Diff of the two buildlogs:
--
--- b1/build.log 2023-05-06 09:30:08.235234276 +0000
+++ b2/build.log 2023-05-06 09:34:21.020150062 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Fri May 5 21:16:37 -12 2023
-I: pbuilder-time-stamp: 1683364597
+I: Current time: Sat May 6 23:30:26 +14 2023
+I: pbuilder-time-stamp: 1683365426
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./parasail_2.6+dfsg.orig.tar.xz]
I: copying [./parasail_2.6+dfsg-1.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Fri Sep 9 22:13:45 2022 -12
+gpgv: Signature made Sun Sep 11 00:13:45 2022 +14
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
@@ -29,135 +29,167 @@
dpkg-source: info: applying nonx86
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D01_modify_environment starting
+debug: Running on jtx1c.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 6 23:30 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='armhf'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
- DISTRIBUTION='bookworm'
- HOME='/root'
- HOST_ARCH='armhf'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+ BASH_VERSION='5.2.15(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=armhf
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
+ DIRSTACK=()
+ DISTRIBUTION=bookworm
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=arm
+ HOST_ARCH=armhf
IFS='
'
- INVOCATION_ID='efbe785456a14a2b8c1f0d8df9b68c30'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='23959'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=5df139956ed84eeba1444c593735a8a6
+ LANG=C
+ LANGUAGE=it_CH:it
+ LC_ALL=C
+ MACHTYPE=arm-unknown-linux-gnueabihf
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnueabihf
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=9467
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/pbuilderrc_0sWy --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b1 --logfile b1/build.log parasail_2.6+dfsg-1.dsc'
- SUDO_GID='113'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://10.0.0.15:3142/'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/pbuilderrc_IcyG --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WnsMKkKq/b2 --logfile b2/build.log --extrapackages usrmerge parasail_2.6+dfsg-1.dsc'
+ SUDO_GID=114
+ SUDO_UID=108
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://10.0.0.15:3142/
I: uname -a
- Linux cbxi4pro0 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux
+ Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux
I: ls -l /bin
- total 5096
- -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2
- -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
- -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat
- -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod
- -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp
- -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash
- -rwxr-xr-x 1 root root 133220 Sep 20 2022 date
- -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd
- -rwxr-xr-x 1 root root 68104 Sep 20 2022 df
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir
- -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
- -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 false
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
- -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt
- -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount
- -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
- -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
- -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip
- -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname
- -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln
- -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls
- -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk
- -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir
- -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod
- -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp
- -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more
- -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount
- -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd
- lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink
- -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir
- -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts
- -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed
- lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty
- -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync
- -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar
- -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile
- -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 true
- -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server
- -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount
- -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir
- -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
- -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
- -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
- -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
- -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
- -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
- -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
- -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
-I: user script /srv/workspace/pbuilder/23959/tmp/hooks/D02_print_environment finished
+ total 5072
+ -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2
+ -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
+ -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat
+ -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod
+ -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp
+ -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash
+ -rwxr-xr-x 1 root root 133220 Sep 21 2022 date
+ -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd
+ -rwxr-xr-x 1 root root 68104 Sep 21 2022 df
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir
+ -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
+ -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 false
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
+ -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt
+ -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount
+ -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
+ -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
+ -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip
+ -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname
+ -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln
+ -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls
+ -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
+ -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir
+ -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod
+ -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp
+ -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more
+ -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount
+ -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd
+ lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink
+ -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir
+ -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts
+ -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed
+ lrwxrwxrwx 1 root root 9 May 6 23:30 sh -> /bin/bash
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty
+ -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync
+ -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar
+ -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile
+ -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 true
+ -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server
+ -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount
+ -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir
+ -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
+ -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
+ -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
+ -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
+ -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
+ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
+ -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
+ -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -248,7 +280,7 @@
Get: 47 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB]
Get: 48 http://deb.debian.org/debian bookworm/main armhf libhts-dev armhf 1.16+ds-3 [1517 kB]
Get: 49 http://deb.debian.org/debian bookworm/main armhf libsimde-dev all 0.7.4~rc2-2 [377 kB]
-Fetched 23.3 MB in 2s (10.2 MB/s)
+Fetched 23.3 MB in 2s (11.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19329 files and directories currently installed.)
@@ -458,8 +490,19 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/parasail-2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.6+dfsg-1_source.changes
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+removed '/etc/unsupported-skip-usrmerge-conversion'
+The system has been successfully converted.
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/parasail-2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../parasail_2.6+dfsg-1_source.changes
dpkg-buildpackage: info: source package parasail
dpkg-buildpackage: info: source version 2.6+dfsg-1
dpkg-buildpackage: info: source distribution unstable
@@ -506,7 +549,7 @@
checking whether make supports nested variables... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
-checking for a race-free mkdir -p... /bin/mkdir -p
+checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
@@ -529,7 +572,7 @@
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for C compiler vendor... gnu
-checking for a sed that does not truncate output... /bin/sed
+checking for a sed that does not truncate output... /usr/bin/sed
checking for C compiler version... 12.2.0
checking for stdio.h... yes
checking for stdlib.h... yes
@@ -608,7 +651,7 @@
checking for library containing sqrt... -lm
checking for zlib.h... yes
checking for library containing gzopen... -lz
-checking for grep that handles long lines and -e... /bin/grep
+checking for grep that handles long lines and -e... /usr/bin/grep
checking whether C compiler supports visibility flag... -fvisibility=hidden
configure:
configure: C++ compiler
@@ -626,9 +669,9 @@
configure: Libtool setup
configure:
checking how to print strings... printf
-checking for a sed that does not truncate output... (cached) /bin/sed
-checking for egrep... /bin/grep -E
-checking for fgrep... /bin/grep -F
+checking for a sed that does not truncate output... (cached) /usr/bin/sed
+checking for egrep... /usr/bin/grep -E
+checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
@@ -649,8 +692,8 @@
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
-checking for a working dd... /bin/dd
-checking how to truncate binary pipes... /bin/dd bs=4096 count=1
+checking for a working dd... /usr/bin/dd
+checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
@@ -775,33 +818,41 @@
make[1]: Leaving directory '/build/parasail-2.6+dfsg'
dh_auto_build
- make -j3
+ make -j4
make[1]: Entering directory '/build/parasail-2.6+dfsg'
make all-am
make[2]: Entering directory '/build/parasail-2.6+dfsg'
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c
g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cpuid.c -fPIC -DPIC -o src/.libs/libparasail_la-cpuid.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/function_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-function_lookup.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/io.c -fPIC -DPIC -o src/.libs/libparasail_la-io.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/isastubs.c -fPIC -DPIC -o src/.libs/libparasail_la-isastubs.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/matrix_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-matrix_lookup.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/memory.c -fPIC -DPIC -o src/.libs/libparasail_la-memory.o
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c
In file included from /usr/include/c++/12/vector:70,
from apps/parasail_aligner.cpp:52:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'std::vector<long long int> calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector<long int>&, const std::vector<long int>&, std::size_t&) [with info = parasail_function_info]' at apps/parasail_aligner.cpp:425:22:
@@ -844,6 +895,7 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'std::vector<long long int> calc_batches(long long int, bool, std::size_t, const info*, const PairVec&, const std::vector<long int>&, const std::vector<long int>&, std::size_t&) [with info = parasail_pfunction_info]' at apps/parasail_aligner.cpp:425:22:
@@ -886,167 +938,158 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sw_dispatch.lo `test -f 'src/sw_dispatch.c' || echo './'`src/sw_dispatch.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_dispatch.lo `test -f 'src/sg_qb_dispatch.c' || echo './'`src/sg_qb_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sw_dispatch.lo `test -f 'src/sw_dispatch.c' || echo './'`src/sw_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sw_dispatch.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_dispatch.lo `test -f 'src/sg_qb_dispatch.c' || echo './'`src/sg_qb_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_dispatch.o
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+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_dispatch.lo `test -f 'src/sg_qe_dispatch.c' || echo './'`src/sg_qe_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qx_dispatch.lo `test -f 'src/sg_qx_dispatch.c' || echo './'`src/sg_qx_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qx_dispatch.lo `test -f 'src/sg_qx_dispatch.c' || echo './'`src/sg_qx_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qx_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qx_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_db_dispatch.lo `test -f 'src/sg_db_dispatch.c' || echo './'`src/sg_db_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_db_dispatch.lo `test -f 'src/sg_db_dispatch.c' || echo './'`src/sg_db_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_db_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_de_dispatch.lo `test -f 'src/sg_de_dispatch.c' || echo './'`src/sg_de_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_de_dispatch.lo `test -f 'src/sg_de_dispatch.c' || echo './'`src/sg_de_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_de_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dx_dispatch.lo `test -f 'src/sg_dx_dispatch.c' || echo './'`src/sg_dx_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dx_dispatch.lo `test -f 'src/sg_dx_dispatch.c' || echo './'`src/sg_dx_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dx_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dx_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_de_dispatch.lo `test -f 'src/sg_qb_de_dispatch.c' || echo './'`src/sg_qb_de_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_de_dispatch.lo `test -f 'src/sg_qb_de_dispatch.c' || echo './'`src/sg_qb_de_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_de_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_db_dispatch.lo `test -f 'src/sg_qe_db_dispatch.c' || echo './'`src/sg_qe_db_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_db_dispatch.lo `test -f 'src/sg_qe_db_dispatch.c' || echo './'`src/sg_qe_db_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_db_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_db_dispatch.lo `test -f 'src/sg_qb_db_dispatch.c' || echo './'`src/sg_qb_db_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_db_dispatch.lo `test -f 'src/sg_qb_db_dispatch.c' || echo './'`src/sg_qb_db_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_db_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_de_dispatch.lo `test -f 'src/sg_qe_de_dispatch.c' || echo './'`src/sg_qe_de_dispatch.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_de_dispatch.lo `test -f 'src/sg_qe_de_dispatch.c' || echo './'`src/sg_qe_de_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_de_dispatch.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-dispatch_profile.lo `test -f 'src/dispatch_profile.c' || echo './'`src/dispatch_profile.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-dispatch_profile.lo `test -f 'src/dispatch_profile.c' || echo './'`src/dispatch_profile.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/dispatch_profile.c -fPIC -DPIC -o src/.libs/libparasail_la-dispatch_profile.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-satcheck.lo `test -f 'src/satcheck.c' || echo './'`src/satcheck.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-satcheck.lo `test -f 'src/satcheck.c' || echo './'`src/satcheck.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-striped_unwind.lo `test -f 'src/striped_unwind.c' || echo './'`src/striped_unwind.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/satcheck.c -fPIC -DPIC -o src/.libs/libparasail_la-satcheck.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-striped_unwind.lo `test -f 'src/striped_unwind.c' || echo './'`src/striped_unwind.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/striped_unwind.c -fPIC -DPIC -o src/.libs/libparasail_la-striped_unwind.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-traceback.lo `test -f 'src/traceback.c' || echo './'`src/traceback.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-traceback.lo `test -f 'src/traceback.c' || echo './'`src/traceback.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/traceback.c -fPIC -DPIC -o src/.libs/libparasail_la-traceback.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_banded.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_stats_scan.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_stats_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace.lo `test -f 'src/nw_trace.c' || echo './'`src/nw_trace.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace.lo `test -f 'src/nw_trace.c' || echo './'`src/nw_trace.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace.lo `test -f 'src/sg_trace.c' || echo './'`src/sg_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace.lo `test -f 'src/sg_trace.c' || echo './'`src/sg_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace.lo `test -f 'src/sw_trace.c' || echo './'`src/sw_trace.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace.lo `test -f 'src/sw_trace.c' || echo './'`src/sw_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace_scan.lo `test -f 'src/nw_trace_scan.c' || echo './'`src/nw_trace_scan.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace_scan.lo `test -f 'src/sg_trace_scan.c' || echo './'`src/sg_trace_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace_scan.lo `test -f 'src/nw_trace_scan.c' || echo './'`src/nw_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace_scan.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace_scan.lo `test -f 'src/sg_trace_scan.c' || echo './'`src/sg_trace_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace_scan.lo `test -f 'src/sw_trace_scan.c' || echo './'`src/sw_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace_scan.lo `test -f 'src/sw_trace_scan.c' || echo './'`src/sw_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_scan.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
-libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_banded.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
+libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_banded.o
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_banded.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o
-/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c
+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c contrib/sais-lite-lcp/sais.c -fPIC -DPIC -o contrib/sais-lite-lcp/.libs/sais.o
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo
libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o
libtool: link: ranlib .libs/libparasail_novec.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" )
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo
libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o
libtool: link: ranlib .libs/libparasail_novec_table.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" )
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo
libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o
libtool: link: ranlib .libs/libparasail_novec_rowcol.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" )
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 9:0:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/arm-linux-gnueabihf src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo
-libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.0
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo
libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o
libtool: link: ranlib tests/.libs/libsais.a
libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" )
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 9:0:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/arm-linux-gnueabihf src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz
+libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.0
libtool: link: (cd ".libs" && rm -f "libparasail.so.8" && ln -s "libparasail.so.8.1.0" "libparasail.so.8")
libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.0" "libparasail.so")
libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" )
-/bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la
+/bin/sh ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz
libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp
make[2]: Leaving directory '/build/parasail-2.6+dfsg'
make[1]: Leaving directory '/build/parasail-2.6+dfsg'
dh_auto_test
- make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1
+ make -j4 test "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[1]: Entering directory '/build/parasail-2.6+dfsg'
make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la
make[2]: Entering directory '/build/parasail-2.6+dfsg'
@@ -1074,6 +1117,7 @@
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c
+gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c
tests/test_verify.c: In function 'main':
tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
310 | int do_neon = 1;
@@ -1106,7 +1150,6 @@
tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
324 | int do_sse2 = 1;
| ^~~~~~~
-gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c
tests/test_verify_traces.c: In function 'check_functions':
@@ -1137,6 +1180,9 @@
tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
235 | int do_sse2 = 1;
| ^~~~~~~
+gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c
+gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c
+gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c
tests/test_verify_cigars.c: In function 'main':
tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
311 | int do_neon = 1;
@@ -1153,14 +1199,8 @@
tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
307 | int do_sse2 = 1;
| ^~~~~~~
-gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c
-gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c
-gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la
-libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz
-libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la
In file included from tests/test_p59.c:33:
tests/test_p59.h: In function 'main':
tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings]
@@ -1181,45 +1221,48 @@
| | |
| long int int64_t {aka long long int}
| %lld
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la
+libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la
+libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la
libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la
-libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la
libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp
+libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp
+/bin/sh ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la
libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp
-/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la
libtool: link: gcc -fopenmp -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la
-/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la
+/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -ffile-prefix-map=/build/parasail-2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz
make[2]: Leaving directory '/build/parasail-2.6+dfsg'
make check-TESTS
make[2]: Entering directory '/build/parasail-2.6+dfsg'
make[3]: Entering directory '/build/parasail-2.6+dfsg'
-PASS: tests/test_basic
PASS: tests/test_isa
+PASS: tests/test_basic
============================================================================
Testsuite summary for Pairwise Sequence Alignment Library 2.6.0
============================================================================
@@ -1240,29 +1283,29 @@
make -j1 install DESTDIR=/build/parasail-2.6\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/parasail-2.6+dfsg'
make[2]: Entering directory '/build/parasail-2.6+dfsg'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
- /bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
+ /bin/sh ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.0 /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.so.8.1.0
libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.0 libparasail.so.8; }; })
libtool: install: (cd /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libparasail.so.8.1.0 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.0 libparasail.so; }; })
libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libparasail.la
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/bin'
- /bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.6+dfsg/debian/tmp/usr/bin'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/bin'
+ /bin/sh ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.6+dfsg/debian/tmp/usr/bin'
libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_aligner
libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/parasail-2.6+dfsg/debian/tmp/usr/bin/parasail_stats
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include'
/usr/bin/install -c -m 644 parasail.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
/usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail'
/usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
/usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/parasail-2.6+dfsg/debian/tmp/usr/include/parasail/matrices'
- /bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
+ /usr/bin/mkdir -p '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 parasail-1.pc '/build/parasail-2.6+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/build/parasail-2.6+dfsg'
make[1]: Leaving directory '/build/parasail-2.6+dfsg'
@@ -1321,8 +1364,8 @@
dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6+dfsg-1_armhf.deb'.
+dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'parasail' in '../parasail_2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6+dfsg-1_armhf.deb'.
@@ -1333,12 +1376,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/9467/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/23959 and its subdirectories
-I: Current time: Fri May 5 21:30:03 -12 2023
-I: pbuilder-time-stamp: 1683365403
+I: removing directory /srv/workspace/pbuilder/9467 and its subdirectories
+I: Current time: Sat May 6 23:34:17 +14 2023
+I: pbuilder-time-stamp: 1683365657