrequencyDataTestData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' +'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' +baseName: LegacyAdapter.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' +baseName: SpectrumList_MGF.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' -baseName: PeakData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/PeakData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' +baseName: SampleDatum.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' +baseName: FrequencyDataTestData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' -baseName: SampleDatum.hpp +baseName: PeakData.hpp dirName: pwiz/data/misc -'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' -baseName: DemuxDataProcessingStrings.hpp -dirName: pwiz/analysis/demux -'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -baseName: SpectrumList_Demux.hpp -dirName: pwiz/analysis/spectrum_processing -'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' +'pwiz/data/misc/PeakData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' make[1]: Leaving directory '/build/libpwizlite-3.0.4' dh_auto_build -O--build-system=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/libpwizlite-3.0.4 -B/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/CMakeFiles /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1251,17 +1290,19 @@ make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.4 /build/libpwizlite-3.0.4/src /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build -make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build +make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build +make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' [ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp -[ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp +[ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp [ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp +[ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -1298,91 +1339,36 @@ 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:29: + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 6%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp -[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds] - 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here - 501 | bool inCDATA; - | ^~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:29: + from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator @@ -1574,18 +1560,61 @@ /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp -[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 7%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp +[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 11%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); @@ -1597,13 +1626,7 @@ 501 | bool inCDATA; | ^~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -1616,6 +1639,14 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter 'filepath' [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) @@ -1627,12 +1658,6 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter 'path' [-Wunused-parameter] 719 | PWIZ_API_DECL void check_path_length(const string& path) | ~~~~~~~~~~~~~~^~~~ -[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp -[ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp -[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -1643,268 +1668,32 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 16%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp -[ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 18%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ +[ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp +[ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp +[ 16%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds] + 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here + 501 | bool inCDATA; + | ^~~~~~~ +[ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp:21: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 523 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, - inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19: -/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1032 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, - inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19, - inlined from 'void pwiz::util::BinaryData::resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:354:16: -/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1032 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 523 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, - inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19: -/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1032 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, - inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19, - inlined from 'void pwiz::util::BinaryData::resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:354:16: -/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1032 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 21%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 22%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -[ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp +[ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { @@ -1929,25 +1718,16 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp:21: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 20%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1963,26 +1743,14 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -1998,6 +1766,27 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 524 | bool useWorkerThreads) const + | ~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -2022,30 +1811,43 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp +[ 22%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp +[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 25%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:29: + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 27%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp -[ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]', - inlined from 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:101:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:26: @@ -2064,6 +1866,20 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] @@ -2123,12 +1939,34 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]', + inlined from 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:101:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] 81 | stream_offset position) @@ -2200,6 +2038,8 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter 'position' [-Wunused-parameter] 2787 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +[ 27%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2235,12 +2075,144 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2259,61 +2231,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter 'filepath' [-Wunused-parameter] - 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter 'path' [-Wunused-parameter] - 719 | PWIZ_API_DECL void check_path_length(const string& path) - | ~~~~~~~~~~~~~~^~~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:349:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 31%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp -[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2515:45: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2411:41: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, @@ -2333,8 +2250,6 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -2376,16 +2291,53 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 523 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, + inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19: +/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1032 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, + inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19, + inlined from 'void pwiz::util::BinaryData::resize(size_type, const T&) [with T = double]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:354:16: +/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1032 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 36%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 523 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, + inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19: +/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1032 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void pwiz::util::BinaryData::Impl::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:126:30, + inlined from 'void pwiz::util::BinaryData::_resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:361:19, + inlined from 'void pwiz::util::BinaryData::resize(size_type, const T&) [with T = long long int]' at /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:354:16: +/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1032 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp +[ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, @@ -2405,22 +2357,32 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:349:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp:33: + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 37%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp +[ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2475,8 +2437,42 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp +[ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp +[ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2515:45: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2411:41: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -2506,11 +2502,6 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp:21: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -2531,10 +2522,10 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp -[ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp +[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp +[ 36%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:25: @@ -2553,14 +2544,15 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -2576,44 +2568,20 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:27: + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 45%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, @@ -2633,8 +2601,19 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter 'filepath' [-Wunused-parameter] + 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter 'path' [-Wunused-parameter] + 719 | PWIZ_API_DECL void check_path_length(const string& path) + | ~~~~~~~~~~~~~~^~~~ +[ 40%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -2682,30 +2661,6 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 114 | } else if (init == mask) { - | ~~~~~^~~~~~~ -In file included from /usr/include/c++/12/iostream:39, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:27: -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:404:26: -/usr/include/c++/12/ostream:202:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] - 202 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here - 347 | long long y; - | ^ -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:403:33: -/usr/include/c++/12/ostream:202:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] - 202 | { return _M_insert(__n); } - | ~~~~~~~~~^~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here - 346 | long long extrapol; - | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); @@ -2780,28 +2735,8 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +[ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] @@ -2819,27 +2754,14 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) @@ -2852,6 +2774,24 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1204:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1204 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const @@ -2867,30 +2807,24 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:123:31: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:119:33: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:133:37: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:31: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp In file included from /usr/include/c++/12/vector:70, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentityFromMzXML&}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': @@ -2903,6 +2837,8 @@ /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromMzXML}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: @@ -2913,209 +2849,8 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]', - inlined from 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:101:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:31: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] - 81 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] - 132 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] - 191 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] - 263 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 500 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] - 501 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 693 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] - 694 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] - 966 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] - 1079 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1355 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] - 1356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) - | ^~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 1660 | bool zlib = false; // Handle numpress+zlib - | ^~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter 'position' [-Wunused-parameter] - 2438 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter 'position' [-Wunused-parameter] - 2539 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter 'position' [-Wunused-parameter] - 2787 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ +[ 46%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -3149,8 +2884,6 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3167,6 +2900,18 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp:33: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp +[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp +[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, @@ -3186,8 +2931,26 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp +[ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3195,8 +2958,8 @@ 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.hpp:28, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3212,6 +2975,11 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp:21: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] @@ -3265,70 +3033,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter 'position' [-Wunused-parameter] 206 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2515:45: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2411:41: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexText()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:660:25: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexBinary()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:707:23: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:24: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:353:40: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3399,8 +3103,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /usr/include/c++/12/vector:70, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromXML}; _Tp = pwiz::msdata::SpectrumIdentityFromXML; _Alloc = std::allocator]': @@ -3415,6 +3117,8 @@ /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:232:45: @@ -3427,27 +3131,45 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp +[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexText()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:660:25: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexBinary()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:707:23: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/12/string:45, - from /usr/include/c++/12/stdexcept:39, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28: +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -3457,16 +3179,23 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:353:40: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +In file included from /usr/include/c++/12/string:45, + from /usr/include/c++/12/stdexcept:39, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -3476,9 +3205,15 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:25: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3494,87 +3229,21 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:26: +[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp -In file included from /usr/include/c++/12/vector:64, - from /usr/include/c++/12/functional:62, - from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, - from /usr/include/boost/numeric/conversion/converter.hpp:14, - from /usr/include/boost/numeric/conversion/cast.hpp:33, - from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, - from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, - from /usr/include/boost/lexical_cast.hpp:32, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', - inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: -/usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] - 1124 | return *(this->_M_impl._M_start + __n); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here - 240 | boost::optional lruToReset; - | ^~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, @@ -3600,28 +3269,12 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:349:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3688,6 +3341,26 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:64, + from /usr/include/c++/12/functional:62, + from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, + from /usr/include/boost/numeric/conversion/converter.hpp:14, + from /usr/include/boost/numeric/conversion/cast.hpp:33, + from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, + from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, + from /usr/include/boost/lexical_cast.hpp:32, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', + inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: +/usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] + 1124 | return *(this->_M_impl._M_start + __n); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here + 240 | boost::optional lruToReset; + | ^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } @@ -3793,10 +3466,39 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o +[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 114 | } else if (init == mask) { + | ~~~~~^~~~~~~ +In file included from /usr/include/c++/12/iostream:39, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:27: +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:404:26: +/usr/include/c++/12/ostream:202:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] + 202 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here + 347 | long long y; + | ^ +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:403:33: +/usr/include/c++/12/ostream:202:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] + 202 | { return _M_insert(__n); } + | ~~~~~~~~~^~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here + 346 | long long extrapol; + | ^~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3812,13 +3514,36 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3853,30 +3578,196 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MGFImpl::createIndex()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp:419:33: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 66%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] + 421 | const SpectrumListPtr spectrumListPtr, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter 'position' [-Wunused-parameter] + 976 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter 'position' [-Wunused-parameter] + 1105 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter 'position' [-Wunused-parameter] + 1186 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter 'position' [-Wunused-parameter] + 1234 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter 'position' [-Wunused-parameter] + 1302 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 524 | bool useWorkerThreads) const + | ~~~~~^~~~~~~~~~~~~~~~ +[ 63%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:123:31: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:119:33: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:133:37: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp +[ 66%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:34: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: +/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]', + inlined from 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:101:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp +[ 68%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp +[ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3892,17 +3783,143 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp -[ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] + 81 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] + 132 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] + 191 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] + 263 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 500 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] + 501 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 693 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] + 694 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] + 966 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] + 1079 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 1355 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] + 1356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) + | ^~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 1660 | bool zlib = false; // Handle numpress+zlib + | ^~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter 'position' [-Wunused-parameter] + 2438 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter 'position' [-Wunused-parameter] + 2539 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter 'position' [-Wunused-parameter] + 2787 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3937,9 +3954,16 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ @@ -3955,31 +3979,30 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 72%] Linking CXX static library libpwizlite.a +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1 +/usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" 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"CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" +/usr/bin/ranlib libpwizlite.a +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -4014,59 +4037,105 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp:28: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] - 421 | const SpectrumListPtr spectrumListPtr, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter 'position' [-Wunused-parameter] - 976 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter 'position' [-Wunused-parameter] - 1105 | stream_offset position) +make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' +[ 72%] Built target pwizlite-static +[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp +[ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter 'position' [-Wunused-parameter] - 1186 | stream_offset position) +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter 'position' [-Wunused-parameter] - 1234 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter 'position' [-Wunused-parameter] - 1302 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:34: + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 71%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: -/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -4085,6 +4154,12 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:349:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -4116,58 +4191,8 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp -[ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp -[ 77%] Linking CXX shared library libpwizlite.so -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.4 "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_thread.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_atomic.so.1.74.0 +[ 77%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:25: @@ -4186,16 +4211,31 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.4 libpwizlite.so.3 libpwizlite.so -make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf' -[ 77%] Built target pwizlite-shared -[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2515:45: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2411:41: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] @@ -4213,16 +4253,14 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp +[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, @@ -4242,6 +4280,8 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -4283,6 +4323,14 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] @@ -4300,12 +4348,6 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -4367,12 +4409,24 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); @@ -4386,6 +4440,12 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) @@ -4402,8 +4462,8 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ -[ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp +[ 83%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:578:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 578 | if (id.find("controllerType=0 controllerNumber=1") != 0) @@ -4415,54 +4475,12 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentityFromMzXML&}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:64: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]', - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:878:29: -/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1287 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromMzXML}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromMzXML}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:787:29: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': @@ -4512,10 +4530,30 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp -[ 86%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp +[ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentityFromMzXML&}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/12/vector:64: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]', + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:878:29: +/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1287 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromMzXML}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromMzXML}; _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentityFromMzXML; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:787:29: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, @@ -4535,8 +4573,14 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp +[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:26: @@ -4555,17 +4599,13 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 87%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -4601,6 +4641,21 @@ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:33: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 205 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter 'position' [-Wunused-parameter] + 206 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 88%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:24: @@ -4620,24 +4675,13 @@ 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:33: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 205 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter 'position' [-Wunused-parameter] - 206 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -4702,62 +4746,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -In file included from /usr/include/c++/12/vector:70, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromXML}; _Tp = pwiz::msdata::SpectrumIdentityFromXML; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromXML}; _Tp = pwiz::msdata::SpectrumIdentityFromXML; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:232:45: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, - inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:318:41: -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 90%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/string:45, - from /usr/include/c++/12/stdexcept:39, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': @@ -4784,6 +4772,12 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexText()' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:660:25: @@ -4796,22 +4790,70 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/string:45, + from /usr/include/c++/12/stdexcept:39, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/vector:70, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromXML}; _Tp = pwiz::msdata::SpectrumIdentityFromXML; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:353:40: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentityFromXML}; _Tp = pwiz::msdata::SpectrumIdentityFromXML; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:232:45: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp -[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {pwiz::msdata::ChromatogramIdentity}; _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = pwiz::msdata::ChromatogramIdentity; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, + inlined from 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:318:41: +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp +[ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp +[ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, @@ -4831,18 +4873,76 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 54 | class PWIZ_API_DECL const_iterator : public std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/12/bits/stl_algobase.h:65, + from /usr/include/c++/12/algorithm:60, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 88 | class PWIZ_API_DECL iterator : public std::iterator + | ^~~~~~~~ +/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -4909,6 +5009,12 @@ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } @@ -4916,26 +5022,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /usr/include/c++/12/vector:64, - from /usr/include/c++/12/functional:62, - from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, - from /usr/include/boost/numeric/conversion/converter.hpp:14, - from /usr/include/boost/numeric/conversion/cast.hpp:33, - from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, - from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, - from /usr/include/boost/lexical_cast.hpp:32, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', - inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: -/usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] - 1124 | return *(this->_M_impl._M_start + __n); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': -/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here - 240 | boost::optional lruToReset; - | ^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter 'filename' [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const @@ -5034,72 +5120,6 @@ /usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 741 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 54 | class PWIZ_API_DECL const_iterator : public std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/12/bits/stl_algobase.h:65, - from /usr/include/c++/12/algorithm:60, - from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 88 | class PWIZ_API_DECL iterator : public std::iterator - | ^~~~~~~~ -/usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, @@ -5124,8 +5144,36 @@ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter 'position' [-Wunused-parameter] 1302 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp +In file included from /usr/include/c++/12/vector:64, + from /usr/include/c++/12/functional:62, + from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, + from /usr/include/boost/numeric/conversion/converter.hpp:14, + from /usr/include/boost/numeric/conversion/cast.hpp:33, + from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, + from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, + from /usr/include/boost/lexical_cast.hpp:32, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, + from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', + inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: +/usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] + 1124 | return *(this->_M_impl._M_start + __n); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': +/build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here + 240 | boost::optional lruToReset; + | ^~~~~~~~~~ +[ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp:28: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp In file included from /usr/include/c++/12/vector:70, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': @@ -5138,28 +5186,27 @@ /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp:28: + from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:34: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp -[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp +[ 98%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp +In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: +/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:34: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || @@ -5180,13 +5227,6 @@ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ -In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: -/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o