Diff of the two buildlogs:
--
--- b1/build.log 2023-05-09 14:30:08.720354982 +0000
+++ b2/build.log 2023-05-09 14:33:21.679918644 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Tue May 9 02:27:36 -12 2023
-I: pbuilder-time-stamp: 1683642456
+I: Current time: Wed May 10 04:30:35 +14 2023
+I: pbuilder-time-stamp: 1683642635
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
@@ -16,7 +16,7 @@
I: copying [./proftmb_1.1.12.orig.tar.gz]
I: copying [./proftmb_1.1.12-11.debian.tar.xz]
I: Extracting source
-gpgv: Signature made Tue Jan 18 08:09:11 2022 -12
+gpgv: Signature made Wed Jan 19 10:09:11 2022 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
@@ -31,135 +31,167 @@
dpkg-source: info: applying no_pp-popcon.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/10979/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/D01_modify_environment starting
+debug: Running on virt32c.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 10 04:31 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='armhf'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
- DISTRIBUTION='bookworm'
- HOME='/root'
- HOST_ARCH='armhf'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+ BASH_VERSION='5.2.15(1)-release'
+ BUILDDIR=/build
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=armhf
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
+ DIRSTACK=()
+ DISTRIBUTION=bookworm
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=arm
+ HOST_ARCH=armhf
IFS='
'
- INVOCATION_ID='b7a486d038d04eadb3ac09acb32facad'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='10979'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=b2989a8683c2463b9dd705cdc874182a
+ LANG=C
+ LANGUAGE=it_CH:it
+ LC_ALL=C
+ MACHTYPE=arm-unknown-linux-gnueabihf
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnueabihf
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=26512
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PANmiPLL/pbuilderrc_Uurn --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PANmiPLL/b1 --logfile b1/build.log proftmb_1.1.12-11.dsc'
- SUDO_GID='114'
- SUDO_UID='108'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://10.0.0.15:3142/'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PANmiPLL/pbuilderrc_3hXz --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PANmiPLL/b2 --logfile b2/build.log --extrapackages usrmerge proftmb_1.1.12-11.dsc'
+ SUDO_GID=113
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://10.0.0.15:3142/
I: uname -a
- Linux jtx1c 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux
I: ls -l /bin
total 5072
- -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
- -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
- -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
- -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
- -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2
- -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover
- lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
- -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
- -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat
- -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod
- -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp
- -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash
- -rwxr-xr-x 1 root root 133220 Sep 20 2022 date
- -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd
- -rwxr-xr-x 1 root root 68104 Sep 20 2022 df
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir
- -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
- -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 false
- -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
- -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt
- -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount
- -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
- -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
- -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip
- -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname
- -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln
- -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls
- -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk
- -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir
- -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod
- -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp
- -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more
- -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount
- -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint
- -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
- lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
- -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd
- lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink
- -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm
- -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir
- -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts
- -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed
- lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep
- -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty
- -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su
- -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync
- -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar
- -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile
- -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch
- -rwxr-xr-x 1 root root 67548 Sep 20 2022 true
- -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server
- -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount
- -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname
- -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
- -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir
- -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl
- lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
- -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
- -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
- -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
- -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
- -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
- -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
- -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
- -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
- -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
-I: user script /srv/workspace/pbuilder/10979/tmp/hooks/D02_print_environment finished
+ -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
+ -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
+ -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
+ -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
+ -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2
+ -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover
+ lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
+ -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
+ -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat
+ -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod
+ -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp
+ -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash
+ -rwxr-xr-x 1 root root 133220 Sep 21 2022 date
+ -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd
+ -rwxr-xr-x 1 root root 68104 Sep 21 2022 df
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir
+ -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
+ -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 false
+ -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
+ -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt
+ -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount
+ -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
+ -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
+ -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip
+ -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname
+ -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln
+ -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls
+ -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
+ -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir
+ -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod
+ -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp
+ -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more
+ -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount
+ -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint
+ -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
+ lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
+ -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd
+ lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink
+ -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm
+ -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir
+ -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts
+ -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed
+ lrwxrwxrwx 1 root root 9 May 10 04:31 sh -> /bin/bash
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep
+ -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty
+ -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su
+ -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync
+ -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar
+ -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile
+ -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch
+ -rwxr-xr-x 1 root root 67548 Sep 21 2022 true
+ -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server
+ -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount
+ -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname
+ -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
+ -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir
+ -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl
+ lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
+ -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
+ -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
+ -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
+ -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
+ -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
+ -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
+ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
+ -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
+ -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -239,7 +271,7 @@
Get: 34 http://deb.debian.org/debian bookworm/main armhf libgsl27 armhf 2.7.1+dfsg-3+b1 [773 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf libgsl-dev armhf 2.7.1+dfsg-3+b1 [975 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf opt armhf 3.19-3 [64.9 kB]
-Fetched 20.2 MB in 7s (2786 kB/s)
+Fetched 20.2 MB in 1s (28.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19329 files and directories currently installed.)
@@ -397,8 +429,19 @@
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../proftmb_1.1.12-11_source.changes
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+removed '/etc/unsupported-skip-usrmerge-conversion'
+The system has been successfully converted.
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../proftmb_1.1.12-11_source.changes
dpkg-buildpackage: info: source package proftmb
dpkg-buildpackage: info: source version 1.1.12-11
dpkg-buildpackage: info: source distribution unstable
@@ -420,7 +463,7 @@
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
-checking for a race-free mkdir -p... /bin/mkdir -p
+checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
@@ -470,7 +513,7 @@
config.status: creating config.h
config.status: executing depfiles commands
dh_auto_build
- make -j3
+ make -j4
make[1]: Entering directory '/build/proftmb-1.1.12'
make all-recursive
make[2]: Entering directory '/build/proftmb-1.1.12'
@@ -483,6 +526,7 @@
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o proftmb.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backward.o Backward.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaumWelch.o BaumWelch.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp
In file included from proftmb.cpp:18:
HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
21 | void DisplayArch(ostream&,Par&,uint,char* ="");
@@ -490,6 +534,10 @@
HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
24 | void PrintEmit(ostream&,Par&,uint,char* ="");
| ^
+Eval.cpp: In function 'std::pair<double, double> CalcAccCovFromZ(double&)':
+Eval.cpp:573:52: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 573 | pair<double, double> CalcAccCovFromZ(double& zscore){
+ | ^
In file included from /usr/include/c++/12/vector:70,
from structs.h:5,
from Par.h:4,
@@ -502,15 +550,8 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectA.o ExpectA.cpp
-Eval.cpp: In function 'std::pair<double, double> CalcAccCovFromZ(double&)':
-Eval.cpp:573:52: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 573 | pair<double, double> CalcAccCovFromZ(double& zscore){
- | ^
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp
In file included from /usr/include/c++/12/vector:70,
from structs.h:5,
from Eval.h:4,
@@ -519,6 +560,7 @@
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
@@ -544,6 +586,8 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void DecodeStats(std::vector<Par>&, std::vector<TrainSeq>&, std::vector<std::set<std::__cxx11::basic_string<char> > >&, measure&, unsigned int, bool)' at Eval.cpp:214:16:
@@ -580,18 +624,19 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-GradientDescent.cpp: In member function 'std::pair<double, double> Par::Update(std::vector<TrainSeq>&, std::set<std::__cxx11::basic_string<char> >&)':
-GradientDescent.cpp:329:77: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
- 329 | pair<double, double> Par::Update(vector<TrainSeq>& tsq, set<string>& exclude){
- | ^
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::map<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > ScoCov(std::vector<evaldat>&)' at Eval.cpp:488:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp
+GradientDescent.cpp: In member function 'std::pair<double, double> Par::Update(std::vector<TrainSeq>&, std::set<std::__cxx11::basic_string<char> >&)':
+GradientDescent.cpp:329:77: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
+ 329 | pair<double, double> Par::Update(vector<TrainSeq>& tsq, set<string>& exclude){
+ | ^
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp
In file included from HMMOutput.cpp:1:
HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
21 | void DisplayArch(ostream&,Par&,uint,char* ="");
@@ -603,10 +648,9 @@
HMMOutput.cpp:58:62: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
58 | pair<double, double> ac = CalcAccCovFromZ(S.scl.Score);
| ^
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp
In file included from /usr/include/c++/12/vector:70,
from structs.h:5,
from TrainSeq.h:4,
@@ -642,7 +686,6 @@
/usr/include/c++/12/bits/stl_pair.h:741:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
741 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp
In file included from Params.cpp:2:
Serialize.h: In function 'void StoreVector(std::ofstream&, std::vector<T>&, T, M1, M2) [with T = std::pair<double, double>; M1 = double; M2 = double]':
@@ -650,12 +693,15 @@
28 | void StoreVector(ofstream& of, vector<T>& D, T dummy1, M1 dummy2, M2 dummy3){
| ^~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp
In file included from /usr/include/c++/12/vector:70,
from structs.h:5:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ReadVector(std::ifstream&, std::vector<T>&, T) [with T = double]' at Serialize.h:97:15,
@@ -669,11 +715,34 @@
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:70,
+ from structs.h:5,
+ from Par.h:4,
+ from Params.cpp:1:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/12/vector:64:
+In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
+ inlined from 'void ReadVector(std::ifstream&, std::vector<T>&, T) [with T = double]' at Serialize.h:97:15:
+/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+ 1287 | _M_realloc_insert(end(), __x);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {archpair}; _Tp = archpair; _Alloc = std::allocator<archpair>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<archpair>::iterator' changed in GCC 7.1
+ 439 | vector<_Tp, _Alloc>::
+ | ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {archpair}; _Tp = archpair; _Alloc = std::allocator<archpair>]',
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = archpair; _Alloc = std::allocator<archpair>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+ inlined from 'void Read2DVector(std::ifstream&, std::vector<std::vector<T> >&, T, M1, M2) [with T = archpair; M1 = unsigned int; M2 = double]' at Serialize.h:177:21:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<archpair*, std::vector<archpair> >' changed in GCC 7.1
+ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'static void Par::ReadZCurve(char*)' at Par.cpp:757:19:
@@ -695,36 +764,13 @@
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:70,
- from structs.h:5,
- from Par.h:4,
- from Params.cpp:1:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/12/vector:64:
-In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
- inlined from 'void ReadVector(std::ifstream&, std::vector<T>&, T) [with T = double]' at Serialize.h:97:15:
-/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
- 1287 | _M_realloc_insert(end(), __x);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {archpair}; _Tp = archpair; _Alloc = std::allocator<archpair>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<archpair>::iterator' changed in GCC 7.1
- 439 | vector<_Tp, _Alloc>::
- | ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {archpair}; _Tp = archpair; _Alloc = std::allocator<archpair>]',
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = archpair; _Alloc = std::allocator<archpair>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
- inlined from 'void Read2DVector(std::ifstream&, std::vector<std::vector<T> >&, T, M1, M2) [with T = archpair; M1 = unsigned int; M2 = double]' at Serialize.h:177:21:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<archpair*, std::vector<archpair> >' changed in GCC 7.1
- 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void Read2DVector(std::ifstream&, std::vector<std::vector<T> >&, T) [with T = double]' at Serialize.h:205:21,
inlined from 'void Par::Read(char*)' at Params.cpp:51:14:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
@@ -735,12 +781,6 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp
-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp
In file included from /usr/include/c++/12/vector:70,
from structs.h:5,
from TrainSeq.h:4,
@@ -755,8 +795,10 @@
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<archpair*, std::vector<archpair> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp
+g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Zscore.o Zscore.cpp
-sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt
In file included from /usr/include/c++/12/bits/stl_algobase.h:64,
from /usr/include/c++/12/vector:60,
from Zscore.h:1,
@@ -798,6 +840,7 @@
Zscore.cpp:112:56: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
+sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt
In function 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = pair<double, double>]':
cc1plus: note: parameter passing for argument of type 'std::pair<double, std::pair<double, double> >' when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/c++/12/vector:70:
@@ -843,7 +886,7 @@
make[2]: Leaving directory '/build/proftmb-1.1.12'
make[1]: Leaving directory '/build/proftmb-1.1.12'
dh_auto_test
- make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1
+ make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[1]: Entering directory '/build/proftmb-1.1.12'
Making check in examples
make[2]: Entering directory '/build/proftmb-1.1.12/examples'
@@ -859,21 +902,21 @@
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/proftmb/
- make -j3 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no
+ make -j4 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/proftmb-1.1.12'
Making install in examples
make[2]: Entering directory '/build/proftmb-1.1.12/examples'
make[3]: Entering directory '/build/proftmb-1.1.12/examples'
make[3]: Nothing to be done for 'install-exec-am'.
- /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples'
+ /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples'
/usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples'
make[3]: Leaving directory '/build/proftmb-1.1.12/examples'
make[2]: Leaving directory '/build/proftmb-1.1.12/examples'
Making install in src
make[2]: Entering directory '/build/proftmb-1.1.12/src'
make[3]: Entering directory '/build/proftmb-1.1.12/src'
- /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin'
- /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1'
+ /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin'
+ /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1'
/usr/bin/install -c proftmb '/build/proftmb-1.1.12/debian/proftmb/usr/bin'
/usr/bin/install -c -m 644 proftmb.1 '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1'
make[3]: Leaving directory '/build/proftmb-1.1.12/src'
@@ -882,7 +925,7 @@
make[3]: Entering directory '/build/proftmb-1.1.12'
make[3]: Nothing to be done for 'install-exec-am'.
mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb"
- /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb'
+ /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb'
cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/"
/usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb'
rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn`
@@ -916,8 +959,8 @@
dh_gencontrol
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-11_armhf.deb'.
dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-11_armhf.deb'.
+dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-11_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../proftmb_1.1.12-11_armhf.buildinfo
dpkg-genchanges --build=binary -O../proftmb_1.1.12-11_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -925,12 +968,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/26512/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/10979 and its subdirectories
-I: Current time: Tue May 9 02:30:02 -12 2023
-I: pbuilder-time-stamp: 1683642602
+I: removing directory /srv/workspace/pbuilder/26512 and its subdirectories
+I: Current time: Wed May 10 04:33:17 +14 2023
+I: pbuilder-time-stamp: 1683642797