Diff of the two buildlogs: -- --- b1/build.log 2023-06-11 19:26:28.902375306 +0000 +++ b2/build.log 2023-06-11 19:44:23.443376946 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 11 06:18:03 -12 2023 -I: pbuilder-time-stamp: 1686507483 +I: Current time: Mon Jun 12 09:27:29 +14 2023 +I: pbuilder-time-stamp: 1686511649 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-cobra_0.26.2.orig.tar.gz] I: copying [./python-cobra_0.26.2-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Feb 5 09:32:48 2023 -12 +gpgv: Signature made Mon Feb 6 11:32:48 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -32,135 +32,167 @@ dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3242/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 09:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ba132c0730814989831ccfd8800c5364' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3242' - PS1='# ' - PS2='> ' + INVOCATION_ID=cb0f257764fe4955aede0d24153568b5 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=27445 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MD5vfgf0/pbuilderrc_x59s --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MD5vfgf0/b1 --logfile b1/build.log python-cobra_0.26.2-1.dsc' - SUDO_GID='116' - SUDO_UID='112' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MD5vfgf0/pbuilderrc_o7Va --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MD5vfgf0/b2 --logfile b2/build.log --extrapackages usrmerge python-cobra_0.26.2-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4b 5.10.0-23-armmp #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3242/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 12 09:27 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -462,7 +494,7 @@ Get: 204 http://deb.debian.org/debian bookworm/main armhf python3-sbml5 armhf 5.19.7+dfsg-2 [2990 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf python3-simplejson armhf 3.18.3-1 [57.1 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf python3-tabulate all 0.8.9-1 [35.2 kB] -Fetched 116 MB in 17s (6725 kB/s) +Fetched 116 MB in 3s (42.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) @@ -1318,8 +1350,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-cobra-0.26.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.26.2-1_source.changes +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/python-cobra-0.26.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.26.2-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.26.2-1 dpkg-buildpackage: info: source distribution unstable @@ -1329,7 +1372,7 @@ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/python-cobra-0.26.2' +make[1]: ingresso nella directory «/build/python-cobra-0.26.2» dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean @@ -1338,7 +1381,7 @@ 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache -make[1]: Leaving directory '/build/python-cobra-0.26.2' +make[1]: uscita dalla directory «/build/python-cobra-0.26.2» dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -1353,90 +1396,90 @@ running build running build_py creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra -copying src/cobra/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra +copying src/cobra/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra +creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/yaml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/dict.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/mat.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/json.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/sbml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io +creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/core.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/optgp.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/sampling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/delete.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/validate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/model.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/solution.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/singleton.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/model.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/singleton.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/solution.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/reaction.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/reaction.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core -creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/json.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/sbml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/dict.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/mat.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/yaml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/optgp.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/sampling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/core.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/boundary_types.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/array.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/context.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/util.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/context.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/array.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util -creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/delete.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/validate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/boundary_types.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium -creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/util/util.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/mini.json -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web +copying src/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web +copying src/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/data/mini.yml -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/mini.json -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests @@ -1444,7 +1487,7 @@ platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-0.26.2, configfile: tox.ini -plugins: anyio-3.6.2, mock-3.8.2, benchmark-3.2.2 +plugins: anyio-3.6.2, benchmark-3.2.2, mock-3.8.2 collected 549 items tests/test_core/test_configuration.py ...... [ 1%] @@ -1601,7 +1644,7 @@ /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) -.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 26 warnings +.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 50 warnings /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py:112: FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() @@ -1615,46 +1658,46 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min (22/31) Computing stats ... group 1/1: min (23/31) Computing stats ... group 1/1: min (24/31) Computing stats ... group 1/1: min (25/31) Computing stats ... group 1/1: min (26/31) Computing stats ... group 1/1: min (27/31) Computing stats ... group 1/1: min (28/31) Computing stats ... group 1/1: min (29/31) Computing stats ... group 1/1: min (30/31) Computing stats ... group 1/1: min (31/31) Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min (22/31) Computing stats ... group 1/1: min (23/31) Computing stats ... group 1/1: min (24/31) Computing stats ... group 1/1: min (25/31) Computing stats ... group 1/1: min (26/31) Computing stats ... group 1/1: min (27/31) Computing stats ... group 1/1: min (28/31) Computing stats ... group 1/1: min (29/31) Computing stats ... group 1/1: min (30/31) Computing stats ... group 1/1: min (31/31) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max (6/31) Computing stats ... group 1/1: max (7/31) Computing stats ... group 1/1: max (8/31) Computing stats ... group 1/1: max (9/31) Computing stats ... group 1/1: max (10/31) Computing stats ... group 1/1: max (11/31) Computing stats ... group 1/1: max (12/31) Computing stats ... group 1/1: max (13/31) Computing stats ... group 1/1: max (14/31) Computing stats ... group 1/1: max (15/31) Computing stats ... group 1/1: max (16/31) Computing stats ... group 1/1: max (17/31) Computing stats ... group 1/1: max (18/31) Computing stats ... group 1/1: max (19/31) Computing stats ... group 1/1: max (20/31) Computing stats ... group 1/1: max (21/31) Computing stats ... group 1/1: max (22/31) Computing stats ... group 1/1: max (23/31) Computing stats ... group 1/1: max (24/31) Computing stats ... group 1/1: max (25/31) Computing stats ... group 1/1: max (26/31) Computing stats ... group 1/1: max (27/31) Computing stats ... group 1/1: max (28/31) Computing stats ... group 1/1: max (29/31) Computing stats ... group 1/1: max (30/31) Computing stats ... group 1/1: max (31/31) Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max (6/31) Computing stats ... group 1/1: max (7/31) Computing stats ... group 1/1: max (8/31) Computing stats ... group 1/1: max (9/31) Computing stats ... group 1/1: max (10/31) Computing stats ... group 1/1: max (11/31) Computing stats ... group 1/1: max (12/31) Computing stats ... group 1/1: max (13/31) Computing stats ... group 1/1: max (14/31) Computing stats ... group 1/1: max (15/31) Computing stats ... group 1/1: max (16/31) Computing stats ... group 1/1: max (17/31) Computing stats ... group 1/1: max (18/31) Computing stats ... group 1/1: max (19/31) Computing stats ... group 1/1: max (20/31) Computing stats ... group 1/1: max (21/31) Computing stats ... group 1/1: max (22/31) Computing stats ... group 1/1: max (23/31) Computing stats ... group 1/1: max (24/31) Computing stats ... group 1/1: max (25/31) Computing stats ... group 1/1: max (26/31) Computing stats ... group 1/1: max (27/31) Computing stats ... group 1/1: max (28/31) Computing stats ... group 1/1: max (29/31) Computing stats ... group 1/1: max (30/31) Computing stats ... group 1/1: max (31/31) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/31) Computing stats ... group 1/1: mean (2/31) Computing stats ... group 1/1: mean (3/31) Computing stats ... group 1/1: mean (4/31) Computing stats ... group 1/1: mean (5/31) Computing stats ... group 1/1: mean (6/31) Computing stats ... group 1/1: mean (7/31) Computing stats ... group 1/1: mean (8/31) Computing stats ... group 1/1: mean (9/31) Computing stats ... group 1/1: mean (10/31) Computing stats ... group 1/1: mean (11/31) Computing stats ... group 1/1: mean (12/31) Computing stats ... group 1/1: mean (13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: mean (1/31) Computing stats ... group 1/1: mean (2/31) Computing stats ... group 1/1: mean (3/31) Computing stats ... group 1/1: mean (4/31) Computing stats ... group 1/1: mean (5/31) Computing stats ... group 1/1: mean (6/31) Computing stats ... group 1/1: mean (7/31) Computing stats ... group 1/1: mean (8/31) Computing stats ... group 1/1: mean (9/31) Computing stats ... group 1/1: mean (10/31) Computing stats ... group 1/1: mean (11/31) Computing stats ... group 1/1: mean (12/31) Computing stats ... group 1/1: mean (13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 1/1: median (9/31) Computing stats ... group 1/1: median (10/31) Computing stats ... group 1/1: median (11/31) Computing stats ... group 1/1: median (12/31) Computing stats ... group 1/1: median (13/31) Computing stats ... group 1/1: median (14/31) Computing stats ... group 1/1: median (15/31) Computing stats ... group 1/1: median (16/31) Computing stats ... group 1/1: median (17/31) Computing stats ... group 1/1: median (18/31) Computing stats ... group 1/1: median (19/31) Computing stats ... group 1/1: median (20/31) Computing stats ... group 1/1: median (21/31) Computing stats ... group 1/1: median (22/31) Computing stats ... group 1/1: median (23/31) Computing stats ... group 1/1: median (24/31) Computing stats ... group 1/1: median (25/31) Computing stats ... group 1/1: median (26/31) Computing stats ... group 1/1: median (27/31) Computing stats ... group 1/1: median (28/31) Computing stats ... group 1/1: median (29/31) Computing stats ... group 1/1: median (30/31) Computing stats ... group 1/1: median (31/31) Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 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... group 1/1: median (31/31) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/31) Computing stats ... group 1/1: ops: outliers (2/31) Computing stats ... group 1/1: ops: outliers (3/31) Computing stats ... group 1/1: ops: outliers (4/31) Computing stats ... group 1/1: ops: outliers (5/31) Computing stats ... group 1/1: ops: outliers (6/31) Computing stats ... group 1/1: ops: outliers (7/31) Computing stats ... group 1/1: ops: outliers (8/31) Computing stats ... group 1/1: ops: outliers (9/31) Computing stats ... group 1/1: ops: outliers (10/31) Computing stats ... group 1/1: ops: outliers (11/31) Computing stats ... group 1/1: ops: outliers (12/31) Computing stats ... group 1/1: ops: outliers (13/31) Computing stats ... group 1/1: ops: outliers (14/31) Computing stats ... group 1/1: ops: outliers (15/31) Computing stats ... group 1/1: ops: outliers (16/31) Computing stats ... group 1/1: ops: outliers (17/31) Computing stats ... group 1/1: ops: outliers (18/31) Computing stats ... group 1/1: ops: outliers (19/31) Computing stats ... group 1/1: ops: outliers (20/31) Computing stats ... group 1/1: ops: outliers (21/31) Computing stats ... group 1/1: ops: outliers (22/31) Computing stats ... group 1/1: ops: outliers (23/31) Computing stats ... group 1/1: ops: outliers (24/31) Computing stats ... group 1/1: ops: outliers (25/31) Computing stats ... group 1/1: ops: outliers (26/31) Computing stats ... group 1/1: ops: outliers (27/31) Computing stats ... group 1/1: ops: outliers (28/31) Computing stats ... group 1/1: ops: outliers (29/31) Computing stats ... group 1/1: ops: outliers (30/31) Computing stats ... group 1/1: ops: outliers (31/31) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/31) Computing stats ... group 1/1: ops: rounds (2/31) Computing stats ... group 1/1: ops: rounds (3/31) Computing stats ... group 1/1: ops: rounds (4/31) Computing stats ... group 1/1: ops: rounds (5/31) Computing stats ... group 1/1: ops: rounds (6/31) Computing stats ... group 1/1: ops: rounds (7/31) Computing stats ... group 1/1: ops: rounds (8/31) Computing stats ... group 1/1: ops: rounds (9/31) Computing stats ... group 1/1: ops: rounds (10/31) Computing stats ... group 1/1: ops: rounds (11/31) Computing stats ... group 1/1: ops: rounds (12/31) Computing stats ... group 1/1: ops: rounds (13/31) Computing stats ... group 1/1: ops: rounds (14/31) Computing stats ... group 1/1: ops: rounds (15/31) Computing stats ... group 1/1: ops: rounds (16/31) Computing stats ... group 1/1: ops: rounds (17/31) Computing stats ... group 1/1: ops: rounds (18/31) Computing stats ... group 1/1: ops: rounds (19/31) Computing stats ... group 1/1: ops: rounds (20/31) Computing stats ... group 1/1: ops: rounds (21/31) Computing stats ... group 1/1: ops: rounds (22/31) Computing stats ... group 1/1: ops: rounds (23/31) Computing stats ... group 1/1: ops: rounds (24/31) Computing stats ... group 1/1: ops: rounds (25/31) Computing stats ... group 1/1: ops: rounds (26/31) Computing stats ... group 1/1: ops: rounds (27/31) Computing stats ... group 1/1: ops: rounds (28/31) Computing stats ... group 1/1: ops: rounds (29/31) Computing stats ... group 1/1: ops: rounds (30/31) Computing stats ... group 1/1: ops: rounds (31/31) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/31) Computing stats ... group 1/1: ops: iterations (2/31) Computing stats ... group 1/1: ops: iterations (3/31) Computing stats ... group 1/1: ops: iterations (4/31) Computing stats ... group 1/1: ops: iterations (5/31) Computing stats ... group 1/1: ops: iterations (6/31) Computing stats ... group 1/1: ops: iterations (7/31) Computing stats ... group 1/1: ops: iterations (8/31) Computing stats ... group 1/1: ops: iterations (9/31) Computing stats ... group 1/1: ops: iterations (10/31) Computing stats ... group 1/1: ops: iterations (11/31) Computing stats ... group 1/1: ops: iterations (12/31) Computing stats ... group 1/1: ops: iterations (13/31) Computing stats ... group 1/1: ops: iterations (14/31) Computing stats ... group 1/1: ops: iterations (15/31) Computing stats ... group 1/1: ops: iterations (16/31) Computing stats ... group 1/1: ops: iterations (17/31) Computing stats ... group 1/1: ops: iterations (18/31) Computing stats ... group 1/1: ops: iterations (19/31) Computing stats ... group 1/1: ops: iterations (20/31) Computing stats ... group 1/1: ops: iterations (21/31) Computing stats ... group 1/1: ops: iterations (22/31) Computing stats ... group 1/1: ops: iterations (23/31) Computing stats ... group 1/1: ops: iterations (24/31) Computing stats ... group 1/1: ops: iterations (25/31) Computing stats ... group 1/1: ops: iterations (26/31) Computing stats ... group 1/1: ops: iterations (27/31) Computing stats ... group 1/1: ops: iterations (28/31) Computing stats ... group 1/1: ops: iterations (29/31) Computing stats ... group 1/1: ops: iterations (30/31) Computing stats ... group 1/1: ops: iterations (31/31) ---------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ----------------------------------------------------------------------------------------------------------------------------- -Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[cplex] 58.0030 (1.0) 4,220.5600 (21.94) 75.6569 (1.12) 181.3704 (13.01) 64.0040 (1.00) 7.6680 (1.53) 1;18 13,217.5564 (0.89) 530 1 -test_subtract_metabolite_benchmark[gurobi] 58.3360 (1.01) 192.3440 (1.0) 67.5351 (1.0) 13.9402 (1.0) 64.0030 (1.0) 7.9998 (1.60) 26;27 14,807.1121 (1.0) 466 1 -test_subtract_metabolite_benchmark[glpk] 59.3369 (1.02) 1,505.4140 (7.83) 75.3699 (1.12) 71.1935 (5.11) 69.3372 (1.08) 4.9990 (1.0) 6;23 13,267.9024 (0.90) 431 1 -test_change_objective_benchmark[optlang-glpk] 4,346.8999 (74.94) 38,051.0448 (197.83) 6,459.4783 (95.65) 3,337.4440 (239.41) 4,992.7690 (78.01) 1,562.5841 (312.58) 32;78 154.8113 (0.01) 328 1 -test_achr_sample_benchmark 4,792.9229 (82.63) 15,354.8201 (79.83) 7,569.4193 (112.08) 3,421.5565 (245.45) 5,404.2890 (84.44) 3,713.8651 (742.91) 4;1 132.1105 (0.01) 22 1 -test_optgp_sample_benchmark 5,044.2701 (86.97) 16,055.8571 (83.47) 7,289.1644 (107.93) 1,766.4251 (126.71) 7,034.0425 (109.90) 1,538.4159 (307.74) 24;7 137.1899 (0.01) 126 1 -test_loopless_benchmark_after 25,100.3399 (432.74) 63,857.7421 (332.00) 42,958.8767 (636.10) 16,612.8096 (>1000.0) 42,759.4495 (668.08) 31,359.5076 (>1000.0) 4;0 23.2781 (0.00) 12 1 -test_minimal_medium_mip_benchmark 103,919.2148 (>1000.0) 140,296.1570 (729.40) 122,198.6911 (>1000.0) 12,041.8945 (863.83) 122,731.3865 (>1000.0) 10,850.9141 (>1000.0) 2;0 8.1834 (0.00) 6 1 -test_minimal_medium_linear_benchmark 104,999.6060 (>1000.0) 215,665.1809 (>1000.0) 169,753.6634 (>1000.0) 47,513.7588 (>1000.0) 182,622.4180 (>1000.0) 81,183.2512 (>1000.0) 1;0 5.8909 (0.00) 5 1 -test_loopless_benchmark_before 160,087.8800 (>1000.0) 214,761.1319 (>1000.0) 189,978.0088 (>1000.0) 21,515.9322 (>1000.0) 189,089.4282 (>1000.0) 32,800.0840 (>1000.0) 2;0 5.2638 (0.00) 5 1 -test_single_reaction_deletion_benchmark[glpk] 278,559.6361 (>1000.0) 641,123.7859 (>1000.0) 448,608.0408 (>1000.0) 133,000.7511 (>1000.0) 438,693.9080 (>1000.0) 162,585.9035 (>1000.0) 2;0 2.2291 (0.00) 5 1 -test_gpr_equality_benchmark 485,332.0988 (>1000.0) 550,728.9490 (>1000.0) 512,766.2407 (>1000.0) 26,988.0240 (>1000.0) 506,047.8789 (>1000.0) 43,746.6863 (>1000.0) 2;0 1.9502 (0.00) 5 1 -test_deepcopy_benchmark 597,915.1390 (>1000.0) 726,414.7131 (>1000.0) 670,029.4154 (>1000.0) 51,940.8838 (>1000.0) 664,145.0319 (>1000.0) 81,230.7826 (>1000.0) 2;0 1.4925 (0.00) 5 1 -test_copy_benchmark[optlang-glpk] 840,196.8400 (>1000.0) 1,555,389.6250 (>1000.0) 1,302,743.7084 (>1000.0) 287,428.6107 (>1000.0) 1,369,003.2710 (>1000.0) 385,489.5593 (>1000.0) 1;0 0.7676 (0.00) 5 1 -test_add_metabolite_benchmark[glpk] 1,028,585.9948 (>1000.0) 1,272,962.4719 (>1000.0) 1,166,246.6655 (>1000.0) 125,930.3769 (>1000.0) 1,244,305.9308 (>1000.0) 231,764.8003 (>1000.0) 2;0 0.8575 (0.00) 5 1 -test_single_gene_deletion_fba_benchmark[glpk] 1,139,960.9360 (>1000.0) 1,550,215.9880 (>1000.0) 1,414,602.9650 (>1000.0) 168,078.5739 (>1000.0) 1,462,209.2571 (>1000.0) 222,268.4459 (>1000.0) 1;0 0.7069 (0.00) 5 1 -test_add_metabolite_benchmark[gurobi] 1,154,622.4379 (>1000.0) 1,716,148.6431 (>1000.0) 1,410,835.3531 (>1000.0) 246,264.4083 (>1000.0) 1,351,363.3539 (>1000.0) 440,630.2011 (>1000.0) 2;0 0.7088 (0.00) 5 1 -test_add_metabolite_benchmark[cplex] 1,265,054.7118 (>1000.0) 1,376,435.7041 (>1000.0) 1,314,388.8997 (>1000.0) 43,792.1552 (>1000.0) 1,295,974.3768 (>1000.0) 61,918.5804 (>1000.0) 2;0 0.7608 (0.00) 5 1 -test_optgp_init_benchmark 1,369,842.1391 (>1000.0) 3,012,357.8361 (>1000.0) 2,093,404.5048 (>1000.0) 626,453.0881 (>1000.0) 2,115,913.3071 (>1000.0) 857,504.7842 (>1000.0) 2;0 0.4777 (0.00) 5 1 -test_fastcc_benchmark[glpk] 1,634,246.8190 (>1000.0) 2,699,491.7300 (>1000.0) 2,260,844.4910 (>1000.0) 444,487.2862 (>1000.0) 2,255,039.1790 (>1000.0) 724,284.8368 (>1000.0) 1;0 0.4423 (0.00) 5 1 -test_achr_init_benchmark 2,280,315.0839 (>1000.0) 3,836,922.5271 (>1000.0) 2,794,264.2576 (>1000.0) 638,602.3124 (>1000.0) 2,459,063.6271 (>1000.0) 798,420.2128 (>1000.0) 1;0 0.3579 (0.00) 5 1 -test_double_gene_deletion_benchmark 2,903,135.3090 (>1000.0) 4,177,655.6789 (>1000.0) 3,448,027.7298 (>1000.0) 488,571.2975 (>1000.0) 3,511,779.7989 (>1000.0) 637,896.8859 (>1000.0) 2;0 0.2900 (0.00) 5 1 -test_gpr_symbolism_benchmark 3,762,979.0292 (>1000.0) 3,893,597.0501 (>1000.0) 3,831,100.0905 (>1000.0) 50,820.8883 (>1000.0) 3,821,865.5270 (>1000.0) 74,935.2812 (>1000.0) 2;0 0.2610 (0.00) 5 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 5,483,679.3921 (>1000.0) 7,921,838.0870 (>1000.0) 6,633,952.9439 (>1000.0) 968,196.6368 (>1000.0) 6,273,259.4982 (>1000.0) 1,439,880.7973 (>1000.0) 2;0 0.1507 (0.00) 5 1 -test_pfba_benchmark[glpk] 5,901,553.9980 (>1000.0) 7,353,784.1800 (>1000.0) 6,822,194.8716 (>1000.0) 588,007.2999 (>1000.0) 6,898,347.5359 (>1000.0) 835,130.4939 (>1000.0) 1;0 0.1466 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 6,176,095.2321 (>1000.0) 8,443,223.0811 (>1000.0) 7,446,624.8522 (>1000.0) 919,741.7596 (>1000.0) 7,531,445.4190 (>1000.0) 1,486,056.8685 (>1000.0) 2;0 0.1343 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 7,698,180.9810 (>1000.0) 9,071,300.2442 (>1000.0) 8,369,097.0006 (>1000.0) 546,058.5485 (>1000.0) 8,519,918.4790 (>1000.0) 829,535.7031 (>1000.0) 2;0 0.1195 (0.00) 5 1 -test_flux_variability_loopless_benchmark[glpk] 8,946,060.8871 (>1000.0) 9,930,711.7800 (>1000.0) 9,436,754.8802 (>1000.0) 472,511.5080 (>1000.0) 9,474,078.4038 (>1000.0) 922,060.3036 (>1000.0) 2;0 0.1060 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 11,143,132.3329 (>1000.0) 23,099,093.0991 (>1000.0) 18,283,394.9304 (>1000.0) 5,407,309.6842 (>1000.0) 21,628,319.0718 (>1000.0) 8,901,408.0461 (>1000.0) 1;0 0.0547 (0.00) 5 1 -test_double_reaction_deletion_benchmark 32,577,646.7891 (>1000.0) 35,047,634.9581 (>1000.0) 33,984,066.3253 (>1000.0) 1,237,352.2634 (>1000.0) 34,579,992.6710 (>1000.0) 2,336,884.6123 (>1000.0) 2;0 0.0294 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 46,685,663.7329 (>1000.0) 63,412,943.5222 (>1000.0) 52,739,746.9318 (>1000.0) 7,038,462.6858 (>1000.0) 49,656,612.0142 (>1000.0) 10,625,314.6226 (>1000.0) 1;0 0.0190 (0.00) 5 1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + Computing stats ... 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ops: iterations (7/31) Computing stats ... group 1/1: ops: iterations (8/31) Computing stats ... group 1/1: ops: iterations (9/31) Computing stats ... group 1/1: ops: iterations (10/31) Computing stats ... group 1/1: ops: iterations (11/31) Computing stats ... group 1/1: ops: iterations (12/31) Computing stats ... group 1/1: ops: iterations (13/31) Computing stats ... group 1/1: ops: iterations (14/31) Computing stats ... group 1/1: ops: iterations (15/31) Computing stats ... group 1/1: ops: iterations (16/31) Computing stats ... group 1/1: ops: iterations (17/31) Computing stats ... group 1/1: ops: iterations (18/31) Computing stats ... group 1/1: ops: iterations (19/31) Computing stats ... group 1/1: ops: iterations (20/31) Computing stats ... group 1/1: ops: iterations (21/31) Computing stats ... group 1/1: ops: iterations (22/31) Computing stats ... group 1/1: ops: iterations (23/31) Computing stats ... group 1/1: ops: iterations (24/31) Computing stats ... group 1/1: ops: iterations (25/31) Computing stats ... group 1/1: ops: iterations (26/31) Computing stats ... group 1/1: ops: iterations (27/31) Computing stats ... group 1/1: ops: iterations (28/31) Computing stats ... group 1/1: ops: iterations (29/31) Computing stats ... group 1/1: ops: iterations (30/31) Computing stats ... group 1/1: ops: iterations (31/31) ---------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ---------------------------------------------------------------------------------------------------------------------------- +Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +test_subtract_metabolite_benchmark[gurobi] 18.5390 (1.0) 118.0890 (1.07) 23.8467 (1.0) 6.2093 (1.16) 23.3169 (1.0) 3.8600 (1.21) 22;21 41,934.5741 (1.0) 1183 1 +test_subtract_metabolite_benchmark[cplex] 19.2390 (1.04) 110.4090 (1.0) 25.0412 (1.05) 5.3413 (1.0) 24.6380 (1.06) 3.1999 (1.0) 37;25 39,934.1419 (0.95) 1104 1 +test_subtract_metabolite_benchmark[glpk] 19.2991 (1.04) 382.9841 (3.47) 26.1818 (1.10) 16.4060 (3.07) 24.9980 (1.07) 4.1398 (1.29) 17;22 38,194.4587 (0.91) 1010 1 +test_achr_sample_benchmark 1,280.2599 (69.06) 1,626.2470 (14.73) 1,434.5496 (60.16) 57.6580 (10.79) 1,429.5260 (61.31) 83.5422 (26.11) 110;4 697.0829 (0.02) 349 1 +test_change_objective_benchmark[optlang-glpk] 1,282.6800 (69.19) 39,027.3180 (353.48) 2,007.6135 (84.19) 2,890.9610 (541.25) 1,507.3190 (64.64) 148.0262 (46.26) 28;67 498.1038 (0.01) 903 1 +test_optgp_sample_benchmark 1,790.9920 (96.61) 2,723.7050 (24.67) 2,080.5685 (87.25) 116.5245 (21.82) 2,070.0960 (88.78) 150.9059 (47.16) 104;3 480.6379 (0.01) 362 1 +test_loopless_benchmark_after 7,630.5850 (411.60) 8,858.9700 (80.24) 8,172.3985 (342.71) 218.4409 (40.90) 8,165.9345 (350.21) 263.0962 (82.22) 19;2 122.3631 (0.00) 66 1 +test_loopless_benchmark_before 32,882.1789 (>1000.0) 36,068.5810 (326.68) 33,983.8295 (>1000.0) 865.8668 (162.11) 33,924.7619 (>1000.0) 989.8172 (309.33) 6;1 29.4258 (0.00) 21 1 +test_minimal_medium_linear_benchmark 34,652.4740 (>1000.0) 40,039.4290 (362.65) 36,619.7972 (>1000.0) 1,645.9706 (308.16) 36,720.1790 (>1000.0) 2,956.1283 (923.82) 5;0 27.3076 (0.00) 17 1 +test_minimal_medium_mip_benchmark 38,350.0070 (>1000.0) 43,406.6330 (393.14) 40,210.2236 (>1000.0) 1,484.4902 (277.93) 40,041.8885 (>1000.0) 1,946.6180 (608.34) 6;0 24.8693 (0.00) 18 1 +test_single_reaction_deletion_benchmark[glpk] 81,948.3710 (>1000.0) 208,014.8830 (>1000.0) 112,462.1942 (>1000.0) 41,389.4631 (>1000.0) 95,453.4140 (>1000.0) 31,283.6251 (>1000.0) 2;1 8.8919 (0.00) 10 1 +test_copy_benchmark[optlang-glpk] 128,186.0330 (>1000.0) 159,584.1870 (>1000.0) 135,339.8074 (>1000.0) 11,153.6490 (>1000.0) 131,025.9671 (>1000.0) 6,972.8807 (>1000.0) 1;1 7.3888 (0.00) 7 1 +test_deepcopy_benchmark 175,644.9400 (>1000.0) 334,415.0441 (>1000.0) 239,835.6775 (>1000.0) 68,298.9887 (>1000.0) 228,370.8530 (>1000.0) 112,870.0509 (>1000.0) 1;0 4.1695 (0.00) 6 1 +test_gpr_equality_benchmark 181,908.4330 (>1000.0) 230,835.3421 (>1000.0) 202,185.7620 (>1000.0) 19,749.8486 (>1000.0) 206,340.7600 (>1000.0) 28,405.5801 (>1000.0) 2;0 4.9459 (0.00) 5 1 +test_single_gene_deletion_fba_benchmark[glpk] 242,723.4660 (>1000.0) 288,515.9299 (>1000.0) 271,012.1484 (>1000.0) 18,400.1852 (>1000.0) 268,946.5859 (>1000.0) 24,898.0895 (>1000.0) 1;0 3.6899 (0.00) 5 1 +test_add_metabolite_benchmark[cplex] 352,940.8249 (>1000.0) 374,888.3660 (>1000.0) 363,007.2650 (>1000.0) 9,486.4216 (>1000.0) 359,535.8271 (>1000.0) 16,306.2255 (>1000.0) 2;0 2.7548 (0.00) 5 1 +test_add_metabolite_benchmark[gurobi] 361,946.6011 (>1000.0) 367,652.1049 (>1000.0) 365,540.3074 (>1000.0) 2,349.1854 (439.82) 366,327.8300 (>1000.0) 3,504.5652 (>1000.0) 1;0 2.7357 (0.00) 5 1 +test_add_metabolite_benchmark[glpk] 367,514.7380 (>1000.0) 396,144.8920 (>1000.0) 382,003.8908 (>1000.0) 11,188.8195 (>1000.0) 384,237.3489 (>1000.0) 16,883.8407 (>1000.0) 2;0 2.6178 (0.00) 5 1 +test_achr_init_benchmark 414,797.3760 (>1000.0) 455,132.8770 (>1000.0) 433,337.3710 (>1000.0) 16,156.5649 (>1000.0) 427,898.2690 (>1000.0) 24,834.1080 (>1000.0) 2;0 2.3077 (0.00) 5 1 +test_optgp_init_benchmark 445,685.0420 (>1000.0) 1,655,897.3130 (>1000.0) 692,439.1626 (>1000.0) 538,611.8528 (>1000.0) 453,072.2300 (>1000.0) 310,040.1108 (>1000.0) 1;1 1.4442 (0.00) 5 1 +test_fastcc_benchmark[glpk] 523,378.3140 (>1000.0) 834,998.2160 (>1000.0) 687,035.3588 (>1000.0) 120,138.0803 (>1000.0) 717,559.7550 (>1000.0) 172,858.0062 (>1000.0) 2;0 1.4555 (0.00) 5 1 +test_double_gene_deletion_benchmark 739,472.3630 (>1000.0) 786,810.2880 (>1000.0) 754,748.9232 (>1000.0) 19,649.0459 (>1000.0) 748,521.4140 (>1000.0) 26,397.8319 (>1000.0) 1;0 1.3249 (0.00) 5 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 1,142,550.4601 (>1000.0) 1,180,583.1320 (>1000.0) 1,167,020.6086 (>1000.0) 16,667.6008 (>1000.0) 1,176,411.7430 (>1000.0) 25,911.1390 (>1000.0) 1;0 0.8569 (0.00) 5 1 +test_gpr_symbolism_benchmark 1,270,970.7919 (>1000.0) 1,470,022.0160 (>1000.0) 1,382,709.4000 (>1000.0) 86,626.0269 (>1000.0) 1,381,161.1329 (>1000.0) 153,509.9918 (>1000.0) 2;0 0.7232 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 1,531,748.0430 (>1000.0) 1,704,092.2720 (>1000.0) 1,605,997.4200 (>1000.0) 74,902.0781 (>1000.0) 1,565,994.1089 (>1000.0) 122,280.6063 (>1000.0) 1;0 0.6227 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 1,630,396.8891 (>1000.0) 2,901,693.9490 (>1000.0) 1,955,958.3464 (>1000.0) 532,820.6334 (>1000.0) 1,754,125.0191 (>1000.0) 406,209.8173 (>1000.0) 1;1 0.5113 (0.00) 5 1 +test_pfba_benchmark[glpk] 1,756,075.4960 (>1000.0) 2,215,280.5710 (>1000.0) 1,945,490.5562 (>1000.0) 173,396.4896 (>1000.0) 1,938,481.7020 (>1000.0) 214,639.9712 (>1000.0) 2;0 0.5140 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 2,479,018.6661 (>1000.0) 2,989,296.3701 (>1000.0) 2,683,900.0632 (>1000.0) 224,102.9671 (>1000.0) 2,552,304.1900 (>1000.0) 359,572.3980 (>1000.0) 1;0 0.3726 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 2,509,392.3170 (>1000.0) 3,608,887.5580 (>1000.0) 3,104,859.5640 (>1000.0) 527,315.9977 (>1000.0) 3,343,823.7271 (>1000.0) 974,939.6668 (>1000.0) 2;0 0.3221 (0.00) 5 1 +test_double_reaction_deletion_benchmark 3,844,239.4880 (>1000.0) 3,910,088.4190 (>1000.0) 3,876,890.1612 (>1000.0) 29,056.8448 (>1000.0) 3,867,611.0799 (>1000.0) 51,396.2840 (>1000.0) 2;0 0.2579 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 12,797,309.4061 (>1000.0) 17,355,194.2429 (>1000.0) 15,118,922.5730 (>1000.0) 2,145,833.0056 (>1000.0) 14,672,876.7710 (>1000.0) 4,080,285.2645 (>1000.0) 3;0 0.0661 (0.00) 5 1 +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 511 passed, 27 skipped, 11 xfailed, 122 warnings in 2890.86s (0:48:10) ==== +==== 511 passed, 27 skipped, 11 xfailed, 146 warnings in 693.16s (0:11:33) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1671,237 +1714,237 @@ creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11 creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc -byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc +byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info @@ -1919,11 +1962,11 @@ Skipping SOURCES.txt running install_scripts debian/rules override_dh_install -make[1]: Entering directory '/build/python-cobra-0.26.2' +make[1]: ingresso nella directory «/build/python-cobra-0.26.2» dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf -make[1]: Leaving directory '/build/python-cobra-0.26.2' +make[1]: uscita dalla directory «/build/python-cobra-0.26.2» dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild @@ -1945,8 +1988,8 @@ dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.26.2-1_armhf.deb'. -dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.26.2-1_all.deb'. +dpkg-deb: generazione del pacchetto "python-cobra-data" in "../python-cobra-data_0.26.2-1_all.deb". +dpkg-deb: generazione del pacchetto "python3-cobra" in "../python3-cobra_0.26.2-1_armhf.deb". dpkg-genbuildinfo --build=binary -O../python-cobra_0.26.2-1_armhf.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.26.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1954,12 +1997,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27445/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3242 and its subdirectories -I: Current time: Sun Jun 11 07:26:16 -12 2023 -I: pbuilder-time-stamp: 1686511576 +I: removing directory /srv/workspace/pbuilder/27445 and its subdirectories +I: Current time: Mon Jun 12 09:44:15 +14 2023 +I: pbuilder-time-stamp: 1686512655